Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451570 | RHN51853.1 | 57.062 | 177 | 61 | 1 | 62 | 223 | 330 | 506 | 6.72e-66 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451570 | sp|Q9FNR1|RBG3_ARATH | 47.143 | 70 | 33 | 1 | 1 | 66 | 1 | 70 | 3.32e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451570 | A0A396HGY8 | 57.062 | 177 | 61 | 1 | 62 | 223 | 330 | 506 | 3.21e-66 | 222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057140 | Msa0451570 | 0.815726 | 7.973659e-52 | -8.615850e-47 |
| Msa0073480 | Msa0451570 | 0.802828 | 4.661421e-49 | -8.615850e-47 |
| Msa0451570 | Msa0499410 | 0.872507 | 3.016264e-67 | -8.615850e-47 |
| Msa0451570 | Msa0691900 | 0.802918 | 4.466788e-49 | -8.615850e-47 |
| Msa0451570 | Msa0933290 | 0.817666 | 2.930263e-52 | -8.615850e-47 |
| Msa0451570 | Msa1040800 | 0.805351 | 1.392147e-49 | -8.615850e-47 |
| Msa0346480 | Msa0451570 | 0.817010 | 4.116240e-52 | -8.615850e-47 |
| Msa0346500 | Msa0451570 | 0.821643 | 3.619656e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451570 | MtrunA17_Chr6g0473661 | 57.062 | 177 | 61 | 1 | 62 | 223 | 330 | 506 | 6.18e-70 | 222 |
| Msa0451570 | MtrunA17_Chr6g0473661 | 32.576 | 132 | 70 | 4 | 63 | 193 | 81 | 194 | 1.30e-13 | 69.3 |
| Msa0451570 | MtrunA17_Chr1g0156191 | 68.421 | 133 | 27 | 1 | 63 | 180 | 3 | 135 | 2.20e-59 | 183 |
| Msa0451570 | MtrunA17_Chr6g0473921 | 57.143 | 140 | 45 | 1 | 94 | 218 | 1 | 140 | 8.53e-56 | 174 |
| Msa0451570 | MtrunA17_Chr6g0462511 | 58.621 | 116 | 32 | 2 | 84 | 183 | 1 | 116 | 3.78e-40 | 134 |
| Msa0451570 | MtrunA17_Chr6g0473651 | 33.987 | 153 | 78 | 4 | 63 | 193 | 40 | 191 | 1.01e-22 | 94.7 |
| Msa0451570 | MtrunA17_Chr6g0473651 | 62.963 | 54 | 20 | 0 | 62 | 115 | 299 | 352 | 1.42e-17 | 80.5 |
| Msa0451570 | MtrunA17_Chr6g0473641 | 58.462 | 65 | 24 | 1 | 159 | 223 | 1 | 62 | 1.13e-21 | 84.7 |
| Msa0451570 | MtrunA17_Chr7g0219021 | 61.765 | 68 | 22 | 1 | 1 | 64 | 1 | 68 | 5.18e-19 | 82.8 |
| Msa0451570 | MtrunA17_Chr7g0219031 | 57.143 | 70 | 26 | 1 | 1 | 66 | 1 | 70 | 1.54e-18 | 78.2 |
| Msa0451570 | MtrunA17_Chr8g0366201 | 28.182 | 110 | 66 | 1 | 114 | 210 | 2 | 111 | 5.65e-12 | 60.8 |
| Msa0451570 | MtrunA17_Chr4g0061451 | 52.778 | 72 | 28 | 2 | 1 | 66 | 1 | 72 | 1.38e-11 | 62.4 |
| Msa0451570 | MtrunA17_Chr3g0121631 | 45.455 | 66 | 36 | 0 | 1 | 66 | 1 | 66 | 2.26e-11 | 59.7 |
| Msa0451570 | MtrunA17_Chr3g0086861 | 50.000 | 74 | 29 | 2 | 1 | 66 | 1 | 74 | 6.88e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451570 | AT5G61030.2 | 47.143 | 70 | 33 | 1 | 1 | 66 | 1 | 70 | 3.37e-12 | 65.1 |
| Msa0451570 | AT5G61030.1 | 47.143 | 70 | 33 | 1 | 1 | 66 | 1 | 70 | 3.37e-12 | 65.1 |
Find 42 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCATTCTTTGGTAAAAT+TGG | 0.104860 | 3_3:-39788010 | Msa0451570:CDS |
| CTATGAACAATGCTGATTTA+AGG | 0.251889 | 3_3:-39785219 | Msa0451570:CDS |
| CACTGGACTCTCTTCCTAAC+TGG | 0.283570 | 3_3:+39785160 | None:intergenic |
| TAGATCAGCAAGGATATATT+TGG | 0.290921 | 3_3:-39785438 | Msa0451570:CDS |
| GTTTGAGCAATGGCATTCTT+TGG | 0.311906 | 3_3:-39788019 | None:intergenic |
| ATAGGAGGAAGACATTTATT+AGG | 0.322174 | 3_3:+39785715 | None:intergenic |
| GGAATGGCATTCTTCATATA+AGG | 0.346620 | 3_3:-39785282 | Msa0451570:CDS |
| TGACATCGACTCTGGATATC+TGG | 0.373468 | 3_3:-39785614 | Msa0451570:intron |
| GGAGTGATCATCTTTGATAT+AGG | 0.388625 | 3_3:+39785697 | None:intergenic |
| TGGCATTCTTTGGTAAAATT+GGG | 0.397113 | 3_3:-39788009 | Msa0451570:CDS |
| TTTGAAGGATTGGAGGTGAC+TGG | 0.416212 | 3_3:-39785375 | Msa0451570:intron |
| ACACAGGTCGTGTCTTGGTT+TGG | 0.420195 | 3_3:-39785508 | Msa0451570:intron |
| TGCTATGGGGAAGTTCTTGA+TGG | 0.434349 | 3_3:-39787765 | Msa0451570:intron |
| CTTATGTGCAGCGCGTAACT+TGG | 0.437374 | 3_3:-39785347 | Msa0451570:CDS |
| ACTTCTCGCAGTGCCCAGTT+AGG | 0.447865 | 3_3:-39785174 | Msa0451570:CDS |
| GATCAATCATGGTTTATCTT+CGG | 0.451765 | 3_3:-39787957 | Msa0451570:CDS |
| ATCACCATGCTGCCATCATT+TGG | 0.451917 | 3_3:+39785676 | None:intergenic |
| GATAGCTGAATCACATTTGT+GGG | 0.464015 | 3_3:+39785466 | None:intergenic |
| TACTTAATCATTCTACTGTC+AGG | 0.479445 | 3_3:-39787982 | Msa0451570:CDS |
| CTGGGCACTGCGAGAAGTAA+TGG | 0.484915 | 3_3:+39785179 | None:intergenic |
| TGATTTAAGGCATGTGTACC+AGG | 0.493796 | 3_3:-39785206 | Msa0451570:CDS |
| CTTAAACACAGGTCGTGTCT+TGG | 0.494570 | 3_3:-39785513 | Msa0451570:intron |
| AGACAGATCAGGAGTGGAAG+TGG | 0.502826 | 3_3:-39785743 | Msa0451570:CDS |
| CACATTATTGCAAAGCCCAC+TGG | 0.502855 | 3_3:+39785143 | None:intergenic |
| ACATCTTCTGACATCGACTC+TGG | 0.507031 | 3_3:-39785622 | Msa0451570:CDS |
| AAGATGATCACTCCAAATGA+TGG | 0.517981 | 3_3:-39785688 | Msa0451570:CDS |
| CCTTTATGAATGCACTGAAA+AGG | 0.524954 | 3_3:+39785253 | None:intergenic |
| AGATAGCTGAATCACATTTG+TGG | 0.527393 | 3_3:+39785465 | None:intergenic |
| ACTGTCAGGAAGATCAATCA+TGG | 0.528826 | 3_3:-39787968 | Msa0451570:CDS |
| ATGACCATAAAAGACAGATC+AGG | 0.552829 | 3_3:-39785754 | Msa0451570:intron |
| ACTGGACTCTCTTCCTAACT+GGG | 0.553386 | 3_3:+39785161 | None:intergenic |
| TTGCTGTCACCGAAAATACA+AGG | 0.570074 | 3_3:-39785303 | Msa0451570:CDS |
| GTGATCATCTTTGATATAGG+AGG | 0.572297 | 3_3:+39785700 | None:intergenic |
| GTCACCGAAAATACAAGGAA+TGG | 0.598252 | 3_3:-39785298 | Msa0451570:CDS |
| CATAAAAGACAGATCAGGAG+TGG | 0.611114 | 3_3:-39785749 | Msa0451570:intron |
| CACTCCAAATGATGGCAGCA+TGG | 0.614842 | 3_3:-39785680 | Msa0451570:CDS |
| GCGAGAAGTAATGGTTAACC+TGG | 0.615011 | 3_3:+39785188 | None:intergenic |
| AGTTAGGAAGAGAGTCCAGT+GGG | 0.621104 | 3_3:-39785158 | Msa0451570:CDS |
| GCAGCGCGTAACTTGGTCAA+AGG | 0.623770 | 3_3:-39785340 | Msa0451570:CDS |
| CAGTTAGGAAGAGAGTCCAG+TGG | 0.670342 | 3_3:-39785159 | Msa0451570:CDS |
| CTATCTATCATAGATCAGCA+AGG | 0.700041 | 3_3:-39785448 | Msa0451570:CDS |
| GTCTTGGTTTGGTTTCTGCG+AGG | 0.718724 | 3_3:-39785497 | Msa0451570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTATTTTGATATGTTA+TGG | + | chr3_3:39785620-39785639 | None:intergenic | 15.0% |
| !! | CTAAATATAATAATACCTAA+TGG | - | chr3_3:39785652-39785671 | Msa0451570:CDS | 15.0% |
| !!! | ATAATTTATAAACTGATTTC+TGG | - | chr3_3:39786503-39786522 | Msa0451570:intron | 15.0% |
| !!! | ATTTTATAAAAACTAATGTG+CGG | - | chr3_3:39786698-39786717 | Msa0451570:intron | 15.0% |
| !! | TAAGAAAATATATATCAGTT+AGG | - | chr3_3:39786758-39786777 | Msa0451570:intron | 15.0% |
| !! | TTAAAATCATATCCAAAATA+AGG | + | chr3_3:39786887-39786906 | None:intergenic | 15.0% |
| !!! | AACTTACTTATTTTTGAAAT+AGG | - | chr3_3:39786905-39786924 | Msa0451570:intron | 15.0% |
| !!! | ATATTTTAGAATCTTGATTA+TGG | - | chr3_3:39787598-39787617 | Msa0451570:intron | 15.0% |
| !! | GAATTAAAGAATAACAAAAG+AGG | - | chr3_3:39785483-39785502 | Msa0451570:CDS | 20.0% |
| !! | TTGAAATTATTCTACGATTA+TGG | - | chr3_3:39785797-39785816 | Msa0451570:intron | 20.0% |
| !! | AAATAAAATGCAAACTTCTT+TGG | + | chr3_3:39786322-39786341 | None:intergenic | 20.0% |
| !! | TTATCCTAAATAAACAAAGT+TGG | - | chr3_3:39786411-39786430 | Msa0451570:intron | 20.0% |
| !! | TATCCTAAATAAACAAAGTT+GGG | - | chr3_3:39786412-39786431 | Msa0451570:intron | 20.0% |
| !!! | ATAATTAATTAGTTTCGGAA+TGG | + | chr3_3:39787052-39787071 | None:intergenic | 20.0% |
| !! | CCTATGAATATAATATGAAA+CGG | + | chr3_3:39787575-39787594 | None:intergenic | 20.0% |
| !!! | CAGATAATACTATATTTTGA+AGG | - | chr3_3:39787767-39787786 | Msa0451570:CDS | 20.0% |
| !!! | AATACTATATTTTGAAGGAT+TGG | - | chr3_3:39787772-39787791 | Msa0451570:CDS | 20.0% |
| !! | TGAATTTTCTAAATGAAGTG+TGG | - | chr3_3:39785290-39785309 | Msa0451570:CDS | 25.0% |
| ! | TATAATAATACCTAATGGCA+TGG | - | chr3_3:39785657-39785676 | Msa0451570:CDS | 25.0% |
| !!! | TAGGATTTTAGGATTCAAAT+CGG | + | chr3_3:39785694-39785713 | None:intergenic | 25.0% |
| !!! | GAGAATACACAATCTTATTT+TGG | - | chr3_3:39785748-39785767 | Msa0451570:intron | 25.0% |
| !!! | AATACACAATCTTATTTTGG+TGG | - | chr3_3:39785751-39785770 | Msa0451570:intron | 25.0% |
| ! | CAAAGAAAAGTAGATTATAG+AGG | + | chr3_3:39785780-39785799 | None:intergenic | 25.0% |
| !! | AACAAAACCAAATACCTTTT+GGG | + | chr3_3:39786084-39786103 | None:intergenic | 25.0% |
| !! | AAACAAAACCAAATACCTTT+TGG | + | chr3_3:39786085-39786104 | None:intergenic | 25.0% |
| !! | TATGCATTTTCTCAATTGAA+TGG | + | chr3_3:39786276-39786295 | None:intergenic | 25.0% |
| !! | ATTCCCAACTTTGTTTATTT+AGG | + | chr3_3:39786418-39786437 | None:intergenic | 25.0% |
| !! | ATTTATAAACTGATTTCTGG+AGG | - | chr3_3:39786506-39786525 | Msa0451570:intron | 25.0% |
| !!! | TTAAGCTTTAAGTAATAGCA+GGG | + | chr3_3:39786741-39786760 | None:intergenic | 25.0% |
| !!! | GAATCTCTGCAATATTTTTA+AGG | - | chr3_3:39786780-39786799 | Msa0451570:intron | 25.0% |
| ! | TGTACCATGAATAGAAATTA+AGG | + | chr3_3:39786956-39786975 | None:intergenic | 25.0% |
| !! | CTCGCATAATTAATTAGTTT+CGG | + | chr3_3:39787057-39787076 | None:intergenic | 25.0% |
| ! | TTAAGAATGCATCAGTTATA+CGG | + | chr3_3:39787126-39787145 | None:intergenic | 25.0% |
| ! | ATACATAAAAAACATGTCGT+CGG | + | chr3_3:39787168-39787187 | None:intergenic | 25.0% |
| ! | TTTATGTATATATCAGCTGA+AGG | - | chr3_3:39787179-39787198 | Msa0451570:intron | 25.0% |
| ! | CCGTTTCATATTATATTCAT+AGG | - | chr3_3:39787572-39787591 | Msa0451570:intron | 25.0% |
| ATGGCATTCTTTGGTAAAAT+TGG | - | chr3_3:39785147-39785166 | Msa0451570:CDS | 30.0% | |
| TGGCATTCTTTGGTAAAATT+GGG | - | chr3_3:39785148-39785167 | Msa0451570:CDS | 30.0% | |
| TACTTAATCATTCTACTGTC+AGG | - | chr3_3:39785175-39785194 | Msa0451570:CDS | 30.0% | |
| GATCAATCATGGTTTATCTT+CGG | - | chr3_3:39785200-39785219 | Msa0451570:CDS | 30.0% | |
| ! | AAAAAGCTTTGTAGATGACA+TGG | + | chr3_3:39785244-39785263 | None:intergenic | 30.0% |
| ! | TCTACAAAGCTTTTTGTTGA+AGG | - | chr3_3:39785249-39785268 | Msa0451570:CDS | 30.0% |
| TCAAATTTCAATCACAATGC+AGG | - | chr3_3:39785323-39785342 | Msa0451570:CDS | 30.0% | |
| ! | CATAGCAAGCAAAAAGTTTT+CGG | + | chr3_3:39785379-39785398 | None:intergenic | 30.0% |
| !!! | GAAAACTTTTTGCTTGCTAT+GGG | - | chr3_3:39785378-39785397 | Msa0451570:intron | 30.0% |
| !!! | AAAACTTTTTGCTTGCTATG+GGG | - | chr3_3:39785379-39785398 | Msa0451570:intron | 30.0% |
| !!! | TCACTAGTTTTTCCTGATTT+AGG | - | chr3_3:39785440-39785459 | Msa0451570:CDS | 30.0% |
| GTTAACATACTACCTAAATC+AGG | + | chr3_3:39785455-39785474 | None:intergenic | 30.0% | |
| !! | CATTTTAATGAAACCCTAAC+TGG | + | chr3_3:39785591-39785610 | None:intergenic | 30.0% |
| !!! | AGGATTTTAGGATTCAAATC+GGG | + | chr3_3:39785693-39785712 | None:intergenic | 30.0% |
| TGTATTCTCATAATCGTTGA+GGG | + | chr3_3:39785737-39785756 | None:intergenic | 30.0% | |
| ! | ACAAAACCAAATACCTTTTG+GGG | + | chr3_3:39786083-39786102 | None:intergenic | 30.0% |
| GAGAAATTTCATCTGCTATA+CGG | + | chr3_3:39786188-39786207 | None:intergenic | 30.0% | |
| TATAGATGTATAGACAGTAC+TGG | - | chr3_3:39786375-39786394 | Msa0451570:intron | 30.0% | |
| ! | ATGGCAGAATTTAGTTTATC+AGG | - | chr3_3:39786574-39786593 | Msa0451570:intron | 30.0% |
| TATCTTGCCTTGATTCAAAT+TGG | - | chr3_3:39786642-39786661 | Msa0451570:intron | 30.0% | |
| GATTACTCCAATTTGAATCA+AGG | + | chr3_3:39786652-39786671 | None:intergenic | 30.0% | |
| !! | CTTAAGCTTTAAGTAATAGC+AGG | + | chr3_3:39786742-39786761 | None:intergenic | 30.0% |
| !! | TGAAACAATTGATAGTGGTT+AGG | + | chr3_3:39786817-39786836 | None:intergenic | 30.0% |
| AAGCTTGAAACAATTGATAG+TGG | + | chr3_3:39786822-39786841 | None:intergenic | 30.0% | |
| ATTTCTATTCATGGTACAAG+AGG | - | chr3_3:39786958-39786977 | Msa0451570:intron | 30.0% | |
| CGAAACTAATTAATTATGCG+AGG | - | chr3_3:39787055-39787074 | Msa0451570:intron | 30.0% | |
| TAAGAATGCATCAGTTATAC+GGG | + | chr3_3:39787125-39787144 | None:intergenic | 30.0% | |
| CATAAGGTTTGATTCTACAT+AGG | + | chr3_3:39787380-39787399 | None:intergenic | 30.0% | |
| ! | CTTTTATGGTCATATGCATA+AGG | + | chr3_3:39787396-39787415 | None:intergenic | 30.0% |
| ATAGGAGGAAGACATTTATT+AGG | + | chr3_3:39787445-39787464 | None:intergenic | 30.0% | |
| ATTCCTATTCTCTTAAACAC+AGG | - | chr3_3:39787633-39787652 | Msa0451570:intron | 30.0% | |
| TAGATCAGCAAGGATATATT+TGG | - | chr3_3:39787719-39787738 | Msa0451570:intron | 30.0% | |
| ATATATTTGGCAGTGTGATA+TGG | - | chr3_3:39787732-39787751 | Msa0451570:intron | 30.0% | |
| GTGTGATATGGTATTCATTA+TGG | - | chr3_3:39787744-39787763 | Msa0451570:intron | 30.0% | |
| !! | ACTATATTTTGAAGGATTGG+AGG | - | chr3_3:39787775-39787794 | Msa0451570:CDS | 30.0% |
| ! | AATGCCATTCCTTGTATTTT+CGG | + | chr3_3:39787866-39787885 | None:intergenic | 30.0% |
| !! | CTATGAACAATGCTGATTTA+AGG | - | chr3_3:39787938-39787957 | Msa0451570:CDS | 30.0% |
| !! | CGAAAACTTTTTGCTTGCTA+TGG | - | chr3_3:39785377-39785396 | Msa0451570:intron | 35.0% |
| AACTAGTGAATTGTGAGAGT+TGG | + | chr3_3:39785429-39785448 | None:intergenic | 35.0% | |
| TTAACATGACATCAAGAGCA+TGG | + | chr3_3:39785563-39785582 | None:intergenic | 35.0% | |
| TCATGTTAACAAAGCCAGTT+AGG | - | chr3_3:39785574-39785593 | Msa0451570:intron | 35.0% | |
| CATGTTAACAAAGCCAGTTA+GGG | - | chr3_3:39785575-39785594 | Msa0451570:intron | 35.0% | |
| AATAATACCTAATGGCATGG+TGG | - | chr3_3:39785660-39785679 | Msa0451570:CDS | 35.0% | |
| !! | ATTTTAACCACCATGCCATT+AGG | + | chr3_3:39785670-39785689 | None:intergenic | 35.0% |
| ! | TCGCAAAATCGTAGGATTTT+AGG | + | chr3_3:39785705-39785724 | None:intergenic | 35.0% |
| ACGTATAATCGCAAAATCGT+AGG | + | chr3_3:39785713-39785732 | None:intergenic | 35.0% | |
| GTGTATTCTCATAATCGTTG+AGG | + | chr3_3:39785738-39785757 | None:intergenic | 35.0% | |
| TTATTCTACGATTATGGTCG+CGG | - | chr3_3:39785803-39785822 | Msa0451570:intron | 35.0% | |
| !! | NNNNNCCCCCAAAAGGTATT+TGG | - | chr3_3:39786074-39786093 | Msa0451570:intron | 35.0% |
| ! | CAAAACCAAATACCTTTTGG+GGG | + | chr3_3:39786082-39786101 | None:intergenic | 35.0% |
| ACAACACACAAAAGAATGAC+AGG | + | chr3_3:39786108-39786127 | None:intergenic | 35.0% | |
| AAAGTTGAATACCTACTACG+TGG | - | chr3_3:39786221-39786240 | Msa0451570:intron | 35.0% | |
| CGTGTAGCTTATTCTAAGTA+TGG | - | chr3_3:39786555-39786574 | Msa0451570:intron | 35.0% | |
| ACTGATATCTAATGAGCAGA+AGG | - | chr3_3:39786600-39786619 | Msa0451570:intron | 35.0% | |
| ATAAAAACTAATGTGCGGAG+TGG | - | chr3_3:39786703-39786722 | Msa0451570:intron | 35.0% | |
| !! | CAATTGATAGTGGTTAGGAT+AGG | + | chr3_3:39786812-39786831 | None:intergenic | 35.0% |
| TTAGTTAATCGTCAAGCAAC+AGG | + | chr3_3:39786852-39786871 | None:intergenic | 35.0% | |
| !!! | TCATCAGAACTGCCTTATTT+TGG | - | chr3_3:39786872-39786891 | Msa0451570:intron | 35.0% |
| GCAGCCTTAATTTCTATTCA+TGG | - | chr3_3:39786949-39786968 | Msa0451570:intron | 35.0% | |
| AGCATATGTCATTCTTCTGT+TGG | + | chr3_3:39787003-39787022 | None:intergenic | 35.0% | |
| TATTCCTTAGCAAAACACGA+CGG | + | chr3_3:39787213-39787232 | None:intergenic | 35.0% | |
| ! | TCGTGTTTTGCTAAGGAATA+TGG | - | chr3_3:39787213-39787232 | Msa0451570:intron | 35.0% |
| GTTAAGGTCCACAAGAAAAA+TGG | - | chr3_3:39787291-39787310 | Msa0451570:intron | 35.0% | |
| ATGGTTGGATAGGGTTTAAT+TGG | - | chr3_3:39787331-39787350 | Msa0451570:intron | 35.0% | |
| ATGACCATAAAAGACAGATC+AGG | - | chr3_3:39787403-39787422 | Msa0451570:intron | 35.0% | |
| GTGATCATCTTTGATATAGG+AGG | + | chr3_3:39787460-39787479 | None:intergenic | 35.0% | |
| GGAGTGATCATCTTTGATAT+AGG | + | chr3_3:39787463-39787482 | None:intergenic | 35.0% | |
| AAGATGATCACTCCAAATGA+TGG | - | chr3_3:39787469-39787488 | Msa0451570:intron | 35.0% | |
| GATAGCTGAATCACATTTGT+GGG | + | chr3_3:39787694-39787713 | None:intergenic | 35.0% | |
| AGATAGCTGAATCACATTTG+TGG | + | chr3_3:39787695-39787714 | None:intergenic | 35.0% | |
| CTATCTATCATAGATCAGCA+AGG | - | chr3_3:39787709-39787728 | Msa0451570:intron | 35.0% | |
| GGAATGGCATTCTTCATATA+AGG | - | chr3_3:39787875-39787894 | Msa0451570:intron | 35.0% | |
| CCTTTATGAATGCACTGAAA+AGG | + | chr3_3:39787907-39787926 | None:intergenic | 35.0% | |
| ! | CCTTTTCAGTGCATTCATAA+AGG | - | chr3_3:39787904-39787923 | Msa0451570:intron | 35.0% |
| ACTGTCAGGAAGATCAATCA+TGG | - | chr3_3:39785189-39785208 | Msa0451570:CDS | 40.0% | |
| ATTCGTATTGTCATCGTCTC+AGG | - | chr3_3:39786153-39786172 | Msa0451570:intron | 40.0% | |
| TATTGTCATCGTCTCAGGAA+CGG | - | chr3_3:39786158-39786177 | Msa0451570:intron | 40.0% | |
| TTTCTTCACAAGTGTCAACC+AGG | - | chr3_3:39786340-39786359 | Msa0451570:intron | 40.0% | |
| TTCTTCACAAGTGTCAACCA+GGG | - | chr3_3:39786341-39786360 | Msa0451570:intron | 40.0% | |
| CAAGATACACAAAGTCGACT+CGG | - | chr3_3:39786479-39786498 | Msa0451570:intron | 40.0% | |
| TCATGGTACAAGAGGCAATT+AGG | - | chr3_3:39786966-39786985 | Msa0451570:intron | 40.0% | |
| TCCTAACAAGAACATGTTCG+AGG | - | chr3_3:39787269-39787288 | Msa0451570:intron | 40.0% | |
| ACCTCGAACATGTTCTTGTT+AGG | + | chr3_3:39787273-39787292 | None:intergenic | 40.0% | |
| CAAGAACATGTTCGAGGTTA+AGG | - | chr3_3:39787275-39787294 | Msa0451570:intron | 40.0% | |
| !!! | ACACCTTGCCATTTTTCTTG+TGG | + | chr3_3:39787302-39787321 | None:intergenic | 40.0% |
| AAAATGGCAAGGTGTACTTC+AGG | - | chr3_3:39787307-39787326 | Msa0451570:intron | 40.0% | |
| AAATGGCAAGGTGTACTTCA+GGG | - | chr3_3:39787308-39787327 | Msa0451570:intron | 40.0% | |
| !! | TTTAATTGGCCTTGGTGCAT+GGG | - | chr3_3:39787345-39787364 | Msa0451570:intron | 40.0% |
| ! | CACTCCTGATCTGTCTTTTA+TGG | + | chr3_3:39787410-39787429 | None:intergenic | 40.0% |
| CATAAAAGACAGATCAGGAG+TGG | - | chr3_3:39787408-39787427 | Msa0451570:intron | 40.0% | |
| CGACCTGTGTTTAAGAGAAT+AGG | + | chr3_3:39787639-39787658 | None:intergenic | 40.0% | |
| TTGCTGTCACCGAAAATACA+AGG | - | chr3_3:39787854-39787873 | Msa0451570:intron | 40.0% | |
| GTCACCGAAAATACAAGGAA+TGG | - | chr3_3:39787859-39787878 | Msa0451570:intron | 40.0% | |
| ! | TGATTTAAGGCATGTGTACC+AGG | - | chr3_3:39787951-39787970 | Msa0451570:CDS | 40.0% |
| TGCTATGGGGAAGTTCTTGA+TGG | - | chr3_3:39785392-39785411 | Msa0451570:intron | 45.0% | |
| AGGCTGATATCAACCCACTT+GGG | - | chr3_3:39785503-39785522 | Msa0451570:CDS | 45.0% | |
| TGATATCAACCCACTTGGGT+TGG | - | chr3_3:39785507-39785526 | Msa0451570:intron | 45.0% | |
| ! | CATCAAGAGCATGGTCAACA+AGG | + | chr3_3:39785554-39785573 | None:intergenic | 45.0% |
| TCTTCACAAGTGTCAACCAG+GGG | - | chr3_3:39786342-39786361 | Msa0451570:intron | 45.0% | |
| TCTATAAGTAACAGTCCCCC+TGG | + | chr3_3:39786361-39786380 | None:intergenic | 45.0% | |
| ! | ACAGTACTGGACACACTAGA+TGG | - | chr3_3:39786388-39786407 | Msa0451570:intron | 45.0% |
| ! | ATTGCCGTCGTGTTTTGCTA+AGG | - | chr3_3:39787206-39787225 | Msa0451570:intron | 45.0% |
| GGTCCACAAGAAAAATGGCA+AGG | - | chr3_3:39787296-39787315 | Msa0451570:intron | 45.0% | |
| TACTTCAGGGATGGTTGGAT+AGG | - | chr3_3:39787321-39787340 | Msa0451570:intron | 45.0% | |
| ACTTCAGGGATGGTTGGATA+GGG | - | chr3_3:39787322-39787341 | Msa0451570:intron | 45.0% | |
| ! | GGATAGGGTTTAATTGGCCT+TGG | - | chr3_3:39787337-39787356 | Msa0451570:intron | 45.0% |
| !! | GTTTAATTGGCCTTGGTGCA+TGG | - | chr3_3:39787344-39787363 | Msa0451570:intron | 45.0% |
| ATCACCATGCTGCCATCATT+TGG | + | chr3_3:39787484-39787503 | None:intergenic | 45.0% | |
| !! | ACATCTTCTGACATCGACTC+TGG | - | chr3_3:39787535-39787554 | Msa0451570:intron | 45.0% |
| !! | TGACATCGACTCTGGATATC+TGG | - | chr3_3:39787543-39787562 | Msa0451570:intron | 45.0% |
| CTTAAACACAGGTCGTGTCT+TGG | - | chr3_3:39787644-39787663 | Msa0451570:intron | 45.0% | |
| TTTGAAGGATTGGAGGTGAC+TGG | - | chr3_3:39787782-39787801 | Msa0451570:CDS | 45.0% | |
| GCGAGAAGTAATGGTTAACC+TGG | + | chr3_3:39787972-39787991 | None:intergenic | 45.0% | |
| ACTGGACTCTCTTCCTAACT+GGG | + | chr3_3:39787999-39788018 | None:intergenic | 45.0% | |
| AGTTAGGAAGAGAGTCCAGT+GGG | - | chr3_3:39787999-39788018 | Msa0451570:CDS | 45.0% | |
| GAGGCTGATATCAACCCACT+TGG | - | chr3_3:39785502-39785521 | Msa0451570:CDS | 50.0% | |
| ACCACTAGACCAACCCAAGT+GGG | + | chr3_3:39785519-39785538 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCTAGTGGTGT+TGG | - | chr3_3:39785521-39785540 | Msa0451570:intron | 50.0% |
| !! | TTGGTCTAGTGGTGTTGGCT+TGG | - | chr3_3:39785526-39785545 | Msa0451570:intron | 50.0% |
| !! | TGGTCTAGTGGTGTTGGCTT+GGG | - | chr3_3:39785527-39785546 | Msa0451570:intron | 50.0% |
| GATCTCAAGCTCCACGTAGT+AGG | + | chr3_3:39786235-39786254 | None:intergenic | 50.0% | |
| CTTCACAAGTGTCAACCAGG+GGG | - | chr3_3:39786343-39786362 | Msa0451570:intron | 50.0% | |
| AGGTGTACTTCAGGGATGGT+TGG | - | chr3_3:39787316-39787335 | Msa0451570:intron | 50.0% | |
| TAATGCTGACCCATGCACCA+AGG | + | chr3_3:39787357-39787376 | None:intergenic | 50.0% | |
| AGACAGATCAGGAGTGGAAG+TGG | - | chr3_3:39787414-39787433 | Msa0451570:intron | 50.0% | |
| CACTCCAAATGATGGCAGCA+TGG | - | chr3_3:39787477-39787496 | Msa0451570:intron | 50.0% | |
| ACACAGGTCGTGTCTTGGTT+TGG | - | chr3_3:39787649-39787668 | Msa0451570:intron | 50.0% | |
| !! | GTCTTGGTTTGGTTTCTGCG+AGG | - | chr3_3:39787660-39787679 | Msa0451570:intron | 50.0% |
| CTTATGTGCAGCGCGTAACT+TGG | - | chr3_3:39787810-39787829 | Msa0451570:CDS | 50.0% | |
| CACTGGACTCTCTTCCTAAC+TGG | + | chr3_3:39788000-39788019 | None:intergenic | 50.0% | |
| CAGTTAGGAAGAGAGTCCAG+TGG | - | chr3_3:39787998-39788017 | Msa0451570:CDS | 50.0% | |
| !! | ACCCACTTGGGTTGGTCTAG+TGG | - | chr3_3:39785515-39785534 | Msa0451570:intron | 55.0% |
| CACCACTAGACCAACCCAAG+TGG | + | chr3_3:39785520-39785539 | None:intergenic | 55.0% | |
| TACGATTATGGTCGCGGTGC+TGG | - | chr3_3:39785809-39785828 | Msa0451570:intron | 55.0% | |
| GGCAAGGTGTACTTCAGGGA+TGG | - | chr3_3:39787312-39787331 | Msa0451570:intron | 55.0% | |
| GCAGCGCGTAACTTGGTCAA+AGG | - | chr3_3:39787817-39787836 | Msa0451570:intron | 55.0% | |
| ! | CTGGGCACTGCGAGAAGTAA+TGG | + | chr3_3:39787981-39788000 | None:intergenic | 55.0% |
| ACTTCTCGCAGTGCCCAGTT+AGG | - | chr3_3:39787983-39788002 | Msa0451570:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 39785147 | 39788032 | 39785147 | ID=Msa0451570;Name=Msa0451570 |
| chr3_3 | mRNA | 39785147 | 39788032 | 39785147 | ID=Msa0451570-mRNA-1;Parent=Msa0451570;Name=Msa0451570-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.25|0|0.6|1|1|5|0|224 |
| chr3_3 | exon | 39787909 | 39788032 | 39787909 | ID=Msa0451570-mRNA-1:exon:7222;Parent=Msa0451570-mRNA-1 |
| chr3_3 | exon | 39787766 | 39787834 | 39787766 | ID=Msa0451570-mRNA-1:exon:7221;Parent=Msa0451570-mRNA-1 |
| chr3_3 | exon | 39785615 | 39785763 | 39785615 | ID=Msa0451570-mRNA-1:exon:7220;Parent=Msa0451570-mRNA-1 |
| chr3_3 | exon | 39785436 | 39785524 | 39785436 | ID=Msa0451570-mRNA-1:exon:7219;Parent=Msa0451570-mRNA-1 |
| chr3_3 | exon | 39785147 | 39785390 | 39785147 | ID=Msa0451570-mRNA-1:exon:7218;Parent=Msa0451570-mRNA-1 |
| chr3_3 | CDS | 39787909 | 39788032 | 39787909 | ID=Msa0451570-mRNA-1:cds;Parent=Msa0451570-mRNA-1 |
| chr3_3 | CDS | 39787766 | 39787834 | 39787766 | ID=Msa0451570-mRNA-1:cds;Parent=Msa0451570-mRNA-1 |
| chr3_3 | CDS | 39785615 | 39785763 | 39785615 | ID=Msa0451570-mRNA-1:cds;Parent=Msa0451570-mRNA-1 |
| chr3_3 | CDS | 39785436 | 39785524 | 39785436 | ID=Msa0451570-mRNA-1:cds;Parent=Msa0451570-mRNA-1 |
| chr3_3 | CDS | 39785147 | 39785390 | 39785147 | ID=Msa0451570-mRNA-1:cds;Parent=Msa0451570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
