Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500540 | CAA43779.1 | 74.442 | 403 | 99 | 2 | 4 | 402 | 15 | 417 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500540 | sp|P28011|AAT1_MEDSA | 74.194 | 403 | 100 | 2 | 4 | 402 | 16 | 418 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500540 | I3SJC8 | 74.442 | 403 | 99 | 2 | 4 | 402 | 16 | 418 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0500520 | Msa0500540 | 0.900148 | 9.788210e-78 | -8.615850e-47 |
| Msa0500530 | Msa0500540 | 0.922923 | 5.221478e-89 | -8.615850e-47 |
| Msa0500540 | Msa0719080 | 0.822097 | 2.841866e-53 | -8.615850e-47 |
| Msa0500540 | Msa0719090 | 0.821999 | 2.994193e-53 | -8.615850e-47 |
| Msa0500540 | Msa1077610 | 0.823019 | 1.734998e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500540 | MtrunA17_Chr3g0139821 | 74.442 | 403 | 99 | 2 | 4 | 402 | 56 | 458 | 0.0 | 599 |
| Msa0500540 | MtrunA17_Chr1g0149721 | 47.222 | 396 | 203 | 4 | 4 | 394 | 63 | 457 | 1.28e-123 | 365 |
| Msa0500540 | MtrunA17_Chr4g0041371 | 43.500 | 400 | 220 | 3 | 3 | 398 | 24 | 421 | 2.96e-111 | 332 |
| Msa0500540 | MtrunA17_Chr4g0041351 | 44.206 | 233 | 128 | 1 | 168 | 398 | 3 | 235 | 1.32e-65 | 209 |
| Msa0500540 | MtrunA17_Chr4g0041361 | 38.806 | 134 | 77 | 3 | 3 | 133 | 19 | 150 | 5.26e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500540 | AT5G11520.1 | 66.749 | 403 | 130 | 2 | 2 | 400 | 45 | 447 | 0.0 | 553 |
| Msa0500540 | AT5G19550.1 | 66.253 | 403 | 132 | 2 | 4 | 402 | 3 | 405 | 0.0 | 551 |
| Msa0500540 | AT1G62800.2 | 60.546 | 403 | 155 | 2 | 4 | 402 | 3 | 405 | 4.82e-180 | 507 |
| Msa0500540 | AT1G62800.1 | 60.050 | 403 | 155 | 3 | 4 | 402 | 3 | 403 | 9.66e-177 | 498 |
| Msa0500540 | AT1G62800.3 | 58.209 | 335 | 136 | 2 | 4 | 334 | 3 | 337 | 7.52e-142 | 407 |
| Msa0500540 | AT4G31990.1 | 45.707 | 396 | 209 | 4 | 4 | 394 | 51 | 445 | 1.88e-121 | 360 |
| Msa0500540 | AT4G31990.2 | 45.707 | 396 | 209 | 4 | 4 | 394 | 51 | 445 | 1.88e-121 | 360 |
| Msa0500540 | AT4G31990.4 | 45.707 | 396 | 209 | 4 | 4 | 394 | 46 | 440 | 2.17e-121 | 359 |
| Msa0500540 | AT4G31990.3 | 45.707 | 396 | 209 | 4 | 4 | 394 | 51 | 445 | 4.79e-121 | 359 |
| Msa0500540 | AT2G30970.1 | 42.967 | 391 | 217 | 3 | 12 | 398 | 39 | 427 | 4.64e-109 | 327 |
| Msa0500540 | AT2G30970.2 | 42.967 | 391 | 217 | 3 | 12 | 398 | 39 | 427 | 4.64e-109 | 327 |
Find 99 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTCAAGTTGAGCTTATT+TGG | 0.098450 | 3_4:-41045970 | None:intergenic |
| TATACTTGCCAGAACCTATT+TGG | 0.159867 | 3_4:+41047176 | Msa0500540:CDS |
| GCAAAGAACGTGGGTCTTTA+TGG | 0.183677 | 3_4:+41047884 | Msa0500540:CDS |
| CATTCACGGTGCATCCATTC+TGG | 0.287990 | 3_4:+41048264 | Msa0500540:CDS |
| CAAGACAATGGGATCATATT+AGG | 0.303078 | 3_4:+41047501 | Msa0500540:CDS |
| CAACAGACTGTTCGTTTGTT+TGG | 0.306514 | 3_4:+41047824 | Msa0500540:CDS |
| CACTCAAGTTGAGCTTATTT+GGG | 0.308914 | 3_4:-41045969 | None:intergenic |
| TTTGAAAGATGGTCCCAAAT+AGG | 0.316347 | 3_4:-41047190 | None:intergenic |
| CATCAGATGTCATGTATATA+TGG | 0.321584 | 3_4:-41048832 | None:intergenic |
| TGATCCCATTGTCTTGGGTT+TGG | 0.333418 | 3_4:-41047494 | None:intergenic |
| ATTGGAATGTTTACTATCAT+AGG | 0.339602 | 3_4:+41048770 | Msa0500540:CDS |
| TGATGATGGTGGTGATTTGC+TGG | 0.340789 | 3_4:+41047847 | Msa0500540:CDS |
| AAATCAAGCCCTCGTGTTGC+TGG | 0.349467 | 3_4:-41047262 | None:intergenic |
| AAAGAGTATATTCCAATTGT+TGG | 0.353866 | 3_4:+41046789 | Msa0500540:CDS |
| TAATATGATCCCATTGTCTT+GGG | 0.365788 | 3_4:-41047499 | None:intergenic |
| GATCTTCAGTCTGCCCCATC+TGG | 0.380711 | 3_4:+41047422 | Msa0500540:CDS |
| GCGAGCTGAACGCCAACTAT+TGG | 0.381718 | 3_4:+41046652 | Msa0500540:CDS |
| GCTGGTTGAAACTTGTGATT+TGG | 0.382772 | 3_4:+41048221 | Msa0500540:CDS |
| GTTACTTACACTGTGATCTT+CGG | 0.388842 | 3_4:-41045647 | None:intergenic |
| GCATGTGGACATAACCCAAC+TGG | 0.390483 | 3_4:+41047464 | Msa0500540:CDS |
| ACCACTGTTCAATGCCTATC+TGG | 0.392733 | 3_4:+41046989 | Msa0500540:CDS |
| ATACTTGCCAGAACCTATTT+GGG | 0.393809 | 3_4:+41047177 | Msa0500540:CDS |
| TTACTTACACTGTGATCTTC+GGG | 0.394718 | 3_4:-41045646 | None:intergenic |
| GTTCGTTTGTTTGGTGATGA+TGG | 0.402233 | 3_4:+41047833 | Msa0500540:CDS |
| CTAATATGATCCCATTGTCT+TGG | 0.411145 | 3_4:-41047500 | None:intergenic |
| GAACAGATGCCCCAGGTGAT+TGG | 0.415220 | 3_4:+41048729 | Msa0500540:intron |
| CAGAATGGATGCACCGTGAA+TGG | 0.416931 | 3_4:-41048263 | None:intergenic |
| TCAGAGATTTGTGCAATGAA+TGG | 0.432097 | 3_4:+41048437 | Msa0500540:intron |
| AAATCAGCCAGTCCAACAAT+TGG | 0.433068 | 3_4:-41046801 | None:intergenic |
| TTGTTCAACAGGGTCTTGCC+AGG | 0.435388 | 3_4:+41047789 | Msa0500540:intron |
| AGATGGTCCCAAATAGGTTC+TGG | 0.439211 | 3_4:-41047184 | None:intergenic |
| AAGTTGAGCTTATTTGGGCT+TGG | 0.444447 | 3_4:-41045964 | None:intergenic |
| TTTCATGCTTTACGAGCTAA+AGG | 0.446510 | 3_4:+41048514 | Msa0500540:CDS |
| AGTCATATTATCAATCAGAT+TGG | 0.447456 | 3_4:+41048752 | Msa0500540:CDS |
| CTTGAGAATGGCAGCCAGAA+TGG | 0.452499 | 3_4:-41048278 | None:intergenic |
| TACTCAAGTCCTCCCATTCA+CGG | 0.454048 | 3_4:+41048250 | Msa0500540:CDS |
| GGTTTGGATCAACCCCAGTT+GGG | 0.468708 | 3_4:-41047478 | None:intergenic |
| TGAAAAGCATTGTCAACAAA+AGG | 0.473734 | 3_4:-41047551 | None:intergenic |
| ATAGGAGTCTAACCTCAGTT+TGG | 0.478751 | 3_4:-41046002 | None:intergenic |
| GGAAGGCAAACCCCTTGTCT+TGG | 0.479826 | 3_4:+41046619 | Msa0500540:intron |
| CATATATACATGACATCTGA+TGG | 0.482314 | 3_4:+41048833 | Msa0500540:CDS |
| GGGTTTGGATCAACCCCAGT+TGG | 0.487214 | 3_4:-41047479 | None:intergenic |
| CTGGCTGCCATTCTCAAGGA+TGG | 0.489314 | 3_4:+41048283 | Msa0500540:CDS |
| AATGAATGGACTACTGAGTT+GGG | 0.493091 | 3_4:+41048451 | Msa0500540:CDS |
| ATGAACAAGATGAGCGAAAA+GGG | 0.500986 | 3_4:-41045620 | None:intergenic |
| AATGGGAGGACTTGAGTACA+TGG | 0.504572 | 3_4:-41048245 | None:intergenic |
| GTATATTCCAATTGTTGGAC+TGG | 0.504812 | 3_4:+41046794 | Msa0500540:CDS |
| CATGAACAAGATGAGCGAAA+AGG | 0.506435 | 3_4:-41045621 | None:intergenic |
| AGTCAGCTGATGTTGCAAGC+AGG | 0.506972 | 3_4:+41048191 | Msa0500540:CDS |
| AGAATGGATGCACCGTGAAT+GGG | 0.508532 | 3_4:-41048262 | None:intergenic |
| TGATCCAAACCCAAGACAAT+GGG | 0.510150 | 3_4:+41047490 | Msa0500540:CDS |
| TAAATTTCTTACAATGCTCA+AGG | 0.515351 | 3_4:-41047921 | None:intergenic |
| TTCTGAGCAAGTTTCCCTCA+TGG | 0.518259 | 3_4:+41048799 | Msa0500540:CDS |
| GTCAGCTGATGTTGCAAGCA+GGG | 0.520785 | 3_4:+41048192 | Msa0500540:CDS |
| TTAATGCACCGGTACCAGAT+AGG | 0.529697 | 3_4:-41047003 | None:intergenic |
| CTCAGAAACAGTCACACGCC+TGG | 0.533058 | 3_4:+41049773 | Msa0500540:CDS |
| TTGCAAGCAGGGTTGAGAGC+TGG | 0.538280 | 3_4:+41048203 | Msa0500540:CDS |
| GCAAAACAGCAGATCCAGAT+GGG | 0.542021 | 3_4:-41047436 | None:intergenic |
| CAATGAATGGACTACTGAGT+TGG | 0.544294 | 3_4:+41048450 | Msa0500540:CDS |
| TAACTACCCATCCTTGAGAA+TGG | 0.546491 | 3_4:-41048290 | None:intergenic |
| CATGTGGACATAACCCAACT+GGG | 0.552395 | 3_4:+41047465 | Msa0500540:CDS |
| CATTCTGGCTGCCATTCTCA+AGG | 0.554482 | 3_4:+41048279 | Msa0500540:CDS |
| CTGACACGTCATCCAATAGT+TGG | 0.560302 | 3_4:-41046664 | None:intergenic |
| GTTCAATGCCTATCTGGTAC+CGG | 0.561256 | 3_4:+41046995 | Msa0500540:CDS |
| CGTTTGTTTGGTGATGATGG+TGG | 0.566331 | 3_4:+41047836 | Msa0500540:CDS |
| TTGATCCAAACCCAAGACAA+TGG | 0.568711 | 3_4:+41047489 | Msa0500540:CDS |
| GGTCTTTATGGAGAACAAGT+TGG | 0.577688 | 3_4:+41047896 | Msa0500540:CDS |
| ATAATATGACTCCAATCACC+TGG | 0.580058 | 3_4:-41048740 | None:intergenic |
| TTTAATGGAACAGATGCCCC+AGG | 0.582177 | 3_4:+41048722 | Msa0500540:intron |
| AGCACCAACTCTTAATGCAC+CGG | 0.584815 | 3_4:-41047014 | None:intergenic |
| TACTATGCTCCAGCAACACG+AGG | 0.590969 | 3_4:+41047253 | Msa0500540:CDS |
| TGGCTGCCATTCTCAAGGAT+GGG | 0.593533 | 3_4:+41048284 | Msa0500540:CDS |
| AGCAAAACAGCAGATCCAGA+TGG | 0.600645 | 3_4:-41047437 | None:intergenic |
| GCTGGAGCATAGTAACGATA+CGG | 0.604166 | 3_4:-41047244 | None:intergenic |
| CTGCATGTATTGCATCCACC+AGG | 0.606327 | 3_4:-41049791 | None:intergenic |
| ATATATACATGACATCTGAT+GGG | 0.609801 | 3_4:+41048834 | Msa0500540:CDS |
| ATGGTGCTCGTCAGCCATGA+GGG | 0.611445 | 3_4:-41048813 | None:intergenic |
| TTCACTACATCCAAGACAAG+GGG | 0.615824 | 3_4:-41046629 | None:intergenic |
| GGTACCGGTGCATTAAGAGT+TGG | 0.618999 | 3_4:+41047010 | Msa0500540:CDS |
| TGTTCAACAGGGTCTTGCCA+GGG | 0.620103 | 3_4:+41047790 | Msa0500540:intron |
| CTGTTGATCTGAGTTTACCC+TGG | 0.626439 | 3_4:-41047807 | None:intergenic |
| ATGGATGCACCGTGAATGGG+AGG | 0.634202 | 3_4:-41048259 | None:intergenic |
| TAATATGACTCCAATCACCT+GGG | 0.634881 | 3_4:-41048739 | None:intergenic |
| GTTCCTTATAGGACTTCTAG+AGG | 0.636654 | 3_4:+41047400 | Msa0500540:intron |
| ATGAATGGACTACTGAGTTG+GGG | 0.643660 | 3_4:+41048452 | Msa0500540:CDS |
| GCTTCACTACATCCAAGACA+AGG | 0.646727 | 3_4:-41046631 | None:intergenic |
| TCAGACTTATGCAAAGAACG+TGG | 0.646847 | 3_4:+41047874 | Msa0500540:CDS |
| AGAAACAGTCACACGCCTGG+TGG | 0.655232 | 3_4:+41049776 | Msa0500540:CDS |
| CTTCACTACATCCAAGACAA+GGG | 0.657417 | 3_4:-41046630 | None:intergenic |
| TATGGTGCTCGTCAGCCATG+AGG | 0.661587 | 3_4:-41048814 | None:intergenic |
| CAGACTTATGCAAAGAACGT+GGG | 0.667813 | 3_4:+41047875 | Msa0500540:CDS |
| ACCAGATAGGCATTGAACAG+TGG | 0.668297 | 3_4:-41046990 | None:intergenic |
| TGAATGGACTACTGAGTTGG+GGG | 0.671571 | 3_4:+41048453 | Msa0500540:CDS |
| CAAAACAGCAGATCCAGATG+GGG | 0.708863 | 3_4:-41047435 | None:intergenic |
| ATGGGAGGACTTGAGTACAT+GGG | 0.712779 | 3_4:-41048244 | None:intergenic |
| ACTATGCTCCAGCAACACGA+GGG | 0.720927 | 3_4:+41047254 | Msa0500540:CDS |
| AATATGACTCCAATCACCTG+GGG | 0.734624 | 3_4:-41048738 | None:intergenic |
| TGCTGATGATTACCAAACTG+AGG | 0.734713 | 3_4:+41045990 | Msa0500540:CDS |
| ATGTGGACATAACCCAACTG+GGG | 0.811753 | 3_4:+41047466 | Msa0500540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTTATATAAAAA+TGG | + | chr3_4:41048091-41048110 | Msa0500540:intron | 0.0% |
| !! | GATATTAATTAATAAATTGT+AGG | - | chr3_4:41045725-41045744 | None:intergenic | 10.0% |
| !!! | TTTTGATATAAAATATAAGT+TGG | + | chr3_4:41046335-41046354 | Msa0500540:intron | 10.0% |
| !! | AATATTAGTTAAAAAAATAG+AGG | - | chr3_4:41047096-41047115 | None:intergenic | 10.0% |
| !! | AAAAAGATATTTAACAATAT+TGG | - | chr3_4:41047598-41047617 | None:intergenic | 10.0% |
| !!! | TTTTTTTATATAAAAATGGT+TGG | + | chr3_4:41048095-41048114 | Msa0500540:intron | 10.0% |
| !!! | ATATATTTTAACAATTTCTT+CGG | + | chr3_4:41048551-41048570 | Msa0500540:intron | 10.0% |
| !! | CTTATTGTTATATTTAAAAA+GGG | + | chr3_4:41049346-41049365 | Msa0500540:intron | 10.0% |
| !! | AATACAATCTAAATATTACA+AGG | - | chr3_4:41045792-41045811 | None:intergenic | 15.0% |
| !! | TAATCAATCATTAATGAAAT+TGG | - | chr3_4:41045885-41045904 | None:intergenic | 15.0% |
| !!! | TTTTTATGTGTTTGAAAAAT+AGG | + | chr3_4:41045918-41045937 | Msa0500540:intron | 15.0% |
| !!! | AATTTTAGTTCTTAATCATT+TGG | + | chr3_4:41046038-41046057 | Msa0500540:intron | 15.0% |
| !!! | ATTTTAGTTCTTAATCATTT+GGG | + | chr3_4:41046039-41046058 | Msa0500540:intron | 15.0% |
| !! | AATTATGTAAAAGATGATTA+TGG | - | chr3_4:41046495-41046514 | None:intergenic | 15.0% |
| !!! | TAATCATCTTTTACATAATT+TGG | + | chr3_4:41046495-41046514 | Msa0500540:intron | 15.0% |
| !!! | AAGAAATTTAAAGCATTAAT+TGG | + | chr3_4:41047934-41047953 | Msa0500540:intron | 15.0% |
| !!! | TGTTAAAATATATTTTGTAG+AGG | - | chr3_4:41048544-41048563 | None:intergenic | 15.0% |
| !! | AAAAATAAGTACAAATTTCA+TGG | - | chr3_4:41048700-41048719 | None:intergenic | 15.0% |
| !! | AAATAAACATATATGTATGA+TGG | - | chr3_4:41049313-41049332 | None:intergenic | 15.0% |
| !! | GCTTATTGTTATATTTAAAA+AGG | + | chr3_4:41049345-41049364 | Msa0500540:intron | 15.0% |
| !! | TAAATAAATGATTACAATGA+GGG | - | chr3_4:41049685-41049704 | None:intergenic | 15.0% |
| !! | ATAAATAAATGATTACAATG+AGG | - | chr3_4:41049686-41049705 | None:intergenic | 15.0% |
| !! | AAATTCAAGCAAAAACAAAT+AGG | - | chr3_4:41046023-41046042 | None:intergenic | 20.0% |
| !! | ATAAGATGATTATTCAAACA+AGG | - | chr3_4:41046238-41046257 | None:intergenic | 20.0% |
| !!! | AAAATATAAGTTGGTTTCAA+AGG | + | chr3_4:41046344-41046363 | Msa0500540:intron | 20.0% |
| !! | ATTAGTTAAAAAAATAGAGG+AGG | - | chr3_4:41047093-41047112 | None:intergenic | 20.0% |
| !! | TTAACTAATATTGCAGTATA+TGG | + | chr3_4:41047104-41047123 | Msa0500540:intron | 20.0% |
| !!! | AATATTGGTTAAATGCAAAA+AGG | - | chr3_4:41047583-41047602 | None:intergenic | 20.0% |
| !!! | ATTAATTGGAGACAATTTTT+TGG | + | chr3_4:41047948-41047967 | Msa0500540:intron | 20.0% |
| !!! | TTAATTGGAGACAATTTTTT+GGG | + | chr3_4:41047949-41047968 | Msa0500540:intron | 20.0% |
| !!! | TTAAAGAACATTTTAACTAC+TGG | - | chr3_4:41048121-41048140 | None:intergenic | 20.0% |
| !!! | TGTACTTATTTTTCCTTTAA+TGG | + | chr3_4:41048707-41048726 | Msa0500540:intron | 20.0% |
| !! | AAAATATTAATCCATGATGT+AGG | - | chr3_4:41049656-41049675 | None:intergenic | 20.0% |
| !!! | TACATCATGGATTAATATTT+TGG | + | chr3_4:41049655-41049674 | Msa0500540:intron | 20.0% |
| !! | GTCTTTGAAAATGAATGTTA+AGG | + | chr3_4:41046517-41046536 | Msa0500540:intron | 25.0% |
| !! | AAAGAGTATATTCCAATTGT+TGG | + | chr3_4:41046789-41046808 | Msa0500540:CDS | 25.0% |
| ! | AAATTAGCAAAAGAACAGTT+AGG | - | chr3_4:41046932-41046951 | None:intergenic | 25.0% |
| !! | ATAATTTTGTGTGGACAAAT+CGG | - | chr3_4:41047710-41047729 | None:intergenic | 25.0% |
| !! | GCTAGAAATATAATTTTGTG+TGG | - | chr3_4:41047719-41047738 | None:intergenic | 25.0% |
| !!! | AATATCCATTTTTGTTCAAC+AGG | + | chr3_4:41047778-41047797 | Msa0500540:intron | 25.0% |
| !!! | ATATCCATTTTTGTTCAACA+GGG | + | chr3_4:41047779-41047798 | Msa0500540:intron | 25.0% |
| ! | TAAATTTCTTACAATGCTCA+AGG | - | chr3_4:41047924-41047943 | None:intergenic | 25.0% |
| ! | TAAGACTGAAATCATAATCA+GGG | - | chr3_4:41048035-41048054 | None:intergenic | 25.0% |
| ! | AGTCATATTATCAATCAGAT+TGG | + | chr3_4:41048752-41048771 | Msa0500540:CDS | 25.0% |
| ! | ATTGGAATGTTTACTATCAT+AGG | + | chr3_4:41048770-41048789 | Msa0500540:CDS | 25.0% |
| ! | ATATATACATGACATCTGAT+GGG | + | chr3_4:41048834-41048853 | Msa0500540:CDS | 25.0% |
| ! | AAAGAAATTGGACAATTTCA+AGG | - | chr3_4:41048973-41048992 | None:intergenic | 25.0% |
| ! | ATAAAGTCCACGAAATATTA+TGG | - | chr3_4:41049224-41049243 | None:intergenic | 25.0% |
| !!! | GATTGTGTACATCTTTTTTA+AGG | + | chr3_4:41049568-41049587 | Msa0500540:intron | 25.0% |
| CACAACAAAACAATTGTAAC+AGG | - | chr3_4:41045817-41045836 | None:intergenic | 30.0% | |
| ATAAACACAACTTATGACAC+TGG | - | chr3_4:41046404-41046423 | None:intergenic | 30.0% | |
| !! | TTGAGTGCTAAGCTTATTTT+TGG | + | chr3_4:41046831-41046850 | Msa0500540:CDS | 30.0% |
| GGAAAGTTAATAACAACATC+AGG | - | chr3_4:41046880-41046899 | None:intergenic | 30.0% | |
| ! | ATGTTGTTATTAACTTTCCG+TGG | + | chr3_4:41046881-41046900 | Msa0500540:intron | 30.0% |
| GGTAAGAATATTTACAACCA+CGG | - | chr3_4:41046901-41046920 | None:intergenic | 30.0% | |
| TAGCAAAAGAACACTTTACT+TGG | - | chr3_4:41047063-41047082 | None:intergenic | 30.0% | |
| TAATATTGCAGTATATGGTC+TGG | + | chr3_4:41047109-41047128 | Msa0500540:intron | 30.0% | |
| AATATTGCAGTATATGGTCT+GGG | + | chr3_4:41047110-41047129 | Msa0500540:intron | 30.0% | |
| TCAAGGCAATCATCAAAAAA+AGG | - | chr3_4:41047140-41047159 | None:intergenic | 30.0% | |
| ! | AAGTATATAGCCTTCTGAAA+AGG | - | chr3_4:41047163-41047182 | None:intergenic | 30.0% |
| !! | GACTGAAAACTTTTGAAAGA+TGG | - | chr3_4:41047204-41047223 | None:intergenic | 30.0% |
| ! | TCTTTCAAAAGTTTTCAGTC+TGG | + | chr3_4:41047204-41047223 | Msa0500540:CDS | 30.0% |
| TGATAGAATGATTTCAAACC+AGG | - | chr3_4:41047289-41047308 | None:intergenic | 30.0% | |
| TAATATGATCCCATTGTCTT+GGG | - | chr3_4:41047502-41047521 | None:intergenic | 30.0% | |
| !! | TGAAAAGCATTGTCAACAAA+AGG | - | chr3_4:41047554-41047573 | None:intergenic | 30.0% |
| ! | TTTTGTTGACAATGCTTTTC+AGG | + | chr3_4:41047553-41047572 | Msa0500540:CDS | 30.0% |
| CTAGTAGATTATACTCTCAA+TGG | - | chr3_4:41047631-41047650 | None:intergenic | 30.0% | |
| TTCAAGAGATTTCAAATGGT+TGG | - | chr3_4:41047676-41047695 | None:intergenic | 30.0% | |
| AGGATTCAAGAGATTTCAAA+TGG | - | chr3_4:41047680-41047699 | None:intergenic | 30.0% | |
| !!! | GACAATTTTTTGGGTTTCAT+CGG | + | chr3_4:41047958-41047977 | Msa0500540:intron | 30.0% |
| GTAAGACTGAAATCATAATC+AGG | - | chr3_4:41048036-41048055 | None:intergenic | 30.0% | |
| TAAGAAAAGCAGATGAATCT+TGG | - | chr3_4:41048317-41048336 | None:intergenic | 30.0% | |
| !! | ATTCATCTGCTTTTCTTAGT+GGG | + | chr3_4:41048319-41048338 | Msa0500540:intron | 30.0% |
| CATCAGATGTCATGTATATA+TGG | - | chr3_4:41048835-41048854 | None:intergenic | 30.0% | |
| CATATATACATGACATCTGA+TGG | + | chr3_4:41048833-41048852 | Msa0500540:CDS | 30.0% | |
| TTTCAAGGTAAACAAGTTAC+AGG | - | chr3_4:41048958-41048977 | None:intergenic | 30.0% | |
| TAGTTCACAGCAAAAGAAAT+TGG | - | chr3_4:41048985-41049004 | None:intergenic | 30.0% | |
| TTGAATCAAGTCATCATTCA+TGG | + | chr3_4:41049042-41049061 | Msa0500540:intron | 30.0% | |
| TAGGGAAAAGATGAAAAAGA+GGG | - | chr3_4:41049131-41049150 | None:intergenic | 30.0% | |
| ! | TTTCATCTTTTCCCTACTTT+TGG | + | chr3_4:41049135-41049154 | Msa0500540:intron | 30.0% |
| TAGTGTACCATAATATTTCG+TGG | + | chr3_4:41049214-41049233 | Msa0500540:intron | 30.0% | |
| !! | GGTCAATGTTTTTACACTAT+TGG | - | chr3_4:41049250-41049269 | None:intergenic | 30.0% |
| ! | TTTCACTAGTGCATTTTAGA+AGG | + | chr3_4:41049285-41049304 | Msa0500540:intron | 30.0% |
| TTGTTTACGAGAGTTTATCT+TGG | - | chr3_4:41049428-41049447 | None:intergenic | 30.0% | |
| ! | TAAAAGTATGTACTGTTTGC+TGG | + | chr3_4:41049466-41049485 | Msa0500540:intron | 30.0% |
| ATGAACAAGATGAGCGAAAA+GGG | - | chr3_4:41045623-41045642 | None:intergenic | 35.0% | |
| TTACTTACACTGTGATCTTC+GGG | - | chr3_4:41045649-41045668 | None:intergenic | 35.0% | |
| GTTACTTACACTGTGATCTT+CGG | - | chr3_4:41045650-41045669 | None:intergenic | 35.0% | |
| !! | CACTCAAGTTGAGCTTATTT+GGG | - | chr3_4:41045972-41045991 | None:intergenic | 35.0% |
| TGTAACAGTGTATTAGAACG+TGG | - | chr3_4:41046077-41046096 | None:intergenic | 35.0% | |
| GTATTCGTTATTGTTGTGTC+TGG | - | chr3_4:41046115-41046134 | None:intergenic | 35.0% | |
| ! | CATATCAGATGTGTCAGTTT+TGG | + | chr3_4:41046170-41046189 | Msa0500540:intron | 35.0% |
| ! | AGTGTCACAAGTCTTATGTT+AGG | + | chr3_4:41046438-41046457 | Msa0500540:intron | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr3_4:41046469-41046488 | Msa0500540:intron | 35.0% | |
| AAAGATGATTATGGCCTGTT+TGG | - | chr3_4:41046486-41046505 | None:intergenic | 35.0% | |
| !! | GAAATTCCTTGCTATTTACC+AGG | + | chr3_4:41046598-41046617 | Msa0500540:intron | 35.0% |
| ! | AAAAGAAAGTATAGCGAGTC+AGG | - | chr3_4:41046692-41046711 | None:intergenic | 35.0% |
| GTATATTCCAATTGTTGGAC+TGG | + | chr3_4:41046794-41046813 | Msa0500540:CDS | 35.0% | |
| !!! | AAGAGTTGGTGCTGAATTTT+TGG | + | chr3_4:41047024-41047043 | Msa0500540:CDS | 35.0% |
| TATACTTGCCAGAACCTATT+TGG | + | chr3_4:41047176-41047195 | Msa0500540:CDS | 35.0% | |
| ATACTTGCCAGAACCTATTT+GGG | + | chr3_4:41047177-41047196 | Msa0500540:CDS | 35.0% | |
| TTTGAAAGATGGTCCCAAAT+AGG | - | chr3_4:41047193-41047212 | None:intergenic | 35.0% | |
| TCCTATAAGGAACAAGATAG+GGG | - | chr3_4:41047393-41047412 | None:intergenic | 35.0% | |
| GTCCTATAAGGAACAAGATA+GGG | - | chr3_4:41047394-41047413 | None:intergenic | 35.0% | |
| AGTCCTATAAGGAACAAGAT+AGG | - | chr3_4:41047395-41047414 | None:intergenic | 35.0% | |
| CTAATATGATCCCATTGTCT+TGG | - | chr3_4:41047503-41047522 | None:intergenic | 35.0% | |
| CAAGACAATGGGATCATATT+AGG | + | chr3_4:41047501-41047520 | Msa0500540:CDS | 35.0% | |
| AAGACCCTGTTGAACAAAAA+TGG | - | chr3_4:41047786-41047805 | None:intergenic | 35.0% | |
| AATAAGACGAAATACAAGCC+CGG | - | chr3_4:41047998-41048017 | None:intergenic | 35.0% | |
| !! | GATTCATCTGCTTTTCTTAG+TGG | + | chr3_4:41048318-41048337 | Msa0500540:intron | 35.0% |
| !!! | TAGTGGGATGCTTTTTTTAG+TGG | + | chr3_4:41048335-41048354 | Msa0500540:intron | 35.0% |
| !!! | AGTGGGATGCTTTTTTTAGT+GGG | + | chr3_4:41048336-41048355 | Msa0500540:intron | 35.0% |
| !!! | ATGCTTTTTTTAGTGGGACT+AGG | + | chr3_4:41048342-41048361 | Msa0500540:intron | 35.0% |
| AGTGCGAAAGAAGAAAATGA+TGG | - | chr3_4:41048388-41048407 | None:intergenic | 35.0% | |
| ! | ATCATTTTCTTCTTTCGCAC+TGG | + | chr3_4:41048387-41048406 | Msa0500540:intron | 35.0% |
| ! | ATTGCACAAATCTCTGAAAG+AGG | - | chr3_4:41048434-41048453 | None:intergenic | 35.0% |
| TCAGAGATTTGTGCAATGAA+TGG | + | chr3_4:41048437-41048456 | Msa0500540:intron | 35.0% | |
| !! | AATGAATGGACTACTGAGTT+GGG | + | chr3_4:41048451-41048470 | Msa0500540:CDS | 35.0% |
| TTTCATGCTTTACGAGCTAA+AGG | + | chr3_4:41048514-41048533 | Msa0500540:CDS | 35.0% | |
| TGATAAAGAACCATCCAGAA+AGG | - | chr3_4:41048582-41048601 | None:intergenic | 35.0% | |
| AACAAGAACTTCACGCATAT+TGG | - | chr3_4:41048616-41048635 | None:intergenic | 35.0% | |
| AATCCTAGAAAGACTCTAGA+GGG | - | chr3_4:41048671-41048690 | None:intergenic | 35.0% | |
| AAATCCTAGAAAGACTCTAG+AGG | - | chr3_4:41048672-41048691 | None:intergenic | 35.0% | |
| TAATATGACTCCAATCACCT+GGG | - | chr3_4:41048742-41048761 | None:intergenic | 35.0% | |
| ATAATATGACTCCAATCACC+TGG | - | chr3_4:41048743-41048762 | None:intergenic | 35.0% | |
| TTGCTGTGAACTAAACTTGT+TGG | + | chr3_4:41048992-41049011 | Msa0500540:intron | 35.0% | |
| ! | TGCTGTGAACTAAACTTGTT+GGG | + | chr3_4:41048993-41049012 | Msa0500540:intron | 35.0% |
| GTAGGGAAAAGATGAAAAAG+AGG | - | chr3_4:41049132-41049151 | None:intergenic | 35.0% | |
| !! | GAATTTACTTTTCGTTGCTG+AGG | + | chr3_4:41049388-41049407 | Msa0500540:intron | 35.0% |
| ACAAGTTAATCACCAACGTA+AGG | - | chr3_4:41049537-41049556 | None:intergenic | 35.0% | |
| AAAAAGATGTACACAATCGC+AGG | - | chr3_4:41049566-41049585 | None:intergenic | 35.0% | |
| CATGAACAAGATGAGCGAAA+AGG | - | chr3_4:41045624-41045643 | None:intergenic | 40.0% | |
| AAGTTGAGCTTATTTGGGCT+TGG | - | chr3_4:41045967-41045986 | None:intergenic | 40.0% | |
| !! | GCACTCAAGTTGAGCTTATT+TGG | - | chr3_4:41045973-41045992 | None:intergenic | 40.0% |
| TGCTGATGATTACCAAACTG+AGG | + | chr3_4:41045990-41046009 | Msa0500540:CDS | 40.0% | |
| ATAGGAGTCTAACCTCAGTT+TGG | - | chr3_4:41046005-41046024 | None:intergenic | 40.0% | |
| !! | GTTGGTTTCAAAGGCTCTTT+TGG | + | chr3_4:41046353-41046372 | Msa0500540:intron | 40.0% |
| TGATTATGGCCTGTTTGGAT+TGG | - | chr3_4:41046481-41046500 | None:intergenic | 40.0% | |
| !! | TTCCTTGCTATTTACCAGGA+AGG | + | chr3_4:41046602-41046621 | Msa0500540:intron | 40.0% |
| TTCACTACATCCAAGACAAG+GGG | - | chr3_4:41046632-41046651 | None:intergenic | 40.0% | |
| CTTCACTACATCCAAGACAA+GGG | - | chr3_4:41046633-41046652 | None:intergenic | 40.0% | |
| AAATCAGCCAGTCCAACAAT+TGG | - | chr3_4:41046804-41046823 | None:intergenic | 40.0% | |
| !!! | AGCTTATTTTTGGTGCAGAC+AGG | + | chr3_4:41046841-41046860 | Msa0500540:CDS | 40.0% |
| AAGAACAGTTAGGAACTGAC+TGG | - | chr3_4:41046922-41046941 | None:intergenic | 40.0% | |
| ! | ATTGCCTTGACCTTTTCAGA+AGG | + | chr3_4:41047150-41047169 | Msa0500540:intron | 40.0% |
| ! | ATAGCCTTCTGAAAAGGTCA+AGG | - | chr3_4:41047157-41047176 | None:intergenic | 40.0% |
| ! | TCAAAAGTTTTCAGTCTGGC+AGG | + | chr3_4:41047208-41047227 | Msa0500540:CDS | 40.0% |
| TCCCCTATCTTGTTCCTTAT+AGG | + | chr3_4:41047389-41047408 | Msa0500540:intron | 40.0% | |
| GTTCCTTATAGGACTTCTAG+AGG | + | chr3_4:41047400-41047419 | Msa0500540:intron | 40.0% | |
| ! | GATCCTCTAGAAGTCCTATA+AGG | - | chr3_4:41047406-41047425 | None:intergenic | 40.0% |
| TTGATCCAAACCCAAGACAA+TGG | + | chr3_4:41047489-41047508 | Msa0500540:CDS | 40.0% | |
| TGATCCAAACCCAAGACAAT+GGG | + | chr3_4:41047490-41047509 | Msa0500540:CDS | 40.0% | |
| CAACAGACTGTTCGTTTGTT+TGG | + | chr3_4:41047824-41047843 | Msa0500540:CDS | 40.0% | |
| !! | GTTCGTTTGTTTGGTGATGA+TGG | + | chr3_4:41047833-41047852 | Msa0500540:CDS | 40.0% |
| TCAGACTTATGCAAAGAACG+TGG | + | chr3_4:41047874-41047893 | Msa0500540:CDS | 40.0% | |
| CAGACTTATGCAAAGAACGT+GGG | + | chr3_4:41047875-41047894 | Msa0500540:CDS | 40.0% | |
| GGTCTTTATGGAGAACAAGT+TGG | + | chr3_4:41047896-41047915 | Msa0500540:CDS | 40.0% | |
| GCTGGTTGAAACTTGTGATT+TGG | + | chr3_4:41048221-41048240 | Msa0500540:CDS | 40.0% | |
| TAACTACCCATCCTTGAGAA+TGG | - | chr3_4:41048293-41048312 | None:intergenic | 40.0% | |
| !! | CAATGAATGGACTACTGAGT+TGG | + | chr3_4:41048450-41048469 | Msa0500540:CDS | 40.0% |
| !! | ATGAATGGACTACTGAGTTG+GGG | + | chr3_4:41048452-41048471 | Msa0500540:CDS | 40.0% |
| ! | TTTCTTCGGCTTTTCCTTTC+TGG | + | chr3_4:41048565-41048584 | Msa0500540:intron | 40.0% |
| AATATGACTCCAATCACCTG+GGG | - | chr3_4:41048741-41048760 | None:intergenic | 40.0% | |
| !! | GCTGTGAACTAAACTTGTTG+GGG | + | chr3_4:41048994-41049013 | Msa0500540:intron | 40.0% |
| !! | CTGTGAACTAAACTTGTTGG+GGG | + | chr3_4:41048995-41049014 | Msa0500540:intron | 40.0% |
| ATCATTCATGGCCATGTCTA+CGG | + | chr3_4:41049054-41049073 | Msa0500540:intron | 40.0% | |
| AAAAAGAGGGAGCTTTCCAA+TGG | - | chr3_4:41049118-41049137 | None:intergenic | 40.0% | |
| GTGTAACTCTGCCAAAAGTA+GGG | - | chr3_4:41049149-41049168 | None:intergenic | 40.0% | |
| !! | CTACTTTTGGCAGAGTTACA+CGG | + | chr3_4:41049148-41049167 | Msa0500540:intron | 40.0% |
| ! | TTACACGGTGTAGATGGATT+GGG | + | chr3_4:41049163-41049182 | Msa0500540:intron | 40.0% |
| CTAGTGAAATAAGCAGTGCA+TGG | - | chr3_4:41049274-41049293 | None:intergenic | 40.0% | |
| ! | TATGTACTGTTTGCTGGTGT+AGG | + | chr3_4:41049472-41049491 | Msa0500540:intron | 40.0% |
| ACAGTGCATGTTGAGTCATA+TGG | - | chr3_4:41049718-41049737 | None:intergenic | 40.0% | |
| ACATGCACTGTTTATTGTCC+AGG | + | chr3_4:41049727-41049746 | Msa0500540:intron | 40.0% | |
| ACAAGACATGTTAATCCTCC+TGG | - | chr3_4:41049748-41049767 | None:intergenic | 40.0% | |
| TGCCTTCCTGGTAAATAGCA+AGG | - | chr3_4:41046607-41046626 | None:intergenic | 45.0% | |
| GCTTCACTACATCCAAGACA+AGG | - | chr3_4:41046634-41046653 | None:intergenic | 45.0% | |
| CTGACACGTCATCCAATAGT+TGG | - | chr3_4:41046667-41046686 | None:intergenic | 45.0% | |
| ACCACTGTTCAATGCCTATC+TGG | + | chr3_4:41046989-41047008 | Msa0500540:CDS | 45.0% | |
| !! | ACCAGATAGGCATTGAACAG+TGG | - | chr3_4:41046993-41047012 | None:intergenic | 45.0% |
| GTTCAATGCCTATCTGGTAC+CGG | + | chr3_4:41046995-41047014 | Msa0500540:CDS | 45.0% | |
| ! | TTAATGCACCGGTACCAGAT+AGG | - | chr3_4:41047006-41047025 | None:intergenic | 45.0% |
| AGCACCAACTCTTAATGCAC+CGG | - | chr3_4:41047017-41047036 | None:intergenic | 45.0% | |
| AGATGGTCCCAAATAGGTTC+TGG | - | chr3_4:41047187-41047206 | None:intergenic | 45.0% | |
| GCTGGAGCATAGTAACGATA+CGG | - | chr3_4:41047247-41047266 | None:intergenic | 45.0% | |
| CAAAACAGCAGATCCAGATG+GGG | - | chr3_4:41047438-41047457 | None:intergenic | 45.0% | |
| GCAAAACAGCAGATCCAGAT+GGG | - | chr3_4:41047439-41047458 | None:intergenic | 45.0% | |
| AGCAAAACAGCAGATCCAGA+TGG | - | chr3_4:41047440-41047459 | None:intergenic | 45.0% | |
| !! | GCTGTTTTGCTACATGCATG+TGG | + | chr3_4:41047449-41047468 | Msa0500540:CDS | 45.0% |
| CATGTGGACATAACCCAACT+GGG | + | chr3_4:41047465-41047484 | Msa0500540:CDS | 45.0% | |
| ATGTGGACATAACCCAACTG+GGG | + | chr3_4:41047466-41047485 | Msa0500540:CDS | 45.0% | |
| TGATCCCATTGTCTTGGGTT+TGG | - | chr3_4:41047497-41047516 | None:intergenic | 45.0% | |
| GTGGACAAATCGGAAGATTC+AGG | - | chr3_4:41047700-41047719 | None:intergenic | 45.0% | |
| CTGTTGATCTGAGTTTACCC+TGG | - | chr3_4:41047810-41047829 | None:intergenic | 45.0% | |
| !! | CGTTTGTTTGGTGATGATGG+TGG | + | chr3_4:41047836-41047855 | Msa0500540:CDS | 45.0% |
| !! | TGATGATGGTGGTGATTTGC+TGG | + | chr3_4:41047847-41047866 | Msa0500540:CDS | 45.0% |
| GCAAAGAACGTGGGTCTTTA+TGG | + | chr3_4:41047884-41047903 | Msa0500540:CDS | 45.0% | |
| ATCGGTAGTGATTAGTGAGC+CGG | + | chr3_4:41047976-41047995 | Msa0500540:intron | 45.0% | |
| GTTGCGCATAAGGAAAAACG+AGG | - | chr3_4:41048151-41048170 | None:intergenic | 45.0% | |
| !! | GGGAGTATTTGTTGCGCATA+AGG | - | chr3_4:41048161-41048180 | None:intergenic | 45.0% |
| !! | ATCAGCTGACTTGCTAACCT+GGG | - | chr3_4:41048182-41048201 | None:intergenic | 45.0% |
| ATGGGAGGACTTGAGTACAT+GGG | - | chr3_4:41048247-41048266 | None:intergenic | 45.0% | |
| AATGGGAGGACTTGAGTACA+TGG | - | chr3_4:41048248-41048267 | None:intergenic | 45.0% | |
| TACTCAAGTCCTCCCATTCA+CGG | + | chr3_4:41048250-41048269 | Msa0500540:CDS | 45.0% | |
| AGAATGGATGCACCGTGAAT+GGG | - | chr3_4:41048265-41048284 | None:intergenic | 45.0% | |
| AGAGGATCAGAACAGGTAAG+AGG | - | chr3_4:41048416-41048435 | None:intergenic | 45.0% | |
| ! | CTCTGAAAGAGGATCAGAAC+AGG | - | chr3_4:41048423-41048442 | None:intergenic | 45.0% |
| !! | TGAATGGACTACTGAGTTGG+GGG | + | chr3_4:41048453-41048472 | Msa0500540:CDS | 45.0% |
| ATGCTTTACGAGCTAAAGGC+TGG | + | chr3_4:41048518-41048537 | Msa0500540:intron | 45.0% | |
| ! | TTCGGCTTTTCCTTTCTGGA+TGG | + | chr3_4:41048569-41048588 | Msa0500540:intron | 45.0% |
| !! | TCTCCCTCTAGAGTCTTTCT+AGG | + | chr3_4:41048665-41048684 | Msa0500540:intron | 45.0% |
| ! | TGGGGCATCTGTTCCATTAA+AGG | - | chr3_4:41048723-41048742 | None:intergenic | 45.0% |
| TTTAATGGAACAGATGCCCC+AGG | + | chr3_4:41048722-41048741 | Msa0500540:intron | 45.0% | |
| TTCTGAGCAAGTTTCCCTCA+TGG | + | chr3_4:41048799-41048818 | Msa0500540:CDS | 45.0% | |
| CGTGTAACTCTGCCAAAAGT+AGG | - | chr3_4:41049150-41049169 | None:intergenic | 45.0% | |
| GTTACACGGTGTAGATGGAT+TGG | + | chr3_4:41049162-41049181 | Msa0500540:intron | 45.0% | |
| !! | GTGTAGATGGATTGGGATGA+AGG | + | chr3_4:41049170-41049189 | Msa0500540:intron | 45.0% |
| !! | AGATGGATTGGGATGAAGGT+AGG | + | chr3_4:41049174-41049193 | Msa0500540:intron | 45.0% |
| !! | GATGGATTGGGATGAAGGTA+GGG | + | chr3_4:41049175-41049194 | Msa0500540:intron | 45.0% |
| AGGTAGGGAAGGATCTAGTA+TGG | + | chr3_4:41049190-41049209 | Msa0500540:intron | 45.0% | |
| GTGAAATAAGCAGTGCATGG+TGG | - | chr3_4:41049271-41049290 | None:intergenic | 45.0% | |
| CTGTTGCATACACCTTACGT+TGG | + | chr3_4:41049522-41049541 | Msa0500540:intron | 45.0% | |
| GTCAATCTCTGCCTACATCA+TGG | + | chr3_4:41049642-41049661 | Msa0500540:intron | 45.0% | |
| TGCACTGTTTATTGTCCAGG+AGG | + | chr3_4:41049730-41049749 | Msa0500540:intron | 45.0% | |
| !!! | AATACTATTAATTTTAAAAT+AGG | + | chr3_4:41046130-41046149 | Msa0500540:intron | 5.0% |
| !! | GGTACCGGTGCATTAAGAGT+TGG | + | chr3_4:41047010-41047029 | Msa0500540:CDS | 50.0% |
| TACTATGCTCCAGCAACACG+AGG | + | chr3_4:41047253-41047272 | Msa0500540:CDS | 50.0% | |
| ACTATGCTCCAGCAACACGA+GGG | + | chr3_4:41047254-41047273 | Msa0500540:CDS | 50.0% | |
| AAATCAAGCCCTCGTGTTGC+TGG | - | chr3_4:41047265-41047284 | None:intergenic | 50.0% | |
| ! | ACACGAGGGCTTGATTTTCC+TGG | + | chr3_4:41047268-41047287 | Msa0500540:CDS | 50.0% |
| GCATGTGGACATAACCCAAC+TGG | + | chr3_4:41047464-41047483 | Msa0500540:CDS | 50.0% | |
| GGTTTGGATCAACCCCAGTT+GGG | - | chr3_4:41047481-41047500 | None:intergenic | 50.0% | |
| TTGTTCAACAGGGTCTTGCC+AGG | + | chr3_4:41047789-41047808 | Msa0500540:intron | 50.0% | |
| TGTTCAACAGGGTCTTGCCA+GGG | + | chr3_4:41047790-41047809 | Msa0500540:intron | 50.0% | |
| TCGGTAGTGATTAGTGAGCC+GGG | + | chr3_4:41047977-41047996 | Msa0500540:intron | 50.0% | |
| ATGCGCAACAAATACTCCCC+AGG | + | chr3_4:41048162-41048181 | Msa0500540:intron | 50.0% | |
| !! | TCAGCTGACTTGCTAACCTG+GGG | - | chr3_4:41048181-41048200 | None:intergenic | 50.0% |
| !! | CATCAGCTGACTTGCTAACC+TGG | - | chr3_4:41048183-41048202 | None:intergenic | 50.0% |
| AGTCAGCTGATGTTGCAAGC+AGG | + | chr3_4:41048191-41048210 | Msa0500540:CDS | 50.0% | |
| GTCAGCTGATGTTGCAAGCA+GGG | + | chr3_4:41048192-41048211 | Msa0500540:CDS | 50.0% | |
| CAGAATGGATGCACCGTGAA+TGG | - | chr3_4:41048266-41048285 | None:intergenic | 50.0% | |
| CATTCACGGTGCATCCATTC+TGG | + | chr3_4:41048264-41048283 | Msa0500540:CDS | 50.0% | |
| CTTGAGAATGGCAGCCAGAA+TGG | - | chr3_4:41048281-41048300 | None:intergenic | 50.0% | |
| ! | CATTCTGGCTGCCATTCTCA+AGG | + | chr3_4:41048279-41048298 | Msa0500540:CDS | 50.0% |
| TGGCTGCCATTCTCAAGGAT+GGG | + | chr3_4:41048284-41048303 | Msa0500540:CDS | 50.0% | |
| GTTCCTGACAAGTGCGAACT+AGG | + | chr3_4:41048930-41048949 | Msa0500540:intron | 50.0% | |
| GTACCTAGTTCGCACTTGTC+AGG | - | chr3_4:41048936-41048955 | None:intergenic | 50.0% | |
| AAGGTTGTGCACCGTAGACA+TGG | - | chr3_4:41049068-41049087 | None:intergenic | 50.0% | |
| TCTACGGTGCACAACCTTGA+TGG | + | chr3_4:41049070-41049089 | Msa0500540:intron | 50.0% | |
| CTACGGTGCACAACCTTGAT+GGG | + | chr3_4:41049071-41049090 | Msa0500540:intron | 50.0% | |
| ACACAGTGCAAGACCCATCA+AGG | - | chr3_4:41049087-41049106 | None:intergenic | 50.0% | |
| GATGGGTCTTGCACTGTGTA+TGG | + | chr3_4:41049088-41049107 | Msa0500540:intron | 50.0% | |
| CACTGTGTATGGCGTACCAT+TGG | + | chr3_4:41049099-41049118 | Msa0500540:intron | 50.0% | |
| GCAGAGTTACACGGTGTAGA+TGG | + | chr3_4:41049157-41049176 | Msa0500540:intron | 50.0% | |
| GATTGGGATGAAGGTAGGGA+AGG | + | chr3_4:41049179-41049198 | Msa0500540:intron | 50.0% | |
| CTGCATGTATTGCATCCACC+AGG | - | chr3_4:41049794-41049813 | None:intergenic | 50.0% | |
| AGACAAGGGGTTTGCCTTCC+TGG | - | chr3_4:41046619-41046638 | None:intergenic | 55.0% | |
| GGAAGGCAAACCCCTTGTCT+TGG | + | chr3_4:41046619-41046638 | Msa0500540:intron | 55.0% | |
| GCGAGCTGAACGCCAACTAT+TGG | + | chr3_4:41046652-41046671 | Msa0500540:CDS | 55.0% | |
| GATCTTCAGTCTGCCCCATC+TGG | + | chr3_4:41047422-41047441 | Msa0500540:CDS | 55.0% | |
| GGGTTTGGATCAACCCCAGT+TGG | - | chr3_4:41047482-41047501 | None:intergenic | 55.0% | |
| TTGCAAGCAGGGTTGAGAGC+TGG | + | chr3_4:41048203-41048222 | Msa0500540:CDS | 55.0% | |
| ATGGATGCACCGTGAATGGG+AGG | - | chr3_4:41048262-41048281 | None:intergenic | 55.0% | |
| CTGGCTGCCATTCTCAAGGA+TGG | + | chr3_4:41048283-41048302 | Msa0500540:CDS | 55.0% | |
| ! | GACTACTGAGTTGGGGGCAA+TGG | + | chr3_4:41048459-41048478 | Msa0500540:CDS | 55.0% |
| GAACAGATGCCCCAGGTGAT+TGG | + | chr3_4:41048729-41048748 | Msa0500540:intron | 55.0% | |
| ATGGTGCTCGTCAGCCATGA+GGG | - | chr3_4:41048816-41048835 | None:intergenic | 55.0% | |
| TATGGTGCTCGTCAGCCATG+AGG | - | chr3_4:41048817-41048836 | None:intergenic | 55.0% | |
| CTCAGAAACAGTCACACGCC+TGG | + | chr3_4:41049773-41049792 | Msa0500540:CDS | 55.0% | |
| AGAAACAGTCACACGCCTGG+TGG | + | chr3_4:41049776-41049795 | Msa0500540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41045610 | 41049833 | 41045610 | ID=Msa0500540;Name=Msa0500540 |
| chr3_4 | mRNA | 41045610 | 41049833 | 41045610 | ID=Msa0500540-mRNA-1;Parent=Msa0500540;Name=Msa0500540-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.18|0.08|0.75|1|1|12|0|402 |
| chr3_4 | exon | 41045610 | 41045660 | 41045610 | ID=Msa0500540-mRNA-1:exon:8463;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41045940 | 41046011 | 41045940 | ID=Msa0500540-mRNA-1:exon:8464;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41046620 | 41046681 | 41046620 | ID=Msa0500540-mRNA-1:exon:8465;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41046779 | 41046862 | 41046779 | ID=Msa0500540-mRNA-1:exon:8466;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41046964 | 41047063 | 41046964 | ID=Msa0500540-mRNA-1:exon:8467;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41047169 | 41047289 | 41047169 | ID=Msa0500540-mRNA-1:exon:8468;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41047411 | 41047574 | 41047411 | ID=Msa0500540-mRNA-1:exon:8469;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41047800 | 41047931 | 41047800 | ID=Msa0500540-mRNA-1:exon:8470;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41048184 | 41048305 | 41048184 | ID=Msa0500540-mRNA-1:exon:8471;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41048441 | 41048535 | 41048441 | ID=Msa0500540-mRNA-1:exon:8472;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41048735 | 41048855 | 41048735 | ID=Msa0500540-mRNA-1:exon:8473;Parent=Msa0500540-mRNA-1 |
| chr3_4 | exon | 41049749 | 41049833 | 41049749 | ID=Msa0500540-mRNA-1:exon:8474;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41045610 | 41045660 | 41045610 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41045940 | 41046011 | 41045940 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41046620 | 41046681 | 41046620 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41046779 | 41046862 | 41046779 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41046964 | 41047063 | 41046964 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41047169 | 41047289 | 41047169 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41047411 | 41047574 | 41047411 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41047800 | 41047931 | 41047800 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41048184 | 41048305 | 41048184 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41048441 | 41048535 | 41048441 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41048735 | 41048855 | 41048735 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| chr3_4 | CDS | 41049749 | 41049833 | 41049749 | ID=Msa0500540-mRNA-1:cds;Parent=Msa0500540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
