Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500530 | GAU44978.1 | 83.862 | 756 | 108 | 6 | 1 | 746 | 1 | 752 | 0.0 | 1257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500530 | sp|F4JRR1|COG2_ARATH | 61.962 | 744 | 267 | 8 | 13 | 746 | 19 | 756 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500530 | A0A2Z6NKF6 | 83.862 | 756 | 108 | 6 | 1 | 746 | 1 | 752 | 0.0 | 1257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0500520 | Msa0500530 | 0.899804 | 1.379069e-77 | -8.615850e-47 |
| Msa0500530 | Msa0500540 | 0.922923 | 5.221478e-89 | -8.615850e-47 |
| Msa0500530 | Msa0719080 | 0.830827 | 2.358745e-55 | -8.615850e-47 |
| Msa0500530 | Msa0719090 | 0.829959 | 3.843737e-55 | -8.615850e-47 |
| Msa0500530 | Msa0719390 | 0.801164 | 1.024352e-48 | -8.615850e-47 |
| Msa0500530 | Msa0789640 | 0.800930 | 1.143619e-48 | -8.615850e-47 |
| Msa0500530 | Msa1077610 | 0.829755 | 4.309803e-55 | -8.615850e-47 |
| Msa0500530 | Msa1077620 | 0.808607 | 2.849534e-50 | -8.615850e-47 |
| Msa0500530 | Msa1305900 | 0.801558 | 8.507361e-49 | -8.615850e-47 |
| Msa0500530 | Msa1338620 | 0.802993 | 4.310056e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500530 | MtrunA17_Chr4g0057621 | 82.563 | 757 | 118 | 7 | 1 | 746 | 1 | 754 | 0.0 | 1217 |
| Msa0500530 | MtrunA17_Chr3g0136251 | 83.108 | 148 | 20 | 2 | 205 | 347 | 24 | 171 | 1.28e-76 | 245 |
| Msa0500530 | MtrunA17_Chr3g0136241 | 79.739 | 153 | 26 | 3 | 539 | 691 | 1 | 148 | 7.29e-73 | 233 |
| Msa0500530 | MtrunA17_Chr3g0136261 | 70.930 | 86 | 22 | 1 | 1 | 86 | 1 | 83 | 2.52e-33 | 123 |
| Msa0500530 | MtrunA17_Chr3g0136231 | 82.979 | 47 | 8 | 0 | 700 | 746 | 1 | 47 | 8.85e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500530 | AT4G24840.1 | 61.962 | 744 | 267 | 8 | 13 | 746 | 19 | 756 | 0.0 | 919 |
Find 179 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTGCCTCAGGTTTC+AGG | 0.144008 | 3_4:+41040199 | Msa0500530:intron |
| TTGCGTCCTATCGTTCTTTA+TGG | 0.147866 | 3_4:+41042131 | Msa0500530:CDS |
| GATGAATGAGTTGGTGATTT+AGG | 0.160455 | 3_4:-41036360 | None:intergenic |
| TATCTTTGCAGCTTCTTTCT+AGG | 0.197736 | 3_4:+41040408 | Msa0500530:CDS |
| CCAAGCTTGCATTTACTAAT+AGG | 0.218631 | 3_4:-41038634 | None:intergenic |
| TTTACACATCTTTGACTTCT+TGG | 0.222399 | 3_4:+41039198 | Msa0500530:CDS |
| GCCGTGGGTGCTGGATCATC+TGG | 0.230805 | 3_4:+41038818 | Msa0500530:CDS |
| CGTAATACTCCTGCAATATA+TGG | 0.230870 | 3_4:-41041370 | None:intergenic |
| GAATTTACAGATACATAAAT+TGG | 0.250942 | 3_4:+41040502 | Msa0500530:intron |
| GCAGTTGTTCCTTGATATTC+AGG | 0.261410 | 3_4:+41041938 | Msa0500530:CDS |
| TGCGAGCAGTTTACACTTTA+CGG | 0.273997 | 3_4:+41036068 | None:intergenic |
| TTCTCCATATTCTCAATAAA+AGG | 0.281870 | 3_4:-41038593 | None:intergenic |
| AAATGATTATCAATTAATTA+AGG | 0.283591 | 3_4:+41038853 | Msa0500530:CDS |
| CAGCATCAGACACATTATTA+TGG | 0.294039 | 3_4:-41041902 | None:intergenic |
| CATTTGTGTGACAATTGTTC+TGG | 0.311418 | 3_4:-41036152 | None:intergenic |
| GAATTCGGAGATGTAGGATT+TGG | 0.314337 | 3_4:-41036281 | None:intergenic |
| AATAGAATTTATTTATCGTT+TGG | 0.318262 | 3_4:-41036113 | None:intergenic |
| ATGAATGAGTTGGTGATTTA+GGG | 0.327285 | 3_4:-41036359 | None:intergenic |
| TTCGTTTCATGCTGTTTCTA+AGG | 0.344377 | 3_4:+41036600 | Msa0500530:CDS |
| CCCCTAGCGCATAAAGTTTA+CGG | 0.346529 | 3_4:-41042093 | None:intergenic |
| TAGTCACTGACATGTTTAAC+TGG | 0.354590 | 3_4:-41042339 | None:intergenic |
| ATATATGGGCAATGCCTAAC+AGG | 0.382587 | 3_4:-41041355 | None:intergenic |
| ATTTATTTATCGTTTGGAAC+TGG | 0.383579 | 3_4:-41036107 | None:intergenic |
| GGGGACGAAGGTTCGGAATT+CGG | 0.386013 | 3_4:-41036296 | None:intergenic |
| TTCATGACGCAATGGAATAT+TGG | 0.389618 | 3_4:+41039598 | Msa0500530:CDS |
| CCAGGATCTAAATTATGAAC+AGG | 0.394085 | 3_4:-41040269 | None:intergenic |
| TGTATAATACACAAATTAGT+TGG | 0.395971 | 3_4:+41042293 | Msa0500530:three_prime_UTR |
| TAAAGGTTCTAAAGATTTCA+AGG | 0.396291 | 3_4:-41041072 | None:intergenic |
| AGACTGGTTGCTTTCTTGCT+TGG | 0.398042 | 3_4:+41042231 | Msa0500530:three_prime_UTR |
| GAGTTCTTGTCTTATCTAGA+AGG | 0.398396 | 3_4:+41039328 | Msa0500530:CDS |
| AAATTTAGCAACAGCAGATC+TGG | 0.402378 | 3_4:-41039551 | None:intergenic |
| GTGACAATTGTTCTGGAGAT+TGG | 0.404170 | 3_4:-41036145 | None:intergenic |
| TCTCTTCTTGCTATCAAGAA+TGG | 0.406611 | 3_4:+41036520 | Msa0500530:CDS |
| TGTCGAAGGGGACGAAGGTT+CGG | 0.407767 | 3_4:-41036303 | None:intergenic |
| TTACTTACAACATGTGGTTC+AGG | 0.412051 | 3_4:+41040983 | Msa0500530:CDS |
| GGGTCATCAGCCGTGGGTGC+TGG | 0.414750 | 3_4:+41038809 | Msa0500530:CDS |
| ACAATTGCTTTGATGACTAA+AGG | 0.415130 | 3_4:-41041089 | None:intergenic |
| CTAATAAGCCTCTACCTGTT+AGG | 0.417673 | 3_4:+41041341 | Msa0500530:CDS |
| AGCTGCCGGCCTTGTTACTA+AGG | 0.417951 | 3_4:+41041708 | Msa0500530:CDS |
| GGTTCTCTTTGCTATTCAAA+AGG | 0.418379 | 3_4:+41039240 | Msa0500530:CDS |
| TAGCAAAGAGAACCTCTCTA+AGG | 0.419095 | 3_4:-41039231 | None:intergenic |
| CCCTAGCGCATAAAGTTTAC+GGG | 0.419221 | 3_4:-41042092 | None:intergenic |
| CAATGGAATATTGGAGTTAG+AGG | 0.422000 | 3_4:+41039607 | Msa0500530:CDS |
| ATTGCATTCTGCATATCTGC+TGG | 0.423017 | 3_4:-41042166 | None:intergenic |
| TGAACTCAATATAGATTGCT+TGG | 0.423684 | 3_4:-41039579 | None:intergenic |
| CTTACTGACTCAAGGACATT+GGG | 0.425710 | 3_4:-41041023 | None:intergenic |
| TTATTGGATATTTCTTCAGC+TGG | 0.426378 | 3_4:+41038902 | Msa0500530:CDS |
| AGGCATTGCCCATATATTGC+AGG | 0.431539 | 3_4:+41041361 | Msa0500530:CDS |
| TAGAAAGAAGCTGCAAAGAT+AGG | 0.431950 | 3_4:-41040406 | None:intergenic |
| GTGCTGGATCATCTGGGGAT+GGG | 0.432741 | 3_4:+41038825 | Msa0500530:CDS |
| CCCGTAAACTTTATGCGCTA+GGG | 0.432753 | 3_4:+41042092 | Msa0500530:CDS |
| ATTATAAGAGTTTGCCTATG+TGG | 0.436429 | 3_4:+41042192 | Msa0500530:exon |
| TGCATCTCTTGTGTTATCAA+TGG | 0.439838 | 3_4:-41038729 | None:intergenic |
| TGCCTAGTGTTCGCTCCGGC+TGG | 0.440054 | 3_4:+41037318 | Msa0500530:CDS |
| CGTAATACAAGCACCGGCAC+TGG | 0.440973 | 3_4:+41040555 | Msa0500530:CDS |
| AAATTGGCTGTCATCTCAAT+TGG | 0.442058 | 3_4:+41040518 | Msa0500530:CDS |
| GCAGGTGGAGAAACTAATAA+AGG | 0.442254 | 3_4:+41037292 | Msa0500530:intron |
| GAGACGAGCAGGGGCAAGTT+CGG | 0.442457 | 3_4:+41041872 | Msa0500530:CDS |
| CAATGGAGATGTGAATTTGC+CGG | 0.445058 | 3_4:+41037343 | Msa0500530:CDS |
| GGTGCTGGATCATCTGGGGA+TGG | 0.445252 | 3_4:+41038824 | Msa0500530:CDS |
| GTTCTCTTTGCTATTCAAAA+GGG | 0.445474 | 3_4:+41039241 | Msa0500530:CDS |
| CCGATGACTCACACCCTCTC+TGG | 0.451108 | 3_4:+41036221 | Msa0500530:CDS |
| CCTGTTCATAATTTAGATCC+TGG | 0.452741 | 3_4:+41040269 | Msa0500530:CDS |
| GGTTCGGAATTCGGAGATGT+AGG | 0.463937 | 3_4:-41036287 | None:intergenic |
| CCGTGGGTGCTGGATCATCT+GGG | 0.464554 | 3_4:+41038819 | Msa0500530:CDS |
| CAGAACAATTGTCACACAAA+TGG | 0.465194 | 3_4:+41036153 | Msa0500530:exon |
| TGCTTCCGCTAGAGAGACTT+TGG | 0.471083 | 3_4:+41036564 | Msa0500530:CDS |
| CCTATTAGTAAATGCAAGCT+TGG | 0.472251 | 3_4:+41038634 | Msa0500530:CDS |
| GTAATACTCCTGCAATATAT+GGG | 0.474158 | 3_4:-41041369 | None:intergenic |
| AGAGACTCAAAGCATGCTGC+TGG | 0.477659 | 3_4:+41037427 | Msa0500530:CDS |
| TCTTGATAATTTGCTTCGCC+AGG | 0.482279 | 3_4:-41040287 | None:intergenic |
| CAAGAAAGCAACCAGTCTAC+AGG | 0.482280 | 3_4:-41042226 | None:intergenic |
| CAAAGCAATTGTGGAGCCAC+TGG | 0.484725 | 3_4:+41041100 | Msa0500530:CDS |
| AACCTCTCTAAGGATCGAAT+TGG | 0.489308 | 3_4:-41039221 | None:intergenic |
| CCAGAGAGGGTGTGAGTCAT+CGG | 0.490461 | 3_4:-41036221 | None:intergenic |
| CGGCAAATTCACATCTCCAT+TGG | 0.492412 | 3_4:-41037342 | None:intergenic |
| ACGAATGCGTGCCCCGCTTG+TGG | 0.497423 | 3_4:+41036453 | Msa0500530:CDS |
| GAACTCAATATAGATTGCTT+GGG | 0.498722 | 3_4:-41039578 | None:intergenic |
| ATCCACATCAACAAGGTTAG+TGG | 0.499317 | 3_4:-41036419 | None:intergenic |
| ATCGATGTCTCATACCTCTA+GGG | 0.499604 | 3_4:-41041395 | None:intergenic |
| TTGTGGATGGTCTAGAACAC+CGG | 0.500040 | 3_4:+41038666 | Msa0500530:intron |
| AGTCAATGTGGCCTGTAGAC+TGG | 0.501000 | 3_4:+41042215 | Msa0500530:three_prime_UTR |
| TCTCTCTCAGCTCCACAAGC+GGG | 0.504245 | 3_4:-41036465 | None:intergenic |
| GTTCGCTCCGGCTGGTCCAA+TGG | 0.504367 | 3_4:+41037326 | Msa0500530:CDS |
| TTGGCACATTGCTTTGTGGA+TGG | 0.504995 | 3_4:+41038653 | Msa0500530:CDS |
| CCCAGATGATCCAGCACCCA+CGG | 0.505584 | 3_4:-41038819 | None:intergenic |
| CAGAGTGCACAGAGACGAGC+AGG | 0.510853 | 3_4:+41041861 | Msa0500530:CDS |
| CCAATGTCCTTGAGTCAGTA+AGG | 0.511438 | 3_4:+41041024 | Msa0500530:CDS |
| TTTGTTATGAGTAGTCAAGA+AGG | 0.511669 | 3_4:+41041811 | Msa0500530:intron |
| GGAACAAAGTCTAACTCTGT+TGG | 0.516834 | 3_4:+41040319 | Msa0500530:CDS |
| GCCCGTAAACTTTATGCGCT+AGG | 0.516938 | 3_4:+41042091 | Msa0500530:CDS |
| CACATCTCCATTGGACCAGC+CGG | 0.517406 | 3_4:-41037333 | None:intergenic |
| CCCACATGGGTCATCAGCCG+TGG | 0.517906 | 3_4:+41038802 | Msa0500530:CDS |
| TCTCATCAATCGCGATCACT+CGG | 0.520027 | 3_4:+41036381 | Msa0500530:CDS |
| GCACCGGCACTGGGTGCGAA+TGG | 0.521161 | 3_4:+41040565 | Msa0500530:CDS |
| TGTTTAGAGAAGCATGTTCG+TGG | 0.522250 | 3_4:+41040957 | Msa0500530:CDS |
| GTTGGTGATTTAGGGATGAA+AGG | 0.523643 | 3_4:-41036351 | None:intergenic |
| CCTTACTGACTCAAGGACAT+TGG | 0.524970 | 3_4:-41041024 | None:intergenic |
| CTCAGGTTTCAGGAAATAGC+AGG | 0.525932 | 3_4:+41040209 | Msa0500530:intron |
| AGTCCATTCGCACCCAGTGC+CGG | 0.531168 | 3_4:-41040568 | None:intergenic |
| AAGCTTGGCACATTGCTTTG+TGG | 0.534819 | 3_4:+41038649 | Msa0500530:CDS |
| GTCTGAGGAGAGGAAGGATG+CGG | 0.537778 | 3_4:-41036251 | None:intergenic |
| TTGTGAACGGAGAGTGTCGA+AGG | 0.541499 | 3_4:-41036317 | None:intergenic |
| TCTGAGGAGAGGAAGGATGC+GGG | 0.543403 | 3_4:-41036250 | None:intergenic |
| TGTCATCTCAATTGGCTGCA+AGG | 0.544120 | 3_4:+41040526 | Msa0500530:CDS |
| GATATGTGATACGCTGGGAT+CGG | 0.550371 | 3_4:-41036181 | None:intergenic |
| TTTAGTCATCAAAGCAATTG+TGG | 0.551810 | 3_4:+41041091 | Msa0500530:CDS |
| TGGAGAGTTTGAGATTGTGT+TGG | 0.551856 | 3_4:+41040339 | Msa0500530:CDS |
| GGTGTGAGTCATCGGAGAAG+AGG | 0.552270 | 3_4:-41036213 | None:intergenic |
| GGGCAATGCCTAACAGGTAG+AGG | 0.552635 | 3_4:-41041349 | None:intergenic |
| GTTCTATGTTACACATGCAA+AGG | 0.555426 | 3_4:+41037481 | Msa0500530:CDS |
| ATCGAAGTCTGAGGAGAGGA+AGG | 0.564376 | 3_4:-41036257 | None:intergenic |
| TGTACATTGCAATTGCATCC+CGG | 0.565090 | 3_4:-41038685 | None:intergenic |
| GACCAGCCGGAGCGAACACT+AGG | 0.565928 | 3_4:-41037320 | None:intergenic |
| CTTCCAAGAGAAAATGCACC+TGG | 0.568919 | 3_4:-41039268 | None:intergenic |
| TTATTGAGAATATGGAGAAG+AGG | 0.569360 | 3_4:+41038597 | Msa0500530:CDS |
| AGCAATTGTGGAGCCACTGG+TGG | 0.570163 | 3_4:+41041103 | Msa0500530:CDS |
| GGAACTTGTCAGAACAAGAA+AGG | 0.570389 | 3_4:-41040379 | None:intergenic |
| CCATATTCTCAATAAAAGGA+AGG | 0.572138 | 3_4:-41038589 | None:intergenic |
| CGTTATTATGAGTTAGCTGC+CGG | 0.574072 | 3_4:+41041694 | Msa0500530:CDS |
| TGCTCTGCCTTACTGACTCA+AGG | 0.577413 | 3_4:-41041031 | None:intergenic |
| TACCACTAACCTTGTTGATG+TGG | 0.578033 | 3_4:+41036417 | Msa0500530:CDS |
| TCATGCCTACCTGAATATCA+AGG | 0.583005 | 3_4:-41041947 | None:intergenic |
| AAGAGTCGTAATACAAGCAC+CGG | 0.583216 | 3_4:+41040549 | Msa0500530:CDS |
| GAGTGCACAGAGACGAGCAG+GGG | 0.592866 | 3_4:+41041863 | Msa0500530:CDS |
| GTAATACAAGCACCGGCACT+GGG | 0.593244 | 3_4:+41040556 | Msa0500530:CDS |
| TTCTCTCTCAGCTCCACAAG+CGG | 0.593386 | 3_4:-41036466 | None:intergenic |
| GGCCAATTCGATCCTTAGAG+AGG | 0.593519 | 3_4:+41039219 | Msa0500530:CDS |
| TGGTGATTACTTACAACATG+TGG | 0.593918 | 3_4:+41040977 | Msa0500530:CDS |
| GCTATTCAAAAGGGAAAACC+AGG | 0.596530 | 3_4:+41039250 | Msa0500530:CDS |
| GTGGCGGATATGTGATACGC+TGG | 0.598572 | 3_4:-41036187 | None:intergenic |
| TCTTACCTTAGTAACAAGGC+CGG | 0.599038 | 3_4:-41041713 | None:intergenic |
| AATGGAATATTGGAGTTAGA+GGG | 0.601011 | 3_4:+41039608 | Msa0500530:CDS |
| AACAATTGTCACACAAATGG+AGG | 0.602050 | 3_4:+41036156 | Msa0500530:exon |
| AGAGTGCACAGAGACGAGCA+GGG | 0.603108 | 3_4:+41041862 | Msa0500530:CDS |
| CCACATGGGTCATCAGCCGT+GGG | 0.607324 | 3_4:+41038803 | Msa0500530:CDS |
| GGATTCTTACCTTAGTAACA+AGG | 0.607831 | 3_4:-41041717 | None:intergenic |
| GAAGCTGCAAAGATAGGCGA+AGG | 0.608946 | 3_4:-41040400 | None:intergenic |
| GGTAGTTGTTGAGTTGTGAA+CGG | 0.611307 | 3_4:-41036330 | None:intergenic |
| GAGTTGCCTAGTGTTCGCTC+CGG | 0.612321 | 3_4:+41037314 | Msa0500530:CDS |
| TGTGGATGGTCTAGAACACC+GGG | 0.614094 | 3_4:+41038667 | Msa0500530:intron |
| CAGGACTTTCGACAGATGAG+TGG | 0.616414 | 3_4:+41041295 | Msa0500530:intron |
| ACACTGCCATAAAGAACGAT+AGG | 0.618444 | 3_4:-41042137 | None:intergenic |
| TGTGAACGGAGAGTGTCGAA+GGG | 0.619670 | 3_4:-41036316 | None:intergenic |
| AGCTAACTCATAATAACGGT+CGG | 0.625002 | 3_4:-41041689 | None:intergenic |
| TCGTTCTTTATGGCAGTGTG+TGG | 0.626560 | 3_4:+41042141 | Msa0500530:CDS |
| CTCTCTCAGCTCCACAAGCG+GGG | 0.626983 | 3_4:-41036464 | None:intergenic |
| CTTTCGACAGATGAGTGGAA+TGG | 0.629499 | 3_4:+41041300 | Msa0500530:CDS |
| ATGCGGGTTTGAACCAGAGA+GGG | 0.633812 | 3_4:-41036234 | None:intergenic |
| CCGTAAACTTTATGCGCTAG+GGG | 0.634064 | 3_4:+41042093 | Msa0500530:CDS |
| CGGCAGCTAACTCATAATAA+CGG | 0.635486 | 3_4:-41041693 | None:intergenic |
| CGTGGGTGCTGGATCATCTG+GGG | 0.636088 | 3_4:+41038820 | Msa0500530:CDS |
| ATATTGAGTTCATGACGCAA+TGG | 0.639233 | 3_4:+41039590 | Msa0500530:CDS |
| GAGAGTGTCGAAGGGGACGA+AGG | 0.642248 | 3_4:-41036308 | None:intergenic |
| GGATTTGGAATCGAAGTCTG+AGG | 0.643567 | 3_4:-41036266 | None:intergenic |
| TTACTGACTCAAGGACATTG+GGG | 0.648049 | 3_4:-41041022 | None:intergenic |
| CCACGGCTGATGACCCATGT+GGG | 0.648542 | 3_4:-41038802 | None:intergenic |
| TAATCTCAGTTGCAGCACAA+AGG | 0.648567 | 3_4:-41041666 | None:intergenic |
| TGGAATCGAAGTCTGAGGAG+AGG | 0.651711 | 3_4:-41036261 | None:intergenic |
| TCGATGTCTCATACCTCTAG+GGG | 0.652134 | 3_4:-41041394 | None:intergenic |
| CAGGATCTAAATTATGAACA+GGG | 0.654377 | 3_4:-41040268 | None:intergenic |
| CTGCGTCATCCACATCAACA+AGG | 0.658262 | 3_4:-41036426 | None:intergenic |
| AGGCCACATTGACTCCACAT+AGG | 0.658838 | 3_4:-41042206 | None:intergenic |
| ATCGGAGAAGAGGTGAGTGG+CGG | 0.662981 | 3_4:-41036203 | None:intergenic |
| TGGCGGATATGTGATACGCT+GGG | 0.665920 | 3_4:-41036186 | None:intergenic |
| TTGCCTATGTGGAGTCAATG+TGG | 0.668659 | 3_4:+41042203 | Msa0500530:three_prime_UTR |
| TACAAAAGATTATCCCACAT+GGG | 0.671706 | 3_4:+41038789 | Msa0500530:CDS |
| GATTGATGAGATGAATGAGT+TGG | 0.672768 | 3_4:-41036369 | None:intergenic |
| GTGTAACATAGAACTTAAGT+CGG | 0.675394 | 3_4:-41037472 | None:intergenic |
| AAGCTCCAAAGTCTCTCTAG+CGG | 0.680122 | 3_4:-41036569 | None:intergenic |
| TTAGCAACAGCAGATCTGGA+CGG | 0.689389 | 3_4:-41039547 | None:intergenic |
| TACTGACTCAAGGACATTGG+GGG | 0.691790 | 3_4:-41041021 | None:intergenic |
| ATACAAAAGATTATCCCACA+TGG | 0.693182 | 3_4:+41038788 | Msa0500530:CDS |
| AGGAGTATTACGTCCCCTAG+AGG | 0.693344 | 3_4:+41041381 | Msa0500530:CDS |
| AAATTATCAAGACTTAACAC+TGG | 0.695726 | 3_4:+41040298 | Msa0500530:CDS |
| CCCACGGCTGATGACCCATG+TGG | 0.698666 | 3_4:-41038803 | None:intergenic |
| GTGAACGGAGAGTGTCGAAG+GGG | 0.700097 | 3_4:-41036315 | None:intergenic |
| GATGCGGGTTTGAACCAGAG+AGG | 0.703338 | 3_4:-41036235 | None:intergenic |
| GTCATCGGAGAAGAGGTGAG+TGG | 0.715821 | 3_4:-41036206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATAATATGAAAAG+GGG | + | chr3_4:41038304-41038323 | Msa0500530:intron | 10.0% |
| !!! | TTATTAAAAATTTCTAAAAG+AGG | + | chr3_4:41038343-41038362 | Msa0500530:intron | 10.0% |
| !! | AAATGATTATCAATTAATTA+AGG | + | chr3_4:41038853-41038872 | Msa0500530:CDS | 10.0% |
| !!! | AAATGATGTATTTTATAATT+GGG | + | chr3_4:41039962-41039981 | Msa0500530:intron | 10.0% |
| !! | AATAGAATTTATTTATCGTT+TGG | - | chr3_4:41036116-41036135 | None:intergenic | 15.0% |
| !!! | ATTGAAAAAAAAAGTGATTT+TGG | + | chr3_4:41036747-41036766 | Msa0500530:intron | 15.0% |
| !!! | AATTGATTTTATTGATTGTA+GGG | - | chr3_4:41036968-41036987 | None:intergenic | 15.0% |
| !!! | AAATTGATTTTATTGATTGT+AGG | - | chr3_4:41036969-41036988 | None:intergenic | 15.0% |
| !!! | TTATTGTTTAGTTTTAGTTA+CGG | + | chr3_4:41037065-41037084 | Msa0500530:intron | 15.0% |
| !! | GTAAAAAAAAAAAATTAGCA+TGG | + | chr3_4:41037117-41037136 | Msa0500530:intron | 15.0% |
| !! | TTTAATTATTATACATAACC+AGG | + | chr3_4:41037874-41037893 | Msa0500530:intron | 15.0% |
| !! | ATTCAATTGTTTACTAAAAA+TGG | - | chr3_4:41038285-41038304 | None:intergenic | 15.0% |
| !!! | TAAAGACTGTAAATTTTTAT+TGG | + | chr3_4:41038886-41038905 | Msa0500530:CDS | 15.0% |
| !!! | GAAATGATGTATTTTATAAT+TGG | + | chr3_4:41039961-41039980 | Msa0500530:intron | 15.0% |
| !!! | ATTTTATAATTGGGTTAAAT+AGG | + | chr3_4:41039971-41039990 | Msa0500530:intron | 15.0% |
| !!! | TTTTCATTCTCATAAAAAAA+TGG | + | chr3_4:41040022-41040041 | Msa0500530:intron | 15.0% |
| !!! | AATACACATTTTTTTATCTT+TGG | + | chr3_4:41040088-41040107 | Msa0500530:intron | 15.0% |
| !! | TTAATGTTTATTCAGTAAAT+TGG | + | chr3_4:41041155-41041174 | Msa0500530:intron | 15.0% |
| !! | AAAAATTCATTTCAAAATCA+AGG | - | chr3_4:41041998-41042017 | None:intergenic | 15.0% |
| !! | AATGTTAAGTGATTTATGTT+TGG | + | chr3_4:41036785-41036804 | Msa0500530:intron | 20.0% |
| !!! | TCTATGAATAATTTTTAGCT+TGG | - | chr3_4:41036846-41036865 | None:intergenic | 20.0% |
| !!! | ACAAAATTTTAACTTCAAGT+TGG | + | chr3_4:41036875-41036894 | Msa0500530:intron | 20.0% |
| !!! | ATTGATTTTATTGATTGTAG+GGG | - | chr3_4:41036967-41036986 | None:intergenic | 20.0% |
| !!! | TCAATAAAATCAATTTTCCA+CGG | + | chr3_4:41036973-41036992 | Msa0500530:intron | 20.0% |
| !! | GTTTGAGTAGAAAAATTATT+AGG | + | chr3_4:41037039-41037058 | Msa0500530:intron | 20.0% |
| !! | AAAAAAAAATAGAAGCAACT+TGG | + | chr3_4:41037722-41037741 | Msa0500530:intron | 20.0% |
| !! | GCATTGAAAAAAAAAATAGA+AGG | + | chr3_4:41037796-41037815 | Msa0500530:intron | 20.0% |
| !! | AAAAAAAAATAGAAGGAACT+TGG | + | chr3_4:41037803-41037822 | Msa0500530:intron | 20.0% |
| !!! | TTGATTCGATAAATAATCAA+AGG | - | chr3_4:41038063-41038082 | None:intergenic | 20.0% |
| !! | TTGTTTACTAAAAATGGTAA+AGG | - | chr3_4:41038279-41038298 | None:intergenic | 20.0% |
| !!! | AAAAATTTCTAAAAGAGGTA+AGG | + | chr3_4:41038348-41038367 | Msa0500530:intron | 20.0% |
| !!! | AAAATTTCTAAAAGAGGTAA+GGG | + | chr3_4:41038349-41038368 | Msa0500530:intron | 20.0% |
| !!! | TAATATGAACCTCTAAAAAA+TGG | - | chr3_4:41038387-41038406 | None:intergenic | 20.0% |
| !! | AAAAATAGAGAAAAAGAGAT+GGG | - | chr3_4:41038558-41038577 | None:intergenic | 20.0% |
| !! | AAAATTTAGATATGTAAACC+TGG | - | chr3_4:41039155-41039174 | None:intergenic | 20.0% |
| !!! | AGGTTTACATATCTAAATTT+TGG | + | chr3_4:41039154-41039173 | Msa0500530:intron | 20.0% |
| !!! | CATATCTAAATTTTGGTATT+TGG | + | chr3_4:41039161-41039180 | Msa0500530:intron | 20.0% |
| !!! | TAATTTTTCAAGAACTTTGT+TGG | - | chr3_4:41039295-41039314 | None:intergenic | 20.0% |
| !! | CAAAAAGAATGAAAAAAATG+TGG | + | chr3_4:41039399-41039418 | Msa0500530:intron | 20.0% |
| !! | TTTGTGAATTATTAGTGATA+TGG | + | chr3_4:41039684-41039703 | Msa0500530:intron | 20.0% |
| !!! | TTTTACGTATTTATGCAAAA+AGG | + | chr3_4:41039873-41039892 | Msa0500530:intron | 20.0% |
| !! | TGAGAATGAAAAACAAAATT+TGG | - | chr3_4:41040014-41040033 | None:intergenic | 20.0% |
| !! | TATCTGTAAATTCAAAAAAG+AGG | - | chr3_4:41040495-41040514 | None:intergenic | 20.0% |
| !! | GAATTTACAGATACATAAAT+TGG | + | chr3_4:41040502-41040521 | Msa0500530:intron | 20.0% |
| !! | AGTAAAAGACATAATATGTA+TGG | - | chr3_4:41040766-41040785 | None:intergenic | 20.0% |
| !! | TTGGTAAAAAATTTATCTCT+TGG | + | chr3_4:41041764-41041783 | Msa0500530:intron | 20.0% |
| !! | TGTATAATACACAAATTAGT+TGG | + | chr3_4:41042293-41042312 | Msa0500530:three_prime_UTR | 20.0% |
| !! | ATTTATTTATCGTTTGGAAC+TGG | - | chr3_4:41036110-41036129 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGATTTTGGCTAT+AGG | + | chr3_4:41036754-41036773 | Msa0500530:intron | 25.0% |
| ! | ACAAAAAGATAGTCATAATC+TGG | + | chr3_4:41037755-41037774 | Msa0500530:intron | 25.0% |
| !!! | CTATTTTTTTTTTCAATGCC+TGG | - | chr3_4:41037795-41037814 | None:intergenic | 25.0% |
| ! | TATTCTAATTTGAGTAGTCA+TGG | - | chr3_4:41037851-41037870 | None:intergenic | 25.0% |
| !! | AGAATGTGAAAGTATAGAAA+TGG | + | chr3_4:41037981-41038000 | Msa0500530:intron | 25.0% |
| !! | AACAAAATGACATTTTGTTG+AGG | + | chr3_4:41038212-41038231 | Msa0500530:intron | 25.0% |
| !! | ACAAAATGACATTTTGTTGA+GGG | + | chr3_4:41038213-41038232 | Msa0500530:intron | 25.0% |
| !! | CTATTATGTACCTCTAAAAA+CGG | + | chr3_4:41038241-41038260 | Msa0500530:intron | 25.0% |
| ! | GAAAAATAGAGAAAAAGAGA+TGG | - | chr3_4:41038559-41038578 | None:intergenic | 25.0% |
| ! | TTCTCCATATTCTCAATAAA+AGG | - | chr3_4:41038596-41038615 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTTACCACTTT+AGG | + | chr3_4:41038934-41038953 | Msa0500530:intron | 25.0% |
| ! | ACTTAAGCATGATATATGTT+GGG | - | chr3_4:41039126-41039145 | None:intergenic | 25.0% |
| ! | TACTTAAGCATGATATATGT+TGG | - | chr3_4:41039127-41039146 | None:intergenic | 25.0% |
| ! | GAAAAATTACAAATCAAGCT+TGG | + | chr3_4:41039306-41039325 | Msa0500530:CDS | 25.0% |
| !!! | TTCATTCTTTTTGTTTCACA+AGG | - | chr3_4:41039392-41039411 | None:intergenic | 25.0% |
| !! | ATGTCATTTAATTTCATGCA+AGG | + | chr3_4:41039517-41039536 | Msa0500530:intron | 25.0% |
| !!! | TTATTAGTGATATGGATTAG+TGG | + | chr3_4:41039692-41039711 | Msa0500530:intron | 25.0% |
| !! | TAGTTAGAGCAAACAATTTT+TGG | + | chr3_4:41039821-41039840 | Msa0500530:intron | 25.0% |
| ! | AAGATATGAGATCCATATTA+GGG | - | chr3_4:41040182-41040201 | None:intergenic | 25.0% |
| ! | AAATTATCAAGACTTAACAC+TGG | + | chr3_4:41040298-41040317 | Msa0500530:CDS | 25.0% |
| ! | TGTAAATTCAAAAAAGAGGT+TGG | - | chr3_4:41040491-41040510 | None:intergenic | 25.0% |
| ! | ACAAAAACAAAGTAAAGACA+TGG | - | chr3_4:41040659-41040678 | None:intergenic | 25.0% |
| ! | TGAAGACTTGAAGTAAATAT+AGG | + | chr3_4:41040713-41040732 | Msa0500530:intron | 25.0% |
| !! | GAGGATTTGGTATAAAAAAA+TGG | + | chr3_4:41040809-41040828 | Msa0500530:intron | 25.0% |
| ! | ATTCAAGTCTGTTATGATTT+AGG | - | chr3_4:41040909-41040928 | None:intergenic | 25.0% |
| !!! | TAAAGGTTCTAAAGATTTCA+AGG | - | chr3_4:41041075-41041094 | None:intergenic | 25.0% |
| ! | TTGGTTTCATTATTCAGATT+TGG | + | chr3_4:41041174-41041193 | Msa0500530:intron | 25.0% |
| ! | TGGTTTCATTATTCAGATTT+GGG | + | chr3_4:41041175-41041194 | Msa0500530:intron | 25.0% |
| ! | TTAGCTGGATTTAAAGAAAA+TGG | + | chr3_4:41041473-41041492 | Msa0500530:intron | 25.0% |
| ! | TAGCTGGATTTAAAGAAAAT+GGG | + | chr3_4:41041474-41041493 | Msa0500530:intron | 25.0% |
| ! | AGTAATTTCATCAATGTAGT+TGG | - | chr3_4:41041741-41041760 | None:intergenic | 25.0% |
| !! | ATGAATGAGTTGGTGATTTA+GGG | - | chr3_4:41036362-41036381 | None:intergenic | 30.0% |
| !! | ACTTCAAGTTGGAATCAATT+AGG | + | chr3_4:41036886-41036905 | Msa0500530:intron | 30.0% |
| ! | GGTTGTTGATTATTTCAGTA+AGG | + | chr3_4:41037138-41037157 | Msa0500530:intron | 30.0% |
| GTGTAACATAGAACTTAAGT+CGG | - | chr3_4:41037475-41037494 | None:intergenic | 30.0% | |
| CAACTAATTAGCATTCTCAA+AGG | + | chr3_4:41037699-41037718 | Msa0500530:intron | 30.0% | |
| AAAAATAGAAGCAACTTGGA+AGG | + | chr3_4:41037726-41037745 | Msa0500530:intron | 30.0% | |
| AAAATAGAAGCAACTTGGAA+GGG | + | chr3_4:41037727-41037746 | Msa0500530:intron | 30.0% | |
| CTGGTAATTTATAGATAACC+AGG | + | chr3_4:41037774-41037793 | Msa0500530:intron | 30.0% | |
| AAAAATAGAAGGAACTTGGA+AGG | + | chr3_4:41037807-41037826 | Msa0500530:intron | 30.0% | |
| AAAATAGAAGGAACTTGGAA+GGG | + | chr3_4:41037808-41037827 | Msa0500530:intron | 30.0% | |
| CATGTTATTATCTCTTTGTC+TGG | + | chr3_4:41038031-41038050 | Msa0500530:intron | 30.0% | |
| TTGATCATAATGAAAAACCC+TGG | - | chr3_4:41038097-41038116 | None:intergenic | 30.0% | |
| !!! | ACATTTGGACCATTTTTTAG+AGG | + | chr3_4:41038375-41038394 | Msa0500530:intron | 30.0% |
| ATAAAAGGAAGGTTCTGTAA+TGG | - | chr3_4:41038581-41038600 | None:intergenic | 30.0% | |
| CCATATTCTCAATAAAAGGA+AGG | - | chr3_4:41038592-41038611 | None:intergenic | 30.0% | |
| ! | CCTTCCTTTTATTGAGAATA+TGG | + | chr3_4:41038589-41038608 | Msa0500530:CDS | 30.0% |
| TTATTGAGAATATGGAGAAG+AGG | + | chr3_4:41038597-41038616 | Msa0500530:CDS | 30.0% | |
| !!! | AATTTTTCGAGTGATTGTTG+TGG | + | chr3_4:41038757-41038776 | Msa0500530:CDS | 30.0% |
| ! | GGGATAATCTTTTGTATCAA+TGG | - | chr3_4:41038785-41038804 | None:intergenic | 30.0% |
| ATACAAAAGATTATCCCACA+TGG | + | chr3_4:41038788-41038807 | Msa0500530:CDS | 30.0% | |
| TACAAAAGATTATCCCACAT+GGG | + | chr3_4:41038789-41038808 | Msa0500530:CDS | 30.0% | |
| TTATTGGATATTTCTTCAGC+TGG | + | chr3_4:41038902-41038921 | Msa0500530:CDS | 30.0% | |
| TGGTAAGAAAAAGTTAGATG+TGG | - | chr3_4:41038930-41038949 | None:intergenic | 30.0% | |
| ATGACAGATTATGGCTTATA+TGG | - | chr3_4:41038962-41038981 | None:intergenic | 30.0% | |
| ! | TTTACACATCTTTGACTTCT+TGG | + | chr3_4:41039198-41039217 | Msa0500530:CDS | 30.0% |
| !! | GTTCTCTTTGCTATTCAAAA+GGG | + | chr3_4:41039241-41039260 | Msa0500530:CDS | 30.0% |
| !! | TTTTGTTTCACAAGGTGTAA+AGG | - | chr3_4:41039384-41039403 | None:intergenic | 30.0% |
| AAAAAAATGTGGCCTTTATG+TGG | + | chr3_4:41039410-41039429 | Msa0500530:intron | 30.0% | |
| GAACTCAATATAGATTGCTT+GGG | - | chr3_4:41039581-41039600 | None:intergenic | 30.0% | |
| TGAACTCAATATAGATTGCT+TGG | - | chr3_4:41039582-41039601 | None:intergenic | 30.0% | |
| AATGGAATATTGGAGTTAGA+GGG | + | chr3_4:41039608-41039627 | Msa0500530:CDS | 30.0% | |
| !!! | TTAGAGGGTATTTTTCTTTG+AGG | + | chr3_4:41039623-41039642 | Msa0500530:intron | 30.0% |
| !! | TTTCTCGTCTTATTTCATAG+TGG | + | chr3_4:41039938-41039957 | Msa0500530:intron | 30.0% |
| !! | TTCTCGTCTTATTTCATAGT+GGG | + | chr3_4:41039939-41039958 | Msa0500530:intron | 30.0% |
| !! | GTGCTTTGAAGAAAAAACTA+GGG | - | chr3_4:41040116-41040135 | None:intergenic | 30.0% |
| GAAGATATGAGATCCATATT+AGG | - | chr3_4:41040183-41040202 | None:intergenic | 30.0% | |
| CAGGATCTAAATTATGAACA+GGG | - | chr3_4:41040271-41040290 | None:intergenic | 30.0% | |
| TGCATACAAAAACAAGGTAA+AGG | - | chr3_4:41040636-41040655 | None:intergenic | 30.0% | |
| ! | TTTTTCTGATGTTCTGTTTG+AGG | + | chr3_4:41040790-41040809 | Msa0500530:intron | 30.0% |
| !! | GCACAATTGTTATTTCATCA+TGG | - | chr3_4:41040837-41040856 | None:intergenic | 30.0% |
| ACAGACTTGAATTCATTTGT+AGG | + | chr3_4:41040917-41040936 | Msa0500530:intron | 30.0% | |
| ! | ACAATTGCTTTGATGACTAA+AGG | - | chr3_4:41041092-41041111 | None:intergenic | 30.0% |
| TTTAGTCATCAAAGCAATTG+TGG | + | chr3_4:41041091-41041110 | Msa0500530:CDS | 30.0% | |
| GGTTTCATTATTCAGATTTG+GGG | + | chr3_4:41041176-41041195 | Msa0500530:intron | 30.0% | |
| ! | AAAATATGAGCAAGTTGGAA+GGG | - | chr3_4:41041257-41041276 | None:intergenic | 30.0% |
| TCGCTTGTAAAAAATAATCC+AGG | + | chr3_4:41041276-41041295 | Msa0500530:intron | 30.0% | |
| GTAATACTCCTGCAATATAT+GGG | - | chr3_4:41041372-41041391 | None:intergenic | 30.0% | |
| ACCACGAAAAGAAATAATCA+GGG | - | chr3_4:41041447-41041466 | None:intergenic | 30.0% | |
| AACCACGAAAAGAAATAATC+AGG | - | chr3_4:41041448-41041467 | None:intergenic | 30.0% | |
| !! | TTATTTCTTTTCGTGGTTAC+TGG | + | chr3_4:41041450-41041469 | Msa0500530:intron | 30.0% |
| CATTGATGAAATTACTACGT+TGG | + | chr3_4:41041745-41041764 | Msa0500530:intron | 30.0% | |
| ! | TTTGTTATGAGTAGTCAAGA+AGG | + | chr3_4:41041811-41041830 | Msa0500530:intron | 30.0% |
| AAAAGAAAGCTCACAATTTG+CGG | - | chr3_4:41042031-41042050 | None:intergenic | 30.0% | |
| ATTATAAGAGTTTGCCTATG+TGG | + | chr3_4:41042192-41042211 | Msa0500530:exon | 30.0% | |
| !!! | GCTTTTACATAACTAGTCTT+TGG | + | chr3_4:41042315-41042334 | Msa0500530:three_prime_UTR | 30.0% |
| CATTTGTGTGACAATTGTTC+TGG | - | chr3_4:41036155-41036174 | None:intergenic | 35.0% | |
| CAGAACAATTGTCACACAAA+TGG | + | chr3_4:41036153-41036172 | Msa0500530:exon | 35.0% | |
| AACAATTGTCACACAAATGG+AGG | + | chr3_4:41036156-41036175 | Msa0500530:exon | 35.0% | |
| !! | GATGAATGAGTTGGTGATTT+AGG | - | chr3_4:41036363-41036382 | None:intergenic | 35.0% |
| GATTGATGAGATGAATGAGT+TGG | - | chr3_4:41036372-41036391 | None:intergenic | 35.0% | |
| ! | TCTCTTCTTGCTATCAAGAA+TGG | + | chr3_4:41036520-41036539 | Msa0500530:CDS | 35.0% |
| !! | TTCGTTTCATGCTGTTTCTA+AGG | + | chr3_4:41036600-41036619 | Msa0500530:CDS | 35.0% |
| ! | CAAGTTGGAATCAATTAGGA+AGG | + | chr3_4:41036890-41036909 | Msa0500530:intron | 35.0% |
| ! | TTTTTACACTAACCGAGCAA+TGG | - | chr3_4:41037104-41037123 | None:intergenic | 35.0% |
| GAAGAAACTCTTTCATCTTC+TGG | + | chr3_4:41037173-41037192 | Msa0500530:intron | 35.0% | |
| ! | TGCTTGTTGACAATCATTTC+TGG | + | chr3_4:41037207-41037226 | Msa0500530:intron | 35.0% |
| ! | GCTTGTTGACAATCATTTCT+GGG | + | chr3_4:41037208-41037227 | Msa0500530:intron | 35.0% |
| CTTGTTGACAATCATTTCTG+GGG | + | chr3_4:41037209-41037228 | Msa0500530:intron | 35.0% | |
| !! | GGGTTGATTTTGAAAACCTT+GGG | + | chr3_4:41037229-41037248 | Msa0500530:intron | 35.0% |
| !! | GGTTGATTTTGAAAACCTTG+GGG | + | chr3_4:41037230-41037249 | Msa0500530:intron | 35.0% |
| !! | TTGCTCAATGACTTTTTCTC+CGG | - | chr3_4:41037365-41037384 | None:intergenic | 35.0% |
| GAGAAAAAGTCATTGAGCAA+TGG | + | chr3_4:41037365-41037384 | Msa0500530:CDS | 35.0% | |
| GTTCTATGTTACACATGCAA+AGG | + | chr3_4:41037481-41037500 | Msa0500530:CDS | 35.0% | |
| CCTACAAAATGGTATACCAT+TGG | - | chr3_4:41037632-41037651 | None:intergenic | 35.0% | |
| ! | CCAATGGTATACCATTTTGT+AGG | + | chr3_4:41037629-41037648 | Msa0500530:intron | 35.0% |
| !!! | GCTATGTGTTGGTGTTTTTT+AGG | + | chr3_4:41037651-41037670 | Msa0500530:intron | 35.0% |
| !! | TATACATAACCAGGCATTGA+AGG | + | chr3_4:41037883-41037902 | Msa0500530:intron | 35.0% |
| GTTATTATCTCTTTGTCTGG+AGG | + | chr3_4:41038034-41038053 | Msa0500530:intron | 35.0% | |
| AATCAAGTTAGAACTGACCA+GGG | + | chr3_4:41038077-41038096 | Msa0500530:intron | 35.0% | |
| ! | AAATGGTAAAGGTCAGCTTT+TGG | - | chr3_4:41038268-41038287 | None:intergenic | 35.0% |
| AGATGCACTCCAAGAATTAA+TGG | + | chr3_4:41038406-41038425 | Msa0500530:intron | 35.0% | |
| GATGCACTCCAAGAATTAAT+GGG | + | chr3_4:41038407-41038426 | Msa0500530:intron | 35.0% | |
| !! | TATCTGCCTTGAAGTTTTGT+TGG | + | chr3_4:41038464-41038483 | Msa0500530:intron | 35.0% |
| TCACAACCAACAAAACTTCA+AGG | - | chr3_4:41038473-41038492 | None:intergenic | 35.0% | |
| CCAAGCTTGCATTTACTAAT+AGG | - | chr3_4:41038637-41038656 | None:intergenic | 35.0% | |
| CCTATTAGTAAATGCAAGCT+TGG | + | chr3_4:41038634-41038653 | Msa0500530:CDS | 35.0% | |
| TGCATCTCTTGTGTTATCAA+TGG | - | chr3_4:41038732-41038751 | None:intergenic | 35.0% | |
| AGATGCAGTATGACAGATTA+TGG | - | chr3_4:41038971-41038990 | None:intergenic | 35.0% | |
| !! | CGAACTTTTAAAGACCAAGA+AGG | - | chr3_4:41039029-41039048 | None:intergenic | 35.0% |
| CATGTGGTAAAAAATGTGAG+AGG | - | chr3_4:41039066-41039085 | None:intergenic | 35.0% | |
| ! | TTTTACCACATGTACTAGCT+AGG | + | chr3_4:41039074-41039093 | Msa0500530:intron | 35.0% |
| AATAACCTAGCTAGTACATG+TGG | - | chr3_4:41039082-41039101 | None:intergenic | 35.0% | |
| GTTATTTGTAGTCATGCTTG+TGG | + | chr3_4:41039096-41039115 | Msa0500530:intron | 35.0% | |
| TCATGCTTAAGTATCAAACC+AGG | + | chr3_4:41039134-41039153 | Msa0500530:intron | 35.0% | |
| AAGTCAAAGATGTGTAAACC+TGG | - | chr3_4:41039196-41039215 | None:intergenic | 35.0% | |
| !! | GGTTCTCTTTGCTATTCAAA+AGG | + | chr3_4:41039240-41039259 | Msa0500530:CDS | 35.0% |
| GAGTTCTTGTCTTATCTAGA+AGG | + | chr3_4:41039328-41039347 | Msa0500530:CDS | 35.0% | |
| ! | GTAAAGGAAGATTAGCTGAA+AGG | - | chr3_4:41039368-41039387 | None:intergenic | 35.0% |
| AAATTTAGCAACAGCAGATC+TGG | - | chr3_4:41039554-41039573 | None:intergenic | 35.0% | |
| ATATTGAGTTCATGACGCAA+TGG | + | chr3_4:41039590-41039609 | Msa0500530:CDS | 35.0% | |
| TTCATGACGCAATGGAATAT+TGG | + | chr3_4:41039598-41039617 | Msa0500530:CDS | 35.0% | |
| CAATGGAATATTGGAGTTAG+AGG | + | chr3_4:41039607-41039626 | Msa0500530:CDS | 35.0% | |
| ! | GGTGATTCTCTTCTTTAAGA+TGG | + | chr3_4:41039644-41039663 | Msa0500530:intron | 35.0% |
| !! | TTAGTGATATGGATTAGTGG+TGG | + | chr3_4:41039695-41039714 | Msa0500530:intron | 35.0% |
| !! | GGTGCTTTGAAGAAAAAACT+AGG | - | chr3_4:41040117-41040136 | None:intergenic | 35.0% |
| ! | CAAAGCACCATTATCTTAGA+TGG | + | chr3_4:41040128-41040147 | Msa0500530:intron | 35.0% |
| ! | CTCTGAACCATCTAAGATAA+TGG | - | chr3_4:41040138-41040157 | None:intergenic | 35.0% |
| CCAGGATCTAAATTATGAAC+AGG | - | chr3_4:41040272-41040291 | None:intergenic | 35.0% | |
| CCTGTTCATAATTTAGATCC+TGG | + | chr3_4:41040269-41040288 | Msa0500530:CDS | 35.0% | |
| TAGAAAGAAGCTGCAAAGAT+AGG | - | chr3_4:41040409-41040428 | None:intergenic | 35.0% | |
| TATCTTTGCAGCTTCTTTCT+AGG | + | chr3_4:41040408-41040427 | Msa0500530:CDS | 35.0% | |
| ! | CTTCTTTCTAGGTCAGTTTT+AGG | + | chr3_4:41040419-41040438 | Msa0500530:intron | 35.0% |
| AAATTGGCTGTCATCTCAAT+TGG | + | chr3_4:41040518-41040537 | Msa0500530:CDS | 35.0% | |
| ACATGGTGCATACAAAAACA+AGG | - | chr3_4:41040642-41040661 | None:intergenic | 35.0% | |
| AGTCTTCAACATACAGATGT+GGG | - | chr3_4:41040701-41040720 | None:intergenic | 35.0% | |
| AAGTCTTCAACATACAGATG+TGG | - | chr3_4:41040702-41040721 | None:intergenic | 35.0% | |
| TGATGTTCTGTTTGAGGATT+TGG | + | chr3_4:41040796-41040815 | Msa0500530:intron | 35.0% | |
| TGGTGATTACTTACAACATG+TGG | + | chr3_4:41040977-41040996 | Msa0500530:CDS | 35.0% | |
| TTACTTACAACATGTGGTTC+AGG | + | chr3_4:41040983-41041002 | Msa0500530:CDS | 35.0% | |
| ! | GAAAATATGAGCAAGTTGGA+AGG | - | chr3_4:41041258-41041277 | None:intergenic | 35.0% |
| AAGCGAAAATATGAGCAAGT+TGG | - | chr3_4:41041262-41041281 | None:intergenic | 35.0% | |
| CGTAATACTCCTGCAATATA+TGG | - | chr3_4:41041373-41041392 | None:intergenic | 35.0% | |
| TGAGACATCGATGAAGTTTA+TGG | + | chr3_4:41041406-41041425 | Msa0500530:intron | 35.0% | |
| ! | TTGTGACATGCAGATGTTTT+TGG | + | chr3_4:41041588-41041607 | Msa0500530:intron | 35.0% |
| ! | TGTGACATGCAGATGTTTTT+GGG | + | chr3_4:41041589-41041608 | Msa0500530:intron | 35.0% |
| AGCTAACTCATAATAACGGT+CGG | - | chr3_4:41041692-41041711 | None:intergenic | 35.0% | |
| GGATTCTTACCTTAGTAACA+AGG | - | chr3_4:41041720-41041739 | None:intergenic | 35.0% | |
| CAGCATCAGACACATTATTA+TGG | - | chr3_4:41041905-41041924 | None:intergenic | 35.0% | |
| TTGTTCCTTGATATTCAGGT+AGG | + | chr3_4:41041942-41041961 | Msa0500530:intron | 35.0% | |
| AAAGAAAGCTCACAATTTGC+GGG | - | chr3_4:41042030-41042049 | None:intergenic | 35.0% | |
| TAGTCACTGACATGTTTAAC+TGG | - | chr3_4:41042342-41042361 | None:intergenic | 35.0% | |
| !! | GTGACAATTGTTCTGGAGAT+TGG | - | chr3_4:41036148-41036167 | None:intergenic | 40.0% |
| GAATTCGGAGATGTAGGATT+TGG | - | chr3_4:41036284-41036303 | None:intergenic | 40.0% | |
| ! | GGTAGTTGTTGAGTTGTGAA+CGG | - | chr3_4:41036333-41036352 | None:intergenic | 40.0% |
| !! | GTTGGTGATTTAGGGATGAA+AGG | - | chr3_4:41036354-41036373 | None:intergenic | 40.0% |
| TACCACTAACCTTGTTGATG+TGG | + | chr3_4:41036417-41036436 | Msa0500530:CDS | 40.0% | |
| ATCCACATCAACAAGGTTAG+TGG | - | chr3_4:41036422-41036441 | None:intergenic | 40.0% | |
| GTAGTAACATAAAGTAGCCG+TGG | - | chr3_4:41036993-41037012 | None:intergenic | 40.0% | |
| TTAGTGTCAATGCCATTGCT+CGG | + | chr3_4:41037089-41037108 | Msa0500530:intron | 40.0% | |
| !! | GGGGTTGATTTTGAAAACCT+TGG | + | chr3_4:41037228-41037247 | Msa0500530:intron | 40.0% |
| CAAGATCCATTCACAATTGC+AGG | + | chr3_4:41037274-41037293 | Msa0500530:intron | 40.0% | |
| GCAGGTGGAGAAACTAATAA+AGG | + | chr3_4:41037292-41037311 | Msa0500530:intron | 40.0% | |
| CAATGGAGATGTGAATTTGC+CGG | + | chr3_4:41037343-41037362 | Msa0500530:CDS | 40.0% | |
| CCAACACATAGCCTACAAAA+TGG | - | chr3_4:41037643-41037662 | None:intergenic | 40.0% | |
| ! | CCATTTTGTAGGCTATGTGT+TGG | + | chr3_4:41037640-41037659 | Msa0500530:intron | 40.0% |
| ! | TAGCTTTGCCTGTAGTTGTT+AGG | + | chr3_4:41037945-41037964 | Msa0500530:intron | 40.0% |
| AGCTTTGCCTGTAGTTGTTA+GGG | + | chr3_4:41037946-41037965 | Msa0500530:intron | 40.0% | |
| GAATCAAGTTAGAACTGACC+AGG | + | chr3_4:41038076-41038095 | Msa0500530:intron | 40.0% | |
| !! | AGCTTTTGGACCGTTTTTAG+AGG | - | chr3_4:41038254-41038273 | None:intergenic | 40.0% |
| ! | AAGAGGTAAGGGTGTACATT+TGG | + | chr3_4:41038360-41038379 | Msa0500530:intron | 40.0% |
| GAACGCTACCCATTAATTCT+TGG | - | chr3_4:41038418-41038437 | None:intergenic | 40.0% | |
| TGTACATTGCAATTGCATCC+CGG | - | chr3_4:41038688-41038707 | None:intergenic | 40.0% | |
| GGCTTATATGGATCCTAAAG+TGG | - | chr3_4:41038950-41038969 | None:intergenic | 40.0% | |
| ! | GTCATACTGCATCTGTTTCT+TGG | + | chr3_4:41038977-41038996 | Msa0500530:intron | 40.0% |
| GTGGTAAAAAATGTGAGAGG+TGG | - | chr3_4:41039063-41039082 | None:intergenic | 40.0% | |
| !! | GGTATTTGGTGCATTAATCC+AGG | + | chr3_4:41039175-41039194 | Msa0500530:intron | 40.0% |
| ! | AACCTCTCTAAGGATCGAAT+TGG | - | chr3_4:41039224-41039243 | None:intergenic | 40.0% |
| TAGCAAAGAGAACCTCTCTA+AGG | - | chr3_4:41039234-41039253 | None:intergenic | 40.0% | |
| GCTATTCAAAAGGGAAAACC+AGG | + | chr3_4:41039250-41039269 | Msa0500530:CDS | 40.0% | |
| ! | AAACCAGGTGCATTTTCTCT+TGG | + | chr3_4:41039265-41039284 | Msa0500530:CDS | 40.0% |
| CAAAACTGTCTGCCACATAA+AGG | - | chr3_4:41039425-41039444 | None:intergenic | 40.0% | |
| TATCTTAGATGGTTCAGAGC+AGG | + | chr3_4:41040139-41040158 | Msa0500530:intron | 40.0% | |
| TTTCAGGATCGACCCTAATA+TGG | + | chr3_4:41040167-41040186 | Msa0500530:intron | 40.0% | |
| CTCATATCTTCAATTGCCTC+AGG | + | chr3_4:41040192-41040211 | Msa0500530:intron | 40.0% | |
| !! | TCTTGATAATTTGCTTCGCC+AGG | - | chr3_4:41040290-41040309 | None:intergenic | 40.0% |
| GGAACAAAGTCTAACTCTGT+TGG | + | chr3_4:41040319-41040338 | Msa0500530:CDS | 40.0% | |
| ! | TGGAGAGTTTGAGATTGTGT+TGG | + | chr3_4:41040339-41040358 | Msa0500530:CDS | 40.0% |
| GGAACTTGTCAGAACAAGAA+AGG | - | chr3_4:41040382-41040401 | None:intergenic | 40.0% | |
| !!! | CTTTCTAGGTCAGTTTTAGG+TGG | + | chr3_4:41040422-41040441 | Msa0500530:intron | 40.0% |
| AAGAGTCGTAATACAAGCAC+CGG | + | chr3_4:41040549-41040568 | Msa0500530:CDS | 40.0% | |
| ATTGCCAGATATGCGAAATG+AGG | + | chr3_4:41040867-41040886 | Msa0500530:intron | 40.0% | |
| ACATCCTCATTTCGCATATC+TGG | - | chr3_4:41040874-41040893 | None:intergenic | 40.0% | |
| ! | TGTTTAGAGAAGCATGTTCG+TGG | + | chr3_4:41040957-41040976 | Msa0500530:CDS | 40.0% |
| !! | TTACTGACTCAAGGACATTG+GGG | - | chr3_4:41041025-41041044 | None:intergenic | 40.0% |
| !! | CTTACTGACTCAAGGACATT+GGG | - | chr3_4:41041026-41041045 | None:intergenic | 40.0% |
| CTAATAAGCCTCTACCTGTT+AGG | + | chr3_4:41041341-41041360 | Msa0500530:CDS | 40.0% | |
| ATATATGGGCAATGCCTAAC+AGG | - | chr3_4:41041358-41041377 | None:intergenic | 40.0% | |
| ATCGATGTCTCATACCTCTA+GGG | - | chr3_4:41041398-41041417 | None:intergenic | 40.0% | |
| !! | GCCCTGATTATTTCTTTTCG+TGG | + | chr3_4:41041443-41041462 | Msa0500530:intron | 40.0% |
| !!! | ATGCAGATGTTTTTGGGTGA+GGG | + | chr3_4:41041595-41041614 | Msa0500530:intron | 40.0% |
| TAATCTCAGTTGCAGCACAA+AGG | - | chr3_4:41041669-41041688 | None:intergenic | 40.0% | |
| CGGCAGCTAACTCATAATAA+CGG | - | chr3_4:41041696-41041715 | None:intergenic | 40.0% | |
| CGTTATTATGAGTTAGCTGC+CGG | + | chr3_4:41041694-41041713 | Msa0500530:CDS | 40.0% | |
| TCTTACCTTAGTAACAAGGC+CGG | - | chr3_4:41041716-41041735 | None:intergenic | 40.0% | |
| GCAGTTGTTCCTTGATATTC+AGG | + | chr3_4:41041938-41041957 | Msa0500530:CDS | 40.0% | |
| TCATGCCTACCTGAATATCA+AGG | - | chr3_4:41041950-41041969 | None:intergenic | 40.0% | |
| ATACTTGCACATGCAAGACA+TGG | + | chr3_4:41041969-41041988 | Msa0500530:intron | 40.0% | |
| TTGCGTCCTATCGTTCTTTA+TGG | + | chr3_4:41042131-41042150 | Msa0500530:CDS | 40.0% | |
| ACACTGCCATAAAGAACGAT+AGG | - | chr3_4:41042140-41042159 | None:intergenic | 40.0% | |
| ATTGCATTCTGCATATCTGC+TGG | - | chr3_4:41042169-41042188 | None:intergenic | 40.0% | |
| GATATGTGATACGCTGGGAT+CGG | - | chr3_4:41036184-41036203 | None:intergenic | 45.0% | |
| ! | GGATTTGGAATCGAAGTCTG+AGG | - | chr3_4:41036269-41036288 | None:intergenic | 45.0% |
| TCTCATCAATCGCGATCACT+CGG | + | chr3_4:41036381-41036400 | Msa0500530:CDS | 45.0% | |
| AAGCTCCAAAGTCTCTCTAG+CGG | - | chr3_4:41036572-41036591 | None:intergenic | 45.0% | |
| TGAAAACCTTGGGGATGAGA+TGG | + | chr3_4:41037239-41037258 | Msa0500530:intron | 45.0% | |
| GATCCATTCACAATTGCAGG+TGG | + | chr3_4:41037277-41037296 | Msa0500530:intron | 45.0% | |
| TCTCCACCTGCAATTGTGAA+TGG | - | chr3_4:41037283-41037302 | None:intergenic | 45.0% | |
| CGGCAAATTCACATCTCCAT+TGG | - | chr3_4:41037345-41037364 | None:intergenic | 45.0% | |
| GAAGCTTGATGAGAGACCAA+TGG | + | chr3_4:41037613-41037632 | Msa0500530:intron | 45.0% | |
| GATTATCGACCTTCAATGCC+TGG | - | chr3_4:41037895-41037914 | None:intergenic | 45.0% | |
| CCACTAACCCTAACAACTAC+AGG | - | chr3_4:41037956-41037975 | None:intergenic | 45.0% | |
| CCTGTAGTTGTTAGGGTTAG+TGG | + | chr3_4:41037953-41037972 | Msa0500530:intron | 45.0% | |
| AAGCTTGGCACATTGCTTTG+TGG | + | chr3_4:41038649-41038668 | Msa0500530:CDS | 45.0% | |
| TTGGCACATTGCTTTGTGGA+TGG | + | chr3_4:41038653-41038672 | Msa0500530:CDS | 45.0% | |
| ! | TTGTGGATGGTCTAGAACAC+CGG | + | chr3_4:41038666-41038685 | Msa0500530:intron | 45.0% |
| TGGACATTGTCAATCCTTGC+TGG | + | chr3_4:41038997-41039016 | Msa0500530:intron | 45.0% | |
| GGACATTGTCAATCCTTGCT+GGG | + | chr3_4:41038998-41039017 | Msa0500530:intron | 45.0% | |
| GACATTGTCAATCCTTGCTG+GGG | + | chr3_4:41038999-41039018 | Msa0500530:intron | 45.0% | |
| CTTCCAAGAGAAAATGCACC+TGG | - | chr3_4:41039271-41039290 | None:intergenic | 45.0% | |
| TTAGCAACAGCAGATCTGGA+CGG | - | chr3_4:41039550-41039569 | None:intergenic | 45.0% | |
| ! | ATTAGTGGTGGCCTTGAGTA+AGG | + | chr3_4:41039707-41039726 | Msa0500530:intron | 45.0% |
| TTCAGAGCAGGCAACATTTC+AGG | + | chr3_4:41040151-41040170 | Msa0500530:intron | 45.0% | |
| CTTCAATTGCCTCAGGTTTC+AGG | + | chr3_4:41040199-41040218 | Msa0500530:intron | 45.0% | |
| !! | CTGCTATTTCCTGAAACCTG+AGG | - | chr3_4:41040211-41040230 | None:intergenic | 45.0% |
| CTCAGGTTTCAGGAAATAGC+AGG | + | chr3_4:41040209-41040228 | Msa0500530:intron | 45.0% | |
| TGTCATCTCAATTGGCTGCA+AGG | + | chr3_4:41040526-41040545 | Msa0500530:CDS | 45.0% | |
| !! | TACTGACTCAAGGACATTGG+GGG | - | chr3_4:41041024-41041043 | None:intergenic | 45.0% |
| !! | CCTTACTGACTCAAGGACAT+TGG | - | chr3_4:41041027-41041046 | None:intergenic | 45.0% |
| CCAATGTCCTTGAGTCAGTA+AGG | + | chr3_4:41041024-41041043 | Msa0500530:CDS | 45.0% | |
| !! | AGGCAGAGCATTTTACAGAG+TGG | + | chr3_4:41041044-41041063 | Msa0500530:CDS | 45.0% |
| !! | TCGACTGATTTTTCCACCAG+TGG | - | chr3_4:41041119-41041138 | None:intergenic | 45.0% |
| ACTGGTGGAAAAATCAGTCG+AGG | + | chr3_4:41041118-41041137 | Msa0500530:CDS | 45.0% | |
| GTGGAAAAATCAGTCGAGGT+AGG | + | chr3_4:41041122-41041141 | Msa0500530:intron | 45.0% | |
| ! | TGAGCAAGTTGGAAGGGAAA+CGG | - | chr3_4:41041251-41041270 | None:intergenic | 45.0% |
| CTTTCGACAGATGAGTGGAA+TGG | + | chr3_4:41041300-41041319 | Msa0500530:CDS | 45.0% | |
| ! | AGGCATTGCCCATATATTGC+AGG | + | chr3_4:41041361-41041380 | Msa0500530:CDS | 45.0% |
| TCGATGTCTCATACCTCTAG+GGG | - | chr3_4:41041397-41041416 | None:intergenic | 45.0% | |
| CATCGATGTCTCATACCTCT+AGG | - | chr3_4:41041399-41041418 | None:intergenic | 45.0% | |
| ! | TTTCGTGGTTACTGGTTAGC+TGG | + | chr3_4:41041458-41041477 | Msa0500530:intron | 45.0% |
| !!! | CATGCAGATGTTTTTGGGTG+AGG | + | chr3_4:41041594-41041613 | Msa0500530:intron | 45.0% |
| !!! | TGCAGATGTTTTTGGGTGAG+GGG | + | chr3_4:41041596-41041615 | Msa0500530:intron | 45.0% |
| AAAGTTTACGGGCATACTCC+TGG | - | chr3_4:41042084-41042103 | None:intergenic | 45.0% | |
| CCCTAGCGCATAAAGTTTAC+GGG | - | chr3_4:41042095-41042114 | None:intergenic | 45.0% | |
| CCCGTAAACTTTATGCGCTA+GGG | + | chr3_4:41042092-41042111 | Msa0500530:CDS | 45.0% | |
| CCCCTAGCGCATAAAGTTTA+CGG | - | chr3_4:41042096-41042115 | None:intergenic | 45.0% | |
| CCGTAAACTTTATGCGCTAG+GGG | + | chr3_4:41042093-41042112 | Msa0500530:CDS | 45.0% | |
| TCGTTCTTTATGGCAGTGTG+TGG | + | chr3_4:41042141-41042160 | Msa0500530:CDS | 45.0% | |
| TTGCCTATGTGGAGTCAATG+TGG | + | chr3_4:41042203-41042222 | Msa0500530:three_prime_UTR | 45.0% | |
| CAAGAAAGCAACCAGTCTAC+AGG | - | chr3_4:41042229-41042248 | None:intergenic | 45.0% | |
| ! | AGACTGGTTGCTTTCTTGCT+TGG | + | chr3_4:41042231-41042250 | Msa0500530:three_prime_UTR | 45.0% |
| !!! | AATTTTTTTTATAAATTAGT+TGG | + | chr3_4:41037545-41037564 | Msa0500530:intron | 5.0% |
| !!! | AATTTTATTATAATATGAAA+AGG | + | chr3_4:41038302-41038321 | Msa0500530:intron | 5.0% |
| !!! | ATTTTATTATAATATGAAAA+GGG | + | chr3_4:41038303-41038322 | Msa0500530:intron | 5.0% |
| !! | AATATGTATAAATATTTAAA+TGG | + | chr3_4:41039767-41039786 | Msa0500530:intron | 5.0% |
| ! | TGGCGGATATGTGATACGCT+GGG | - | chr3_4:41036189-41036208 | None:intergenic | 50.0% |
| ATGCGGGTTTGAACCAGAGA+GGG | - | chr3_4:41036237-41036256 | None:intergenic | 50.0% | |
| ATCGAAGTCTGAGGAGAGGA+AGG | - | chr3_4:41036260-41036279 | None:intergenic | 50.0% | |
| TGGAATCGAAGTCTGAGGAG+AGG | - | chr3_4:41036264-41036283 | None:intergenic | 50.0% | |
| GGTTCGGAATTCGGAGATGT+AGG | - | chr3_4:41036290-41036309 | None:intergenic | 50.0% | |
| !! | TGTGAACGGAGAGTGTCGAA+GGG | - | chr3_4:41036319-41036338 | None:intergenic | 50.0% |
| !! | TTGTGAACGGAGAGTGTCGA+AGG | - | chr3_4:41036320-41036339 | None:intergenic | 50.0% |
| CTGCGTCATCCACATCAACA+AGG | - | chr3_4:41036429-41036448 | None:intergenic | 50.0% | |
| TTCTCTCTCAGCTCCACAAG+CGG | - | chr3_4:41036469-41036488 | None:intergenic | 50.0% | |
| TGCTTCCGCTAGAGAGACTT+TGG | + | chr3_4:41036564-41036583 | Msa0500530:CDS | 50.0% | |
| TGACTTCCATCTCATCCCCA+AGG | - | chr3_4:41037248-41037267 | None:intergenic | 50.0% | |
| GGGGATGAGATGGAAGTCAT+TGG | + | chr3_4:41037249-41037268 | Msa0500530:intron | 50.0% | |
| AGAGACTCAAAGCATGCTGC+TGG | + | chr3_4:41037427-41037446 | Msa0500530:CDS | 50.0% | |
| ! | TGTGGATGGTCTAGAACACC+GGG | + | chr3_4:41038667-41038686 | Msa0500530:intron | 50.0% |
| CAAGAAGGAATTCCCCAGCA+AGG | - | chr3_4:41039014-41039033 | None:intergenic | 50.0% | |
| CTTGCTGGGGAATTCCTTCT+TGG | + | chr3_4:41039012-41039031 | Msa0500530:intron | 50.0% | |
| GGCCAATTCGATCCTTAGAG+AGG | + | chr3_4:41039219-41039238 | Msa0500530:CDS | 50.0% | |
| TTGAGTAAGGTCGGGATGAG+CGG | + | chr3_4:41039720-41039739 | Msa0500530:intron | 50.0% | |
| GAAGCTGCAAAGATAGGCGA+AGG | - | chr3_4:41040403-41040422 | None:intergenic | 50.0% | |
| !! | GTAATACAAGCACCGGCACT+GGG | + | chr3_4:41040556-41040575 | Msa0500530:CDS | 50.0% |
| !! | TGCTCTGCCTTACTGACTCA+AGG | - | chr3_4:41041034-41041053 | None:intergenic | 50.0% |
| CAAAGCAATTGTGGAGCCAC+TGG | + | chr3_4:41041100-41041119 | Msa0500530:CDS | 50.0% | |
| ! | AGCAAGTTGGAAGGGAAACG+GGG | - | chr3_4:41041249-41041268 | None:intergenic | 50.0% |
| ! | GAGCAAGTTGGAAGGGAAAC+GGG | - | chr3_4:41041250-41041269 | None:intergenic | 50.0% |
| CACTCATCTGTCGAAAGTCC+TGG | - | chr3_4:41041297-41041316 | None:intergenic | 50.0% | |
| CAGGACTTTCGACAGATGAG+TGG | + | chr3_4:41041295-41041314 | Msa0500530:intron | 50.0% | |
| !! | AGGAGTATTACGTCCCCTAG+AGG | + | chr3_4:41041381-41041400 | Msa0500530:CDS | 50.0% |
| !!! | GCAGATGTTTTTGGGTGAGG+GGG | + | chr3_4:41041597-41041616 | Msa0500530:intron | 50.0% |
| GGTGACAATATGCGAGAGGA+AGG | - | chr3_4:41042063-41042082 | None:intergenic | 50.0% | |
| TCCTCTCGCATATTGTCACC+AGG | + | chr3_4:41042063-41042082 | Msa0500530:intron | 50.0% | |
| TCCTGGTGACAATATGCGAG+AGG | - | chr3_4:41042067-41042086 | None:intergenic | 50.0% | |
| GCCCGTAAACTTTATGCGCT+AGG | + | chr3_4:41042091-41042110 | Msa0500530:CDS | 50.0% | |
| !! | AGGCCACATTGACTCCACAT+AGG | - | chr3_4:41042209-41042228 | None:intergenic | 50.0% |
| AGTCAATGTGGCCTGTAGAC+TGG | + | chr3_4:41042215-41042234 | Msa0500530:three_prime_UTR | 50.0% | |
| !! | GTGGCGGATATGTGATACGC+TGG | - | chr3_4:41036190-41036209 | None:intergenic | 55.0% |
| ATCGGAGAAGAGGTGAGTGG+CGG | - | chr3_4:41036206-41036225 | None:intergenic | 55.0% | |
| GTCATCGGAGAAGAGGTGAG+TGG | - | chr3_4:41036209-41036228 | None:intergenic | 55.0% | |
| GGTGTGAGTCATCGGAGAAG+AGG | - | chr3_4:41036216-41036235 | None:intergenic | 55.0% | |
| ! | CCAGAGAGGGTGTGAGTCAT+CGG | - | chr3_4:41036224-41036243 | None:intergenic | 55.0% |
| GATGCGGGTTTGAACCAGAG+AGG | - | chr3_4:41036238-41036257 | None:intergenic | 55.0% | |
| TCTGAGGAGAGGAAGGATGC+GGG | - | chr3_4:41036253-41036272 | None:intergenic | 55.0% | |
| GTCTGAGGAGAGGAAGGATG+CGG | - | chr3_4:41036254-41036273 | None:intergenic | 55.0% | |
| GGGGACGAAGGTTCGGAATT+CGG | - | chr3_4:41036299-41036318 | None:intergenic | 55.0% | |
| TGTCGAAGGGGACGAAGGTT+CGG | - | chr3_4:41036306-41036325 | None:intergenic | 55.0% | |
| !! | GTGAACGGAGAGTGTCGAAG+GGG | - | chr3_4:41036318-41036337 | None:intergenic | 55.0% |
| TCTCTCTCAGCTCCACAAGC+GGG | - | chr3_4:41036468-41036487 | None:intergenic | 55.0% | |
| GAGTTGCCTAGTGTTCGCTC+CGG | + | chr3_4:41037314-41037333 | Msa0500530:CDS | 55.0% | |
| CACATCTCCATTGGACCAGC+CGG | - | chr3_4:41037336-41037355 | None:intergenic | 55.0% | |
| GTGCTGGATCATCTGGGGAT+GGG | + | chr3_4:41038825-41038844 | Msa0500530:CDS | 55.0% | |
| ! | GTGGTGGCCTTGAGTAAGGT+CGG | + | chr3_4:41039711-41039730 | Msa0500530:intron | 55.0% |
| ! | TGGTGGCCTTGAGTAAGGTC+GGG | + | chr3_4:41039712-41039731 | Msa0500530:intron | 55.0% |
| GCTCATCCCGACCTTACTCA+AGG | - | chr3_4:41039721-41039740 | None:intergenic | 55.0% | |
| !! | CGTAATACAAGCACCGGCAC+TGG | + | chr3_4:41040555-41040574 | Msa0500530:CDS | 55.0% |
| AGCAATTGTGGAGCCACTGG+TGG | + | chr3_4:41041103-41041122 | Msa0500530:CDS | 55.0% | |
| GAAGGGAAACGGGGAAGCAA+AGG | - | chr3_4:41041240-41041259 | None:intergenic | 55.0% | |
| GGGCAATGCCTAACAGGTAG+AGG | - | chr3_4:41041352-41041371 | None:intergenic | 55.0% | |
| !! | AGCTGCCGGCCTTGTTACTA+AGG | + | chr3_4:41041708-41041727 | Msa0500530:CDS | 55.0% |
| AGAGTGCACAGAGACGAGCA+GGG | + | chr3_4:41041862-41041881 | Msa0500530:CDS | 55.0% | |
| CCGATGACTCACACCCTCTC+TGG | + | chr3_4:41036221-41036240 | Msa0500530:CDS | 60.0% | |
| !! | GAGAGTGTCGAAGGGGACGA+AGG | - | chr3_4:41036311-41036330 | None:intergenic | 60.0% |
| CTCTCTCAGCTCCACAAGCG+GGG | - | chr3_4:41036467-41036486 | None:intergenic | 60.0% | |
| CCACGGCTGATGACCCATGT+GGG | - | chr3_4:41038805-41038824 | None:intergenic | 60.0% | |
| CCACATGGGTCATCAGCCGT+GGG | + | chr3_4:41038803-41038822 | Msa0500530:CDS | 60.0% | |
| CCCAGATGATCCAGCACCCA+CGG | - | chr3_4:41038822-41038841 | None:intergenic | 60.0% | |
| !! | CCGTGGGTGCTGGATCATCT+GGG | + | chr3_4:41038819-41038838 | Msa0500530:CDS | 60.0% |
| !! | CGTGGGTGCTGGATCATCTG+GGG | + | chr3_4:41038820-41038839 | Msa0500530:CDS | 60.0% |
| ! | GGTGCTGGATCATCTGGGGA+TGG | + | chr3_4:41038824-41038843 | Msa0500530:CDS | 60.0% |
| AGTCCATTCGCACCCAGTGC+CGG | - | chr3_4:41040571-41040590 | None:intergenic | 60.0% | |
| CAGAGTGCACAGAGACGAGC+AGG | + | chr3_4:41041861-41041880 | Msa0500530:CDS | 60.0% | |
| GAGTGCACAGAGACGAGCAG+GGG | + | chr3_4:41041863-41041882 | Msa0500530:CDS | 60.0% | |
| GAGACGAGCAGGGGCAAGTT+CGG | + | chr3_4:41041872-41041891 | Msa0500530:CDS | 60.0% | |
| ACGAATGCGTGCCCCGCTTG+TGG | + | chr3_4:41036453-41036472 | Msa0500530:CDS | 65.0% | |
| TGCCTAGTGTTCGCTCCGGC+TGG | + | chr3_4:41037318-41037337 | Msa0500530:CDS | 65.0% | |
| GACCAGCCGGAGCGAACACT+AGG | - | chr3_4:41037323-41037342 | None:intergenic | 65.0% | |
| ! | GTTCGCTCCGGCTGGTCCAA+TGG | + | chr3_4:41037326-41037345 | Msa0500530:CDS | 65.0% |
| CCCACATGGGTCATCAGCCG+TGG | + | chr3_4:41038802-41038821 | Msa0500530:CDS | 65.0% | |
| CCCACGGCTGATGACCCATG+TGG | - | chr3_4:41038806-41038825 | None:intergenic | 65.0% | |
| !! | GCCGTGGGTGCTGGATCATC+TGG | + | chr3_4:41038818-41038837 | Msa0500530:CDS | 65.0% |
| GGGTCATCAGCCGTGGGTGC+TGG | + | chr3_4:41038809-41038828 | Msa0500530:CDS | 70.0% | |
| ! | GCACCGGCACTGGGTGCGAA+TGG | + | chr3_4:41040565-41040584 | Msa0500530:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41036074 | 41042396 | 41036074 | ID=Msa0500530;Name=Msa0500530 |
| chr3_4 | mRNA | 41036074 | 41042396 | 41036074 | ID=Msa0500530-mRNA-1;Parent=Msa0500530;Name=Msa0500530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|0.83|0.76|1|0.83|0.84|13|198|746 |
| chr3_4 | exon | 41036074 | 41036621 | 41036074 | ID=Msa0500530-mRNA-1:exon:8412;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41037296 | 41037502 | 41037296 | ID=Msa0500530-mRNA-1:exon:8413;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41038587 | 41038674 | 41038587 | ID=Msa0500530-mRNA-1:exon:8414;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41038681 | 41038923 | 41038681 | ID=Msa0500530-mRNA-1:exon:8415;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41039197 | 41039349 | 41039197 | ID=Msa0500530-mRNA-1:exon:8416;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41039539 | 41039629 | 41039539 | ID=Msa0500530-mRNA-1:exon:8417;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41040214 | 41040429 | 41040214 | ID=Msa0500530-mRNA-1:exon:8418;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41040512 | 41040620 | 41040512 | ID=Msa0500530-mRNA-1:exon:8419;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41040939 | 41041139 | 41040939 | ID=Msa0500530-mRNA-1:exon:8420;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41041298 | 41041402 | 41041298 | ID=Msa0500530-mRNA-1:exon:8421;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41041601 | 41041729 | 41041601 | ID=Msa0500530-mRNA-1:exon:8422;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41041825 | 41041959 | 41041825 | ID=Msa0500530-mRNA-1:exon:8423;Parent=Msa0500530-mRNA-1 |
| chr3_4 | exon | 41042085 | 41042396 | 41042085 | ID=Msa0500530-mRNA-1:exon:8424;Parent=Msa0500530-mRNA-1 |
| chr3_4 | five_prime_UTR | 41036074 | 41036171 | 41036074 | ID=Msa0500530-mRNA-1:five_prime_utr;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41036172 | 41036621 | 41036172 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41037296 | 41037502 | 41037296 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41038587 | 41038674 | 41038587 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41038681 | 41038923 | 41038681 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41039197 | 41039349 | 41039197 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41039539 | 41039629 | 41039539 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41040214 | 41040429 | 41040214 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41040512 | 41040620 | 41040512 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41040939 | 41041139 | 41040939 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41041298 | 41041402 | 41041298 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41041601 | 41041729 | 41041601 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41041825 | 41041959 | 41041825 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | CDS | 41042085 | 41042198 | 41042085 | ID=Msa0500530-mRNA-1:cds;Parent=Msa0500530-mRNA-1 |
| chr3_4 | three_prime_UTR | 41042199 | 41042396 | 41042199 | ID=Msa0500530-mRNA-1:three_prime_utr;Parent=Msa0500530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
