AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503630 MtrunA17_Chr3g0103391 98.480 329 5 0 1 329 1 329 0.0 663
Msa0503630 MtrunA17_Chr8g0352251 46.445 211 87 7 20 226 21 209 1.42e-46 159
Msa0503630 MtrunA17_Chr2g0300261 60.577 104 36 3 128 226 30 133 1.02e-35 129
Msa0503630 MtrunA17_Chr2g0292411 56.731 104 40 1 144 242 81 184 1.35e-32 120
Msa0503630 MtrunA17_Chr8g0343451 54.717 106 44 2 124 226 116 220 2.56e-32 122
Msa0503630 MtrunA17_Chr7g0267581 41.579 190 88 8 104 285 106 280 1.75e-30 117
Msa0503630 MtrunA17_Chr2g0329811 49.624 133 52 3 112 229 114 246 2.60e-30 117
Msa0503630 MtrunA17_Chr1g0177091 50.427 117 44 4 124 237 126 231 1.18e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503630 AT5G12840.4 54.412 272 115 7 1 268 1 267 4.98e-86 260
Msa0503630 AT5G12840.2 54.412 272 115 7 1 268 1 267 4.98e-86 260
Msa0503630 AT5G12840.5 54.212 273 115 8 1 268 1 268 2.75e-84 256
Msa0503630 AT5G12840.3 54.212 273 115 8 1 268 1 268 2.75e-84 256
Msa0503630 AT5G12840.1 54.212 273 115 8 1 268 1 268 2.75e-84 256
Msa0503630 AT3G20910.1 59.361 219 59 7 116 329 110 303 3.89e-74 231
Msa0503630 AT1G30500.1 59.091 110 40 3 124 231 52 158 2.98e-33 121
Msa0503630 AT1G30500.2 56.757 111 45 2 124 231 52 162 3.35e-32 119
Msa0503630 AT1G72830.1 57.143 98 39 2 132 226 137 234 3.20e-31 120
Msa0503630 AT2G34720.1 45.714 140 70 2 125 258 48 187 5.46e-31 116
Msa0503630 AT2G34720.2 47.015 134 65 2 131 258 19 152 4.66e-30 112
Msa0503630 AT2G34720.3 47.015 134 65 2 131 258 19 152 4.66e-30 112
Msa0503630 AT1G17590.3 57.732 97 35 3 132 226 135 227 6.95e-30 116
Msa0503630 AT1G17590.2 57.732 97 35 3 132 226 135 227 6.95e-30 116
Msa0503630 AT1G17590.4 57.732 97 35 3 132 226 135 227 6.95e-30 116
Msa0503630 AT1G17590.1 57.732 97 35 3 132 226 135 227 6.95e-30 116
Msa0503630 AT1G72830.2 56.566 99 39 3 132 226 137 235 1.67e-29 115
Msa0503630 AT1G54160.1 43.066 137 68 3 95 226 102 233 7.81e-29 113
Msa0503630 AT3G14020.2 54.167 96 39 3 135 226 132 226 5.81e-27 108
Msa0503630 AT3G14020.1 54.167 96 39 3 135 226 132 226 5.81e-27 108
Msa0503630 AT5G06510.1 31.776 214 110 8 27 235 13 195 9.31e-22 93.2
Msa0503630 AT5G06510.5 31.776 214 110 8 27 235 13 195 9.31e-22 93.2
Msa0503630 AT5G06510.2 31.776 214 110 8 27 235 13 195 9.31e-22 93.2
Msa0503630 AT5G06510.6 31.776 214 110 8 27 235 13 195 9.31e-22 93.2
Msa0503630 AT5G06510.4 45.872 109 43 4 130 235 5 100 1.25e-21 90.5
Msa0503630 AT5G06510.7 45.872 109 43 4 130 235 5 100 1.25e-21 90.5
Msa0503630 AT5G06510.3 45.872 109 43 4 130 235 51 146 5.42e-21 90.1
Msa0503630 AT3G05690.1 44.928 138 55 6 114 242 88 213 7.73e-21 91.3
Msa0503630 AT3G05690.2 34.468 235 110 11 22 242 46 250 1.28e-20 91.3
Msa0503630 AT1G72830.3 48.421 95 27 2 132 226 137 209 5.77e-19 86.3

Find 145 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATCAGGATCCATATTA+TGG 0.185298 3_4:+47064425 Msa0503630:CDS
GTATATCCTAGTGATATATT+TGG 0.239472 3_4:+47066542 Msa0503630:three_prime_UTR
TACCAAACTCTCTTGTTTCT+TGG 0.260579 3_4:+47066839 Msa0503630:three_prime_UTR
CCTCGGTTGATTTGCAGTTT+CGG 0.272870 3_4:-47063660 None:intergenic
TTCCTCATTCATCTCACTAT+TGG 0.285307 3_4:-47063843 None:intergenic
CTCAAGGGGCAAAGGCATTC+TGG 0.314340 3_4:-47064642 None:intergenic
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3_4:+47066415 Msa0503630:CDS
GTTTGTTCTGTAAACTTAAC+TGG 0.315292 3_4:+47066862 Msa0503630:three_prime_UTR
TTGATTTGCAGTTTCGGACT+TGG 0.324341 3_4:-47063654 None:intergenic
ACCAAACTCTCTTGTTTCTT+GGG 0.332279 3_4:+47066840 Msa0503630:three_prime_UTR
GCATGAGGCACTCCTATAAA+AGG 0.333358 3_4:-47064620 None:intergenic
TATGCAATCTTCAAGGTATC+AGG 0.338770 3_4:+47066384 Msa0503630:CDS
ATATGCCGGCAAATCATTCT+TGG 0.341646 3_4:+47066601 Msa0503630:three_prime_UTR
TTCTAAAGCACCTGATTGAT+TGG 0.345684 3_4:-47063903 None:intergenic
CCAGACATTGTTTGCGCTAC+AGG 0.346287 3_4:-47063752 None:intergenic
TGTTTAGCGTTCACATAAAC+AGG 0.347626 3_4:-47064677 None:intergenic
CAAAGACTGGCCTTCCTCAT+TGG 0.355087 3_4:-47063819 None:intergenic
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3_4:-47066302 None:intergenic
TTCTTCTTGATAGGAAATTA+CGG 0.368800 3_4:+47064060 Msa0503630:intron
GCATACCATTGTTGTTGTTA+TGG 0.371144 3_4:-47066366 None:intergenic
GTAGTCAACTTCCGCTGATA+TGG 0.374231 3_4:+47066771 Msa0503630:three_prime_UTR
GCACGAGGATCAAACGAAAA+TGG 0.374507 3_4:+47066331 Msa0503630:CDS
ACCCAAGAAACAAGAGAGTT+TGG 0.375454 3_4:-47066841 None:intergenic
ATGTGCTACAAATCCTTATC+AGG 0.378434 3_4:+47064412 Msa0503630:CDS
GCACCTTACCTTGGTTATCT+TGG 0.390028 3_4:+47066572 Msa0503630:three_prime_UTR
ATGGTGTGAATGATATAATA+TGG 0.403792 3_4:+47066641 Msa0503630:three_prime_UTR
CTTATCAGGATCCATATTAT+GGG 0.407754 3_4:+47064426 Msa0503630:CDS
TCGCAATCAATTAGTTCATC+TGG 0.408092 3_4:+47066247 Msa0503630:CDS
CGTGCATCTTGTCGCATGTT+GGG 0.410556 3_4:-47066313 None:intergenic
GAAAACTGATGGTGAGGCCT+CGG 0.419006 3_4:+47066192 Msa0503630:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.429841 3_4:+47066205 Msa0503630:CDS
AAAAGCCAAGAATGATTTGC+CGG 0.433683 3_4:-47066606 None:intergenic
CCTGTAGCGCAAACAATGTC+TGG 0.435636 3_4:+47063752 Msa0503630:CDS
ACAATCAAGAGAGGATGAAT+TGG 0.445592 3_4:-47063777 None:intergenic
TCCTCTCTTGATTGTCCCAA+TGG 0.445841 3_4:+47063785 Msa0503630:CDS
GGGGAGAAGAATGGTGATTG+GGG 0.447626 3_4:+47066665 Msa0503630:three_prime_UTR
TGTCTAGATTCATGAAGATA+TGG 0.448950 3_4:-47066121 None:intergenic
CCATAATATGGATCCTGATA+AGG 0.451848 3_4:-47064425 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3_4:+47066284 Msa0503630:CDS
TGGTGTGAATGATATAATAT+GGG 0.455479 3_4:+47066642 Msa0503630:three_prime_UTR
TCTAAAGCACCTGATTGATT+GGG 0.457401 3_4:-47063902 None:intergenic
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3_4:-47066458 None:intergenic
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3_4:+47066416 Msa0503630:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3_4:+47066154 Msa0503630:CDS
CCTGCTGCTCCCAATCAATC+AGG 0.469165 3_4:+47063893 Msa0503630:CDS
CCTGATTGATTGGGAGCAGC+AGG 0.471231 3_4:-47063893 None:intergenic
ATTGAAATTGAAAATTCAAA+GGG 0.474297 3_4:-47062657 None:intergenic
AATGCCTTTGCCCCTTGAGA+TGG 0.476507 3_4:+47064646 Msa0503630:CDS
AATTGAAATTGAAAATTCAA+AGG 0.477666 3_4:-47062658 None:intergenic
GTCTTCGCCTCAGAATTCCT+TGG 0.480874 3_4:-47064703 None:intergenic
ATTGATTGCGACGACAAGAC+TGG 0.480972 3_4:-47066235 None:intergenic
GCTGATATGGATGGATGGTC+AGG 0.489141 3_4:+47066784 Msa0503630:three_prime_UTR
ACTCCTCAGCTGGAACTTGT+TGG 0.498120 3_4:+47064147 Msa0503630:CDS
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3_4:+47066211 Msa0503630:CDS
ATTGGATTCTGAATCACCAT+TGG 0.502864 3_4:-47063801 None:intergenic
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3_4:+47066403 Msa0503630:CDS
AAAGAGAGAGAGAAAGAGAG+AGG 0.503374 3_4:+47062616 Msa0503630:five_prime_UTR
TTGGATTCTGAATCACCATT+GGG 0.505994 3_4:-47063800 None:intergenic
GTTCTGTAAACTTAACTGGT+TGG 0.508613 3_4:+47066866 Msa0503630:three_prime_UTR
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3_4:-47066173 None:intergenic
AAAACTGATGGTGAGGCCTC+GGG 0.514204 3_4:+47066193 Msa0503630:CDS
GAACCTTGGTGGCGTGGTGT+TGG 0.516801 3_4:+47063722 Msa0503630:CDS
CCTCACACAGACTCCTCAGC+TGG 0.517659 3_4:+47064137 Msa0503630:CDS
GAAGCTCATAAAATCTAGAA+AGG 0.519482 3_4:+47064754 Msa0503630:CDS
TCGTGCATCTTGTCGCATGT+TGG 0.520214 3_4:-47066314 None:intergenic
GTGCTAAAGCAGAGCTTGAA+AGG 0.520912 3_4:+47064732 Msa0503630:CDS
ACCATTGTTGTTGTTATGGT+AGG 0.521132 3_4:-47066362 None:intergenic
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3_4:+47066404 Msa0503630:CDS
ACAATGGTATGCAATCTTCA+AGG 0.528717 3_4:+47066377 Msa0503630:CDS
AAGAGAGAGAGAAAGAGAGA+GGG 0.531234 3_4:+47062617 Msa0503630:five_prime_UTR
TGATGGTGAGGCCTCGGGAA+AGG 0.531610 3_4:+47066198 Msa0503630:CDS
GTGGTGTTTATTCTGAACCT+TGG 0.535143 3_4:+47063708 Msa0503630:CDS
CAGGTTCTTGAGCCATCTCA+AGG 0.541180 3_4:-47064658 None:intergenic
AGCTTATCCTCACCAGCCGT+TGG 0.544838 3_4:+47064460 Msa0503630:CDS
CTATCCTCCCATGCAGGAAG+GGG 0.545157 3_4:-47066502 None:intergenic
ATCTATCCTCCCATGCAGGA+AGG 0.546592 3_4:-47066504 None:intergenic
CATTCACCAAATATATCACT+AGG 0.549550 3_4:-47066548 None:intergenic
TCTCACTATTGGACAAAGAC+TGG 0.550556 3_4:-47063832 None:intergenic
TCTATCCTCCCATGCAGGAA+GGG 0.550690 3_4:-47066503 None:intergenic
GGTGAATGAGCACCTTACCT+TGG 0.554858 3_4:+47066563 Msa0503630:three_prime_UTR
CAGCATCTATCCTCCCATGC+AGG 0.556616 3_4:-47066508 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3_4:+47066140 Msa0503630:CDS
TGAGCCATCTCAAGGGGCAA+AGG 0.560137 3_4:-47064650 None:intergenic
CTGCCAAGATAACCAAGGTA+AGG 0.560578 3_4:-47066575 None:intergenic
GGGAGGATAGATGCTGAGGT+TGG 0.566065 3_4:+47066515 Msa0503630:three_prime_UTR
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3_4:-47066283 None:intergenic
GATCCTCATTCCTTTCAGCC+CGG 0.568473 3_4:+47063686 Msa0503630:CDS
ATAAACACCACCGGGCTGAA+AGG 0.570819 3_4:-47063696 None:intergenic
TCAACTTCCGCTGATATGGA+TGG 0.571337 3_4:+47066775 Msa0503630:three_prime_UTR
ATGCACTTACCTGAGGAAGA+AGG 0.575777 3_4:-47062741 None:intergenic
TCACATACCAACGGCTGGTG+AGG 0.579630 3_4:-47064467 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3_4:+47066396 Msa0503630:CDS
GTGTTTATTCTGAACCTTGG+TGG 0.581264 3_4:+47063711 Msa0503630:CDS
AGGTTCAGAATAAACACCAC+CGG 0.582494 3_4:-47063705 None:intergenic
GGAAGATGATGATGCTGCTA+AGG 0.583652 3_4:+47063862 Msa0503630:CDS
TAATGTCACATACCAACGGC+TGG 0.588332 3_4:-47064472 None:intergenic
TATTCTGAACCTTGGTGGCG+TGG 0.589853 3_4:+47063716 Msa0503630:CDS
CTTCCGCTGATATGGATGGA+TGG 0.590906 3_4:+47066779 Msa0503630:three_prime_UTR
TGCAAAGAAAACTGATGGTG+AGG 0.591393 3_4:+47066186 Msa0503630:CDS
GGATCAAACGAAAATGGTGG+TGG 0.596004 3_4:+47066337 Msa0503630:CDS
GTGTGAATGATATAATATGG+GGG 0.597919 3_4:+47066644 Msa0503630:three_prime_UTR
ATGCAATCTTCAAGGTATCA+GGG 0.599536 3_4:+47066385 Msa0503630:CDS
GGAAATTACGGACAAGAACA+AGG 0.600249 3_4:+47064072 Msa0503630:intron
TTATCAGGATCCATATTATG+GGG 0.600718 3_4:+47064427 Msa0503630:CDS
TATCTTGGCAGTATATATGC+CGG 0.601362 3_4:+47066587 Msa0503630:three_prime_UTR
AGGTTCTTGAGCCATCTCAA+GGG 0.605218 3_4:-47064657 None:intergenic
CCTCATTCCTTTCAGCCCGG+TGG 0.605967 3_4:+47063689 Msa0503630:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3_4:+47066148 Msa0503630:CDS
ATCCTCCCATGCAGGAAGGG+GGG 0.608555 3_4:-47066500 None:intergenic
GGTTCTTGAGCCATCTCAAG+GGG 0.609159 3_4:-47064656 None:intergenic
TATCCTCCCATGCAGGAAGG+GGG 0.610586 3_4:-47066501 None:intergenic
GTCCAATAGTGAGATGAATG+AGG 0.611764 3_4:+47063841 Msa0503630:CDS
GGTGTGAATGATATAATATG+GGG 0.614073 3_4:+47066643 Msa0503630:three_prime_UTR
GATTCAGAATCCAATGAGGA+AGG 0.616324 3_4:+47063809 Msa0503630:CDS
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3_4:+47066141 Msa0503630:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3_4:+47066427 Msa0503630:CDS
TCCTACCATAACAACAACAA+TGG 0.624469 3_4:+47066361 Msa0503630:CDS
CGATTTGCAAAGAAAACTGA+TGG 0.624607 3_4:+47066181 Msa0503630:CDS
CCACCGGGCTGAAAGGAATG+AGG 0.626610 3_4:-47063689 None:intergenic
GGCAAAGGCATTCTGGCATG+AGG 0.634023 3_4:-47064635 None:intergenic
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3_4:+47066157 Msa0503630:CDS
TGTGAATGATATAATATGGG+GGG 0.639434 3_4:+47066645 Msa0503630:three_prime_UTR
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3_4:+47066405 Msa0503630:CDS
CCAGCTGAGGAGTCTGTGTG+AGG 0.649225 3_4:-47064137 None:intergenic
GGTTCAGAATAAACACCACC+GGG 0.650774 3_4:-47063704 None:intergenic
AACAATACCAAGGAATTCTG+AGG 0.651910 3_4:+47064696 Msa0503630:CDS
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3_4:-47066209 None:intergenic
ACCATTGGGACAATCAAGAG+AGG 0.663692 3_4:-47063786 None:intergenic
TGAGGCACTCCTATAAAAGG+AGG 0.667807 3_4:-47064617 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3_4:+47066447 Msa0503630:CDS
AAGGAATGAGGATCTGACCT+CGG 0.671701 3_4:-47063677 None:intergenic
GCATGGGAGGATAGATGCTG+AGG 0.673206 3_4:+47066511 Msa0503630:three_prime_UTR
TGACCAACAAGTTCCAGCTG+AGG 0.675734 3_4:-47064150 None:intergenic
TTGAAATTGAAAATTCAAAG+GGG 0.682647 3_4:-47062656 None:intergenic
GTGAATGATATAATATGGGG+GGG 0.684869 3_4:+47066646 Msa0503630:three_prime_UTR
TGACCATCCATCCATATCAG+CGG 0.689161 3_4:-47066782 None:intergenic
TATCAGGATCCATATTATGG+GGG 0.690554 3_4:+47064428 Msa0503630:CDS
CGAGGATCAAACGAAAATGG+TGG 0.690969 3_4:+47066334 Msa0503630:CDS
GTGAACGCTAAACAATACCA+AGG 0.697540 3_4:+47064686 Msa0503630:CDS
TATCCAACACCACGCCACCA+AGG 0.707510 3_4:-47063725 None:intergenic
TGGTGATTCAGAATCCAATG+AGG 0.715370 3_4:+47063805 Msa0503630:CDS
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3_4:+47066458 Msa0503630:CDS
ATATACTGCCAAGATAACCA+AGG 0.721400 3_4:-47066580 None:intergenic
CCGAAACTGCAAATCAACCG+AGG 0.722272 3_4:+47063660 Msa0503630:CDS
AACATGCGACAAGATGCACG+AGG 0.808154 3_4:+47066316 Msa0503630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAATA+TGG - chr3_4:47064582-47064601 None:intergenic 0.0%
!! TTATTTACTAACAATTAAAT+AGG + chr3_4:47063936-47063955 Msa0503630:intron 10.0%
!! TATTTACTAACAATTAAATA+GGG + chr3_4:47063937-47063956 Msa0503630:intron 10.0%
!!! TATAAATGTTTCTAATATAT+AGG + chr3_4:47064998-47065017 Msa0503630:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG - chr3_4:47065215-47065234 None:intergenic 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG - chr3_4:47065216-47065235 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr3_4:47065277-47065296 None:intergenic 10.0%
!!! TTTACATTTTTTTTTTTTGA+AGG - chr3_4:47065697-47065716 None:intergenic 10.0%
!! ATTGAAATTGAAAATTCAAA+GGG - chr3_4:47062660-47062679 None:intergenic 15.0%
!! AATTGAAATTGAAAATTCAA+AGG - chr3_4:47062661-47062680 None:intergenic 15.0%
!! CATAAGGAATAAAAAAATTT+CGG - chr3_4:47063105-47063124 None:intergenic 15.0%
!!! TGTAGGTTTTTTTATTTTTT+AGG + chr3_4:47063363-47063382 Msa0503630:intron 15.0%
!! AAGTATATAAAAGTTAACAT+GGG + chr3_4:47063451-47063470 Msa0503630:intron 15.0%
!! ATTTACTAACAATTAAATAG+GGG + chr3_4:47063938-47063957 Msa0503630:intron 15.0%
!!! ATTTTTTTTTTCTTCTTGAT+AGG + chr3_4:47064051-47064070 Msa0503630:intron 15.0%
!! AAAAAATAACAATAAAGCTT+AGG - chr3_4:47064194-47064213 None:intergenic 15.0%
!! TTGTTTACTTAATTAGAATT+AGG + chr3_4:47065111-47065130 Msa0503630:intron 15.0%
!! TGTTTACTTAATTAGAATTA+GGG + chr3_4:47065112-47065131 Msa0503630:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr3_4:47065186-47065205 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr3_4:47065248-47065267 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr3_4:47065249-47065268 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr3_4:47065408-47065427 Msa0503630:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr3_4:47065527-47065546 Msa0503630:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr3_4:47065599-47065618 Msa0503630:intron 15.0%
!!! ATGTTTTTACATAATTCTAA+GGG - chr3_4:47065673-47065692 None:intergenic 15.0%
!!! AATGTTTTTACATAATTCTA+AGG - chr3_4:47065674-47065693 None:intergenic 15.0%
!! TTGAAATTGAAAATTCAAAG+GGG - chr3_4:47062659-47062678 None:intergenic 20.0%
!!! TTTTTTTCAATACGAAAAAG+AGG + chr3_4:47062956-47062975 Msa0503630:intron 20.0%
!!! TTTTTTAGGAATATAGTTGT+AGG + chr3_4:47063377-47063396 Msa0503630:intron 20.0%
!! AGATTTACAACTCTAATATA+TGG + chr3_4:47063426-47063445 Msa0503630:intron 20.0%
!! CAAGTATATAAAAGTTAACA+TGG + chr3_4:47063450-47063469 Msa0503630:intron 20.0%
!!! ACTATACTTGTAATTTTTGT+AGG + chr3_4:47063613-47063632 Msa0503630:intron 20.0%
!!! CTATACTTGTAATTTTTGTA+GGG + chr3_4:47063614-47063633 Msa0503630:intron 20.0%
!!! ACCAAATACTATTGATTTAA+AGG + chr3_4:47064014-47064033 Msa0503630:intron 20.0%
!!! TCAAATCAGTAATTTTATTC+TGG + chr3_4:47064264-47064283 Msa0503630:intron 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG - chr3_4:47064524-47064543 None:intergenic 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG + chr3_4:47064527-47064546 Msa0503630:intron 20.0%
!! TCTTGATTAATGGTAATATT+TGG + chr3_4:47064537-47064556 Msa0503630:intron 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG + chr3_4:47064827-47064846 Msa0503630:intron 20.0%
!! ACTGCTTAAAAAAAAATCAA+AGG - chr3_4:47065038-47065057 None:intergenic 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG + chr3_4:47065128-47065147 Msa0503630:intron 20.0%
!!! AATTTTTGCGAGATTTTTTT+CGG + chr3_4:47065443-47065462 Msa0503630:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - chr3_4:47065497-47065516 None:intergenic 20.0%
!! CATCTAATTTAATGTTTAGA+TGG + chr3_4:47065761-47065780 Msa0503630:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG + chr3_4:47065941-47065960 Msa0503630:intron 20.0%
!!! TTACTACATAAACTTTTTGT+GGG + chr3_4:47065942-47065961 Msa0503630:intron 20.0%
! ATCATAAGACTCAAAAATCT+AGG + chr3_4:47062708-47062727 Msa0503630:five_prime_UTR 25.0%
! TCATAAGACTCAAAAATCTA+GGG + chr3_4:47062709-47062728 Msa0503630:five_prime_UTR 25.0%
! TTGTAACTCTTGATTGAATA+AGG + chr3_4:47063479-47063498 Msa0503630:intron 25.0%
! GCCTTTAAATCAATAGTATT+TGG - chr3_4:47064018-47064037 None:intergenic 25.0%
! TTCTTCTTGATAGGAAATTA+CGG + chr3_4:47064060-47064079 Msa0503630:intron 25.0%
! ATTCGTGCATATAATTTCAA+TGG + chr3_4:47064304-47064323 Msa0503630:intron 25.0%
! AAAAGAATTGGAAGAATACT+AGG - chr3_4:47064383-47064402 None:intergenic 25.0%
!! TATGATATTTTCCTTTCCTT+TGG + chr3_4:47064805-47064824 Msa0503630:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG + chr3_4:47064806-47064825 Msa0503630:intron 25.0%
! AAAAAAGACAAATATCCCAA+AGG - chr3_4:47064824-47064843 None:intergenic 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG + chr3_4:47064834-47064853 Msa0503630:intron 25.0%
! AAAAAAAATCAAAGGCTCTA+TGG - chr3_4:47065030-47065049 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr3_4:47065473-47065492 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr3_4:47065538-47065557 Msa0503630:intron 25.0%
! GTATATCCTAGTGATATATT+TGG + chr3_4:47066542-47066561 Msa0503630:three_prime_UTR 25.0%
! ATGGTGTGAATGATATAATA+TGG + chr3_4:47066641-47066660 Msa0503630:three_prime_UTR 25.0%
! TGGTGTGAATGATATAATAT+GGG + chr3_4:47066642-47066661 Msa0503630:three_prime_UTR 25.0%
! CAAAAATGAGAAAAGATTGA+AGG - chr3_4:47066729-47066748 None:intergenic 25.0%
! TCGTTTTCTGATGCTTATTA+GGG + chr3_4:47062808-47062827 Msa0503630:intron 30.0%
AATCACAGAATTGTTTGACT+CGG - chr3_4:47062881-47062900 None:intergenic 30.0%
TAGGTGAAAGGTAGAAAATT+GGG + chr3_4:47063011-47063030 Msa0503630:intron 30.0%
ACAGAATCACATGAAACATA+AGG - chr3_4:47063121-47063140 None:intergenic 30.0%
!!! ACAACTTTTCAGGTCATATT+TGG - chr3_4:47063148-47063167 None:intergenic 30.0%
AAATATGACCTGAAAAGTTG+TGG + chr3_4:47063147-47063166 Msa0503630:intron 30.0%
TACAACTATAACCAAGTGAT+TGG - chr3_4:47063347-47063366 None:intergenic 30.0%
AATCACTTGGTTATAGTTGT+AGG + chr3_4:47063346-47063365 Msa0503630:intron 30.0%
GATCATAATCAATTTCACTG+TGG + chr3_4:47063523-47063542 Msa0503630:intron 30.0%
! CCAGTTTTCTTTTAGCATAA+GGG + chr3_4:47063573-47063592 Msa0503630:intron 30.0%
TAGGGGAAAAATAAACAGAT+TGG + chr3_4:47063955-47063974 Msa0503630:intron 30.0%
TAACAATAAAGCTTAGGCAA+AGG - chr3_4:47064188-47064207 None:intergenic 30.0%
CTTAACAACTTGAAAGCAAT+TGG - chr3_4:47064224-47064243 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG + chr3_4:47064426-47064445 Msa0503630:CDS 30.0%
TTATCAGGATCCATATTATG+GGG + chr3_4:47064427-47064446 Msa0503630:CDS 30.0%
AGATTAATGTCACATACCAA+CGG - chr3_4:47064479-47064498 None:intergenic 30.0%
! TTAATCTGTTACTTGCTTCA+AGG + chr3_4:47064492-47064511 Msa0503630:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG + chr3_4:47064754-47064773 Msa0503630:CDS 30.0%
GTCGTATGAAATTGTGTAAA+AGG - chr3_4:47064870-47064889 None:intergenic 30.0%
TATAAAGACTAAGCAAGCAA+CGG - chr3_4:47064892-47064911 None:intergenic 30.0%
! TTGCTTGCTTAGTCTTTATA+TGG + chr3_4:47064892-47064911 Msa0503630:intron 30.0%
CCATTATTATGCTGTATTGA+CGG + chr3_4:47065072-47065091 Msa0503630:intron 30.0%
!!! TGTTTTTGGTCCCTATAAAA+TGG + chr3_4:47065142-47065161 Msa0503630:intron 30.0%
AAGTAAGGACTAAACTTAGA+AGG - chr3_4:47065171-47065190 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr3_4:47065311-47065330 Msa0503630:intron 30.0%
!!! TGAGTGCAGAATTTTTTTGT+AGG + chr3_4:47065569-47065588 Msa0503630:intron 30.0%
!!! GAGTGCAGAATTTTTTTGTA+GGG + chr3_4:47065570-47065589 Msa0503630:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr3_4:47065614-47065633 Msa0503630:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG - chr3_4:47065741-47065760 None:intergenic 30.0%
TATTCTTGTCTGCAAGAATT+AGG + chr3_4:47065820-47065839 Msa0503630:intron 30.0%
TGCACAAATGTCAAGAAAAA+TGG + chr3_4:47065891-47065910 Msa0503630:intron 30.0%
TGTCTAGATTCATGAAGATA+TGG - chr3_4:47066124-47066143 None:intergenic 30.0%
CATTCACCAAATATATCACT+AGG - chr3_4:47066551-47066570 None:intergenic 30.0%
GGTGTGAATGATATAATATG+GGG + chr3_4:47066643-47066662 Msa0503630:three_prime_UTR 30.0%
GTGTGAATGATATAATATGG+GGG + chr3_4:47066644-47066663 Msa0503630:three_prime_UTR 30.0%
TGTGAATGATATAATATGGG+GGG + chr3_4:47066645-47066664 Msa0503630:three_prime_UTR 30.0%
!! CATTTTGTACAGAGTTTTAG+TGG + chr3_4:47066749-47066768 Msa0503630:three_prime_UTR 30.0%
GTTTGTTCTGTAAACTTAAC+TGG + chr3_4:47066862-47066881 Msa0503630:three_prime_UTR 30.0%
!!! TTCTTTTTTCCTTCTTCCTC+AGG + chr3_4:47062732-47062751 Msa0503630:five_prime_UTR 35.0%
!! GTCGTTTTCTGATGCTTATT+AGG + chr3_4:47062807-47062826 Msa0503630:intron 35.0%
TCTGATGCTTATTAGGGATT+AGG + chr3_4:47062814-47062833 Msa0503630:intron 35.0%
CTGATGCTTATTAGGGATTA+GGG + chr3_4:47062815-47062834 Msa0503630:intron 35.0%
! AGGGTTTTCGTGATGAATTT+TGG + chr3_4:47062834-47062853 Msa0503630:intron 35.0%
! GGGTTTTCGTGATGAATTTT+GGG + chr3_4:47062835-47062854 Msa0503630:intron 35.0%
GTTCTGTGTGAATTCTTGTT+TGG + chr3_4:47062910-47062929 Msa0503630:intron 35.0%
CTAGGTTTGATTGTGAATGT+AGG + chr3_4:47062992-47063011 Msa0503630:intron 35.0%
TGATTGTGAATGTAGGTGAA+AGG + chr3_4:47062999-47063018 Msa0503630:intron 35.0%
GTAGGTGAAAGGTAGAAAAT+TGG + chr3_4:47063010-47063029 Msa0503630:intron 35.0%
TCTGTTAAACAGAGCTTCAT+AGG + chr3_4:47063060-47063079 Msa0503630:intron 35.0%
! TGTTACAGTTTTTGTTCCTC+CGG + chr3_4:47063175-47063194 Msa0503630:intron 35.0%
AGACTTTACTTACCAATCAG+CGG - chr3_4:47063233-47063252 None:intergenic 35.0%
TTCCACCTAGAAATCAAACT+CGG + chr3_4:47063272-47063291 Msa0503630:intron 35.0%
CTTCCAAACAATTCGTCTTT+AGG + chr3_4:47063298-47063317 Msa0503630:intron 35.0%
CTACCTAAAGACGAATTGTT+TGG - chr3_4:47063304-47063323 None:intergenic 35.0%
! GCCAGTTTTCTTTTAGCATA+AGG + chr3_4:47063572-47063591 Msa0503630:intron 35.0%
CCCTTATGCTAAAAGAAAAC+TGG - chr3_4:47063576-47063595 None:intergenic 35.0%
! GTAATTTTTGTAGGGATCTG+AGG + chr3_4:47063622-47063641 Msa0503630:intron 35.0%
ACAATCAAGAGAGGATGAAT+TGG - chr3_4:47063780-47063799 None:intergenic 35.0%
TTGGATTCTGAATCACCATT+GGG - chr3_4:47063803-47063822 None:intergenic 35.0%
ATTGGATTCTGAATCACCAT+TGG - chr3_4:47063804-47063823 None:intergenic 35.0%
TTCCTCATTCATCTCACTAT+TGG - chr3_4:47063846-47063865 None:intergenic 35.0%
! TCTAAAGCACCTGATTGATT+GGG - chr3_4:47063905-47063924 None:intergenic 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG - chr3_4:47063906-47063925 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG + chr3_4:47064388-47064407 Msa0503630:intron 35.0%
ATGTGCTACAAATCCTTATC+AGG + chr3_4:47064412-47064431 Msa0503630:CDS 35.0%
CCATAATATGGATCCTGATA+AGG - chr3_4:47064428-47064447 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG + chr3_4:47064425-47064444 Msa0503630:CDS 35.0%
TATCAGGATCCATATTATGG+GGG + chr3_4:47064428-47064447 Msa0503630:CDS 35.0%
! TAGGGATATCCTCCTTTTAT+AGG + chr3_4:47064608-47064627 Msa0503630:intron 35.0%
TGTTTAGCGTTCACATAAAC+AGG - chr3_4:47064680-47064699 None:intergenic 35.0%
AACAATACCAAGGAATTCTG+AGG + chr3_4:47064696-47064715 Msa0503630:CDS 35.0%
AGACAAATATCCCAAAGGAA+AGG - chr3_4:47064819-47064838 None:intergenic 35.0%
CCGTCAATACAGCATAATAA+TGG - chr3_4:47065075-47065094 None:intergenic 35.0%
!! TAGAAGGTCGCCATTTTATA+GGG - chr3_4:47065155-47065174 None:intergenic 35.0%
!! TTAGAAGGTCGCCATTTTAT+AGG - chr3_4:47065156-47065175 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr3_4:47065629-47065648 Msa0503630:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr3_4:47065630-47065649 Msa0503630:intron 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG - chr3_4:47065742-47065761 None:intergenic 35.0%
AAAAATAAGCTCTCAGATGC+AGG + chr3_4:47065848-47065867 Msa0503630:intron 35.0%
ACTACATACACTGGCAAAAT+TGG - chr3_4:47065975-47065994 None:intergenic 35.0%
ATGAATGTGACTACATACAC+TGG - chr3_4:47065984-47066003 None:intergenic 35.0%
GGACTCATGCAAGTAAAAAA+TGG - chr3_4:47066049-47066068 None:intergenic 35.0%
GTCTCACTTGAAACATATTC+TGG - chr3_4:47066070-47066089 None:intergenic 35.0%
CGATTTGCAAAGAAAACTGA+TGG + chr3_4:47066181-47066200 Msa0503630:CDS 35.0%
TCGCAATCAATTAGTTCATC+TGG + chr3_4:47066247-47066266 Msa0503630:CDS 35.0%
TCCTACCATAACAACAACAA+TGG + chr3_4:47066361-47066380 Msa0503630:CDS 35.0%
! ACCATTGTTGTTGTTATGGT+AGG - chr3_4:47066365-47066384 None:intergenic 35.0%
! GCATACCATTGTTGTTGTTA+TGG - chr3_4:47066369-47066388 None:intergenic 35.0%
ACAATGGTATGCAATCTTCA+AGG + chr3_4:47066377-47066396 Msa0503630:CDS 35.0%
! TATGCAATCTTCAAGGTATC+AGG + chr3_4:47066384-47066403 Msa0503630:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG + chr3_4:47066385-47066404 Msa0503630:CDS 35.0%
ATATACTGCCAAGATAACCA+AGG - chr3_4:47066583-47066602 None:intergenic 35.0%
TATCTTGGCAGTATATATGC+CGG + chr3_4:47066587-47066606 Msa0503630:three_prime_UTR 35.0%
! AAAAGCCAAGAATGATTTGC+CGG - chr3_4:47066609-47066628 None:intergenic 35.0%
! GGCTTTTGTTCTTCTGTTAA+TGG + chr3_4:47066622-47066641 Msa0503630:three_prime_UTR 35.0%
GTGAATGATATAATATGGGG+GGG + chr3_4:47066646-47066665 Msa0503630:three_prime_UTR 35.0%
! TACCAAACTCTCTTGTTTCT+TGG + chr3_4:47066839-47066858 Msa0503630:three_prime_UTR 35.0%
! ACCAAACTCTCTTGTTTCTT+GGG + chr3_4:47066840-47066859 Msa0503630:three_prime_UTR 35.0%
GTTCTGTAAACTTAACTGGT+TGG + chr3_4:47066866-47066885 Msa0503630:three_prime_UTR 35.0%
AAAGAGAGAGAGAAAGAGAG+AGG + chr3_4:47062616-47062635 Msa0503630:five_prime_UTR 40.0%
AAGAGAGAGAGAAAGAGAGA+GGG + chr3_4:47062617-47062636 Msa0503630:five_prime_UTR 40.0%
!! AGAATTGTTTGACTCGGACT+CGG - chr3_4:47062875-47062894 None:intergenic 40.0%
! AGAGGATTTTTCTCTGAGCT+AGG + chr3_4:47062974-47062993 Msa0503630:intron 40.0%
AGAGCTTCATAGGTAGTGTA+CGG + chr3_4:47063070-47063089 Msa0503630:intron 40.0%
! ACACTATGCCACAACTTTTC+AGG - chr3_4:47063158-47063177 None:intergenic 40.0%
! TTTTTGTTCCTCCGGTTCTT+AGG + chr3_4:47063183-47063202 Msa0503630:intron 40.0%
GCTGATTGGTAAGTAAAGTC+TGG + chr3_4:47063232-47063251 Msa0503630:intron 40.0%
TCCACCTAGAAATCAAACTC+GGG + chr3_4:47063273-47063292 Msa0503630:intron 40.0%
! AGAACCCGAGTTTGATTTCT+AGG - chr3_4:47063280-47063299 None:intergenic 40.0%
!! CTGTGGATTACTGCATTTTG+TGG + chr3_4:47063540-47063559 Msa0503630:intron 40.0%
!! TTGATTTGCAGTTTCGGACT+TGG - chr3_4:47063657-47063676 None:intergenic 40.0%
AGGTTCAGAATAAACACCAC+CGG - chr3_4:47063708-47063727 None:intergenic 40.0%
GTGGTGTTTATTCTGAACCT+TGG + chr3_4:47063708-47063727 Msa0503630:CDS 40.0%
GTGTTTATTCTGAACCTTGG+TGG + chr3_4:47063711-47063730 Msa0503630:CDS 40.0%
TGGTGATTCAGAATCCAATG+AGG + chr3_4:47063805-47063824 Msa0503630:CDS 40.0%
GATTCAGAATCCAATGAGGA+AGG + chr3_4:47063809-47063828 Msa0503630:CDS 40.0%
TCTCACTATTGGACAAAGAC+TGG - chr3_4:47063835-47063854 None:intergenic 40.0%
GTCCAATAGTGAGATGAATG+AGG + chr3_4:47063841-47063860 Msa0503630:CDS 40.0%
GGAAATTACGGACAAGAACA+AGG + chr3_4:47064072-47064091 Msa0503630:intron 40.0%
AGCTTGTAGTTGCATGCATT+TGG + chr3_4:47064344-47064363 Msa0503630:intron 40.0%
CATGCCTGCATCAAAAGAAT+TGG - chr3_4:47064395-47064414 None:intergenic 40.0%
GTGAACGCTAAACAATACCA+AGG + chr3_4:47064686-47064705 Msa0503630:CDS 40.0%
TATATGCGCTGTTGTCTGTA+AGG + chr3_4:47064969-47064988 Msa0503630:intron 40.0%
TGTTTAGATGGATCTGCTGT+TGG + chr3_4:47065773-47065792 Msa0503630:intron 40.0%
ATACACTGGCAAAATTGGAG+TGG - chr3_4:47065970-47065989 None:intergenic 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG + chr3_4:47066141-47066160 Msa0503630:CDS 40.0%
TTTCTTTGCAAATCGTCCTC+CGG - chr3_4:47066176-47066195 None:intergenic 40.0%
! TGCAAAGAAAACTGATGGTG+AGG + chr3_4:47066186-47066205 Msa0503630:CDS 40.0%
ATATGCCGGCAAATCATTCT+TGG + chr3_4:47066601-47066620 Msa0503630:three_prime_UTR 40.0%
ACCCAAGAAACAAGAGAGTT+TGG - chr3_4:47066844-47066863 None:intergenic 40.0%
ATGCACTTACCTGAGGAAGA+AGG - chr3_4:47062744-47062763 None:intergenic 45.0%
! ACCCGAGTTTGATTTCTAGG+TGG - chr3_4:47063277-47063296 None:intergenic 45.0%
ACCAAGTGATTGGACTCAAG+TGG - chr3_4:47063337-47063356 None:intergenic 45.0%
! CTGCATTTTGTGGCTGTGAT+TGG + chr3_4:47063550-47063569 Msa0503630:intron 45.0%
!! CCTCGGTTGATTTGCAGTTT+CGG - chr3_4:47063663-47063682 None:intergenic 45.0%
AAGGAATGAGGATCTGACCT+CGG - chr3_4:47063680-47063699 None:intergenic 45.0%
GGTTCAGAATAAACACCACC+GGG - chr3_4:47063707-47063726 None:intergenic 45.0%
TCCTCTCTTGATTGTCCCAA+TGG + chr3_4:47063785-47063804 Msa0503630:CDS 45.0%
ACCATTGGGACAATCAAGAG+AGG - chr3_4:47063789-47063808 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG + chr3_4:47063862-47063881 Msa0503630:CDS 45.0%
GTAGTTGCATGCATTTGGAC+TGG + chr3_4:47064349-47064368 Msa0503630:intron 45.0%
! TTGCATGCATTTGGACTGGA+TGG + chr3_4:47064353-47064372 Msa0503630:intron 45.0%
! TGCATGCATTTGGACTGGAT+GGG + chr3_4:47064354-47064373 Msa0503630:intron 45.0%
! TCCATATTATGGGGGCATGA+TGG + chr3_4:47064436-47064455 Msa0503630:CDS 45.0%
TAATGTCACATACCAACGGC+TGG - chr3_4:47064475-47064494 None:intergenic 45.0%
! TGAGGCACTCCTATAAAAGG+AGG - chr3_4:47064620-47064639 None:intergenic 45.0%
! GCATGAGGCACTCCTATAAA+AGG - chr3_4:47064623-47064642 None:intergenic 45.0%
AGGTTCTTGAGCCATCTCAA+GGG - chr3_4:47064660-47064679 None:intergenic 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG + chr3_4:47064732-47064751 Msa0503630:CDS 45.0%
TTAGATGGATCTGCTGTTGG+AGG + chr3_4:47065776-47065795 Msa0503630:intron 45.0%
!! GACATCAGCATGCTTTGAGA+AGG + chr3_4:47066140-47066159 Msa0503630:CDS 45.0%
ATTGATTGCGACGACAAGAC+TGG - chr3_4:47066238-47066257 None:intergenic 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG + chr3_4:47066276-47066295 Msa0503630:CDS 45.0%
GCACGAGGATCAAACGAAAA+TGG + chr3_4:47066331-47066350 Msa0503630:CDS 45.0%
CGAGGATCAAACGAAAATGG+TGG + chr3_4:47066334-47066353 Msa0503630:CDS 45.0%
GGATCAAACGAAAATGGTGG+TGG + chr3_4:47066337-47066356 Msa0503630:CDS 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG + chr3_4:47066396-47066415 Msa0503630:CDS 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG + chr3_4:47066404-47066423 Msa0503630:CDS 45.0%
GCACCTTACCTTGGTTATCT+TGG + chr3_4:47066572-47066591 Msa0503630:three_prime_UTR 45.0%
CTGCCAAGATAACCAAGGTA+AGG - chr3_4:47066578-47066597 None:intergenic 45.0%
TAATATGGGGGGGAGAAGAA+TGG + chr3_4:47066656-47066675 Msa0503630:three_prime_UTR 45.0%
GTAGTCAACTTCCGCTGATA+TGG + chr3_4:47066771-47066790 Msa0503630:three_prime_UTR 45.0%
TCAACTTCCGCTGATATGGA+TGG + chr3_4:47066775-47066794 Msa0503630:three_prime_UTR 45.0%
TGACCATCCATCCATATCAG+CGG - chr3_4:47066785-47066804 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTACTATT+AGG + chr3_4:47064589-47064608 Msa0503630:intron 5.0%
!!! TTTTTTTTTTTTTACTATTA+GGG + chr3_4:47064590-47064609 Msa0503630:intron 5.0%
TCGAAGCATGCACTTACCTG+AGG - chr3_4:47062751-47062770 None:intergenic 50.0%
TTCCTCCGGTTCTTAGGAGA+AGG + chr3_4:47063189-47063208 Msa0503630:intron 50.0%
TCCTCCGGTTCTTAGGAGAA+GGG + chr3_4:47063190-47063209 Msa0503630:intron 50.0%
TCAGCGGAACTCCAGATTGA+GGG - chr3_4:47063217-47063236 None:intergenic 50.0%
ATCAGCGGAACTCCAGATTG+AGG - chr3_4:47063218-47063237 None:intergenic 50.0%
! CAATCTGGAGTTCCGCTGAT+TGG + chr3_4:47063218-47063237 Msa0503630:intron 50.0%
GCCACTTGAGTCCAATCACT+TGG + chr3_4:47063333-47063352 Msa0503630:intron 50.0%
CCGAAACTGCAAATCAACCG+AGG + chr3_4:47063660-47063679 Msa0503630:CDS 50.0%
GATCCTCATTCCTTTCAGCC+CGG + chr3_4:47063686-47063705 Msa0503630:CDS 50.0%
ATAAACACCACCGGGCTGAA+AGG - chr3_4:47063699-47063718 None:intergenic 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG + chr3_4:47063716-47063735 Msa0503630:CDS 50.0%
CCAGACATTGTTTGCGCTAC+AGG - chr3_4:47063755-47063774 None:intergenic 50.0%
CCTGTAGCGCAAACAATGTC+TGG + chr3_4:47063752-47063771 Msa0503630:CDS 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG - chr3_4:47063822-47063841 None:intergenic 50.0%
ACTCCTCAGCTGGAACTTGT+TGG + chr3_4:47064147-47064166 Msa0503630:CDS 50.0%
TGACCAACAAGTTCCAGCTG+AGG - chr3_4:47064153-47064172 None:intergenic 50.0%
GCCATCATGCCCCCATAATA+TGG - chr3_4:47064440-47064459 None:intergenic 50.0%
AATGCCTTTGCCCCTTGAGA+TGG + chr3_4:47064646-47064665 Msa0503630:CDS 50.0%
GGTTCTTGAGCCATCTCAAG+GGG - chr3_4:47064659-47064678 None:intergenic 50.0%
CAGGTTCTTGAGCCATCTCA+AGG - chr3_4:47064661-47064680 None:intergenic 50.0%
GTCTTCGCCTCAGAATTCCT+TGG - chr3_4:47064706-47064725 None:intergenic 50.0%
TGGAGGCTCAAGGAAGTTAG+AGG + chr3_4:47065793-47065812 Msa0503630:intron 50.0%
AAGCTCTCAGATGCAGGTAG+TGG + chr3_4:47065854-47065873 Msa0503630:intron 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG + chr3_4:47066148-47066167 Msa0503630:CDS 50.0%
! GAAAACTGATGGTGAGGCCT+CGG + chr3_4:47066192-47066211 Msa0503630:CDS 50.0%
! AAAACTGATGGTGAGGCCTC+GGG + chr3_4:47066193-47066212 Msa0503630:CDS 50.0%
AGAGCCATTATCCTTTCCCG+AGG - chr3_4:47066212-47066231 None:intergenic 50.0%
! TCGGGAAAGGATAATGGCTC+TGG + chr3_4:47066211-47066230 Msa0503630:CDS 50.0%
TCGCATGTTGGGAGAATTCC+AGG - chr3_4:47066305-47066324 None:intergenic 50.0%
CGTGCATCTTGTCGCATGTT+GGG - chr3_4:47066316-47066335 None:intergenic 50.0%
TCGTGCATCTTGTCGCATGT+TGG - chr3_4:47066317-47066336 None:intergenic 50.0%
AACATGCGACAAGATGCACG+AGG + chr3_4:47066316-47066335 Msa0503630:CDS 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG + chr3_4:47066403-47066422 Msa0503630:CDS 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG + chr3_4:47066405-47066424 Msa0503630:CDS 50.0%
TGGAAGAAGGGGACTGTTCA+GGG + chr3_4:47066416-47066435 Msa0503630:CDS 50.0%
TCTATCCTCCCATGCAGGAA+GGG - chr3_4:47066506-47066525 None:intergenic 50.0%
ATCTATCCTCCCATGCAGGA+AGG - chr3_4:47066507-47066526 None:intergenic 50.0%
GGTGAATGAGCACCTTACCT+TGG + chr3_4:47066563-47066582 Msa0503630:three_prime_UTR 50.0%
GGGGGAGAAGAATGGTGATT+GGG + chr3_4:47066664-47066683 Msa0503630:three_prime_UTR 50.0%
GGGGAGAAGAATGGTGATTG+GGG + chr3_4:47066665-47066684 Msa0503630:three_prime_UTR 50.0%
CTTCCGCTGATATGGATGGA+TGG + chr3_4:47066779-47066798 Msa0503630:three_prime_UTR 50.0%
GCTGATATGGATGGATGGTC+AGG + chr3_4:47066784-47066803 Msa0503630:three_prime_UTR 50.0%
CCTCCGGTTCTTAGGAGAAG+GGG + chr3_4:47063191-47063210 Msa0503630:intron 55.0%
TATCCAACACCACGCCACCA+AGG - chr3_4:47063728-47063747 None:intergenic 55.0%
CCTGATTGATTGGGAGCAGC+AGG - chr3_4:47063896-47063915 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG + chr3_4:47063893-47063912 Msa0503630:CDS 55.0%
AGCTTATCCTCACCAGCCGT+TGG + chr3_4:47064460-47064479 Msa0503630:CDS 55.0%
TCACATACCAACGGCTGGTG+AGG - chr3_4:47064470-47064489 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG - chr3_4:47064638-47064657 None:intergenic 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG - chr3_4:47064645-47064664 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG - chr3_4:47064653-47064672 None:intergenic 55.0%
GATCTGCTGTTGGAGGCTCA+AGG + chr3_4:47065783-47065802 Msa0503630:intron 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG + chr3_4:47066154-47066173 Msa0503630:CDS 55.0%
GAGGCCTCGGGAAAGGATAA+TGG + chr3_4:47066205-47066224 Msa0503630:CDS 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG - chr3_4:47066286-47066305 None:intergenic 55.0%
CTTCAGACTCTGCGGAAACC+TGG + chr3_4:47066284-47066303 Msa0503630:CDS 55.0%
GTGGAAGAAGGGGACTGTTC+AGG + chr3_4:47066415-47066434 Msa0503630:CDS 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG + chr3_4:47066447-47066466 Msa0503630:CDS 55.0%
TATCCTCCCATGCAGGAAGG+GGG - chr3_4:47066504-47066523 None:intergenic 55.0%
CTATCCTCCCATGCAGGAAG+GGG - chr3_4:47066505-47066524 None:intergenic 55.0%
CAGCATCTATCCTCCCATGC+AGG - chr3_4:47066511-47066530 None:intergenic 55.0%
GCATGGGAGGATAGATGCTG+AGG + chr3_4:47066511-47066530 Msa0503630:three_prime_UTR 55.0%
GGGAGGATAGATGCTGAGGT+TGG + chr3_4:47066515-47066534 Msa0503630:three_prime_UTR 55.0%
GGGGGGAGAAGAATGGTGAT+TGG + chr3_4:47066663-47066682 Msa0503630:three_prime_UTR 55.0%
CCCCTTCTCCTAAGAACCGG+AGG - chr3_4:47063194-47063213 None:intergenic 60.0%
GGGCCCCTTCTCCTAAGAAC+CGG - chr3_4:47063197-47063216 None:intergenic 60.0%
AGGAGAAGGGGCCCTCAATC+TGG + chr3_4:47063203-47063222 Msa0503630:intron 60.0%
CCACCGGGCTGAAAGGAATG+AGG - chr3_4:47063692-47063711 None:intergenic 60.0%
CCTCATTCCTTTCAGCCCGG+TGG + chr3_4:47063689-47063708 Msa0503630:CDS 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG + chr3_4:47063722-47063741 Msa0503630:CDS 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG - chr3_4:47064140-47064159 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG + chr3_4:47064137-47064156 Msa0503630:CDS 60.0%
! TGATGGTGAGGCCTCGGGAA+AGG + chr3_4:47066198-47066217 Msa0503630:CDS 60.0%
GACTGTTCAGGGCAGCTACG+TGG + chr3_4:47066427-47066446 Msa0503630:CDS 60.0%
AGTAGACCCCCCTTCCTGCA+TGG + chr3_4:47066494-47066513 Msa0503630:exon 60.0%
GTAGACCCCCCTTCCTGCAT+GGG + chr3_4:47066495-47066514 Msa0503630:exon 60.0%
ATCCTCCCATGCAGGAAGGG+GGG - chr3_4:47066503-47066522 None:intergenic 60.0%
!! AGAAGGGCAAGAGGCACCGG+AGG + chr3_4:47066157-47066176 Msa0503630:CDS 65.0%
CCTCTGCGATGCCTCGTTCG+AGG - chr3_4:47066461-47066480 None:intergenic 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG + chr3_4:47066458-47066477 Msa0503630:CDS 65.0%
GACCCCCCTTCCTGCATGGG+AGG + chr3_4:47066498-47066517 Msa0503630:exon 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 47062554 47066970 47062554 ID=Msa0503630;Name=Msa0503630
chr3_4 mRNA 47062554 47066970 47062554 ID=Msa0503630-mRNA-1;Parent=Msa0503630;Name=Msa0503630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=212|1|1|1|1|1|6|472|329
chr3_4 exon 47062554 47062753 47062554 ID=Msa0503630-mRNA-1:exon:10031;Parent=Msa0503630-mRNA-1
chr3_4 exon 47063635 47063914 47063635 ID=Msa0503630-mRNA-1:exon:10032;Parent=Msa0503630-mRNA-1
chr3_4 exon 47064073 47064179 47064073 ID=Msa0503630-mRNA-1:exon:10033;Parent=Msa0503630-mRNA-1
chr3_4 exon 47064410 47064481 47064410 ID=Msa0503630-mRNA-1:exon:10034;Parent=Msa0503630-mRNA-1
chr3_4 exon 47064611 47064775 47064611 ID=Msa0503630-mRNA-1:exon:10035;Parent=Msa0503630-mRNA-1
chr3_4 exon 47066121 47066970 47066121 ID=Msa0503630-mRNA-1:exon:10036;Parent=Msa0503630-mRNA-1
chr3_4 five_prime_UTR 47062554 47062753 47062554 ID=Msa0503630-mRNA-1:five_prime_utr;Parent=Msa0503630-mRNA-1
chr3_4 five_prime_UTR 47063635 47063646 47063635 ID=Msa0503630-mRNA-1:five_prime_utr;Parent=Msa0503630-mRNA-1
chr3_4 CDS 47063647 47063914 47063647 ID=Msa0503630-mRNA-1:cds;Parent=Msa0503630-mRNA-1
chr3_4 CDS 47064073 47064179 47064073 ID=Msa0503630-mRNA-1:cds;Parent=Msa0503630-mRNA-1
chr3_4 CDS 47064410 47064481 47064410 ID=Msa0503630-mRNA-1:cds;Parent=Msa0503630-mRNA-1
chr3_4 CDS 47064611 47064775 47064611 ID=Msa0503630-mRNA-1:cds;Parent=Msa0503630-mRNA-1
chr3_4 CDS 47066121 47066498 47066121 ID=Msa0503630-mRNA-1:cds;Parent=Msa0503630-mRNA-1
chr3_4 three_prime_UTR 47066499 47066970 47066499 ID=Msa0503630-mRNA-1:three_prime_utr;Parent=Msa0503630-mRNA-1
Gene Sequence

>Msa0503630

ATGCAATCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCACGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG
Protein sequence

>Msa0503630

MQSKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ*