AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808800 MtrunA17_Chr3g0125171 100.000 125 0 0 1 125 1 125 1.36e-85 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808800 AT1G77350.1 74.590 122 30 1 1 121 1 122 3.32e-60 181
Msa0808800 AT1G77350.2 74.590 122 30 1 1 121 1 122 3.32e-60 181

Find 44 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAGGCCATGGCGGGGTC+TGG 0.282341 5_3:+33853767 Msa0808800:intron
GTACTATTTCATGGGTAAAT+TGG 0.321848 5_3:+33852540 None:intergenic
CTATTTGGTGTACTATTTCA+TGG 0.329036 5_3:+33852531 None:intergenic
CAGTTAGGAGCACAAGAAAT+AGG 0.332990 5_3:-33853910 None:intergenic
AGAAGGCCATGGCGGGGTCT+GGG 0.375513 5_3:+33853768 Msa0808800:intron
CATCTTGTGAATCTTGAGTT+AGG 0.382414 5_3:+33852669 Msa0808800:five_prime_UTR
ATCTTATAAGTTATGATACT+AGG 0.383609 5_3:-33855946 None:intergenic
GAGACAGCCGGTGCAAAATC+TGG 0.384994 5_3:+33854587 Msa0808800:CDS
TGAATGCAGTTTCCTGTTCT+CGG 0.393893 5_3:+33855768 Msa0808800:intron
GCAAAATCTGGCTGGGGTGC+TGG 0.425345 5_3:+33854599 Msa0808800:CDS
TCGGAATTATTCACAATACT+TGG 0.430748 5_3:+33853869 Msa0808800:CDS
TGCTATGAGAAGGCCATGGC+GGG 0.435900 5_3:+33853761 Msa0808800:intron
CTCGGCTGTGTTGCTCTATG+AGG 0.447834 5_3:+33855786 Msa0808800:CDS
AGAGCAACACAGCCGAGAAC+AGG 0.475210 5_3:-33855780 None:intergenic
AGCCGGTGCAAAATCTGGCT+GGG 0.475968 5_3:+33854592 Msa0808800:CDS
CAGCCGGTGCAAAATCTGGC+TGG 0.479798 5_3:+33854591 Msa0808800:CDS
TATTTGGTGTACTATTTCAT+GGG 0.483287 5_3:+33852532 None:intergenic
TTGTAAAACTATTGCGACTA+GGG 0.496217 5_3:-33855922 None:intergenic
GATGACAATGAATAGAAGAA+AGG 0.500365 5_3:-33853807 None:intergenic
CGAATACCCAAGGGCAATCT+CGG 0.501828 5_3:-33852589 None:intergenic
TATGAGGTTAACAAGCTCTC+TGG 0.505681 5_3:+33855802 Msa0808800:CDS
TTAAATACCGAGATTGCCCT+TGG 0.510093 5_3:+33852582 Msa0808800:five_prime_UTR
TAGAAGAAAGGAATACATCA+TGG 0.524516 5_3:-33853795 None:intergenic
TCTTATAAGTTATGATACTA+GGG 0.531858 5_3:-33855945 None:intergenic
GAATTATTCACAATACTTGG+AGG 0.534232 5_3:+33853872 Msa0808800:CDS
AATTATTCACAATACTTGGA+GGG 0.538766 5_3:+33853873 Msa0808800:CDS
ACCATGTAGTGATGCATACT+CGG 0.544399 5_3:-33854904 None:intergenic
GTTTCTACGGCGAATACCCA+AGG 0.549681 5_3:-33852599 None:intergenic
GCCGGTGCAAAATCTGGCTG+GGG 0.558097 5_3:+33854593 Msa0808800:CDS
CCGTGGGAAACTTGCATCGT+CGG 0.565118 5_3:+33853850 Msa0808800:CDS
TAAATACCGAGATTGCCCTT+GGG 0.585124 5_3:+33852583 Msa0808800:five_prime_UTR
CACTTCAAGAAATGTACCGT+GGG 0.587600 5_3:+33853834 Msa0808800:CDS
ACCGAGTATGCATCACTACA+TGG 0.601750 5_3:+33854903 Msa0808800:CDS
GTTGTAAAACTATTGCGACT+AGG 0.603827 5_3:-33855923 None:intergenic
GGAACTCCCAGACCCCGCCA+TGG 0.620572 5_3:-33853774 None:intergenic
TTGCTATGAGAAGGCCATGG+CGG 0.626779 5_3:+33853760 Msa0808800:intron
GTAGAAACTAAAACGTGTGA+AGG 0.632281 5_3:+33852614 Msa0808800:five_prime_UTR
GGTACATTTCTTGAAGTGAG+AGG 0.637005 5_3:-33853829 None:intergenic
GCTATGAGAAGGCCATGGCG+GGG 0.660761 5_3:+33853762 Msa0808800:intron
CCGACGATGCAAGTTTCCCA+CGG 0.661665 5_3:-33853850 None:intergenic
GGAGTCACTTGTTGAAACAG+CGG 0.662603 5_3:-33855827 None:intergenic
TTTCTACGGCGAATACCCAA+GGG 0.663067 5_3:-33852598 None:intergenic
TCACTTCAAGAAATGTACCG+TGG 0.674064 5_3:+33853833 Msa0808800:CDS
ATGTAGTGATGCATACTCGG+TGG 0.725698 5_3:-33854901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAGATGTTATATAAA+TGG - chr5_3:33854102-33854121 None:intergenic 10.0%
!!! ACTTAATTTTACAATTATAT+TGG + chr5_3:33855992-33856011 Msa0808800:three_prime_UTR 10.0%
!!! TGTTTATTTTTTGTTTTCTT+TGG + chr5_3:33852957-33852976 Msa0808800:intron 15.0%
!!! GTTTATTTTTTGTTTTCTTT+GGG + chr5_3:33852958-33852977 Msa0808800:intron 15.0%
!!! TTTATTTTTTGTTTTCTTTG+GGG + chr5_3:33852959-33852978 Msa0808800:intron 15.0%
!!! TTTTAACTTGATTTTATCTT+TGG - chr5_3:33853119-33853138 None:intergenic 15.0%
!!! TTACTTTGTTATAACTAATA+AGG + chr5_3:33853634-33853653 Msa0808800:intron 15.0%
!!! TACTTTGTTATAACTAATAA+GGG + chr5_3:33853635-33853654 Msa0808800:intron 15.0%
!!! TATATATTTTTCATTTCTGA+AGG - chr5_3:33854070-33854089 None:intergenic 15.0%
!!! AACTATTTCTTAAAAAGAAA+AGG + chr5_3:33855004-33855023 Msa0808800:intron 15.0%
!!! ACTATTTCTTAAAAAGAAAA+GGG + chr5_3:33855005-33855024 Msa0808800:intron 15.0%
!! CAATGATACAATTAATTAAA+CGG + chr5_3:33855090-33855109 Msa0808800:intron 15.0%
!! AATGATACAATTAATTAAAC+GGG + chr5_3:33855091-33855110 Msa0808800:intron 15.0%
!!! TTTTCAATGTAATTTGTTAT+TGG - chr5_3:33855467-33855486 None:intergenic 15.0%
!!! TGATCTAGTAATTTGAAATT+AGG + chr5_3:33852833-33852852 Msa0808800:intron 20.0%
!! AACATTATTATTAGATCCAT+TGG + chr5_3:33852909-33852928 Msa0808800:intron 20.0%
!! ACATTATTATTAGATCCATT+GGG + chr5_3:33852910-33852929 Msa0808800:intron 20.0%
!! AGAAAACAAAAAATAAACAC+CGG - chr5_3:33852956-33852975 None:intergenic 20.0%
!!! AATGAATTTTTGAAAACCAT+AGG + chr5_3:33853303-33853322 Msa0808800:intron 20.0%
!!! TATTATTCATAAGCTTGTTT+AGG + chr5_3:33853379-33853398 Msa0808800:intron 20.0%
!!! TATGAAGATACAATTTTTGT+TGG + chr5_3:33853422-33853441 Msa0808800:intron 20.0%
!!! ATGATTCTTTTTATGTTTCT+CGG + chr5_3:33854000-33854019 Msa0808800:intron 20.0%
!! TAATAAGATCATATACTAGA+AGG + chr5_3:33854024-33854043 Msa0808800:intron 20.0%
!! TTAATACTATTGTTAGTGTT+TGG + chr5_3:33854119-33854138 Msa0808800:intron 20.0%
!! TAATACTATTGTTAGTGTTT+GGG + chr5_3:33854120-33854139 Msa0808800:intron 20.0%
!! ATTTATTTGTACTTGTATGA+AGG + chr5_3:33854174-33854193 Msa0808800:intron 20.0%
!!! ATTTTGATGCATTTTATTAG+AGG - chr5_3:33854204-33854223 None:intergenic 20.0%
!! GATAAAAGTAGTAACTTTAT+TGG - chr5_3:33854288-33854307 None:intergenic 20.0%
!!! TAATTTAAAGCAGACTATTT+GGG - chr5_3:33854453-33854472 None:intergenic 20.0%
!!! ATAATTTAAAGCAGACTATT+TGG - chr5_3:33854454-33854473 None:intergenic 20.0%
!! AAAACAGAATGAGTATTAAT+TGG + chr5_3:33854694-33854713 Msa0808800:intron 20.0%
!!! TTCATTTCTTTTATTCTTTC+TGG + chr5_3:33854778-33854797 Msa0808800:intron 20.0%
!!! TTTAAAATATATGCGTGAAT+TGG - chr5_3:33854809-33854828 None:intergenic 20.0%
!! TCCTATTTGTTCATTAATAA+GGG - chr5_3:33854956-33854975 None:intergenic 20.0%
!! TTCCTATTTGTTCATTAATA+AGG - chr5_3:33854957-33854976 None:intergenic 20.0%
!! CGTTTAATTAATTGTATCAT+TGG - chr5_3:33855092-33855111 None:intergenic 20.0%
!! ATAGTTAGTAATACATGTAA+TGG + chr5_3:33855323-33855342 Msa0808800:intron 20.0%
!! TAGTTAGTAATACATGTAAT+GGG + chr5_3:33855324-33855343 Msa0808800:intron 20.0%
!! TTACATTGAAAAAGAAAAAC+TGG + chr5_3:33855475-33855494 Msa0808800:intron 20.0%
!!! ATATAACATGCTTTTACTTT+AGG + chr5_3:33855522-33855541 Msa0808800:intron 20.0%
!! TCTTATAAGTTATGATACTA+GGG - chr5_3:33855948-33855967 None:intergenic 20.0%
!! ATCTTATAAGTTATGATACT+AGG - chr5_3:33855949-33855968 None:intergenic 20.0%
!! GTAATATAAAAATGACTGAT+TGG - chr5_3:33856055-33856074 None:intergenic 20.0%
!!! ATCAGTCATTTTTATATTAC+AGG + chr5_3:33856055-33856074 Msa0808800:three_prime_UTR 20.0%
! GAAATAAAATGAAGATCCAT+TGG - chr5_3:33852759-33852778 None:intergenic 25.0%
! TTAAACTGTATATCCAAACA+GGG - chr5_3:33853054-33853073 None:intergenic 25.0%
! ATTAAACTGTATATCCAAAC+AGG - chr5_3:33853055-33853074 None:intergenic 25.0%
!!! AAGCTATAAGTTGTTTTCAT+TGG + chr5_3:33853151-33853170 Msa0808800:intron 25.0%
! AATTATTCACAATACTTGGA+GGG + chr5_3:33853873-33853892 Msa0808800:CDS 25.0%
! AACCTTCAAAGATAAGAAAA+TGG - chr5_3:33853964-33853983 None:intergenic 25.0%
!! TGATTCTTTTTATGTTTCTC+GGG + chr5_3:33854001-33854020 Msa0808800:intron 25.0%
! TGTTATATAAATGGAGTAAG+TGG - chr5_3:33854093-33854112 None:intergenic 25.0%
! TTCAATTTACAAAATGGAAC+TGG - chr5_3:33854245-33854264 None:intergenic 25.0%
! TCTGACTTCAATTTACAAAA+TGG - chr5_3:33854251-33854270 None:intergenic 25.0%
! TTTATCACTTCATAGTTCAT+AGG + chr5_3:33854302-33854321 Msa0808800:intron 25.0%
!! CTCACATTTACATTACATTT+TGG + chr5_3:33854540-33854559 Msa0808800:intron 25.0%
! TCCCTTATTAATGAACAAAT+AGG + chr5_3:33854952-33854971 Msa0808800:intron 25.0%
!!! ACTATAAGTTGATTAGTTGA+AGG - chr5_3:33855161-33855180 None:intergenic 25.0%
! TCAACACATTATATCTGTTT+AGG - chr5_3:33855254-33855273 None:intergenic 25.0%
! TTTATAAGAACATGTTCCAA+AGG - chr5_3:33855358-33855377 None:intergenic 25.0%
! TTGAATTCTAGATATTCTGT+TGG + chr5_3:33855432-33855451 Msa0808800:intron 25.0%
! TGAATTCTAGATATTCTGTT+GGG + chr5_3:33855433-33855452 Msa0808800:intron 25.0%
!!! GCTATTTTACAAAAAGCTTT+AGG - chr5_3:33855567-33855586 None:intergenic 25.0%
! TAAATAACAGACTATGACAA+TGG - chr5_3:33855618-33855637 None:intergenic 25.0%
! CATTAGAATAACATCAACAA+TGG - chr5_3:33855739-33855758 None:intergenic 25.0%
!!! TTCACACGTTTTAGTTTCTA+CGG - chr5_3:33852615-33852634 None:intergenic 30.0%
TACATACTAGCATAAACACT+TGG - chr5_3:33853228-33853247 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+AGG - chr5_3:33853329-33853348 None:intergenic 30.0%
!! TTTATAGTCAAGTTGAGAAC+TGG - chr5_3:33853519-33853538 None:intergenic 30.0%
! TCATTCTTGAGTGATACTTT+TGG + chr5_3:33853695-33853714 Msa0808800:intron 30.0%
!!! TGAGTGATACTTTTGGTTTT+CGG + chr5_3:33853702-33853721 Msa0808800:intron 30.0%
TAGAAGAAAGGAATACATCA+TGG - chr5_3:33853798-33853817 None:intergenic 30.0%
GATGACAATGAATAGAAGAA+AGG - chr5_3:33853810-33853829 None:intergenic 30.0%
TCGGAATTATTCACAATACT+TGG + chr5_3:33853869-33853888 Msa0808800:CDS 30.0%
GAATTATTCACAATACTTGG+AGG + chr5_3:33853872-33853891 Msa0808800:CDS 30.0%
! GACCATTTTCTTATCTTTGA+AGG + chr5_3:33853959-33853978 Msa0808800:intron 30.0%
AAGAATCATTAGCAAACTAC+AGG - chr5_3:33853989-33854008 None:intergenic 30.0%
TCCTACTTTAACAAATACAG+AGG + chr5_3:33854352-33854371 Msa0808800:intron 30.0%
! TCCTCTGTATTTGTTAAAGT+AGG - chr5_3:33854356-33854375 None:intergenic 30.0%
TATTACTTGAATAGAGATCC+TGG - chr5_3:33854498-33854517 None:intergenic 30.0%
CAAATAGGAAGTAATTCACT+AGG + chr5_3:33854967-33854986 Msa0808800:intron 30.0%
! CTTATTAAAAGCACAACAAC+AGG + chr5_3:33855648-33855667 Msa0808800:intron 30.0%
TTGTAAAACTATTGCGACTA+GGG - chr5_3:33855925-33855944 None:intergenic 30.0%
GTAGAAACTAAAACGTGTGA+AGG + chr5_3:33852614-33852633 Msa0808800:five_prime_UTR 35.0%
CATCTTGTGAATCTTGAGTT+AGG + chr5_3:33852669-33852688 Msa0808800:five_prime_UTR 35.0%
!!! CATTGGTTTTGTAATTCCCT+TGG - chr5_3:33852742-33852761 None:intergenic 35.0%
CAAGGGAATTACAAAACCAA+TGG + chr5_3:33852740-33852759 Msa0808800:intron 35.0%
! TTCATTTTGCAAGCGAAATC+CGG + chr5_3:33852934-33852953 Msa0808800:intron 35.0%
GGACTATATGGTAAGCATTT+CGG - chr5_3:33853033-33853052 None:intergenic 35.0%
ATATCCAAACAGGGACTATA+TGG - chr5_3:33853045-33853064 None:intergenic 35.0%
!! GTTGTTTTCATTGGCTAACT+TGG + chr5_3:33853160-33853179 Msa0808800:intron 35.0%
GCTTAGGAAAATAAGCTGAA+AGG + chr5_3:33853186-33853205 Msa0808800:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr5_3:33853251-33853270 Msa0808800:intron 35.0%
CTAAACTCTTCACATTGCTA+TGG - chr5_3:33853278-33853297 None:intergenic 35.0%
ACTAGAGATTCCAAGCTATT+GGG + chr5_3:33853598-33853617 Msa0808800:intron 35.0%
TTCTATAGAACCCAATAGCT+TGG - chr5_3:33853611-33853630 None:intergenic 35.0%
! TGCTATTCTTTGCTATGAGA+AGG + chr5_3:33853751-33853770 Msa0808800:intron 35.0%
GATTATGAGAACTCACAGTT+AGG - chr5_3:33853928-33853947 None:intergenic 35.0%
TCACTTCATAGTTCATAGGT+TGG + chr5_3:33854306-33854325 Msa0808800:intron 35.0%
CTGTCACATATATATCTTCC+AGG + chr5_3:33854477-33854496 Msa0808800:intron 35.0%
!!! ACATTTTGGTTGCAGTTCAT+TGG + chr5_3:33854554-33854573 Msa0808800:intron 35.0%
! GCAGTTCATTGGAAATTTTC+AGG + chr5_3:33854565-33854584 Msa0808800:intron 35.0%
AGTCTGTCATCAACATTCAT+CGG - chr5_3:33854638-33854657 None:intergenic 35.0%
CTTGAGAATCACATGAAACA+CGG + chr5_3:33854746-33854765 Msa0808800:intron 35.0%
TTGAGAATCACATGAAACAC+GGG + chr5_3:33854747-33854766 Msa0808800:intron 35.0%
ATGACTGCAAAAAGAAGACA+CGG - chr5_3:33854842-33854861 None:intergenic 35.0%
TCATTAATAAGGGAGAGAGA+GGG - chr5_3:33854946-33854965 None:intergenic 35.0%
TTCATTAATAAGGGAGAGAG+AGG - chr5_3:33854947-33854966 None:intergenic 35.0%
ATTGGATCATTTAGACCAGA+GGG - chr5_3:33855074-33855093 None:intergenic 35.0%
! AAGGTGATTTAAAATCAGCC+AGG - chr5_3:33855142-33855161 None:intergenic 35.0%
! CCATTTCTTTTACAAGCCAA+CGG - chr5_3:33855285-33855304 None:intergenic 35.0%
!! TTGGCTTGTAAAAGAAATGG+TGG + chr5_3:33855285-33855304 Msa0808800:intron 35.0%
CATGAGCTTATGAAGGTAAA+GGG - chr5_3:33855402-33855421 None:intergenic 35.0%
ACATGAGCTTATGAAGGTAA+AGG - chr5_3:33855403-33855422 None:intergenic 35.0%
TACCTTCATAAGCTCATGTA+TGG + chr5_3:33855404-33855423 Msa0808800:intron 35.0%
TACCATACATGAGCTTATGA+AGG - chr5_3:33855409-33855428 None:intergenic 35.0%
! ACTCTACTAGTTGCTTTACT+TGG - chr5_3:33855589-33855608 None:intergenic 35.0%
! TTAAAAGCACAACAACAGGA+TGG + chr5_3:33855652-33855671 Msa0808800:intron 35.0%
GTTGTAAAACTATTGCGACT+AGG - chr5_3:33855926-33855945 None:intergenic 35.0%
TTAAATACCGAGATTGCCCT+TGG + chr5_3:33852582-33852601 Msa0808800:five_prime_UTR 40.0%
TAAATACCGAGATTGCCCTT+GGG + chr5_3:33852583-33852602 Msa0808800:five_prime_UTR 40.0%
TGAGAAAATGCGAGATTCCA+AGG + chr5_3:33852722-33852741 Msa0808800:intron 40.0%
GAGAAAATGCGAGATTCCAA+GGG + chr5_3:33852723-33852742 Msa0808800:intron 40.0%
TTGAGAACTTCAGATCGATG+TGG + chr5_3:33852880-33852899 Msa0808800:intron 40.0%
GCTTGCAAAATGAAACCCAA+TGG - chr5_3:33852928-33852947 None:intergenic 40.0%
GCATTTCGGCAACAAGAAAA+AGG - chr5_3:33853019-33853038 None:intergenic 40.0%
CTTACCATATAGTCCCTGTT+TGG + chr5_3:33853038-33853057 Msa0808800:intron 40.0%
TTGAAAACCATAGGCCTGTT+TGG + chr5_3:33853312-33853331 Msa0808800:intron 40.0%
CACTAGAGATTCCAAGCTAT+TGG + chr5_3:33853597-33853616 Msa0808800:intron 40.0%
GGTACATTTCTTGAAGTGAG+AGG - chr5_3:33853832-33853851 None:intergenic 40.0%
TCACTTCAAGAAATGTACCG+TGG + chr5_3:33853833-33853852 Msa0808800:CDS 40.0%
CACTTCAAGAAATGTACCGT+GGG + chr5_3:33853834-33853853 Msa0808800:CDS 40.0%
! CAGTTAGGAGCACAAGAAAT+AGG - chr5_3:33853913-33853932 None:intergenic 40.0%
ACCATGTAGTGATGCATACT+CGG - chr5_3:33854907-33854926 None:intergenic 40.0%
! AGAAAAGGGAGAAAGTGTGA+CGG + chr5_3:33855019-33855038 Msa0808800:intron 40.0%
TTGGATCATTTAGACCAGAG+GGG - chr5_3:33855073-33855092 None:intergenic 40.0%
CATTGGATCATTTAGACCAG+AGG - chr5_3:33855075-33855094 None:intergenic 40.0%
AAATCAGCCAGGTTTAGAGA+AGG - chr5_3:33855131-33855150 None:intergenic 40.0%
!! TGTGTTGATTACATGACCGT+TGG + chr5_3:33855266-33855285 Msa0808800:intron 40.0%
!! CCGTTGGCTTGTAAAAGAAA+TGG + chr5_3:33855282-33855301 Msa0808800:intron 40.0%
TGAATGCAGTTTCCTGTTCT+CGG + chr5_3:33855768-33855787 Msa0808800:intron 40.0%
TATGAGGTTAACAAGCTCTC+TGG + chr5_3:33855802-33855821 Msa0808800:CDS 40.0%
TCCAGAACCAAAAAGCAAAG+TGG + chr5_3:33855847-33855866 Msa0808800:CDS 40.0%
CCAGAACCAAAAAGCAAAGT+GGG + chr5_3:33855848-33855867 Msa0808800:CDS 40.0%
TTTCTACGGCGAATACCCAA+GGG - chr5_3:33852601-33852620 None:intergenic 45.0%
TTGGCTAACTTGGACAGCTT+AGG + chr5_3:33853170-33853189 Msa0808800:intron 45.0%
TGCTATGGACCTGTTTGGAT+TGG - chr5_3:33853263-33853282 None:intergenic 45.0%
CACATTGCTATGGACCTGTT+TGG - chr5_3:33853268-33853287 None:intergenic 45.0%
AACCATAGGCCTGTTTGGAT+TGG + chr5_3:33853317-33853336 Msa0808800:intron 45.0%
! TCTTTGCTATGAGAAGGCCA+TGG + chr5_3:33853757-33853776 Msa0808800:intron 45.0%
TGTTCGTGTATGCAGGGATA+CGG + chr5_3:33854329-33854348 Msa0808800:intron 45.0%
!! GGAAATTTTCAGGAGACAGC+CGG + chr5_3:33854575-33854594 Msa0808800:CDS 45.0%
ATCACATGAAACACGGGATG+AGG + chr5_3:33854753-33854772 Msa0808800:intron 45.0%
ATGTAGTGATGCATACTCGG+TGG - chr5_3:33854904-33854923 None:intergenic 45.0%
ACCGAGTATGCATCACTACA+TGG + chr5_3:33854903-33854922 Msa0808800:CDS 45.0%
ATTTAGACCAGAGGGGTGAT+TGG - chr5_3:33855066-33855085 None:intergenic 45.0%
AGGTTTAGAGAAGGCTTGAC+TGG - chr5_3:33855122-33855141 None:intergenic 45.0%
AGTCAAGCCTTCTCTAAACC+TGG + chr5_3:33855121-33855140 Msa0808800:intron 45.0%
!! GTAATGGGTTGTGCATCCTT+TGG + chr5_3:33855339-33855358 Msa0808800:intron 45.0%
! GGAGTCACTTGTTGAAACAG+CGG - chr5_3:33855830-33855849 None:intergenic 45.0%
!!! CCCACTTTGCTTTTTGGTTC+TGG - chr5_3:33855851-33855870 None:intergenic 45.0%
!! AGCTCTCCCACTTTGCTTTT+TGG - chr5_3:33855857-33855876 None:intergenic 45.0%
CGAATACCCAAGGGCAATCT+CGG - chr5_3:33852592-33852611 None:intergenic 50.0%
GTTTCTACGGCGAATACCCA+AGG - chr5_3:33852602-33852621 None:intergenic 50.0%
AGCCAATCCAAACAGGCCTA+TGG - chr5_3:33853322-33853341 None:intergenic 50.0%
TTGCTATGAGAAGGCCATGG+CGG + chr5_3:33853760-33853779 Msa0808800:intron 50.0%
!! AGGTTGGTGTTCGTGTATGC+AGG + chr5_3:33854322-33854341 Msa0808800:intron 50.0%
! GGTTGGTGTTCGTGTATGCA+GGG + chr5_3:33854323-33854342 Msa0808800:intron 50.0%
TCAAATGCCAATCACCCCTC+TGG + chr5_3:33855056-33855075 Msa0808800:intron 50.0%
TGCTATGAGAAGGCCATGGC+GGG + chr5_3:33853761-33853780 Msa0808800:intron 55.0%
CCGACGATGCAAGTTTCCCA+CGG - chr5_3:33853853-33853872 None:intergenic 55.0%
CCGTGGGAAACTTGCATCGT+CGG + chr5_3:33853850-33853869 Msa0808800:CDS 55.0%
GAGACAGCCGGTGCAAAATC+TGG + chr5_3:33854587-33854606 Msa0808800:CDS 55.0%
AGCCGGTGCAAAATCTGGCT+GGG + chr5_3:33854592-33854611 Msa0808800:CDS 55.0%
! ACCCCAGCCAGATTTTGCAC+CGG - chr5_3:33854597-33854616 None:intergenic 55.0%
GGAGAGAGAGGGTAAGTGCA+GGG - chr5_3:33854935-33854954 None:intergenic 55.0%
AGAGCAACACAGCCGAGAAC+AGG - chr5_3:33855783-33855802 None:intergenic 55.0%
! CTCGGCTGTGTTGCTCTATG+AGG + chr5_3:33855786-33855805 Msa0808800:CDS 55.0%
GCTATGAGAAGGCCATGGCG+GGG + chr5_3:33853762-33853781 Msa0808800:intron 60.0%
CAGCCGGTGCAAAATCTGGC+TGG + chr5_3:33854591-33854610 Msa0808800:CDS 60.0%
GCCGGTGCAAAATCTGGCTG+GGG + chr5_3:33854593-33854612 Msa0808800:CDS 60.0%
GCAAAATCTGGCTGGGGTGC+TGG + chr5_3:33854599-33854618 Msa0808800:CDS 60.0%
GGGAGAGAGAGGGTAAGTGC+AGG - chr5_3:33854936-33854955 None:intergenic 60.0%
! AGAAGGCCATGGCGGGGTCT+GGG + chr5_3:33853768-33853787 Msa0808800:intron 65.0%
! GAGAAGGCCATGGCGGGGTC+TGG + chr5_3:33853767-33853786 Msa0808800:intron 70.0%
GGAACTCCCAGACCCCGCCA+TGG - chr5_3:33853777-33853796 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 33852541 33856089 33852541 ID=Msa0808800;Name=Msa0808800
chr5_3 mRNA 33852541 33856089 33852541 ID=Msa0808800-mRNA-1;Parent=Msa0808800;Name=Msa0808800-mRNA-1;_AED=0.22;_eAED=0.22;_QI=153|1|1|1|0.75|0.6|5|210|125
chr5_3 exon 33852541 33852690 33852541 ID=Msa0808800-mRNA-1:exon:10837;Parent=Msa0808800-mRNA-1
chr5_3 exon 33853773 33853931 33853773 ID=Msa0808800-mRNA-1:exon:10838;Parent=Msa0808800-mRNA-1
chr5_3 exon 33854569 33854620 33854569 ID=Msa0808800-mRNA-1:exon:10839;Parent=Msa0808800-mRNA-1
chr5_3 exon 33854858 33854924 33854858 ID=Msa0808800-mRNA-1:exon:10840;Parent=Msa0808800-mRNA-1
chr5_3 exon 33855777 33856089 33855777 ID=Msa0808800-mRNA-1:exon:10841;Parent=Msa0808800-mRNA-1
chr5_3 five_prime_UTR 33852541 33852690 33852541 ID=Msa0808800-mRNA-1:five_prime_utr;Parent=Msa0808800-mRNA-1
chr5_3 five_prime_UTR 33853773 33853775 33853773 ID=Msa0808800-mRNA-1:five_prime_utr;Parent=Msa0808800-mRNA-1
chr5_3 CDS 33853776 33853931 33853776 ID=Msa0808800-mRNA-1:cds;Parent=Msa0808800-mRNA-1
chr5_3 CDS 33854569 33854620 33854569 ID=Msa0808800-mRNA-1:cds;Parent=Msa0808800-mRNA-1
chr5_3 CDS 33854858 33854924 33854858 ID=Msa0808800-mRNA-1:cds;Parent=Msa0808800-mRNA-1
chr5_3 CDS 33855777 33855879 33855777 ID=Msa0808800-mRNA-1:cds;Parent=Msa0808800-mRNA-1
chr5_3 three_prime_UTR 33855880 33856089 33855880 ID=Msa0808800-mRNA-1:three_prime_utr;Parent=Msa0808800-mRNA-1
Gene Sequence

>Msa0808800

ATGGCGGGGTCTGGGAGTTCCATGATGTATTCCTTTCTTCTATTCATTGTCATCCTCTCACTTCAAGAAATGTACCGTGGGAAACTTGCATCGTCGGAATTATTCACAATACTTGGAGGGTTCACTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAGACAGCCGGTGCAAAATCTGGCTGGGGTGCTGTCATAATAGCAGAAGTAGTTGCATTGATTGCTGCAAGCACTGTCCACCGAGTATGCATCACTACATGTTTCCTGTTCTCGGCTGTGTTGCTCTATGAGGTTAACAAGCTCTCTGGATCCGCTGTTTCAACAAGTGACTCCAGAACCAAAAAGCAAAGTGGGAGAGCTTAG

Protein sequence

>Msa0808800

MAGSGSSMMYSFLLFIVILSLQEMYRGKLASSELFTILGGFTSSLLFLVLLTFIGNFQETAGAKSGWGAVIIAEVVALIAASTVHRVCITTCFLFSAVLLYEVNKLSGSAVSTSDSRTKKQSGRA*