AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126510 MtrunA17_Chr7g0268051 100.000 112 0 0 1 112 1 112 2.03e-79 228
Msa1126510 MtrunA17_Chr5g0436331 94.643 112 6 0 1 112 26 137 4.54e-77 223
Msa1126510 MtrunA17_Chr7g0268081 86.667 90 12 0 18 107 10 99 4.03e-53 161
Msa1126510 MtrunA17_Chr7g0268061 86.667 90 12 0 18 107 10 99 4.03e-53 161
Msa1126510 MtrunA17_Chr7g0268071 92.771 83 6 0 17 99 8 90 4.50e-53 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126510 AT1G74270.1 91.964 112 9 0 1 112 1 112 6.92e-74 214
Msa1126510 AT1G07070.1 91.071 112 10 0 1 112 1 112 7.72e-74 214
Msa1126510 AT3G55750.1 87.387 111 14 0 2 112 1 111 5.18e-71 207
Msa1126510 AT1G41880.1 86.486 111 15 0 2 112 1 111 7.87e-71 207
Msa1126510 AT1G41880.2 86.486 111 15 0 2 112 1 111 7.87e-71 207

Find 67 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATCCGTGTCGGGATTT+TGG 0.107146 7_3:+78068063 Msa1126510:five_prime_UTR
TGTTTACATATTTGAAAGTT+TGG 0.192364 7_3:+78067962 None:intergenic
AGGAAGATTTGATTTGAATT+TGG 0.236788 7_3:-78069542 None:intergenic
TGGTGTTCACTCCTTCAATT+TGG 0.242520 7_3:-78069384 None:intergenic
GTAAATTATTACCATTGATT+TGG 0.266957 7_3:-78069566 None:intergenic
CCAAAATCCCGACACGGATT+AGG 0.313817 7_3:-78068063 None:intergenic
GTTTACATATTTGAAAGTTT+GGG 0.342664 7_3:+78067963 None:intergenic
TAAATTATTACCATTGATTT+GGG 0.343670 7_3:-78069565 None:intergenic
CAAAATCCCGACACGGATTA+GGG 0.352631 7_3:-78068062 None:intergenic
GCCCCATATGCAACGGTAAT+GGG 0.353096 7_3:-78069479 None:intergenic
GAACCCATTACCGTTGCATA+TGG 0.373177 7_3:+78069476 Msa1126510:CDS
GGCTTCTATCATGGACGGTT+TGG 0.378675 7_3:-78068015 None:intergenic
GGTTTACCTCATATGTTACT+TGG 0.390121 7_3:-78069688 None:intergenic
CCAGAGATGTGTTTGGGTAC+TGG 0.398125 7_3:-78069360 None:intergenic
TTGGTATGCCGGCAAGAAAA+TGG 0.403183 7_3:+78069420 Msa1126510:CDS
ATTTGGACCAGAGATGTGTT+TGG 0.405595 7_3:-78069367 None:intergenic
GACGTCAAGGAGAGCGTGTC+AGG 0.412439 7_3:+78068117 Msa1126510:CDS
TTTGGACCAGAGATGTGTTT+GGG 0.422500 7_3:-78069366 None:intergenic
GGTTGCAGATTCAGGTGATA+AGG 0.430364 7_3:+78070490 Msa1126510:intron
CTGTTTAGACAGTTCAATGA+TGG 0.441400 7_3:+78070589 Msa1126510:three_prime_UTR
TGCCCCATATGCAACGGTAA+TGG 0.448613 7_3:-78069480 None:intergenic
AACCCATTACCGTTGCATAT+GGG 0.460048 7_3:+78069477 Msa1126510:CDS
ACATCTCTGGTCCAAATTGA+AGG 0.462436 7_3:+78069373 Msa1126510:CDS
TACGTGAGGGGTACAATCCT+TGG 0.470557 7_3:+78069210 Msa1126510:CDS
TTCTGGGCTTCTATCATGGA+CGG 0.481290 7_3:-78068020 None:intergenic
GTTTGCTGCTGCTGTGAAGA+TGG 0.484344 7_3:+78068088 Msa1126510:exon
GTACAATCCTTGGATACAAA+AGG 0.498010 7_3:+78069220 Msa1126510:CDS
ATAAAACCCTAATCCGTGTC+GGG 0.505300 7_3:+78068056 Msa1126510:five_prime_UTR
ATACCAAGCTACCTCTTCCT+TGG 0.508204 7_3:-78069404 None:intergenic
GAAGAGGTAGCTTGGTATGC+CGG 0.510952 7_3:+78069409 Msa1126510:CDS
GGTTCCGTTCTTCTTCACCT+TGG 0.512346 7_3:-78069458 None:intergenic
GTTTACCTCATATGTTACTT+GGG 0.516767 7_3:-78069687 None:intergenic
AAATCTTCCTCCCAAATCAA+TGG 0.516979 7_3:+78069555 Msa1126510:CDS
GTTTGGGTACTGGTTTACTT+TGG 0.518411 7_3:-78069350 None:intergenic
GATAAGGTCAGCAGGATTGT+GGG 0.519087 7_3:+78070506 Msa1126510:three_prime_UTR
TGATAAGGTCAGCAGGATTG+TGG 0.520862 7_3:+78070505 Msa1126510:three_prime_UTR
ACCCATTACCGTTGCATATG+GGG 0.524799 7_3:+78069478 Msa1126510:CDS
GCATATGGGGCAAGGTTACA+AGG 0.526923 7_3:+78069491 Msa1126510:CDS
CCAGTACCCAAACACATCTC+TGG 0.530530 7_3:+78069360 Msa1126510:CDS
AATGTTGTTTGCCACAGTAT+TGG 0.531465 7_3:+78070612 Msa1126510:three_prime_UTR
TTGTATTAGGCTTTACGTGA+GGG 0.535618 7_3:+78069197 Msa1126510:intron
AGGAGTGAACACCAAGGAAG+AGG 0.555068 7_3:+78069393 Msa1126510:CDS
ATTCAGGTGATAAGGTCAGC+AGG 0.555651 7_3:+78070498 Msa1126510:three_prime_UTR
ATGTACCCAAGTAACATATG+AGG 0.563414 7_3:+78069682 Msa1126510:CDS
ATAGAAGCCCAGAAAACCTC+GGG 0.571838 7_3:+78068029 Msa1126510:five_prime_UTR
GGCATATATCTACAAGGCCA+AGG 0.574061 7_3:+78069441 Msa1126510:CDS
AATAAAACCCTAATCCGTGT+CGG 0.576123 7_3:+78068055 Msa1126510:five_prime_UTR
GGCAAGGTTACAAGGCCTCA+TGG 0.577972 7_3:+78069499 Msa1126510:CDS
AAAAGAAACAACAATCCTTG+AGG 0.584495 7_3:-78070544 None:intergenic
TTTGTATTAGGCTTTACGTG+AGG 0.589429 7_3:+78069196 Msa1126510:intron
TTACCGTTGCATATGGGGCA+AGG 0.593071 7_3:+78069483 Msa1126510:CDS
ACACCAAGGAAGAGGTAGCT+TGG 0.593143 7_3:+78069401 Msa1126510:CDS
TGTATTAGGCTTTACGTGAG+GGG 0.606295 7_3:+78069198 Msa1126510:intron
AAGATGGTGAAGGGACGTCA+AGG 0.609822 7_3:+78068104 Msa1126510:exon
TGCTGCTGTGAAGATGGTGA+AGG 0.610958 7_3:+78068094 Msa1126510:exon
ATTATTACCATTGATTTGGG+AGG 0.614066 7_3:-78069562 None:intergenic
TATATTCAACACTGTGTGTG+TGG 0.615858 7_3:+78070650 Msa1126510:three_prime_UTR
GATAGAAGCCCAGAAAACCT+CGG 0.628390 7_3:+78068028 Msa1126510:five_prime_UTR
AAGGCCAAGGTGAAGAAGAA+CGG 0.630167 7_3:+78069454 Msa1126510:CDS
GAAAATGGCATATATCTACA+AGG 0.630318 7_3:+78069435 Msa1126510:CDS
GCTGCTGTGAAGATGGTGAA+GGG 0.632435 7_3:+78068095 Msa1126510:exon
TAACCTTGCCCCATATGCAA+CGG 0.648972 7_3:-78069486 None:intergenic
TTCATTAACAGCCAATACTG+TGG 0.653374 7_3:-78070623 None:intergenic
ACAAGGCCTCATGGTAACAG+TGG 0.683556 7_3:+78069508 Msa1126510:CDS
AAACGCCCAAAATCCCGACA+CGG 0.728606 7_3:-78068069 None:intergenic
ACAATACCACTGTTACCATG+AGG 0.737809 7_3:-78069514 None:intergenic
AATTGAAGGAGTGAACACCA+AGG 0.776962 7_3:+78069387 Msa1126510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGCAATTTTATAAAT+AGG + chr7_3:78070395-78070414 Msa1126510:intron 10.0%
!!! ATTTTGCAATTTTATAAATA+GGG + chr7_3:78070396-78070415 Msa1126510:intron 10.0%
!!! AACTACTTTTTTATGAAATT+TGG - chr7_3:78067989-78068008 None:intergenic 15.0%
!! GATGAAAATACAAATAAAAA+TGG - chr7_3:78068158-78068177 None:intergenic 15.0%
!!! TATCATTGTTTTAATTCATT+TGG + chr7_3:78068217-78068236 Msa1126510:intron 15.0%
!! TATAGAAAAGGAAAAAATAA+AGG - chr7_3:78068618-78068637 None:intergenic 15.0%
!!! TAAAGCTATTTTTATAGAAA+AGG - chr7_3:78068630-78068649 None:intergenic 15.0%
!!! TTTTGGTTTTATTTTTGTTA+GGG + chr7_3:78068859-78068878 Msa1126510:intron 15.0%
!!! TATCTGTTTTATTTTATGTT+TGG + chr7_3:78069259-78069278 Msa1126510:intron 15.0%
!!! TAAATTATTACCATTGATTT+GGG - chr7_3:78069568-78069587 None:intergenic 15.0%
!! TAATAAGAATAAAAATGTGT+TGG - chr7_3:78069591-78069610 None:intergenic 15.0%
!!! AATTTTGCAATTTTTTAAAG+AGG + chr7_3:78070284-78070303 Msa1126510:intron 15.0%
!!! ATTTTGCAATTTTTTAAAGA+GGG + chr7_3:78070285-78070304 Msa1126510:intron 15.0%
!! TTTCATAAAAAAGTAGTTAC+TGG + chr7_3:78067991-78068010 Msa1126510:five_prime_UTR 20.0%
!! TTCATAAAAAAGTAGTTACT+GGG + chr7_3:78067992-78068011 Msa1126510:five_prime_UTR 20.0%
!! AATATAGCTGCTAAAAAATT+GGG - chr7_3:78068750-78068769 None:intergenic 20.0%
!! AAATATAGCTGCTAAAAAAT+TGG - chr7_3:78068751-78068770 None:intergenic 20.0%
!!! CTTTTGGTTTTATTTTTGTT+AGG + chr7_3:78068858-78068877 Msa1126510:intron 20.0%
!!! ATTTTTGTTAGGGATTAAAT+TGG + chr7_3:78068869-78068888 Msa1126510:intron 20.0%
!!! TTTTTGTTAGGGATTAAATT+GGG + chr7_3:78068870-78068889 Msa1126510:intron 20.0%
!! AAAAGACACAAAAACATATT+TGG - chr7_3:78068972-78068991 None:intergenic 20.0%
!! AAAAGACACAAAAACATATT+TGG - chr7_3:78068972-78068991 None:intergenic 20.0%
!! TTTCTTGTTCAATTTGTATT+AGG + chr7_3:78069184-78069203 Msa1126510:intron 20.0%
!!! GTAAATTATTACCATTGATT+TGG - chr7_3:78069569-78069588 None:intergenic 20.0%
!! TTCATATTTGTAAAACTTGA+AGG - chr7_3:78069862-78069881 None:intergenic 20.0%
!! TAGAAACATAGTTTATTGTT+TGG + chr7_3:78070160-78070179 Msa1126510:intron 20.0%
! AAAAAAAAAGAGAGAGAAGT+AGG - chr7_3:78068524-78068543 None:intergenic 25.0%
! TAGTCCAGTTATAAAAATGT+CGG - chr7_3:78068807-78068826 None:intergenic 25.0%
!!! AGGAAGATTTGATTTGAATT+TGG - chr7_3:78069545-78069564 None:intergenic 25.0%
!!! CTATATATGGTTCTAAATCA+TGG + chr7_3:78070085-78070104 Msa1126510:intron 25.0%
! ACATTAACGTTGTTTATTCT+AGG - chr7_3:78070216-78070235 None:intergenic 25.0%
! TAACTGTTACATTGGATATT+TGG + chr7_3:78070469-78070488 Msa1126510:intron 25.0%
!!! ATGATTTTTTAGTAACCTCA+AGG + chr7_3:78070529-78070548 Msa1126510:three_prime_UTR 25.0%
ACATTAGCATGCAGTTAATA+AGG + chr7_3:78068264-78068283 Msa1126510:intron 30.0%
CATTAGCATGCAGTTAATAA+GGG + chr7_3:78068265-78068284 Msa1126510:intron 30.0%
TAAAATAAGCCAATCCAAAC+AGG - chr7_3:78068385-78068404 None:intergenic 30.0%
AGTCTCACAAAAACTTATGT+TGG - chr7_3:78068417-78068436 None:intergenic 30.0%
!!! ATGCTATGAGCTGTTTTTAT+AGG - chr7_3:78068579-78068598 None:intergenic 30.0%
! ATCACTCCACAAAGTATTAA+GGG - chr7_3:78068711-78068730 None:intergenic 30.0%
!! GTTCAGATTTCATTTTTGTC+AGG - chr7_3:78068777-78068796 None:intergenic 30.0%
ACAAAAATGAAATCTGAACC+TGG + chr7_3:78068778-78068797 Msa1126510:intron 30.0%
AGTCCAGTTATAAAAATGTC+GGG - chr7_3:78068806-78068825 None:intergenic 30.0%
AAAATATTGTGGGACGAAAA+TGG + chr7_3:78068897-78068916 Msa1126510:intron 30.0%
AAATATTGTGGGACGAAAAT+GGG + chr7_3:78068898-78068917 Msa1126510:intron 30.0%
! AAGTTTACCTTTTGTATCCA+AGG - chr7_3:78069230-78069249 None:intergenic 30.0%
! GTTTGGTTTATGAAAATGTC+TGG + chr7_3:78069276-78069295 Msa1126510:intron 30.0%
GAAAATGGCATATATCTACA+AGG + chr7_3:78069435-78069454 Msa1126510:CDS 30.0%
!! ATTATTACCATTGATTTGGG+AGG - chr7_3:78069565-78069584 None:intergenic 30.0%
!!! TTATCTTGACTTTTTGAGTG+TGG + chr7_3:78069627-78069646 Msa1126510:intron 30.0%
! GTTTACCTCATATGTTACTT+GGG - chr7_3:78069690-78069709 None:intergenic 30.0%
!! AAACAATTCAAAAAGCATCC+AGG - chr7_3:78069719-78069738 None:intergenic 30.0%
ACAAAATGCATGAAAAACAC+AGG - chr7_3:78069794-78069813 None:intergenic 30.0%
!! TCATGCATTTTGTCATTTGA+TGG + chr7_3:78069801-78069820 Msa1126510:intron 30.0%
!! CATGCATTTTGTCATTTGAT+GGG + chr7_3:78069802-78069821 Msa1126510:intron 30.0%
!! ATGCATTTTGTCATTTGATG+GGG + chr7_3:78069803-78069822 Msa1126510:intron 30.0%
CATATCTGATCTGAAAAATG+TGG + chr7_3:78070121-78070140 Msa1126510:intron 30.0%
! TTGTTTGGAATTCTATCAGA+AGG + chr7_3:78070175-78070194 Msa1126510:intron 30.0%
ACTCTATCTAACTGTTACAT+TGG + chr7_3:78070461-78070480 Msa1126510:intron 30.0%
AAAAGAAACAACAATCCTTG+AGG - chr7_3:78070547-78070566 None:intergenic 30.0%
! TATTATACCCGAGGTTTTCT+GGG - chr7_3:78068039-78068058 None:intergenic 35.0%
! TTATTATACCCGAGGTTTTC+TGG - chr7_3:78068040-78068059 None:intergenic 35.0%
!!! TTAGGGTTTTATTATACCCG+AGG - chr7_3:78068048-78068067 None:intergenic 35.0%
AATAAAACCCTAATCCGTGT+CGG + chr7_3:78068055-78068074 Msa1126510:five_prime_UTR 35.0%
ACTGCATGCTAATGTTTGAA+TGG - chr7_3:78068259-78068278 None:intergenic 35.0%
CTCACAAAAACTTATGTTGG+TGG - chr7_3:78068414-78068433 None:intergenic 35.0%
! GTTTTTGTGAGACTGTTGTT+TGG + chr7_3:78068423-78068442 Msa1126510:intron 35.0%
AGAACTTGTGAAAATCAGCT+GGG - chr7_3:78068492-78068511 None:intergenic 35.0%
! CAAAGTATTAAGGGCATGTT+TGG - chr7_3:78068702-78068721 None:intergenic 35.0%
AACATGCCCTTAATACTTTG+TGG + chr7_3:78068702-78068721 Msa1126510:intron 35.0%
! CATCACTCCACAAAGTATTA+AGG - chr7_3:78068712-78068731 None:intergenic 35.0%
CTTAATACTTTGTGGAGTGA+TGG + chr7_3:78068710-78068729 Msa1126510:intron 35.0%
ATAGCTGCTAAAAAATTGGG+AGG - chr7_3:78068747-78068766 None:intergenic 35.0%
GTCCAGTTATAAAAATGTCG+GGG - chr7_3:78068805-78068824 None:intergenic 35.0%
TCGCTAGTATGAATATCTCT+GGG + chr7_3:78068832-78068851 Msa1126510:intron 35.0%
AATTGGGTCGCAAAATATTG+TGG + chr7_3:78068886-78068905 Msa1126510:intron 35.0%
ATTGGGTCGCAAAATATTGT+GGG + chr7_3:78068887-78068906 Msa1126510:intron 35.0%
TTTGTATTAGGCTTTACGTG+AGG + chr7_3:78069196-78069215 Msa1126510:intron 35.0%
TTGTATTAGGCTTTACGTGA+GGG + chr7_3:78069197-78069216 Msa1126510:intron 35.0%
GTACAATCCTTGGATACAAA+AGG + chr7_3:78069220-78069239 Msa1126510:CDS 35.0%
AAATGTCTGGTTAGATGCTT+TGG + chr7_3:78069289-78069308 Msa1126510:intron 35.0%
!!! GATATATGCCATTTTCTTGC+CGG - chr7_3:78069431-78069450 None:intergenic 35.0%
AAATCTTCCTCCCAAATCAA+TGG + chr7_3:78069555-78069574 Msa1126510:CDS 35.0%
ATGTACCCAAGTAACATATG+AGG + chr7_3:78069682-78069701 Msa1126510:CDS 35.0%
GGTTTACCTCATATGTTACT+TGG - chr7_3:78069691-78069710 None:intergenic 35.0%
TCTTATACCTCAGAGTTATG+CGG + chr7_3:78070028-78070047 Msa1126510:intron 35.0%
GCTATCAGGAGAACTATATA+TGG + chr7_3:78070072-78070091 Msa1126510:intron 35.0%
TGAAAAATGTGGCAGTTGTA+TGG + chr7_3:78070132-78070151 Msa1126510:intron 35.0%
TATAAATAGGGCTTCTTCTC+TGG + chr7_3:78070408-78070427 Msa1126510:intron 35.0%
CTGTTTAGACAGTTCAATGA+TGG + chr7_3:78070589-78070608 Msa1126510:three_prime_UTR 35.0%
! AATGTTGTTTGCCACAGTAT+TGG + chr7_3:78070612-78070631 Msa1126510:three_prime_UTR 35.0%
TTCATTAACAGCCAATACTG+TGG - chr7_3:78070626-78070645 None:intergenic 35.0%
TATATTCAACACTGTGTGTG+TGG + chr7_3:78070650-78070669 Msa1126510:three_prime_UTR 35.0%
ATAAAACCCTAATCCGTGTC+GGG + chr7_3:78068056-78068075 Msa1126510:five_prime_UTR 40.0%
ACTGATGTCTAATGCCTGTT+TGG + chr7_3:78068368-78068387 Msa1126510:intron 40.0%
TGTCTAATGCCTGTTTGGAT+TGG + chr7_3:78068373-78068392 Msa1126510:intron 40.0%
GAACTTGTGAAAACAGCTCA+TGG + chr7_3:78068447-78068466 Msa1126510:intron 40.0%
GAGAACTTGTGAAAATCAGC+TGG - chr7_3:78068493-78068512 None:intergenic 40.0%
AAAATTGGGAGGACCAACAT+AGG - chr7_3:78068736-78068755 None:intergenic 40.0%
TTATAAAAATGTCGGGGACC+AGG - chr7_3:78068799-78068818 None:intergenic 40.0%
! GTCCCCGACATTTTTATAAC+TGG + chr7_3:78068800-78068819 Msa1126510:intron 40.0%
GTCGCTAGTATGAATATCTC+TGG + chr7_3:78068831-78068850 Msa1126510:intron 40.0%
!! GAATATCTCTGGGCTACTTT+TGG + chr7_3:78068842-78068861 Msa1126510:intron 40.0%
TGTATTAGGCTTTACGTGAG+GGG + chr7_3:78069198-78069217 Msa1126510:intron 40.0%
!! GTTTGGGTACTGGTTTACTT+TGG - chr7_3:78069353-78069372 None:intergenic 40.0%
TTTGGACCAGAGATGTGTTT+GGG - chr7_3:78069369-78069388 None:intergenic 40.0%
ATTTGGACCAGAGATGTGTT+TGG - chr7_3:78069370-78069389 None:intergenic 40.0%
ACATCTCTGGTCCAAATTGA+AGG + chr7_3:78069373-78069392 Msa1126510:CDS 40.0%
TGGTGTTCACTCCTTCAATT+TGG - chr7_3:78069387-78069406 None:intergenic 40.0%
AATTGAAGGAGTGAACACCA+AGG + chr7_3:78069387-78069406 Msa1126510:CDS 40.0%
AACCCATTACCGTTGCATAT+GGG + chr7_3:78069477-78069496 Msa1126510:CDS 40.0%
ACAATACCACTGTTACCATG+AGG - chr7_3:78069517-78069536 None:intergenic 40.0%
!! TCAAAAAGCATCCAGGACAT+GGG - chr7_3:78069712-78069731 None:intergenic 40.0%
!! TTCAAAAAGCATCCAGGACA+TGG - chr7_3:78069713-78069732 None:intergenic 40.0%
TGTAGACAGACATCAGTTCT+TGG + chr7_3:78069961-78069980 Msa1126510:intron 40.0%
! CTGCACTTTGTCTTATTACG+AGG + chr7_3:78070004-78070023 Msa1126510:intron 40.0%
GGATATTTGGTTGCAGATTC+AGG + chr7_3:78070482-78070501 Msa1126510:intron 40.0%
TTCTGGGCTTCTATCATGGA+CGG - chr7_3:78068023-78068042 None:intergenic 45.0%
! GGTTTTCTGGGCTTCTATCA+TGG - chr7_3:78068027-78068046 None:intergenic 45.0%
GATAGAAGCCCAGAAAACCT+CGG + chr7_3:78068028-78068047 Msa1126510:five_prime_UTR 45.0%
ATAGAAGCCCAGAAAACCTC+GGG + chr7_3:78068029-78068048 Msa1126510:five_prime_UTR 45.0%
! CAAAATCCCGACACGGATTA+GGG - chr7_3:78068065-78068084 None:intergenic 45.0%
! CTAATCCGTGTCGGGATTTT+GGG + chr7_3:78068064-78068083 Msa1126510:five_prime_UTR 45.0%
ATACCAAGCTACCTCTTCCT+TGG - chr7_3:78069407-78069426 None:intergenic 45.0%
TTGGTATGCCGGCAAGAAAA+TGG + chr7_3:78069420-78069439 Msa1126510:CDS 45.0%
GGCATATATCTACAAGGCCA+AGG + chr7_3:78069441-78069460 Msa1126510:CDS 45.0%
AAGGCCAAGGTGAAGAAGAA+CGG + chr7_3:78069454-78069473 Msa1126510:CDS 45.0%
GAACCCATTACCGTTGCATA+TGG + chr7_3:78069476-78069495 Msa1126510:CDS 45.0%
ACCCATTACCGTTGCATATG+GGG + chr7_3:78069478-78069497 Msa1126510:CDS 45.0%
TAACCTTGCCCCATATGCAA+CGG - chr7_3:78069489-78069508 None:intergenic 45.0%
TTTGAGTGTGGATGCATTGC+AGG + chr7_3:78069639-78069658 Msa1126510:intron 45.0%
TTGAGTGTGGATGCATTGCA+GGG + chr7_3:78069640-78069659 Msa1126510:intron 45.0%
TATGAGGTAAACCCATGTCC+TGG + chr7_3:78069698-78069717 Msa1126510:intron 45.0%
ACAAAGACCGCATAACTCTG+AGG - chr7_3:78070038-78070057 None:intergenic 45.0%
GAGTTATGCGGTCTTTGTAC+TGG + chr7_3:78070040-78070059 Msa1126510:intron 45.0%
TTTAAAGAGGGCCTCTTCTC+TGG + chr7_3:78070297-78070316 Msa1126510:intron 45.0%
CTACAGATAGACCAGAGAAG+AGG - chr7_3:78070311-78070330 None:intergenic 45.0%
GGTTGCAGATTCAGGTGATA+AGG + chr7_3:78070490-78070509 Msa1126510:intron 45.0%
ATTCAGGTGATAAGGTCAGC+AGG + chr7_3:78070498-78070517 Msa1126510:three_prime_UTR 45.0%
TGATAAGGTCAGCAGGATTG+TGG + chr7_3:78070505-78070524 Msa1126510:three_prime_UTR 45.0%
GATAAGGTCAGCAGGATTGT+GGG + chr7_3:78070506-78070525 Msa1126510:three_prime_UTR 45.0%
GGCTTCTATCATGGACGGTT+TGG - chr7_3:78068018-78068037 None:intergenic 50.0%
CCAAAATCCCGACACGGATT+AGG - chr7_3:78068066-78068085 None:intergenic 50.0%
! CCTAATCCGTGTCGGGATTT+TGG + chr7_3:78068063-78068082 Msa1126510:five_prime_UTR 50.0%
AAACGCCCAAAATCCCGACA+CGG - chr7_3:78068072-78068091 None:intergenic 50.0%
! GTTTGCTGCTGCTGTGAAGA+TGG + chr7_3:78068088-78068107 Msa1126510:exon 50.0%
TGCTGCTGTGAAGATGGTGA+AGG + chr7_3:78068094-78068113 Msa1126510:exon 50.0%
GCTGCTGTGAAGATGGTGAA+GGG + chr7_3:78068095-78068114 Msa1126510:exon 50.0%
AAGATGGTGAAGGGACGTCA+AGG + chr7_3:78068104-78068123 Msa1126510:exon 50.0%
TGTGGAGTGATGGCCTATGT+TGG + chr7_3:78068720-78068739 Msa1126510:intron 50.0%
! TACGTGAGGGGTACAATCCT+TGG + chr7_3:78069210-78069229 Msa1126510:CDS 50.0%
CCAGAGATGTGTTTGGGTAC+TGG - chr7_3:78069363-78069382 None:intergenic 50.0%
CCAGTACCCAAACACATCTC+TGG + chr7_3:78069360-78069379 Msa1126510:CDS 50.0%
AGGAGTGAACACCAAGGAAG+AGG + chr7_3:78069393-78069412 Msa1126510:CDS 50.0%
ACACCAAGGAAGAGGTAGCT+TGG + chr7_3:78069401-78069420 Msa1126510:CDS 50.0%
GAAGAGGTAGCTTGGTATGC+CGG + chr7_3:78069409-78069428 Msa1126510:CDS 50.0%
GGTTCCGTTCTTCTTCACCT+TGG - chr7_3:78069461-78069480 None:intergenic 50.0%
GCCCCATATGCAACGGTAAT+GGG - chr7_3:78069482-78069501 None:intergenic 50.0%
TGCCCCATATGCAACGGTAA+TGG - chr7_3:78069483-78069502 None:intergenic 50.0%
TTACCGTTGCATATGGGGCA+AGG + chr7_3:78069483-78069502 Msa1126510:CDS 50.0%
GCATATGGGGCAAGGTTACA+AGG + chr7_3:78069491-78069510 Msa1126510:CDS 50.0%
ACAAGGCCTCATGGTAACAG+TGG + chr7_3:78069508-78069527 Msa1126510:CDS 50.0%
ACTGGCACATGCTAGCTATC+AGG + chr7_3:78070058-78070077 Msa1126510:intron 50.0%
GGCAAGGTTACAAGGCCTCA+TGG + chr7_3:78069499-78069518 Msa1126510:CDS 55.0%
! GACGTCAAGGAGAGCGTGTC+AGG + chr7_3:78068117-78068136 Msa1126510:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78067976 78070732 78067976 ID=Msa1126510;Name=Msa1126510
chr7_3 mRNA 78067976 78070732 78067976 ID=Msa1126510-mRNA-1;Parent=Msa1126510;Name=Msa1126510-mRNA-1;_AED=0.34;_eAED=0.34;_QI=131|1|1|1|0.75|0.6|5|236|112
chr7_3 exon 78067976 78068138 78067976 ID=Msa1126510-mRNA-1:exon:21671;Parent=Msa1126510-mRNA-1
chr7_3 exon 78069206 78069241 78069206 ID=Msa1126510-mRNA-1:exon:21672;Parent=Msa1126510-mRNA-1
chr7_3 exon 78069348 78069576 78069348 ID=Msa1126510-mRNA-1:exon:21673;Parent=Msa1126510-mRNA-1
chr7_3 exon 78069661 78069703 78069661 ID=Msa1126510-mRNA-1:exon:21674;Parent=Msa1126510-mRNA-1
chr7_3 exon 78070498 78070732 78070498 ID=Msa1126510-mRNA-1:exon:21675;Parent=Msa1126510-mRNA-1
chr7_3 five_prime_UTR 78067976 78068106 78067976 ID=Msa1126510-mRNA-1:five_prime_utr;Parent=Msa1126510-mRNA-1
chr7_3 CDS 78068107 78068138 78068107 ID=Msa1126510-mRNA-1:cds;Parent=Msa1126510-mRNA-1
chr7_3 CDS 78069206 78069241 78069206 ID=Msa1126510-mRNA-1:cds;Parent=Msa1126510-mRNA-1
chr7_3 CDS 78069348 78069576 78069348 ID=Msa1126510-mRNA-1:cds;Parent=Msa1126510-mRNA-1
chr7_3 CDS 78069661 78069702 78069661 ID=Msa1126510-mRNA-1:cds;Parent=Msa1126510-mRNA-1
chr7_3 three_prime_UTR 78069703 78069703 78069703 ID=Msa1126510-mRNA-1:three_prime_utr;Parent=Msa1126510-mRNA-1
chr7_3 three_prime_UTR 78070498 78070732 78070498 ID=Msa1126510-mRNA-1:three_prime_utr;Parent=Msa1126510-mRNA-1
Gene Sequence

>Msa1126510

ATGGTGAAGGGACGTCAAGGAGAGCGTGTCAGGCTTTACGTGAGGGGTACAATCCTTGGATACAAAAGATCCAAAGTAAACCAGTACCCAAACACATCTCTGGTCCAAATTGAAGGAGTGAACACCAAGGAAGAGGTAGCTTGGTATGCCGGCAAGAAAATGGCATATATCTACAAGGCCAAGGTGAAGAAGAACGGAACCCATTACCGTTGCATATGGGGCAAGGTTACAAGGCCTCATGGTAACAGTGGTATTGTTCGTGCCAAATTCAAATCAAATCTTCCTCCCAAATCAATGGGATCTCGCGTAAGAGTATTTATGTACCCAAGTAACATATGA

Protein sequence

>Msa1126510

MVKGRQGERVRLYVRGTILGYKRSKVNQYPNTSLVQIEGVNTKEEVAWYAGKKMAYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGSRVRVFMYPSNI*