Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506480 | AES70782.2 | 74.157 | 89 | 8 | 1 | 194 | 267 | 1861 | 1949 | 3.52e-29 | 128 |
| Msa0506480 | AES70782.2 | 79.793 | 193 | 31 | 1 | 1 | 193 | 1052 | 1236 | 6.09e-94 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506480 | G7IV31 | 74.157 | 89 | 8 | 1 | 194 | 267 | 1861 | 1949 | 1.68e-29 | 128 |
| Msa0506480 | G7IV31 | 79.793 | 193 | 31 | 1 | 1 | 193 | 1052 | 1236 | 2.91e-94 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225320 | Msa0506480 | 0.802156 | 6.413130e-49 | -8.615850e-47 |
| Msa0388960 | Msa0506480 | 0.801610 | 8.301869e-49 | -8.615850e-47 |
| Msa0506440 | Msa0506480 | 0.981623 | 4.824062e-153 | -8.615850e-47 |
| Msa0506480 | Msa1283860 | 0.805700 | 1.176140e-49 | -8.615850e-47 |
| Msa0506480 | Msa1423890 | 0.813153 | 2.956485e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506480 | MtrunA17_Chr3g0108171 | 79.793 | 193 | 31 | 1 | 1 | 193 | 1070 | 1254 | 7.73e-98 | 313 |
| Msa0506480 | MtrunA17_Chr3g0108171 | 74.157 | 89 | 8 | 1 | 194 | 267 | 1879 | 1967 | 3.67e-33 | 127 |
| Msa0506480 | MtrunA17_Chr3g0108151 | 82.759 | 174 | 30 | 0 | 1 | 174 | 973 | 1146 | 1.00e-88 | 287 |
| Msa0506480 | MtrunA17_Chr3g0108151 | 59.756 | 82 | 25 | 1 | 194 | 267 | 1462 | 1543 | 1.24e-24 | 103 |
| Msa0506480 | MtrunA17_Chr3g0108151 | 67.273 | 55 | 18 | 0 | 139 | 193 | 1047 | 1101 | 4.24e-15 | 75.1 |
| Msa0506480 | MtrunA17_Chr3g0108811 | 75.401 | 187 | 38 | 1 | 1 | 187 | 1220 | 1398 | 2.50e-87 | 283 |
| Msa0506480 | MtrunA17_Chr3g0108811 | 62.281 | 114 | 43 | 0 | 70 | 183 | 1401 | 1514 | 4.82e-36 | 136 |
| Msa0506480 | MtrunA17_Chr3g0108811 | 53.659 | 82 | 21 | 2 | 194 | 267 | 1858 | 1930 | 2.13e-16 | 79.0 |
| Msa0506480 | MtrunA17_Chr3g0108111 | 58.755 | 257 | 88 | 4 | 1 | 247 | 151 | 399 | 2.94e-84 | 264 |
| Msa0506480 | MtrunA17_Chr3g0107931 | 72.376 | 181 | 49 | 1 | 3 | 183 | 1230 | 1409 | 1.69e-76 | 252 |
| Msa0506480 | MtrunA17_Chr3g0107931 | 65.169 | 89 | 16 | 1 | 194 | 267 | 1799 | 1887 | 3.18e-27 | 110 |
| Msa0506480 | MtrunA17_Chr3g0107931 | 61.538 | 52 | 20 | 0 | 139 | 190 | 1302 | 1353 | 1.14e-11 | 65.1 |
| Msa0506480 | MtrunA17_Chr3g0107271 | 67.403 | 181 | 54 | 3 | 3 | 183 | 8 | 183 | 7.68e-76 | 231 |
| Msa0506480 | MtrunA17_Chr3g0108821 | 71.839 | 174 | 41 | 1 | 1 | 174 | 1199 | 1364 | 1.98e-71 | 238 |
| Msa0506480 | MtrunA17_Chr3g0108821 | 52.809 | 89 | 27 | 2 | 194 | 267 | 1714 | 1802 | 2.65e-19 | 87.4 |
| Msa0506480 | MtrunA17_Chr3g0108071 | 72.674 | 172 | 36 | 2 | 3 | 174 | 352 | 512 | 3.46e-71 | 235 |
| Msa0506480 | MtrunA17_Chr3g0097601 | 55.093 | 216 | 87 | 3 | 1 | 207 | 7 | 221 | 2.92e-69 | 214 |
| Msa0506480 | MtrunA17_Chr3g0091861 | 64.516 | 186 | 56 | 4 | 1 | 178 | 1150 | 1333 | 9.37e-66 | 221 |
| Msa0506480 | MtrunA17_Chr3g0091861 | 57.812 | 64 | 13 | 1 | 194 | 257 | 1799 | 1848 | 6.96e-13 | 68.6 |
| Msa0506480 | MtrunA17_Chr3g0091861 | 49.275 | 69 | 34 | 1 | 123 | 190 | 1212 | 1280 | 1.29e-11 | 64.7 |
| Msa0506480 | MtrunA17_Chr3g0108011 | 63.388 | 183 | 45 | 2 | 1 | 183 | 1237 | 1397 | 1.45e-62 | 212 |
| Msa0506480 | MtrunA17_Chr3g0105551 | 60.544 | 147 | 54 | 1 | 32 | 178 | 1141 | 1283 | 4.10e-50 | 176 |
| Msa0506480 | MtrunA17_Chr3g0105551 | 50.562 | 89 | 29 | 2 | 194 | 267 | 1776 | 1864 | 1.45e-17 | 82.4 |
| Msa0506480 | MtrunA17_Chr3g0105481 | 59.864 | 147 | 55 | 1 | 32 | 178 | 1055 | 1197 | 1.43e-48 | 172 |
| Msa0506480 | MtrunA17_Chr3g0105601 | 60.544 | 147 | 54 | 2 | 32 | 178 | 261 | 403 | 2.23e-47 | 164 |
| Msa0506480 | MtrunA17_Chr3g0105501 | 56.250 | 144 | 55 | 2 | 39 | 180 | 1 | 138 | 1.84e-45 | 152 |
| Msa0506480 | MtrunA17_Chr3g0105521 | 59.184 | 147 | 56 | 1 | 32 | 178 | 1023 | 1165 | 2.08e-44 | 160 |
| Msa0506480 | MtrunA17_Chr3g0105521 | 53.659 | 82 | 25 | 2 | 194 | 267 | 1529 | 1605 | 3.17e-18 | 84.3 |
| Msa0506480 | MtrunA17_Chr3g0096701 | 65.741 | 108 | 37 | 0 | 67 | 174 | 39 | 146 | 1.91e-37 | 139 |
| Msa0506480 | MtrunA17_Chr2g0288311 | 58.268 | 127 | 41 | 3 | 58 | 183 | 14 | 129 | 2.04e-33 | 120 |
| Msa0506480 | MtrunA17_Chr3g0107081 | 60.185 | 108 | 32 | 1 | 67 | 174 | 34 | 130 | 2.38e-31 | 115 |
| Msa0506480 | MtrunA17_Chr3g0112521 | 85.246 | 61 | 9 | 0 | 197 | 257 | 6 | 66 | 2.18e-29 | 106 |
| Msa0506480 | MtrunA17_Chr3g0096771 | 47.967 | 123 | 45 | 2 | 160 | 267 | 171 | 289 | 3.80e-26 | 103 |
| Msa0506480 | MtrunA17_Chr3g0105471 | 60.976 | 82 | 24 | 1 | 194 | 267 | 165 | 246 | 1.81e-25 | 100 |
| Msa0506480 | MtrunA17_Chr1g0160951 | 35.976 | 164 | 101 | 3 | 10 | 171 | 1007 | 1168 | 2.66e-25 | 105 |
| Msa0506480 | MtrunA17_Chr3g0107641 | 58.427 | 89 | 22 | 1 | 194 | 267 | 104 | 192 | 7.04e-25 | 98.2 |
| Msa0506480 | MtrunA17_Chr3g0107171 | 58.427 | 89 | 22 | 1 | 194 | 267 | 295 | 383 | 7.52e-25 | 102 |
| Msa0506480 | MtrunA17_Chr2g0304131 | 57.303 | 89 | 23 | 1 | 194 | 267 | 227 | 315 | 1.08e-24 | 100 |
| Msa0506480 | MtrunA17_Chr7g0223911 | 57.317 | 82 | 27 | 1 | 194 | 267 | 79 | 160 | 1.63e-24 | 96.3 |
| Msa0506480 | MtrunA17_Chr3g0107261 | 57.303 | 89 | 23 | 1 | 194 | 267 | 311 | 399 | 1.71e-24 | 101 |
| Msa0506480 | MtrunA17_Chr5g0439121 | 34.302 | 172 | 107 | 2 | 14 | 182 | 1294 | 1462 | 5.49e-23 | 98.2 |
| Msa0506480 | MtrunA17_Chr5g0439121 | 30.435 | 161 | 100 | 3 | 21 | 175 | 981 | 1135 | 7.04e-13 | 68.6 |
| Msa0506480 | MtrunA17_Chr3g0106021 | 61.644 | 73 | 27 | 1 | 3 | 75 | 309 | 380 | 7.80e-22 | 93.6 |
| Msa0506480 | MtrunA17_Chr3g0109131 | 35.838 | 173 | 85 | 5 | 119 | 267 | 2 | 172 | 5.51e-20 | 84.7 |
| Msa0506480 | MtrunA17_Chr3g0100241 | 37.584 | 149 | 84 | 5 | 35 | 178 | 6 | 150 | 2.57e-19 | 84.0 |
| Msa0506480 | MtrunA17_Chr3g0105591 | 52.809 | 89 | 27 | 2 | 194 | 267 | 347 | 435 | 1.15e-18 | 85.1 |
| Msa0506480 | MtrunA17_Chr5g0443761 | 31.707 | 164 | 109 | 2 | 12 | 175 | 865 | 1025 | 7.76e-17 | 80.1 |
| Msa0506480 | MtrunA17_Chr3g0097011 | 49.438 | 89 | 16 | 2 | 194 | 267 | 323 | 397 | 1.69e-15 | 75.5 |
| Msa0506480 | MtrunA17_Chr3g0100261 | 34.028 | 144 | 86 | 3 | 40 | 178 | 1027 | 1166 | 4.14e-15 | 75.1 |
| Msa0506480 | MtrunA17_Chr8g0360991 | 33.051 | 118 | 73 | 1 | 61 | 178 | 1047 | 1158 | 7.24e-15 | 74.3 |
| Msa0506480 | MtrunA17_Chr3g0108761 | 46.067 | 89 | 19 | 2 | 194 | 267 | 106 | 180 | 1.50e-14 | 70.1 |
| Msa0506480 | MtrunA17_Chr3g0091851 | 48.315 | 89 | 17 | 2 | 194 | 267 | 1241 | 1315 | 1.86e-14 | 73.2 |
| Msa0506480 | MtrunA17_Chr3g0099591 | 33.333 | 135 | 83 | 3 | 43 | 174 | 1025 | 1155 | 5.40e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGCAGCCCTTGTTTCTA+AGG | 0.250812 | 3_4:-52834726 | None:intergenic |
| TTCTCAACCATGCAAGGTTT+TGG | 0.286856 | 3_4:-52834166 | None:intergenic |
| GCATATTATTGAAGATGATT+TGG | 0.296423 | 3_4:+52834481 | Msa0506480:CDS |
| GCATATCATTGAAGATGATT+TGG | 0.329503 | 3_4:+52834289 | Msa0506480:CDS |
| AGCTTTGAAAGACATTGATT+TGG | 0.377272 | 3_4:+52834088 | Msa0506480:CDS |
| ACAAATGATACTTTCTACTT+TGG | 0.415861 | 3_4:-52834033 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.426586 | 3_4:-52834324 | None:intergenic |
| CTCAGGAAGGTCTTTACATA+TGG | 0.428564 | 3_4:-52834420 | None:intergenic |
| ACTGATAAGGATTGGATTGA+TGG | 0.433370 | 3_4:+52834542 | Msa0506480:CDS |
| AGGTCTTTACATATGGAGAT+TGG | 0.459268 | 3_4:-52834413 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.469380 | 3_4:-52834516 | None:intergenic |
| GTTGTAGACATAAAATTTGA+GGG | 0.471158 | 3_4:-52834515 | None:intergenic |
| CAACAAAGACTGATAAGGAT+TGG | 0.483150 | 3_4:+52834534 | Msa0506480:CDS |
| TTCTTTCGTGACACGCTGCT+CGG | 0.485202 | 3_4:-52834633 | None:intergenic |
| TTTCCCTCCAAAACCTTGCA+TGG | 0.506614 | 3_4:+52834159 | Msa0506480:CDS |
| TCTTGATTCTCAACCATGCA+AGG | 0.518532 | 3_4:-52834172 | None:intergenic |
| GCTGCTTTAAATGCTCCTCT+TGG | 0.519394 | 3_4:+52834740 | Msa0506480:CDS |
| GTCTACAACAAAGACTGATA+AGG | 0.534544 | 3_4:+52834529 | Msa0506480:CDS |
| ATTCTCAGATCATATAGCTC+AGG | 0.541501 | 3_4:-52834437 | None:intergenic |
| CATTTATTGCAGGAATTGAG+TGG | 0.553799 | 3_4:+52833960 | Msa0506480:intron |
| ATTTATTGCAGGAATTGAGT+GGG | 0.554762 | 3_4:+52833961 | Msa0506480:intron |
| TCTCGGTTTGGAGAGACTTG+TGG | 0.570046 | 3_4:+52833998 | Msa0506480:CDS |
| TAGACACCTTATTATAGAAG+TGG | 0.586716 | 3_4:-52834222 | None:intergenic |
| TTGAAGAATGCAATGAGTTG+AGG | 0.601431 | 3_4:+52834459 | Msa0506480:CDS |
| AATTGACATCCTTAGAAACA+AGG | 0.603743 | 3_4:+52834717 | Msa0506480:CDS |
| GCAGGAATTGAGTGGGAATG+TGG | 0.613039 | 3_4:+52833968 | Msa0506480:intron |
| ATTGACATCCTTAGAAACAA+GGG | 0.631897 | 3_4:+52834718 | Msa0506480:CDS |
| AAGATAGTCTAATAGCCAAG+AGG | 0.638552 | 3_4:-52834755 | None:intergenic |
| ATATGGAGATTGGAAAGACA+TGG | 0.641312 | 3_4:-52834403 | None:intergenic |
| TCAGATCATATAGCTCAGGA+AGG | 0.678995 | 3_4:-52834433 | None:intergenic |
| ATTCTCATAAAATACAACTG+TGG | 0.697132 | 3_4:-52834245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTTAATCAACATG+TGG | + | chr3_4:52834679-52834698 | Msa0506480:CDS | 20.0% |
| !!! | AAACATTTTTAATCAACATG+TGG | + | chr3_4:52834679-52834698 | Msa0506480:CDS | 20.0% |
| ! | ATTCCTGCAATAAATGAATA+GGG | - | chr3_4:52833956-52833975 | None:intergenic | 25.0% |
| ! | AATTCCTGCAATAAATGAAT+AGG | - | chr3_4:52833957-52833976 | None:intergenic | 25.0% |
| ! | ACAAATGATACTTTCTACTT+TGG | - | chr3_4:52834036-52834055 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52834216-52834235 | Msa0506480:CDS | 25.0% |
| ! | ATTCTCATAAAATACAACTG+TGG | - | chr3_4:52834248-52834267 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52834327-52834346 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52834481-52834500 | Msa0506480:CDS | 25.0% |
| ! | GTTGTAGACATAAAATTTGA+GGG | - | chr3_4:52834326-52834345 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52834327-52834346 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3_4:52834590-52834609 | None:intergenic | 25.0% |
| ! | ATTCCTGCAATAAATGAATA+GGG | - | chr3_4:52833956-52833975 | None:intergenic | 25.0% |
| ! | AATTCCTGCAATAAATGAAT+AGG | - | chr3_4:52833957-52833976 | None:intergenic | 25.0% |
| ! | ACAAATGATACTTTCTACTT+TGG | - | chr3_4:52834036-52834055 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52834216-52834235 | Msa0506480:CDS | 25.0% |
| ! | ATTCTCATAAAATACAACTG+TGG | - | chr3_4:52834248-52834267 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52834327-52834346 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52834481-52834500 | Msa0506480:CDS | 25.0% |
| ! | GTTGTAGACATAAAATTTGA+GGG | - | chr3_4:52834326-52834345 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52834327-52834346 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3_4:52834590-52834609 | None:intergenic | 25.0% |
| TTCCTGCAATAAATGAATAG+GGG | - | chr3_4:52833955-52833974 | None:intergenic | 30.0% | |
| ATTTATTGCAGGAATTGAGT+GGG | + | chr3_4:52833961-52833980 | Msa0506480:intron | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52834088-52834107 | Msa0506480:CDS | 30.0% |
| TAGACACCTTATTATAGAAG+TGG | - | chr3_4:52834225-52834244 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52834289-52834308 | Msa0506480:CDS | 30.0% | |
| !!! | ACAACAACTTTTTCTAGCTT+TGG | - | chr3_4:52834362-52834381 | None:intergenic | 30.0% |
| AAATGCATTGCAAAAACTGT+TGG | + | chr3_4:52834607-52834626 | Msa0506480:CDS | 30.0% | |
| AATTGACATCCTTAGAAACA+AGG | + | chr3_4:52834717-52834736 | Msa0506480:CDS | 30.0% | |
| ATTGACATCCTTAGAAACAA+GGG | + | chr3_4:52834718-52834737 | Msa0506480:CDS | 30.0% | |
| TTCCTGCAATAAATGAATAG+GGG | - | chr3_4:52833955-52833974 | None:intergenic | 30.0% | |
| ATTTATTGCAGGAATTGAGT+GGG | + | chr3_4:52833961-52833980 | Msa0506480:intron | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52834088-52834107 | Msa0506480:CDS | 30.0% |
| TAGACACCTTATTATAGAAG+TGG | - | chr3_4:52834225-52834244 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52834289-52834308 | Msa0506480:CDS | 30.0% | |
| !!! | ACAACAACTTTTTCTAGCTT+TGG | - | chr3_4:52834362-52834381 | None:intergenic | 30.0% |
| AAATGCATTGCAAAAACTGT+TGG | + | chr3_4:52834607-52834626 | Msa0506480:CDS | 30.0% | |
| AATTGACATCCTTAGAAACA+AGG | + | chr3_4:52834717-52834736 | Msa0506480:CDS | 30.0% | |
| ATTGACATCCTTAGAAACAA+GGG | + | chr3_4:52834718-52834737 | Msa0506480:CDS | 30.0% | |
| TTCCCCTATTCATTTATTGC+AGG | + | chr3_4:52833950-52833969 | Msa0506480:intron | 35.0% | |
| CATTTATTGCAGGAATTGAG+TGG | + | chr3_4:52833960-52833979 | Msa0506480:intron | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52834122-52834141 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52834121-52834140 | Msa0506480:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52834122-52834141 | Msa0506480:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_4:52834136-52834155 | None:intergenic | 35.0% |
| ! | TGGAGGGAAAACGAATTTTT+GGG | - | chr3_4:52834149-52834168 | None:intergenic | 35.0% |
| ! | TTGGAGGGAAAACGAATTTT+TGG | - | chr3_4:52834150-52834169 | None:intergenic | 35.0% |
| ATATGGAGATTGGAAAGACA+TGG | - | chr3_4:52834406-52834425 | None:intergenic | 35.0% | |
| AGGTCTTTACATATGGAGAT+TGG | - | chr3_4:52834416-52834435 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52834440-52834459 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52834459-52834478 | Msa0506480:CDS | 35.0% | |
| GTCTACAACAAAGACTGATA+AGG | + | chr3_4:52834529-52834548 | Msa0506480:CDS | 35.0% | |
| CAACAAAGACTGATAAGGAT+TGG | + | chr3_4:52834534-52834553 | Msa0506480:CDS | 35.0% | |
| ACTGATAAGGATTGGATTGA+TGG | + | chr3_4:52834542-52834561 | Msa0506480:CDS | 35.0% | |
| TTCCCCTATTCATTTATTGC+AGG | + | chr3_4:52833950-52833969 | Msa0506480:intron | 35.0% | |
| CATTTATTGCAGGAATTGAG+TGG | + | chr3_4:52833960-52833979 | Msa0506480:intron | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52834122-52834141 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52834121-52834140 | Msa0506480:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52834122-52834141 | Msa0506480:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_4:52834136-52834155 | None:intergenic | 35.0% |
| ! | TGGAGGGAAAACGAATTTTT+GGG | - | chr3_4:52834149-52834168 | None:intergenic | 35.0% |
| ! | TTGGAGGGAAAACGAATTTT+TGG | - | chr3_4:52834150-52834169 | None:intergenic | 35.0% |
| ATATGGAGATTGGAAAGACA+TGG | - | chr3_4:52834406-52834425 | None:intergenic | 35.0% | |
| AGGTCTTTACATATGGAGAT+TGG | - | chr3_4:52834416-52834435 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52834440-52834459 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52834459-52834478 | Msa0506480:CDS | 35.0% | |
| GTCTACAACAAAGACTGATA+AGG | + | chr3_4:52834529-52834548 | Msa0506480:CDS | 35.0% | |
| CAACAAAGACTGATAAGGAT+TGG | + | chr3_4:52834534-52834553 | Msa0506480:CDS | 35.0% | |
| ACTGATAAGGATTGGATTGA+TGG | + | chr3_4:52834542-52834561 | Msa0506480:CDS | 35.0% | |
| ! | GGGAATGTGGATCATTTTCT+CGG | + | chr3_4:52833981-52834000 | Msa0506480:CDS | 40.0% |
| ! | TGTGGATCATTTTCTCGGTT+TGG | + | chr3_4:52833986-52834005 | Msa0506480:CDS | 40.0% |
| ! | TTCTCAACCATGCAAGGTTT+TGG | - | chr3_4:52834169-52834188 | None:intergenic | 40.0% |
| TCTTGATTCTCAACCATGCA+AGG | - | chr3_4:52834175-52834194 | None:intergenic | 40.0% | |
| CTCAGGAAGGTCTTTACATA+TGG | - | chr3_4:52834423-52834442 | None:intergenic | 40.0% | |
| TCAGATCATATAGCTCAGGA+AGG | - | chr3_4:52834436-52834455 | None:intergenic | 40.0% | |
| !! | TAAAGCAGCCCTTGTTTCTA+AGG | - | chr3_4:52834729-52834748 | None:intergenic | 40.0% |
| ! | GGGAATGTGGATCATTTTCT+CGG | + | chr3_4:52833981-52834000 | Msa0506480:CDS | 40.0% |
| ! | TGTGGATCATTTTCTCGGTT+TGG | + | chr3_4:52833986-52834005 | Msa0506480:CDS | 40.0% |
| ! | TTCTCAACCATGCAAGGTTT+TGG | - | chr3_4:52834169-52834188 | None:intergenic | 40.0% |
| TCTTGATTCTCAACCATGCA+AGG | - | chr3_4:52834175-52834194 | None:intergenic | 40.0% | |
| CTCAGGAAGGTCTTTACATA+TGG | - | chr3_4:52834423-52834442 | None:intergenic | 40.0% | |
| TCAGATCATATAGCTCAGGA+AGG | - | chr3_4:52834436-52834455 | None:intergenic | 40.0% | |
| !! | TAAAGCAGCCCTTGTTTCTA+AGG | - | chr3_4:52834729-52834748 | None:intergenic | 40.0% |
| TTTCCCTCCAAAACCTTGCA+TGG | + | chr3_4:52834159-52834178 | Msa0506480:CDS | 45.0% | |
| !!! | CAACCATGCAAGGTTTTGGA+GGG | - | chr3_4:52834165-52834184 | None:intergenic | 45.0% |
| !! | TCAACCATGCAAGGTTTTGG+AGG | - | chr3_4:52834166-52834185 | None:intergenic | 45.0% |
| ! | GCTGCTTTAAATGCTCCTCT+TGG | + | chr3_4:52834740-52834759 | Msa0506480:CDS | 45.0% |
| TTTCCCTCCAAAACCTTGCA+TGG | + | chr3_4:52834159-52834178 | Msa0506480:CDS | 45.0% | |
| !!! | CAACCATGCAAGGTTTTGGA+GGG | - | chr3_4:52834165-52834184 | None:intergenic | 45.0% |
| !! | TCAACCATGCAAGGTTTTGG+AGG | - | chr3_4:52834166-52834185 | None:intergenic | 45.0% |
| ! | GCTGCTTTAAATGCTCCTCT+TGG | + | chr3_4:52834740-52834759 | Msa0506480:CDS | 45.0% |
| GCAGGAATTGAGTGGGAATG+TGG | + | chr3_4:52833968-52833987 | Msa0506480:intron | 50.0% | |
| !! | TCTCGGTTTGGAGAGACTTG+TGG | + | chr3_4:52833998-52834017 | Msa0506480:CDS | 50.0% |
| TTCTTTCGTGACACGCTGCT+CGG | - | chr3_4:52834636-52834655 | None:intergenic | 50.0% | |
| GCAGGAATTGAGTGGGAATG+TGG | + | chr3_4:52833968-52833987 | Msa0506480:intron | 50.0% | |
| !! | TCTCGGTTTGGAGAGACTTG+TGG | + | chr3_4:52833998-52834017 | Msa0506480:CDS | 50.0% |
| TTCTTTCGTGACACGCTGCT+CGG | - | chr3_4:52834636-52834655 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52833936 | 52834769 | 52833936 | ID=Msa0506480;Name=Msa0506480 |
| chr3_4 | mRNA | 52833936 | 52834769 | 52833936 | ID=Msa0506480-mRNA-1;Parent=Msa0506480;Name=Msa0506480-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|267 |
| chr3_4 | exon | 52833936 | 52833941 | 52833936 | ID=Msa0506480-mRNA-1:exon:11568;Parent=Msa0506480-mRNA-1 |
| chr3_4 | exon | 52833972 | 52834769 | 52833972 | ID=Msa0506480-mRNA-1:exon:11569;Parent=Msa0506480-mRNA-1 |
| chr3_4 | CDS | 52833936 | 52833941 | 52833936 | ID=Msa0506480-mRNA-1:cds;Parent=Msa0506480-mRNA-1 |
| chr3_4 | CDS | 52833972 | 52834769 | 52833972 | ID=Msa0506480-mRNA-1:cds;Parent=Msa0506480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
