Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506440 | XP_024634173.1 | 74.157 | 89 | 8 | 1 | 204 | 277 | 1879 | 1967 | 4.74e-29 | 128 |
| Msa0506440 | XP_024634173.1 | 79.381 | 194 | 32 | 1 | 10 | 203 | 1069 | 1254 | 3.11e-94 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506440 | A0A396ITA1 | 74.157 | 89 | 8 | 1 | 204 | 277 | 1879 | 1967 | 2.27e-29 | 128 |
| Msa0506440 | A0A396ITA1 | 79.381 | 194 | 32 | 1 | 10 | 203 | 1069 | 1254 | 1.48e-94 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225320 | Msa0506440 | 0.820866 | 5.470681e-53 | -8.615850e-47 |
| Msa0388960 | Msa0506440 | 0.815913 | 7.244251e-52 | -8.615850e-47 |
| Msa0272730 | Msa0506440 | 0.801914 | 7.191020e-49 | -8.615850e-47 |
| Msa0506440 | Msa0506480 | 0.981623 | 4.824062e-153 | -8.615850e-47 |
| Msa0506440 | Msa0567020 | 0.803784 | 2.954737e-49 | -8.615850e-47 |
| Msa0506440 | Msa0658570 | 0.815032 | 1.137611e-51 | -8.615850e-47 |
| Msa0506440 | Msa0703490 | 0.813368 | 2.651944e-51 | -8.615850e-47 |
| Msa0506440 | Msa0760130 | 0.800780 | 1.227348e-48 | -8.615850e-47 |
| Msa0506440 | Msa0769390 | 0.805598 | 1.235345e-49 | -8.615850e-47 |
| Msa0506440 | Msa0870530 | 0.822452 | 2.351444e-53 | -8.615850e-47 |
| Msa0506440 | Msa0909120 | 0.802446 | 5.588583e-49 | -8.615850e-47 |
| Msa0506440 | Msa0909140 | 0.801714 | 7.904676e-49 | -8.615850e-47 |
| Msa0506440 | Msa0990960 | 0.804520 | 2.076656e-49 | -8.615850e-47 |
| Msa0506440 | Msa1139000 | -0.802250 | 6.132560e-49 | -8.615850e-47 |
| Msa0506440 | Msa1162550 | -0.812165 | 4.862848e-51 | -8.615850e-47 |
| Msa0506440 | Msa1278840 | 0.808462 | 3.060428e-50 | -8.615850e-47 |
| Msa0506440 | Msa1283860 | 0.812499 | 4.111199e-51 | -8.615850e-47 |
| Msa0506440 | Msa1313150 | 0.805485 | 1.305234e-49 | -8.615850e-47 |
| Msa0506440 | Msa1322890 | 0.802375 | 5.780407e-49 | -8.615850e-47 |
| Msa0506440 | Msa1376890 | 0.808760 | 2.643919e-50 | -8.615850e-47 |
| Msa0506440 | Msa1423880 | 0.805416 | 1.348895e-49 | -8.615850e-47 |
| Msa0506440 | Msa1423890 | 0.829702 | 4.440063e-55 | -8.615850e-47 |
| Msa0506440 | Msa1431430 | 0.812582 | 3.943960e-51 | -8.615850e-47 |
| Msa0506440 | Msa1466810 | 0.814176 | 1.760647e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506440 | MtrunA17_Chr3g0108171 | 79.381 | 194 | 32 | 1 | 10 | 203 | 1069 | 1254 | 2.86e-98 | 315 |
| Msa0506440 | MtrunA17_Chr3g0108171 | 74.157 | 89 | 8 | 1 | 204 | 277 | 1879 | 1967 | 4.36e-33 | 128 |
| Msa0506440 | MtrunA17_Chr3g0108151 | 83.333 | 174 | 29 | 0 | 11 | 184 | 973 | 1146 | 8.16e-89 | 288 |
| Msa0506440 | MtrunA17_Chr3g0108151 | 59.756 | 82 | 25 | 1 | 204 | 277 | 1462 | 1543 | 1.87e-24 | 102 |
| Msa0506440 | MtrunA17_Chr3g0108151 | 67.273 | 55 | 18 | 0 | 149 | 203 | 1047 | 1101 | 5.17e-15 | 75.1 |
| Msa0506440 | MtrunA17_Chr3g0108811 | 75.000 | 188 | 39 | 1 | 10 | 197 | 1219 | 1398 | 1.01e-87 | 285 |
| Msa0506440 | MtrunA17_Chr3g0108811 | 62.281 | 114 | 43 | 0 | 80 | 193 | 1401 | 1514 | 5.78e-36 | 136 |
| Msa0506440 | MtrunA17_Chr3g0108811 | 53.659 | 82 | 21 | 2 | 204 | 277 | 1858 | 1930 | 2.37e-16 | 79.0 |
| Msa0506440 | MtrunA17_Chr3g0108111 | 58.527 | 258 | 89 | 4 | 10 | 257 | 150 | 399 | 1.62e-84 | 265 |
| Msa0506440 | MtrunA17_Chr3g0107931 | 71.196 | 184 | 52 | 1 | 10 | 193 | 1227 | 1409 | 2.12e-76 | 253 |
| Msa0506440 | MtrunA17_Chr3g0107931 | 65.169 | 89 | 16 | 1 | 204 | 277 | 1799 | 1887 | 4.34e-27 | 110 |
| Msa0506440 | MtrunA17_Chr3g0107931 | 61.538 | 52 | 20 | 0 | 149 | 200 | 1302 | 1353 | 1.49e-11 | 64.7 |
| Msa0506440 | MtrunA17_Chr3g0107271 | 67.403 | 181 | 54 | 3 | 13 | 193 | 8 | 183 | 1.33e-75 | 230 |
| Msa0506440 | MtrunA17_Chr3g0108821 | 71.429 | 175 | 42 | 1 | 10 | 184 | 1198 | 1364 | 1.18e-71 | 239 |
| Msa0506440 | MtrunA17_Chr3g0108821 | 52.809 | 89 | 27 | 2 | 204 | 277 | 1714 | 1802 | 3.13e-19 | 87.8 |
| Msa0506440 | MtrunA17_Chr3g0108071 | 71.429 | 175 | 39 | 2 | 10 | 184 | 349 | 512 | 2.33e-71 | 236 |
| Msa0506440 | MtrunA17_Chr3g0097601 | 55.140 | 214 | 86 | 3 | 13 | 217 | 9 | 221 | 1.88e-68 | 213 |
| Msa0506440 | MtrunA17_Chr3g0091861 | 64.516 | 186 | 56 | 4 | 11 | 188 | 1150 | 1333 | 6.65e-66 | 222 |
| Msa0506440 | MtrunA17_Chr3g0091861 | 57.812 | 64 | 13 | 1 | 204 | 267 | 1799 | 1848 | 8.73e-13 | 68.6 |
| Msa0506440 | MtrunA17_Chr3g0091861 | 49.275 | 69 | 34 | 1 | 133 | 200 | 1212 | 1280 | 1.48e-11 | 64.7 |
| Msa0506440 | MtrunA17_Chr3g0108011 | 63.043 | 184 | 46 | 2 | 10 | 193 | 1236 | 1397 | 6.76e-63 | 214 |
| Msa0506440 | MtrunA17_Chr3g0105551 | 60.544 | 147 | 54 | 1 | 42 | 188 | 1141 | 1283 | 6.46e-50 | 176 |
| Msa0506440 | MtrunA17_Chr3g0105551 | 50.562 | 89 | 29 | 2 | 204 | 277 | 1776 | 1864 | 1.96e-17 | 82.4 |
| Msa0506440 | MtrunA17_Chr3g0105481 | 59.864 | 147 | 55 | 1 | 42 | 188 | 1055 | 1197 | 2.12e-48 | 172 |
| Msa0506440 | MtrunA17_Chr3g0105601 | 60.544 | 147 | 54 | 2 | 42 | 188 | 261 | 403 | 2.50e-47 | 164 |
| Msa0506440 | MtrunA17_Chr3g0105501 | 56.250 | 144 | 55 | 2 | 49 | 190 | 1 | 138 | 2.35e-45 | 152 |
| Msa0506440 | MtrunA17_Chr3g0105521 | 59.184 | 147 | 56 | 1 | 42 | 188 | 1023 | 1165 | 3.56e-44 | 160 |
| Msa0506440 | MtrunA17_Chr3g0105521 | 53.659 | 82 | 25 | 2 | 204 | 277 | 1529 | 1605 | 4.47e-18 | 84.3 |
| Msa0506440 | MtrunA17_Chr3g0096701 | 65.741 | 108 | 37 | 0 | 77 | 184 | 39 | 146 | 3.04e-37 | 139 |
| Msa0506440 | MtrunA17_Chr2g0288311 | 58.268 | 127 | 41 | 3 | 68 | 193 | 14 | 129 | 2.45e-33 | 120 |
| Msa0506440 | MtrunA17_Chr3g0107081 | 45.506 | 178 | 44 | 3 | 7 | 184 | 6 | 130 | 8.02e-33 | 120 |
| Msa0506440 | MtrunA17_Chr3g0112521 | 85.246 | 61 | 9 | 0 | 207 | 267 | 6 | 66 | 2.94e-29 | 106 |
| Msa0506440 | MtrunA17_Chr3g0096771 | 47.967 | 123 | 45 | 2 | 170 | 277 | 171 | 289 | 5.00e-26 | 103 |
| Msa0506440 | MtrunA17_Chr3g0105471 | 60.976 | 82 | 24 | 1 | 204 | 277 | 165 | 246 | 2.29e-25 | 100 |
| Msa0506440 | MtrunA17_Chr1g0160951 | 35.976 | 164 | 101 | 3 | 20 | 181 | 1007 | 1168 | 4.26e-25 | 104 |
| Msa0506440 | MtrunA17_Chr3g0107641 | 58.427 | 89 | 22 | 1 | 204 | 277 | 104 | 192 | 9.82e-25 | 97.8 |
| Msa0506440 | MtrunA17_Chr3g0107171 | 58.427 | 89 | 22 | 1 | 204 | 277 | 295 | 383 | 1.08e-24 | 101 |
| Msa0506440 | MtrunA17_Chr2g0304131 | 57.303 | 89 | 23 | 1 | 204 | 277 | 227 | 315 | 1.42e-24 | 100 |
| Msa0506440 | MtrunA17_Chr3g0107261 | 57.303 | 89 | 23 | 1 | 204 | 277 | 311 | 399 | 2.28e-24 | 100 |
| Msa0506440 | MtrunA17_Chr7g0223911 | 57.317 | 82 | 27 | 1 | 204 | 277 | 79 | 160 | 2.29e-24 | 95.9 |
| Msa0506440 | MtrunA17_Chr5g0439121 | 34.302 | 172 | 107 | 2 | 24 | 192 | 1294 | 1462 | 1.26e-22 | 97.8 |
| Msa0506440 | MtrunA17_Chr5g0439121 | 30.435 | 161 | 100 | 3 | 31 | 185 | 981 | 1135 | 8.27e-13 | 68.6 |
| Msa0506440 | MtrunA17_Chr3g0106021 | 59.211 | 76 | 30 | 1 | 10 | 85 | 306 | 380 | 3.62e-22 | 94.7 |
| Msa0506440 | MtrunA17_Chr3g0109131 | 35.838 | 173 | 85 | 5 | 129 | 277 | 2 | 172 | 7.57e-20 | 84.3 |
| Msa0506440 | MtrunA17_Chr3g0100241 | 38.095 | 147 | 82 | 5 | 47 | 188 | 8 | 150 | 3.02e-19 | 84.0 |
| Msa0506440 | MtrunA17_Chr3g0105591 | 52.809 | 89 | 27 | 2 | 204 | 277 | 347 | 435 | 1.57e-18 | 84.7 |
| Msa0506440 | MtrunA17_Chr5g0443761 | 31.902 | 163 | 108 | 2 | 22 | 184 | 865 | 1024 | 1.33e-16 | 79.7 |
| Msa0506440 | MtrunA17_Chr3g0097011 | 49.438 | 89 | 16 | 2 | 204 | 277 | 323 | 397 | 2.16e-15 | 75.5 |
| Msa0506440 | MtrunA17_Chr3g0100261 | 34.028 | 144 | 86 | 3 | 50 | 188 | 1027 | 1166 | 5.80e-15 | 75.1 |
| Msa0506440 | MtrunA17_Chr8g0360991 | 33.051 | 118 | 73 | 1 | 71 | 188 | 1047 | 1158 | 9.39e-15 | 74.3 |
| Msa0506440 | MtrunA17_Chr3g0108761 | 46.067 | 89 | 19 | 2 | 204 | 277 | 106 | 180 | 1.62e-14 | 70.1 |
| Msa0506440 | MtrunA17_Chr3g0091851 | 48.315 | 89 | 17 | 2 | 204 | 277 | 1241 | 1315 | 2.50e-14 | 73.2 |
| Msa0506440 | MtrunA17_Chr3g0099591 | 33.333 | 135 | 83 | 3 | 53 | 184 | 1025 | 1155 | 7.28e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGCAGCCCTTGTTTCTA+AGG | 0.250812 | 3_4:-52796818 | None:intergenic |
| TTCTCAACCATGCAAGGTTT+TGG | 0.286856 | 3_4:-52796258 | None:intergenic |
| GCATATTATTGAAGATGATT+TGG | 0.296423 | 3_4:+52796573 | Msa0506440:CDS |
| AATTCCTGCAATAAATGAAT+AGG | 0.298022 | 3_4:-52796046 | None:intergenic |
| ATTCCTGCAATAAATGAATA+GGG | 0.315081 | 3_4:-52796045 | None:intergenic |
| GCATATCATTGAAGATGATT+TGG | 0.329503 | 3_4:+52796381 | Msa0506440:CDS |
| AGCTTTGAAAGACATTGATT+TGG | 0.377272 | 3_4:+52796180 | Msa0506440:CDS |
| TTCCCCTATTCATTTATTGC+AGG | 0.403578 | 3_4:+52796042 | Msa0506440:CDS |
| ACAAATGATACTTTCTACTT+TGG | 0.415861 | 3_4:-52796125 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.426586 | 3_4:-52796416 | None:intergenic |
| CTCAGGAAGGTCTTTACATA+TGG | 0.428564 | 3_4:-52796512 | None:intergenic |
| ACTGATAAGGATTGGATTGA+TGG | 0.433370 | 3_4:+52796634 | Msa0506440:CDS |
| AGGTCTTTACATATGGAGAT+TGG | 0.459268 | 3_4:-52796505 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.469380 | 3_4:-52796608 | None:intergenic |
| GTTGTAGACATAAAATTTGA+GGG | 0.471158 | 3_4:-52796607 | None:intergenic |
| CAACAAAGACTGATAAGGAT+TGG | 0.483150 | 3_4:+52796626 | Msa0506440:CDS |
| TTCTTTCGTGACACGCTGCT+CGG | 0.485202 | 3_4:-52796725 | None:intergenic |
| TTTCCCTCCAAAACCTTGCA+TGG | 0.506614 | 3_4:+52796251 | Msa0506440:CDS |
| TCTTGATTCTCAACCATGCA+AGG | 0.518532 | 3_4:-52796264 | None:intergenic |
| GCTGCTTTAAATGCTCCTCT+TGG | 0.519394 | 3_4:+52796832 | Msa0506440:CDS |
| GTCTACAACAAAGACTGATA+AGG | 0.534544 | 3_4:+52796621 | Msa0506440:CDS |
| ATTCTCAGATCATATAGCTC+AGG | 0.541501 | 3_4:-52796529 | None:intergenic |
| CATTTATTGCAGGAATTGAG+TGG | 0.553799 | 3_4:+52796052 | Msa0506440:CDS |
| ATTTATTGCAGGAATTGAGT+GGG | 0.554762 | 3_4:+52796053 | Msa0506440:CDS |
| TCTCGGTTTGGAGAGACTTG+TGG | 0.570046 | 3_4:+52796090 | Msa0506440:CDS |
| TAGACACCTTATTATAGAAG+TGG | 0.586716 | 3_4:-52796314 | None:intergenic |
| TTGAAGAATGCAATGAGTTG+AGG | 0.601431 | 3_4:+52796551 | Msa0506440:CDS |
| AATTGACATCCTTAGAAACA+AGG | 0.603743 | 3_4:+52796809 | Msa0506440:CDS |
| TTCCTGCAATAAATGAATAG+GGG | 0.607852 | 3_4:-52796044 | None:intergenic |
| GCAGGAATTGAGTGGGAATG+TGG | 0.613039 | 3_4:+52796060 | Msa0506440:CDS |
| ATTGACATCCTTAGAAACAA+GGG | 0.631897 | 3_4:+52796810 | Msa0506440:CDS |
| AAGATAGTCTAATAGCCAAG+AGG | 0.638552 | 3_4:-52796847 | None:intergenic |
| ATATGGAGATTGGAAAGACA+TGG | 0.641312 | 3_4:-52796495 | None:intergenic |
| TCAGATCATATAGCTCAGGA+AGG | 0.678995 | 3_4:-52796525 | None:intergenic |
| ATTCTCATAAAATACAACTG+TGG | 0.697132 | 3_4:-52796337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTTAATCAACATG+TGG | + | chr3_4:52796771-52796790 | Msa0506440:CDS | 20.0% |
| !!! | AAACATTTTTAATCAACATG+TGG | + | chr3_4:52796771-52796790 | Msa0506440:CDS | 20.0% |
| ! | ATTCCTGCAATAAATGAATA+GGG | - | chr3_4:52796048-52796067 | None:intergenic | 25.0% |
| ! | AATTCCTGCAATAAATGAAT+AGG | - | chr3_4:52796049-52796068 | None:intergenic | 25.0% |
| ! | ACAAATGATACTTTCTACTT+TGG | - | chr3_4:52796128-52796147 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52796308-52796327 | Msa0506440:CDS | 25.0% |
| ! | ATTCTCATAAAATACAACTG+TGG | - | chr3_4:52796340-52796359 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52796419-52796438 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52796573-52796592 | Msa0506440:CDS | 25.0% |
| ! | GTTGTAGACATAAAATTTGA+GGG | - | chr3_4:52796418-52796437 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52796419-52796438 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3_4:52796682-52796701 | None:intergenic | 25.0% |
| ! | ATTCCTGCAATAAATGAATA+GGG | - | chr3_4:52796048-52796067 | None:intergenic | 25.0% |
| ! | AATTCCTGCAATAAATGAAT+AGG | - | chr3_4:52796049-52796068 | None:intergenic | 25.0% |
| ! | ACAAATGATACTTTCTACTT+TGG | - | chr3_4:52796128-52796147 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_4:52796308-52796327 | Msa0506440:CDS | 25.0% |
| ! | ATTCTCATAAAATACAACTG+TGG | - | chr3_4:52796340-52796359 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52796419-52796438 | None:intergenic | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_4:52796573-52796592 | Msa0506440:CDS | 25.0% |
| ! | GTTGTAGACATAAAATTTGA+GGG | - | chr3_4:52796418-52796437 | None:intergenic | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_4:52796419-52796438 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3_4:52796682-52796701 | None:intergenic | 25.0% |
| TTCCTGCAATAAATGAATAG+GGG | - | chr3_4:52796047-52796066 | None:intergenic | 30.0% | |
| ATTTATTGCAGGAATTGAGT+GGG | + | chr3_4:52796053-52796072 | Msa0506440:CDS | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52796180-52796199 | Msa0506440:CDS | 30.0% |
| TAGACACCTTATTATAGAAG+TGG | - | chr3_4:52796317-52796336 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52796381-52796400 | Msa0506440:CDS | 30.0% | |
| !!! | ACAACAACTTTTTCTAGCTT+TGG | - | chr3_4:52796454-52796473 | None:intergenic | 30.0% |
| AAATGCATTGCAAAAACTGT+TGG | + | chr3_4:52796699-52796718 | Msa0506440:CDS | 30.0% | |
| AATTGACATCCTTAGAAACA+AGG | + | chr3_4:52796809-52796828 | Msa0506440:CDS | 30.0% | |
| ATTGACATCCTTAGAAACAA+GGG | + | chr3_4:52796810-52796829 | Msa0506440:CDS | 30.0% | |
| TTCCTGCAATAAATGAATAG+GGG | - | chr3_4:52796047-52796066 | None:intergenic | 30.0% | |
| ATTTATTGCAGGAATTGAGT+GGG | + | chr3_4:52796053-52796072 | Msa0506440:CDS | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_4:52796180-52796199 | Msa0506440:CDS | 30.0% |
| TAGACACCTTATTATAGAAG+TGG | - | chr3_4:52796317-52796336 | None:intergenic | 30.0% | |
| GCATATCATTGAAGATGATT+TGG | + | chr3_4:52796381-52796400 | Msa0506440:CDS | 30.0% | |
| !!! | ACAACAACTTTTTCTAGCTT+TGG | - | chr3_4:52796454-52796473 | None:intergenic | 30.0% |
| AAATGCATTGCAAAAACTGT+TGG | + | chr3_4:52796699-52796718 | Msa0506440:CDS | 30.0% | |
| AATTGACATCCTTAGAAACA+AGG | + | chr3_4:52796809-52796828 | Msa0506440:CDS | 30.0% | |
| ATTGACATCCTTAGAAACAA+GGG | + | chr3_4:52796810-52796829 | Msa0506440:CDS | 30.0% | |
| TTCCCCTATTCATTTATTGC+AGG | + | chr3_4:52796042-52796061 | Msa0506440:CDS | 35.0% | |
| CATTTATTGCAGGAATTGAG+TGG | + | chr3_4:52796052-52796071 | Msa0506440:CDS | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52796214-52796233 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52796213-52796232 | Msa0506440:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52796214-52796233 | Msa0506440:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_4:52796228-52796247 | None:intergenic | 35.0% |
| ! | TGGAGGGAAAACGAATTTTT+GGG | - | chr3_4:52796241-52796260 | None:intergenic | 35.0% |
| ! | TTGGAGGGAAAACGAATTTT+TGG | - | chr3_4:52796242-52796261 | None:intergenic | 35.0% |
| ATATGGAGATTGGAAAGACA+TGG | - | chr3_4:52796498-52796517 | None:intergenic | 35.0% | |
| AGGTCTTTACATATGGAGAT+TGG | - | chr3_4:52796508-52796527 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52796532-52796551 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52796551-52796570 | Msa0506440:CDS | 35.0% | |
| GTCTACAACAAAGACTGATA+AGG | + | chr3_4:52796621-52796640 | Msa0506440:CDS | 35.0% | |
| CAACAAAGACTGATAAGGAT+TGG | + | chr3_4:52796626-52796645 | Msa0506440:CDS | 35.0% | |
| ACTGATAAGGATTGGATTGA+TGG | + | chr3_4:52796634-52796653 | Msa0506440:CDS | 35.0% | |
| TTCCCCTATTCATTTATTGC+AGG | + | chr3_4:52796042-52796061 | Msa0506440:CDS | 35.0% | |
| CATTTATTGCAGGAATTGAG+TGG | + | chr3_4:52796052-52796071 | Msa0506440:CDS | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_4:52796214-52796233 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_4:52796213-52796232 | Msa0506440:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_4:52796214-52796233 | Msa0506440:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_4:52796228-52796247 | None:intergenic | 35.0% |
| ! | TGGAGGGAAAACGAATTTTT+GGG | - | chr3_4:52796241-52796260 | None:intergenic | 35.0% |
| ! | TTGGAGGGAAAACGAATTTT+TGG | - | chr3_4:52796242-52796261 | None:intergenic | 35.0% |
| ATATGGAGATTGGAAAGACA+TGG | - | chr3_4:52796498-52796517 | None:intergenic | 35.0% | |
| AGGTCTTTACATATGGAGAT+TGG | - | chr3_4:52796508-52796527 | None:intergenic | 35.0% | |
| ATTCTCAGATCATATAGCTC+AGG | - | chr3_4:52796532-52796551 | None:intergenic | 35.0% | |
| TTGAAGAATGCAATGAGTTG+AGG | + | chr3_4:52796551-52796570 | Msa0506440:CDS | 35.0% | |
| GTCTACAACAAAGACTGATA+AGG | + | chr3_4:52796621-52796640 | Msa0506440:CDS | 35.0% | |
| CAACAAAGACTGATAAGGAT+TGG | + | chr3_4:52796626-52796645 | Msa0506440:CDS | 35.0% | |
| ACTGATAAGGATTGGATTGA+TGG | + | chr3_4:52796634-52796653 | Msa0506440:CDS | 35.0% | |
| ! | GGGAATGTGGATCATTTTCT+CGG | + | chr3_4:52796073-52796092 | Msa0506440:CDS | 40.0% |
| ! | TGTGGATCATTTTCTCGGTT+TGG | + | chr3_4:52796078-52796097 | Msa0506440:CDS | 40.0% |
| ! | TTCTCAACCATGCAAGGTTT+TGG | - | chr3_4:52796261-52796280 | None:intergenic | 40.0% |
| TCTTGATTCTCAACCATGCA+AGG | - | chr3_4:52796267-52796286 | None:intergenic | 40.0% | |
| CTCAGGAAGGTCTTTACATA+TGG | - | chr3_4:52796515-52796534 | None:intergenic | 40.0% | |
| TCAGATCATATAGCTCAGGA+AGG | - | chr3_4:52796528-52796547 | None:intergenic | 40.0% | |
| !! | TAAAGCAGCCCTTGTTTCTA+AGG | - | chr3_4:52796821-52796840 | None:intergenic | 40.0% |
| ! | GGGAATGTGGATCATTTTCT+CGG | + | chr3_4:52796073-52796092 | Msa0506440:CDS | 40.0% |
| ! | TGTGGATCATTTTCTCGGTT+TGG | + | chr3_4:52796078-52796097 | Msa0506440:CDS | 40.0% |
| ! | TTCTCAACCATGCAAGGTTT+TGG | - | chr3_4:52796261-52796280 | None:intergenic | 40.0% |
| TCTTGATTCTCAACCATGCA+AGG | - | chr3_4:52796267-52796286 | None:intergenic | 40.0% | |
| CTCAGGAAGGTCTTTACATA+TGG | - | chr3_4:52796515-52796534 | None:intergenic | 40.0% | |
| TCAGATCATATAGCTCAGGA+AGG | - | chr3_4:52796528-52796547 | None:intergenic | 40.0% | |
| !! | TAAAGCAGCCCTTGTTTCTA+AGG | - | chr3_4:52796821-52796840 | None:intergenic | 40.0% |
| TTTCCCTCCAAAACCTTGCA+TGG | + | chr3_4:52796251-52796270 | Msa0506440:CDS | 45.0% | |
| !!! | CAACCATGCAAGGTTTTGGA+GGG | - | chr3_4:52796257-52796276 | None:intergenic | 45.0% |
| !! | TCAACCATGCAAGGTTTTGG+AGG | - | chr3_4:52796258-52796277 | None:intergenic | 45.0% |
| ! | GCTGCTTTAAATGCTCCTCT+TGG | + | chr3_4:52796832-52796851 | Msa0506440:CDS | 45.0% |
| TTTCCCTCCAAAACCTTGCA+TGG | + | chr3_4:52796251-52796270 | Msa0506440:CDS | 45.0% | |
| !!! | CAACCATGCAAGGTTTTGGA+GGG | - | chr3_4:52796257-52796276 | None:intergenic | 45.0% |
| !! | TCAACCATGCAAGGTTTTGG+AGG | - | chr3_4:52796258-52796277 | None:intergenic | 45.0% |
| ! | GCTGCTTTAAATGCTCCTCT+TGG | + | chr3_4:52796832-52796851 | Msa0506440:CDS | 45.0% |
| GCAGGAATTGAGTGGGAATG+TGG | + | chr3_4:52796060-52796079 | Msa0506440:CDS | 50.0% | |
| !! | TCTCGGTTTGGAGAGACTTG+TGG | + | chr3_4:52796090-52796109 | Msa0506440:CDS | 50.0% |
| TTCTTTCGTGACACGCTGCT+CGG | - | chr3_4:52796728-52796747 | None:intergenic | 50.0% | |
| GCAGGAATTGAGTGGGAATG+TGG | + | chr3_4:52796060-52796079 | Msa0506440:CDS | 50.0% | |
| !! | TCTCGGTTTGGAGAGACTTG+TGG | + | chr3_4:52796090-52796109 | Msa0506440:CDS | 50.0% |
| TTCTTTCGTGACACGCTGCT+CGG | - | chr3_4:52796728-52796747 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52796028 | 52796861 | 52796028 | ID=Msa0506440;Name=Msa0506440 |
| chr3_4 | mRNA | 52796028 | 52796861 | 52796028 | ID=Msa0506440-mRNA-1;Parent=Msa0506440;Name=Msa0506440-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|277 |
| chr3_4 | exon | 52796028 | 52796861 | 52796028 | ID=Msa0506440-mRNA-1:exon:11626;Parent=Msa0506440-mRNA-1 |
| chr3_4 | CDS | 52796028 | 52796861 | 52796028 | ID=Msa0506440-mRNA-1:cds;Parent=Msa0506440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
