Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508150 | XP_013460725.1 | 94.406 | 286 | 16 | 0 | 37 | 322 | 194 | 479 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508150 | sp|Q5XET5|HESO1_ARATH | 35.103 | 339 | 172 | 8 | 14 | 316 | 182 | 508 | 1.29e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508150 | A0A072UY73 | 94.406 | 286 | 16 | 0 | 37 | 322 | 194 | 479 | 0.0 | 564 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379770 | Msa0508150 | 0.803220 | 3.868030e-49 | -8.615850e-47 |
| Msa0480220 | Msa0508150 | 0.881114 | 3.141689e-70 | -8.615850e-47 |
| Msa0508150 | Msa1269480 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
| Msa0508150 | Msa1452930 | 0.893149 | 8.223460e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508150 | MtrunA17_Chr3g0112301 | 94.406 | 286 | 16 | 0 | 37 | 322 | 194 | 479 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508150 | AT2G39740.3 | 35.103 | 339 | 172 | 8 | 14 | 316 | 182 | 508 | 1.32e-47 | 167 |
| Msa0508150 | AT2G39740.2 | 35.103 | 339 | 172 | 8 | 14 | 316 | 182 | 508 | 1.32e-47 | 167 |
| Msa0508150 | AT2G39740.1 | 35.103 | 339 | 172 | 8 | 14 | 316 | 182 | 508 | 1.32e-47 | 167 |
Find 80 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCATTGGAGCTTGCTTC+TGG | 0.221452 | 3_4:+55927969 | None:intergenic |
| GCAGGCCTGACATTATAATT+TGG | 0.250450 | 3_4:+55928167 | None:intergenic |
| GCAGGCCTGACATTATAATT+TGG | 0.250450 | 3_4:+55928194 | None:intergenic |
| TTTGGCTATGCCATTGGATT+TGG | 0.252709 | 3_4:+55927849 | None:intergenic |
| GAGTAACCTCCGTTGTAATT+TGG | 0.260290 | 3_4:+55928140 | None:intergenic |
| ACGAATATTGCGTAAGTCTT+AGG | 0.260604 | 3_4:+55928564 | None:intergenic |
| GCCATTGGATTTGGAGCCTT+TGG | 0.273300 | 3_4:+55927858 | None:intergenic |
| TTCAGTGGTGGTAAAATTGC+AGG | 0.348532 | 3_4:+55929677 | None:intergenic |
| TTGCTTTGAAGTTGCACCAT+TGG | 0.359043 | 3_4:+55927956 | None:intergenic |
| TGAAAATGGCGCTGTGACTT+TGG | 0.373072 | 3_4:+55928068 | None:intergenic |
| GAATTCTCCGGTTGCTCAAA+AGG | 0.373262 | 3_4:+55928371 | None:intergenic |
| CCCCTTTGCCCCTGTGGCTG+TGG | 0.388907 | 3_4:+55928104 | None:intergenic |
| GAAAATGGCGCTGTGACTTT+GGG | 0.396112 | 3_4:+55928069 | None:intergenic |
| CCTGTTTATGTTGGCAGCAC+AGG | 0.397035 | 3_4:+55929332 | None:intergenic |
| AGCTCATCCACCATATTGTA+AGG | 0.409258 | 3_4:+55929644 | None:intergenic |
| AGATATATACCCTTACAATA+TGG | 0.416235 | 3_4:-55929654 | Msa0508150:CDS |
| CCTGTGCTGCCAACATAAAC+AGG | 0.419476 | 3_4:-55929332 | Msa0508150:CDS |
| ATCGGAATTTGCACTTATAG+TGG | 0.425285 | 3_4:-55928624 | Msa0508150:CDS |
| AAGATAGCTGAAGCATTTGT+AGG | 0.434109 | 3_4:-55928317 | Msa0508150:CDS |
| GGTCTCCATGCCTGCTGCTG+TGG | 0.439622 | 3_4:+55927879 | None:intergenic |
| ACATTATAATTTGGAATGGC+AGG | 0.441132 | 3_4:+55928176 | None:intergenic |
| ACATTATAATTTGGAATGGC+AGG | 0.441132 | 3_4:+55928203 | None:intergenic |
| ACGTCAAGGTCCACAGCAGC+AGG | 0.452998 | 3_4:-55927889 | Msa0508150:CDS |
| ATAATTTGGAATGGCAGGCC+TGG | 0.459603 | 3_4:+55928208 | None:intergenic |
| TTGCTTTGACGTTGAACCGT+TGG | 0.465095 | 3_4:+55928022 | None:intergenic |
| AGCATTCACAAAAGATTATG+TGG | 0.466736 | 3_4:+55930228 | None:intergenic |
| TCCACAGCCACAGGGGCAAA+GGG | 0.474201 | 3_4:-55928105 | Msa0508150:CDS |
| ACAGATCTTGCTGAATTCTC+CGG | 0.480099 | 3_4:+55928359 | None:intergenic |
| CCCTGTGGCTGTGGATGAGT+TGG | 0.480768 | 3_4:+55928113 | None:intergenic |
| ATGTGTGGAGTCTTATTGCC+AGG | 0.486616 | 3_4:-55928226 | Msa0508150:CDS |
| TGGATTTGAAGTTGCACCGT+TGG | 0.490464 | 3_4:+55927989 | None:intergenic |
| TTGTGAATGCTTTCAAACAA+AGG | 0.493079 | 3_4:-55930216 | Msa0508150:CDS |
| CCGTTGTAATTTGGAATGGC+AGG | 0.493742 | 3_4:+55928149 | None:intergenic |
| TCCAACTCATCCACAGCCAC+AGG | 0.499353 | 3_4:-55928114 | Msa0508150:CDS |
| AGTTTGCTCAGATCGATGAA+TGG | 0.499446 | 3_4:-55928656 | Msa0508150:CDS |
| CCATTCCAAATTATAATGTC+AGG | 0.499895 | 3_4:-55928172 | Msa0508150:CDS |
| CCATTCCAAATTATAATGTC+AGG | 0.499895 | 3_4:-55928199 | Msa0508150:CDS |
| GGACCTTGACGTGCTTTAGC+AGG | 0.501971 | 3_4:+55927900 | None:intergenic |
| TACTGTTGAAGTTGCACCGT+TGG | 0.503215 | 3_4:+55927923 | None:intergenic |
| GATGAATGGGCCTCAGAGAT+CGG | 0.505210 | 3_4:-55928642 | Msa0508150:CDS |
| GTTTGCTCAGATCGATGAAT+GGG | 0.505286 | 3_4:-55928655 | Msa0508150:CDS |
| ATAAGACTCCACACATGTGC+TGG | 0.513868 | 3_4:+55928233 | None:intergenic |
| ATCCACAGCCACAGGGGCAA+AGG | 0.533541 | 3_4:-55928106 | Msa0508150:CDS |
| AACACGCCCCTTTGCCCCTG+TGG | 0.533905 | 3_4:+55928098 | None:intergenic |
| CCTGACATTATAATTTGGAA+TGG | 0.541392 | 3_4:+55928172 | None:intergenic |
| CCTGACATTATAATTTGGAA+TGG | 0.541392 | 3_4:+55928199 | None:intergenic |
| AGATAGCTGAAGCATTTGTA+GGG | 0.542347 | 3_4:-55928316 | Msa0508150:CDS |
| ACCTCCGTTGTAATTTGGAA+TGG | 0.548068 | 3_4:+55928145 | None:intergenic |
| AGGCAAGGTGCAAGCTCCAA+CGG | 0.557349 | 3_4:-55928038 | Msa0508150:CDS |
| TGGCGCTGTGACTTTGGGTG+TGG | 0.559483 | 3_4:+55928074 | None:intergenic |
| AATCCAGAAGCAAGCTCCAA+TGG | 0.560044 | 3_4:-55927972 | Msa0508150:CDS |
| GGTTCATATCAAACAAGTCC+AGG | 0.565404 | 3_4:-55929311 | Msa0508150:CDS |
| AAGGTCCACAGCAGCAGGCA+TGG | 0.568937 | 3_4:-55927884 | Msa0508150:CDS |
| AACGGTTCAACGTCAAAGCA+AGG | 0.580256 | 3_4:-55928020 | Msa0508150:CDS |
| TGATATGAACCTGTTTATGT+TGG | 0.580786 | 3_4:+55929323 | None:intergenic |
| GAGAATTCAGCAAGATCTGT+CGG | 0.588586 | 3_4:-55928356 | Msa0508150:CDS |
| TTCACAAAAGATTATGTGGG+TGG | 0.590065 | 3_4:+55930232 | None:intergenic |
| AGATAAAGAACAACATGAGA+TGG | 0.594320 | 3_4:-55928590 | Msa0508150:CDS |
| TTGCACTTATAGTGGACAGT+GGG | 0.595106 | 3_4:-55928616 | Msa0508150:CDS |
| TATATACCCTTACAATATGG+TGG | 0.595530 | 3_4:-55929651 | Msa0508150:CDS |
| AAGCAAGGAGCAAGCTCCAA+CGG | 0.597196 | 3_4:-55927939 | Msa0508150:CDS |
| AATGGTGCAACTTCAAAGCA+AGG | 0.601932 | 3_4:-55927954 | Msa0508150:CDS |
| ACCAAAGGCTCCAAATCCAA+TGG | 0.605670 | 3_4:-55927859 | Msa0508150:CDS |
| GGCGCTGTGACTTTGGGTGT+GGG | 0.610172 | 3_4:+55928075 | None:intergenic |
| TAAGGGTATATATCTTTCAG+TGG | 0.614153 | 3_4:+55929662 | None:intergenic |
| GCTCATCCACCATATTGTAA+GGG | 0.628670 | 3_4:+55929645 | None:intergenic |
| AGCTAGCACCAGCACATGTG+TGG | 0.632721 | 3_4:-55928241 | Msa0508150:CDS |
| CCACAGCCACAGGGGCAAAG+GGG | 0.634379 | 3_4:-55928104 | Msa0508150:CDS |
| CCAACTCATCCACAGCCACA+GGG | 0.638903 | 3_4:-55928113 | Msa0508150:CDS |
| GCCATTCCAAATTACAACGG+AGG | 0.642837 | 3_4:-55928146 | Msa0508150:CDS |
| GGGTATATATCTTTCAGTGG+TGG | 0.645534 | 3_4:+55929665 | None:intergenic |
| GCATTCACAAAAGATTATGT+GGG | 0.647893 | 3_4:+55930229 | None:intergenic |
| AAGCAAGGAGCAAACTCCAA+CGG | 0.656235 | 3_4:-55928005 | Msa0508150:CDS |
| GCAGCAGGCATGGAGACCAA+AGG | 0.664174 | 3_4:-55927874 | Msa0508150:CDS |
| TTTGCACTTATAGTGGACAG+TGG | 0.675119 | 3_4:-55928617 | Msa0508150:CDS |
| GTACCTGCTAAAGCACGTCA+AGG | 0.675311 | 3_4:-55927903 | Msa0508150:CDS |
| CAACTCATCCACAGCCACAG+GGG | 0.708530 | 3_4:-55928112 | Msa0508150:CDS |
| CCTGCCATTCCAAATTACAA+CGG | 0.708652 | 3_4:-55928149 | Msa0508150:CDS |
| AGTGCAAATTCCGATCTCTG+AGG | 0.715212 | 3_4:+55928632 | None:intergenic |
| AATATGGTGGATGAGCTGAG+AGG | 0.762740 | 3_4:-55929638 | Msa0508150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGATTTCCAAAGAA+AGG | - | chr3_4:55928876-55928895 | Msa0508150:intron | 20.0% |
| !!! | ATTGGAATTTTAACAGATTA+GGG | + | chr3_4:55929033-55929052 | None:intergenic | 20.0% |
| !!! | AATTGGAATTTTAACAGATT+AGG | + | chr3_4:55929034-55929053 | None:intergenic | 20.0% |
| !! | TTAATGAAAAGCAAACAATA+TGG | - | chr3_4:55929084-55929103 | Msa0508150:intron | 20.0% |
| !! | TAAAATAAAAAATGCCAAGA+GGG | + | chr3_4:55929144-55929163 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAAATGCCAAG+AGG | + | chr3_4:55929145-55929164 | None:intergenic | 20.0% |
| !!! | TTTTATTGATTTCCAAAGAA+AGG | - | chr3_4:55928876-55928895 | Msa0508150:intron | 20.0% |
| !!! | ATTGGAATTTTAACAGATTA+GGG | + | chr3_4:55929033-55929052 | None:intergenic | 20.0% |
| !!! | AATTGGAATTTTAACAGATT+AGG | + | chr3_4:55929034-55929053 | None:intergenic | 20.0% |
| !!! | TCTTGTATTTGAATTTTACT+TGG | - | chr3_4:55929728-55929747 | Msa0508150:intron | 20.0% |
| !!! | TATTTGAATTTTACTTGGTT+AGG | - | chr3_4:55929733-55929752 | Msa0508150:intron | 20.0% |
| !!! | TTTTATTGATTTCCAAAGAA+AGG | - | chr3_4:55928876-55928895 | Msa0508150:intron | 20.0% |
| !!! | ATTGGAATTTTAACAGATTA+GGG | + | chr3_4:55929033-55929052 | None:intergenic | 20.0% |
| !!! | AATTGGAATTTTAACAGATT+AGG | + | chr3_4:55929034-55929053 | None:intergenic | 20.0% |
| !! | TTAATGAAAAGCAAACAATA+TGG | - | chr3_4:55929084-55929103 | Msa0508150:intron | 20.0% |
| !! | TAAAATAAAAAATGCCAAGA+GGG | + | chr3_4:55929144-55929163 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAAATGCCAAG+AGG | + | chr3_4:55929145-55929164 | None:intergenic | 20.0% |
| !!! | TTTTATTGATTTCCAAAGAA+AGG | - | chr3_4:55928876-55928895 | Msa0508150:intron | 20.0% |
| !!! | ATTGGAATTTTAACAGATTA+GGG | + | chr3_4:55929033-55929052 | None:intergenic | 20.0% |
| !!! | AATTGGAATTTTAACAGATT+AGG | + | chr3_4:55929034-55929053 | None:intergenic | 20.0% |
| !!! | TCTTGTATTTGAATTTTACT+TGG | - | chr3_4:55929728-55929747 | Msa0508150:intron | 20.0% |
| !!! | TATTTGAATTTTACTTGGTT+AGG | - | chr3_4:55929733-55929752 | Msa0508150:intron | 20.0% |
| !!! | TTTTGATTCATAGAGTTGTT+CGG | + | chr3_4:55928008-55928027 | None:intergenic | 25.0% |
| ! | ACAGACAAAACATATTAAAG+CGG | + | chr3_4:55928359-55928378 | None:intergenic | 25.0% |
| !! | CTTTAATATGTTTTGTCTGT+TGG | - | chr3_4:55928359-55928378 | Msa0508150:CDS | 25.0% |
| ! | AGATATATACCCTTACAATA+TGG | - | chr3_4:55928481-55928500 | Msa0508150:intron | 25.0% |
| ! | GGTTATATAAGAACTGATAA+TGG | + | chr3_4:55928723-55928742 | None:intergenic | 25.0% |
| ! | TGGAAATCAATAAAAAGTTC+AGG | + | chr3_4:55928871-55928890 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTACCTTTCTT+TGG | + | chr3_4:55928891-55928910 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTACCTTTCTT+TGG | + | chr3_4:55928891-55928910 | None:intergenic | 25.0% |
| ! | TTAATGAAAAGCAAACAGTA+TGG | - | chr3_4:55929367-55929386 | Msa0508150:CDS | 25.0% |
| ! | GTAAATAAAAAATGCCAAGA+GGG | + | chr3_4:55929427-55929446 | None:intergenic | 25.0% |
| ! | AGTAAATAAAAAATGCCAAG+AGG | + | chr3_4:55929428-55929447 | None:intergenic | 25.0% |
| !!! | TTTTGATTCATAGAGTTGTT+CGG | + | chr3_4:55928008-55928027 | None:intergenic | 25.0% |
| ! | ACAGACAAAACATATTAAAG+CGG | + | chr3_4:55928359-55928378 | None:intergenic | 25.0% |
| !! | CTTTAATATGTTTTGTCTGT+TGG | - | chr3_4:55928359-55928378 | Msa0508150:CDS | 25.0% |
| ! | AGATATATACCCTTACAATA+TGG | - | chr3_4:55928481-55928500 | Msa0508150:intron | 25.0% |
| ! | GGTTATATAAGAACTGATAA+TGG | + | chr3_4:55928723-55928742 | None:intergenic | 25.0% |
| ! | TGGAAATCAATAAAAAGTTC+AGG | + | chr3_4:55928871-55928890 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTACCTTTCTT+TGG | + | chr3_4:55928891-55928910 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTACCTTTCTT+TGG | + | chr3_4:55928891-55928910 | None:intergenic | 25.0% |
| ! | TTAATGAAAAGCAAACAGTA+TGG | - | chr3_4:55929367-55929386 | Msa0508150:CDS | 25.0% |
| ! | GTAAATAAAAAATGCCAAGA+GGG | + | chr3_4:55929427-55929446 | None:intergenic | 25.0% |
| ! | AGTAAATAAAAAATGCCAAG+AGG | + | chr3_4:55929428-55929447 | None:intergenic | 25.0% |
| AAGAGCGAAAAATTGTCTAT+GGG | + | chr3_4:55927882-55927901 | None:intergenic | 30.0% | |
| AAAGAGCGAAAAATTGTCTA+TGG | + | chr3_4:55927883-55927902 | None:intergenic | 30.0% | |
| GCATTCACAAAAGATTATGT+GGG | + | chr3_4:55927909-55927928 | None:intergenic | 30.0% | |
| AGCATTCACAAAAGATTATG+TGG | + | chr3_4:55927910-55927929 | None:intergenic | 30.0% | |
| TTGTGAATGCTTTCAAACAA+AGG | - | chr3_4:55927919-55927938 | Msa0508150:CDS | 30.0% | |
| TTTGATTCATAGAGTTGTTC+GGG | + | chr3_4:55928007-55928026 | None:intergenic | 30.0% | |
| TTTACAAGATTGAAACCAAG+TGG | + | chr3_4:55928278-55928297 | None:intergenic | 30.0% | |
| TCAATCTTGTAAAAACTGCT+AGG | - | chr3_4:55928285-55928304 | Msa0508150:CDS | 30.0% | |
| ! | TAAGGGTATATATCTTTCAG+TGG | + | chr3_4:55928476-55928495 | None:intergenic | 30.0% |
| TATATACCCTTACAATATGG+TGG | - | chr3_4:55928484-55928503 | Msa0508150:intron | 30.0% | |
| TATTCTATACGTTGAGATGT+TGG | - | chr3_4:55928556-55928575 | Msa0508150:intron | 30.0% | |
| ATTCTATACGTTGAGATGTT+GGG | - | chr3_4:55928557-55928576 | Msa0508150:intron | 30.0% | |
| ! | ATAGGAGCTAAAACTGTTTT+TGG | - | chr3_4:55928589-55928608 | Msa0508150:CDS | 30.0% |
| !! | CTTTTAGGGATTGAGTTATT+AGG | - | chr3_4:55928691-55928710 | Msa0508150:intron | 30.0% |
| TGATATGAACCTGTTTATGT+TGG | + | chr3_4:55928815-55928834 | None:intergenic | 30.0% | |
| ! | GGCAAAGATTTTCTGTTAAT+TGG | + | chr3_4:55928850-55928869 | None:intergenic | 30.0% |
| TTATCACTGCAACTTCTAAT+TGG | + | chr3_4:55929051-55929070 | None:intergenic | 30.0% | |
| TAAGAATGCCAGATGTTAAA+TGG | + | chr3_4:55929244-55929263 | None:intergenic | 30.0% | |
| TTATCACTGCAACTTCTAAT+TGG | + | chr3_4:55929051-55929070 | None:intergenic | 30.0% | |
| AGATAAAGAACAACATGAGA+TGG | - | chr3_4:55929545-55929564 | Msa0508150:intron | 30.0% | |
| ATTACTCGCACAAAAATGTT+TGG | - | chr3_4:55929665-55929684 | Msa0508150:CDS | 30.0% | |
| !! | AATTTTACTTGGTTAGGTTG+AGG | - | chr3_4:55929739-55929758 | Msa0508150:intron | 30.0% |
| ! | ACATTATAATTTGGAATGGC+AGG | + | chr3_4:55929935-55929954 | None:intergenic | 30.0% |
| CCTGACATTATAATTTGGAA+TGG | + | chr3_4:55929939-55929958 | None:intergenic | 30.0% | |
| CCATTCCAAATTATAATGTC+AGG | - | chr3_4:55929936-55929955 | Msa0508150:intron | 30.0% | |
| ! | ACATTATAATTTGGAATGGC+AGG | + | chr3_4:55929935-55929954 | None:intergenic | 30.0% |
| CCTGACATTATAATTTGGAA+TGG | + | chr3_4:55929939-55929958 | None:intergenic | 30.0% | |
| CCATTCCAAATTATAATGTC+AGG | - | chr3_4:55929936-55929955 | Msa0508150:intron | 30.0% | |
| AAGAGCGAAAAATTGTCTAT+GGG | + | chr3_4:55927882-55927901 | None:intergenic | 30.0% | |
| AAAGAGCGAAAAATTGTCTA+TGG | + | chr3_4:55927883-55927902 | None:intergenic | 30.0% | |
| GCATTCACAAAAGATTATGT+GGG | + | chr3_4:55927909-55927928 | None:intergenic | 30.0% | |
| AGCATTCACAAAAGATTATG+TGG | + | chr3_4:55927910-55927929 | None:intergenic | 30.0% | |
| TTGTGAATGCTTTCAAACAA+AGG | - | chr3_4:55927919-55927938 | Msa0508150:CDS | 30.0% | |
| TTTGATTCATAGAGTTGTTC+GGG | + | chr3_4:55928007-55928026 | None:intergenic | 30.0% | |
| TTTACAAGATTGAAACCAAG+TGG | + | chr3_4:55928278-55928297 | None:intergenic | 30.0% | |
| TCAATCTTGTAAAAACTGCT+AGG | - | chr3_4:55928285-55928304 | Msa0508150:CDS | 30.0% | |
| ! | TAAGGGTATATATCTTTCAG+TGG | + | chr3_4:55928476-55928495 | None:intergenic | 30.0% |
| TATATACCCTTACAATATGG+TGG | - | chr3_4:55928484-55928503 | Msa0508150:intron | 30.0% | |
| TATTCTATACGTTGAGATGT+TGG | - | chr3_4:55928556-55928575 | Msa0508150:intron | 30.0% | |
| ATTCTATACGTTGAGATGTT+GGG | - | chr3_4:55928557-55928576 | Msa0508150:intron | 30.0% | |
| ! | ATAGGAGCTAAAACTGTTTT+TGG | - | chr3_4:55928589-55928608 | Msa0508150:CDS | 30.0% |
| !! | CTTTTAGGGATTGAGTTATT+AGG | - | chr3_4:55928691-55928710 | Msa0508150:intron | 30.0% |
| TGATATGAACCTGTTTATGT+TGG | + | chr3_4:55928815-55928834 | None:intergenic | 30.0% | |
| ! | GGCAAAGATTTTCTGTTAAT+TGG | + | chr3_4:55928850-55928869 | None:intergenic | 30.0% |
| TTATCACTGCAACTTCTAAT+TGG | + | chr3_4:55929051-55929070 | None:intergenic | 30.0% | |
| TAAGAATGCCAGATGTTAAA+TGG | + | chr3_4:55929244-55929263 | None:intergenic | 30.0% | |
| TTATCACTGCAACTTCTAAT+TGG | + | chr3_4:55929051-55929070 | None:intergenic | 30.0% | |
| AGATAAAGAACAACATGAGA+TGG | - | chr3_4:55929545-55929564 | Msa0508150:intron | 30.0% | |
| ATTACTCGCACAAAAATGTT+TGG | - | chr3_4:55929665-55929684 | Msa0508150:CDS | 30.0% | |
| !! | AATTTTACTTGGTTAGGTTG+AGG | - | chr3_4:55929739-55929758 | Msa0508150:intron | 30.0% |
| ! | ACATTATAATTTGGAATGGC+AGG | + | chr3_4:55929935-55929954 | None:intergenic | 30.0% |
| CCTGACATTATAATTTGGAA+TGG | + | chr3_4:55929939-55929958 | None:intergenic | 30.0% | |
| CCATTCCAAATTATAATGTC+AGG | - | chr3_4:55929936-55929955 | Msa0508150:intron | 30.0% | |
| ! | ACATTATAATTTGGAATGGC+AGG | + | chr3_4:55929935-55929954 | None:intergenic | 30.0% |
| CCTGACATTATAATTTGGAA+TGG | + | chr3_4:55929939-55929958 | None:intergenic | 30.0% | |
| CCATTCCAAATTATAATGTC+AGG | - | chr3_4:55929936-55929955 | Msa0508150:intron | 30.0% | |
| TTCACAAAAGATTATGTGGG+TGG | + | chr3_4:55927906-55927925 | None:intergenic | 35.0% | |
| ! | ACTCACGATGCTTTTCTTTT+TGG | + | chr3_4:55927948-55927967 | None:intergenic | 35.0% |
| ! | CCTTTTCGTTTGTGTTAATG+TGG | + | chr3_4:55928061-55928080 | None:intergenic | 35.0% |
| CCACATTAACACAAACGAAA+AGG | - | chr3_4:55928058-55928077 | Msa0508150:CDS | 35.0% | |
| TGTCTTCTGCGAATAAGAAA+TGG | - | chr3_4:55928383-55928402 | Msa0508150:CDS | 35.0% | |
| TTCTATACGTTGAGATGTTG+GGG | - | chr3_4:55928558-55928577 | Msa0508150:intron | 35.0% | |
| ! | GATGTTGGGGCAAATTTTAT+AGG | - | chr3_4:55928571-55928590 | Msa0508150:CDS | 35.0% |
| !! | TTTGTACATGCACTGCTTTT+AGG | - | chr3_4:55928676-55928695 | Msa0508150:intron | 35.0% |
| !! | TTGTACATGCACTGCTTTTA+GGG | - | chr3_4:55928677-55928696 | Msa0508150:intron | 35.0% |
| ! | AGATTTTCTGTTAATTGGCC+TGG | + | chr3_4:55928845-55928864 | None:intergenic | 35.0% |
| TAAGAATGCCAGATGTTCAA+TGG | + | chr3_4:55928961-55928980 | None:intergenic | 35.0% | |
| AAACTATAACATAGCCCTCT+TGG | - | chr3_4:55929127-55929146 | Msa0508150:intron | 35.0% | |
| AAACTATAACATAGCCCTCT+TGG | - | chr3_4:55929127-55929146 | Msa0508150:intron | 35.0% | |
| ATCGGAATTTGCACTTATAG+TGG | - | chr3_4:55929511-55929530 | Msa0508150:intron | 35.0% | |
| ACGAATATTGCGTAAGTCTT+AGG | + | chr3_4:55929574-55929593 | None:intergenic | 35.0% | |
| !! | TTACCATTTTTCTGTGCGAT+TGG | - | chr3_4:55929626-55929645 | Msa0508150:intron | 35.0% |
| !! | TACCATTTTTCTGTGCGATT+GGG | - | chr3_4:55929627-55929646 | Msa0508150:intron | 35.0% |
| AGCAGGAGAATAAGACAAAA+GGG | + | chr3_4:55929694-55929713 | None:intergenic | 35.0% | |
| AGAAATATCAATAGCAGAGC+AGG | + | chr3_4:55929711-55929730 | None:intergenic | 35.0% | |
| ! | AAGATAGCTGAAGCATTTGT+AGG | - | chr3_4:55929818-55929837 | Msa0508150:intron | 35.0% |
| ! | AGATAGCTGAAGCATTTGTA+GGG | - | chr3_4:55929819-55929838 | Msa0508150:intron | 35.0% |
| TTCACAAAAGATTATGTGGG+TGG | + | chr3_4:55927906-55927925 | None:intergenic | 35.0% | |
| ! | ACTCACGATGCTTTTCTTTT+TGG | + | chr3_4:55927948-55927967 | None:intergenic | 35.0% |
| ! | CCTTTTCGTTTGTGTTAATG+TGG | + | chr3_4:55928061-55928080 | None:intergenic | 35.0% |
| CCACATTAACACAAACGAAA+AGG | - | chr3_4:55928058-55928077 | Msa0508150:CDS | 35.0% | |
| TGTCTTCTGCGAATAAGAAA+TGG | - | chr3_4:55928383-55928402 | Msa0508150:CDS | 35.0% | |
| TTCTATACGTTGAGATGTTG+GGG | - | chr3_4:55928558-55928577 | Msa0508150:intron | 35.0% | |
| ! | GATGTTGGGGCAAATTTTAT+AGG | - | chr3_4:55928571-55928590 | Msa0508150:CDS | 35.0% |
| !! | TTTGTACATGCACTGCTTTT+AGG | - | chr3_4:55928676-55928695 | Msa0508150:intron | 35.0% |
| !! | TTGTACATGCACTGCTTTTA+GGG | - | chr3_4:55928677-55928696 | Msa0508150:intron | 35.0% |
| ! | AGATTTTCTGTTAATTGGCC+TGG | + | chr3_4:55928845-55928864 | None:intergenic | 35.0% |
| TAAGAATGCCAGATGTTCAA+TGG | + | chr3_4:55928961-55928980 | None:intergenic | 35.0% | |
| AAACTATAACATAGCCCTCT+TGG | - | chr3_4:55929127-55929146 | Msa0508150:intron | 35.0% | |
| AAACTATAACATAGCCCTCT+TGG | - | chr3_4:55929127-55929146 | Msa0508150:intron | 35.0% | |
| ATCGGAATTTGCACTTATAG+TGG | - | chr3_4:55929511-55929530 | Msa0508150:intron | 35.0% | |
| ACGAATATTGCGTAAGTCTT+AGG | + | chr3_4:55929574-55929593 | None:intergenic | 35.0% | |
| !! | TTACCATTTTTCTGTGCGAT+TGG | - | chr3_4:55929626-55929645 | Msa0508150:intron | 35.0% |
| !! | TACCATTTTTCTGTGCGATT+GGG | - | chr3_4:55929627-55929646 | Msa0508150:intron | 35.0% |
| AGCAGGAGAATAAGACAAAA+GGG | + | chr3_4:55929694-55929713 | None:intergenic | 35.0% | |
| AGAAATATCAATAGCAGAGC+AGG | + | chr3_4:55929711-55929730 | None:intergenic | 35.0% | |
| ! | AAGATAGCTGAAGCATTTGT+AGG | - | chr3_4:55929818-55929837 | Msa0508150:intron | 35.0% |
| ! | AGATAGCTGAAGCATTTGTA+GGG | - | chr3_4:55929819-55929838 | Msa0508150:intron | 35.0% |
| GTGTTAATGTGGAAGAGTCT+TGG | + | chr3_4:55928050-55928069 | None:intergenic | 40.0% | |
| CACAAACGAAAAGGCTCTTA+TGG | - | chr3_4:55928067-55928086 | Msa0508150:CDS | 40.0% | |
| TGTAAAAACTGCTAGGTGCT+TGG | - | chr3_4:55928292-55928311 | Msa0508150:CDS | 40.0% | |
| GATCTTTGTCTTCTGATGCA+TGG | - | chr3_4:55928405-55928424 | Msa0508150:intron | 40.0% | |
| TTCAGTGGTGGTAAAATTGC+AGG | + | chr3_4:55928461-55928480 | None:intergenic | 40.0% | |
| GGGTATATATCTTTCAGTGG+TGG | + | chr3_4:55928473-55928492 | None:intergenic | 40.0% | |
| GCTCATCCACCATATTGTAA+GGG | + | chr3_4:55928493-55928512 | None:intergenic | 40.0% | |
| AGCTCATCCACCATATTGTA+AGG | + | chr3_4:55928494-55928513 | None:intergenic | 40.0% | |
| CGGGAATTACATCAAGACAA+TGG | + | chr3_4:55928744-55928763 | None:intergenic | 40.0% | |
| GGTTCATATCAAACAAGTCC+AGG | - | chr3_4:55928824-55928843 | Msa0508150:intron | 40.0% | |
| GGCATTCTTATGTGCACATA+CGG | - | chr3_4:55928971-55928990 | Msa0508150:intron | 40.0% | |
| TGCTCTCTCCATTTAACATC+TGG | - | chr3_4:55929233-55929252 | Msa0508150:intron | 40.0% | |
| AACAGATTAGGGAAAGAGAC+AGG | + | chr3_4:55929305-55929324 | None:intergenic | 40.0% | |
| ! | AGTTTGCTCAGATCGATGAA+TGG | - | chr3_4:55929479-55929498 | Msa0508150:intron | 40.0% |
| GTTTGCTCAGATCGATGAAT+GGG | - | chr3_4:55929480-55929499 | Msa0508150:intron | 40.0% | |
| !! | TTTGCACTTATAGTGGACAG+TGG | - | chr3_4:55929518-55929537 | Msa0508150:intron | 40.0% |
| !! | TTGCACTTATAGTGGACAGT+GGG | - | chr3_4:55929519-55929538 | Msa0508150:intron | 40.0% |
| !! | ACCATTTTTCTGTGCGATTG+GGG | - | chr3_4:55929628-55929647 | Msa0508150:intron | 40.0% |
| GCAGGAGAATAAGACAAAAG+GGG | + | chr3_4:55929693-55929712 | None:intergenic | 40.0% | |
| GAGCAGGAGAATAAGACAAA+AGG | + | chr3_4:55929695-55929714 | None:intergenic | 40.0% | |
| ACAGATCTTGCTGAATTCTC+CGG | + | chr3_4:55929779-55929798 | None:intergenic | 40.0% | |
| GAGAATTCAGCAAGATCTGT+CGG | - | chr3_4:55929779-55929798 | Msa0508150:intron | 40.0% | |
| GCAGGCCTGACATTATAATT+TGG | + | chr3_4:55929944-55929963 | None:intergenic | 40.0% | |
| GCAGGCCTGACATTATAATT+TGG | + | chr3_4:55929944-55929963 | None:intergenic | 40.0% | |
| CCTGCCATTCCAAATTACAA+CGG | - | chr3_4:55929986-55930005 | Msa0508150:intron | 40.0% | |
| ACCTCCGTTGTAATTTGGAA+TGG | + | chr3_4:55929993-55930012 | None:intergenic | 40.0% | |
| GAGTAACCTCCGTTGTAATT+TGG | + | chr3_4:55929998-55930017 | None:intergenic | 40.0% | |
| !! | TCACAGCGCCATTTTCAAAA+TGG | - | chr3_4:55930073-55930092 | Msa0508150:intron | 40.0% |
| !!! | CTTGCCTGCCATTTTGAAAA+TGG | + | chr3_4:55930084-55930103 | None:intergenic | 40.0% |
| ! | CATTTTCAAAATGGCAGGCA+AGG | - | chr3_4:55930082-55930101 | Msa0508150:intron | 40.0% |
| !! | TTGCTTTGAAGTTGCACCAT+TGG | + | chr3_4:55930182-55930201 | None:intergenic | 40.0% |
| AATGGTGCAACTTCAAAGCA+AGG | - | chr3_4:55930181-55930200 | Msa0508150:intron | 40.0% | |
| GTGTTAATGTGGAAGAGTCT+TGG | + | chr3_4:55928050-55928069 | None:intergenic | 40.0% | |
| CACAAACGAAAAGGCTCTTA+TGG | - | chr3_4:55928067-55928086 | Msa0508150:CDS | 40.0% | |
| TGTAAAAACTGCTAGGTGCT+TGG | - | chr3_4:55928292-55928311 | Msa0508150:CDS | 40.0% | |
| GATCTTTGTCTTCTGATGCA+TGG | - | chr3_4:55928405-55928424 | Msa0508150:intron | 40.0% | |
| TTCAGTGGTGGTAAAATTGC+AGG | + | chr3_4:55928461-55928480 | None:intergenic | 40.0% | |
| GGGTATATATCTTTCAGTGG+TGG | + | chr3_4:55928473-55928492 | None:intergenic | 40.0% | |
| GCTCATCCACCATATTGTAA+GGG | + | chr3_4:55928493-55928512 | None:intergenic | 40.0% | |
| AGCTCATCCACCATATTGTA+AGG | + | chr3_4:55928494-55928513 | None:intergenic | 40.0% | |
| CGGGAATTACATCAAGACAA+TGG | + | chr3_4:55928744-55928763 | None:intergenic | 40.0% | |
| GGTTCATATCAAACAAGTCC+AGG | - | chr3_4:55928824-55928843 | Msa0508150:intron | 40.0% | |
| GGCATTCTTATGTGCACATA+CGG | - | chr3_4:55928971-55928990 | Msa0508150:intron | 40.0% | |
| TGCTCTCTCCATTTAACATC+TGG | - | chr3_4:55929233-55929252 | Msa0508150:intron | 40.0% | |
| AACAGATTAGGGAAAGAGAC+AGG | + | chr3_4:55929305-55929324 | None:intergenic | 40.0% | |
| ! | AGTTTGCTCAGATCGATGAA+TGG | - | chr3_4:55929479-55929498 | Msa0508150:intron | 40.0% |
| GTTTGCTCAGATCGATGAAT+GGG | - | chr3_4:55929480-55929499 | Msa0508150:intron | 40.0% | |
| !! | TTTGCACTTATAGTGGACAG+TGG | - | chr3_4:55929518-55929537 | Msa0508150:intron | 40.0% |
| !! | TTGCACTTATAGTGGACAGT+GGG | - | chr3_4:55929519-55929538 | Msa0508150:intron | 40.0% |
| !! | ACCATTTTTCTGTGCGATTG+GGG | - | chr3_4:55929628-55929647 | Msa0508150:intron | 40.0% |
| GCAGGAGAATAAGACAAAAG+GGG | + | chr3_4:55929693-55929712 | None:intergenic | 40.0% | |
| GAGCAGGAGAATAAGACAAA+AGG | + | chr3_4:55929695-55929714 | None:intergenic | 40.0% | |
| ACAGATCTTGCTGAATTCTC+CGG | + | chr3_4:55929779-55929798 | None:intergenic | 40.0% | |
| GAGAATTCAGCAAGATCTGT+CGG | - | chr3_4:55929779-55929798 | Msa0508150:intron | 40.0% | |
| GCAGGCCTGACATTATAATT+TGG | + | chr3_4:55929944-55929963 | None:intergenic | 40.0% | |
| GCAGGCCTGACATTATAATT+TGG | + | chr3_4:55929944-55929963 | None:intergenic | 40.0% | |
| CCTGCCATTCCAAATTACAA+CGG | - | chr3_4:55929986-55930005 | Msa0508150:intron | 40.0% | |
| ACCTCCGTTGTAATTTGGAA+TGG | + | chr3_4:55929993-55930012 | None:intergenic | 40.0% | |
| GAGTAACCTCCGTTGTAATT+TGG | + | chr3_4:55929998-55930017 | None:intergenic | 40.0% | |
| !! | TCACAGCGCCATTTTCAAAA+TGG | - | chr3_4:55930073-55930092 | Msa0508150:intron | 40.0% |
| !!! | CTTGCCTGCCATTTTGAAAA+TGG | + | chr3_4:55930084-55930103 | None:intergenic | 40.0% |
| ! | CATTTTCAAAATGGCAGGCA+AGG | - | chr3_4:55930082-55930101 | Msa0508150:intron | 40.0% |
| !! | TTGCTTTGAAGTTGCACCAT+TGG | + | chr3_4:55930182-55930201 | None:intergenic | 40.0% |
| AATGGTGCAACTTCAAAGCA+AGG | - | chr3_4:55930181-55930200 | Msa0508150:intron | 40.0% | |
| !! | AATATGGTGGATGAGCTGAG+AGG | - | chr3_4:55928497-55928516 | Msa0508150:intron | 45.0% |
| TGTCTTGATGTAATTCCCGC+AGG | - | chr3_4:55928745-55928764 | Msa0508150:intron | 45.0% | |
| TGCTCTCTCCATTGAACATC+TGG | - | chr3_4:55928950-55928969 | Msa0508150:intron | 45.0% | |
| AACAGATTAGGGAGAGAGAC+AGG | + | chr3_4:55929022-55929041 | None:intergenic | 45.0% | |
| TCATCGATCTGAGCAAACTG+CGG | + | chr3_4:55929478-55929497 | None:intergenic | 45.0% | |
| AGTGCAAATTCCGATCTCTG+AGG | + | chr3_4:55929506-55929525 | None:intergenic | 45.0% | |
| TCCCCAATCGCACAGAAAAA+TGG | + | chr3_4:55929632-55929651 | None:intergenic | 45.0% | |
| ! | TGAGGATCCTTTTGAGCAAC+CGG | - | chr3_4:55929757-55929776 | Msa0508150:intron | 45.0% |
| GAATTCTCCGGTTGCTCAAA+AGG | + | chr3_4:55929767-55929786 | None:intergenic | 45.0% | |
| ATAAGACTCCACACATGTGC+TGG | + | chr3_4:55929905-55929924 | None:intergenic | 45.0% | |
| !! | ATGTGTGGAGTCTTATTGCC+AGG | - | chr3_4:55929909-55929928 | Msa0508150:intron | 45.0% |
| ! | ATAATTTGGAATGGCAGGCC+TGG | + | chr3_4:55929930-55929949 | None:intergenic | 45.0% |
| ! | CCGTTGTAATTTGGAATGGC+AGG | + | chr3_4:55929989-55930008 | None:intergenic | 45.0% |
| GCCATTCCAAATTACAACGG+AGG | - | chr3_4:55929989-55930008 | Msa0508150:intron | 45.0% | |
| GAAAATGGCGCTGTGACTTT+GGG | + | chr3_4:55930069-55930088 | None:intergenic | 45.0% | |
| TGAAAATGGCGCTGTGACTT+TGG | + | chr3_4:55930070-55930089 | None:intergenic | 45.0% | |
| !! | AGCGCCATTTTCAAAATGGC+AGG | - | chr3_4:55930077-55930096 | Msa0508150:intron | 45.0% |
| TTGCTTTGACGTTGAACCGT+TGG | + | chr3_4:55930116-55930135 | None:intergenic | 45.0% | |
| AACGGTTCAACGTCAAAGCA+AGG | - | chr3_4:55930115-55930134 | Msa0508150:intron | 45.0% | |
| AAGCAAGGAGCAAACTCCAA+CGG | - | chr3_4:55930130-55930149 | Msa0508150:intron | 45.0% | |
| ! | TGGATTTGAAGTTGCACCGT+TGG | + | chr3_4:55930149-55930168 | None:intergenic | 45.0% |
| AATCCAGAAGCAAGCTCCAA+TGG | - | chr3_4:55930163-55930182 | Msa0508150:intron | 45.0% | |
| TACTGTTGAAGTTGCACCGT+TGG | + | chr3_4:55930215-55930234 | None:intergenic | 45.0% | |
| ACCAAAGGCTCCAAATCCAA+TGG | - | chr3_4:55930276-55930295 | Msa0508150:CDS | 45.0% | |
| !! | AATATGGTGGATGAGCTGAG+AGG | - | chr3_4:55928497-55928516 | Msa0508150:intron | 45.0% |
| TGTCTTGATGTAATTCCCGC+AGG | - | chr3_4:55928745-55928764 | Msa0508150:intron | 45.0% | |
| TGCTCTCTCCATTGAACATC+TGG | - | chr3_4:55928950-55928969 | Msa0508150:intron | 45.0% | |
| AACAGATTAGGGAGAGAGAC+AGG | + | chr3_4:55929022-55929041 | None:intergenic | 45.0% | |
| TCATCGATCTGAGCAAACTG+CGG | + | chr3_4:55929478-55929497 | None:intergenic | 45.0% | |
| AGTGCAAATTCCGATCTCTG+AGG | + | chr3_4:55929506-55929525 | None:intergenic | 45.0% | |
| TCCCCAATCGCACAGAAAAA+TGG | + | chr3_4:55929632-55929651 | None:intergenic | 45.0% | |
| ! | TGAGGATCCTTTTGAGCAAC+CGG | - | chr3_4:55929757-55929776 | Msa0508150:intron | 45.0% |
| GAATTCTCCGGTTGCTCAAA+AGG | + | chr3_4:55929767-55929786 | None:intergenic | 45.0% | |
| ATAAGACTCCACACATGTGC+TGG | + | chr3_4:55929905-55929924 | None:intergenic | 45.0% | |
| !! | ATGTGTGGAGTCTTATTGCC+AGG | - | chr3_4:55929909-55929928 | Msa0508150:intron | 45.0% |
| ! | ATAATTTGGAATGGCAGGCC+TGG | + | chr3_4:55929930-55929949 | None:intergenic | 45.0% |
| ! | CCGTTGTAATTTGGAATGGC+AGG | + | chr3_4:55929989-55930008 | None:intergenic | 45.0% |
| GCCATTCCAAATTACAACGG+AGG | - | chr3_4:55929989-55930008 | Msa0508150:intron | 45.0% | |
| GAAAATGGCGCTGTGACTTT+GGG | + | chr3_4:55930069-55930088 | None:intergenic | 45.0% | |
| TGAAAATGGCGCTGTGACTT+TGG | + | chr3_4:55930070-55930089 | None:intergenic | 45.0% | |
| !! | AGCGCCATTTTCAAAATGGC+AGG | - | chr3_4:55930077-55930096 | Msa0508150:intron | 45.0% |
| TTGCTTTGACGTTGAACCGT+TGG | + | chr3_4:55930116-55930135 | None:intergenic | 45.0% | |
| AACGGTTCAACGTCAAAGCA+AGG | - | chr3_4:55930115-55930134 | Msa0508150:intron | 45.0% | |
| AAGCAAGGAGCAAACTCCAA+CGG | - | chr3_4:55930130-55930149 | Msa0508150:intron | 45.0% | |
| ! | TGGATTTGAAGTTGCACCGT+TGG | + | chr3_4:55930149-55930168 | None:intergenic | 45.0% |
| AATCCAGAAGCAAGCTCCAA+TGG | - | chr3_4:55930163-55930182 | Msa0508150:intron | 45.0% | |
| TACTGTTGAAGTTGCACCGT+TGG | + | chr3_4:55930215-55930234 | None:intergenic | 45.0% | |
| ACCAAAGGCTCCAAATCCAA+TGG | - | chr3_4:55930276-55930295 | Msa0508150:CDS | 45.0% | |
| AACCTGTGAGCTCAACCACT+TGG | - | chr3_4:55928260-55928279 | Msa0508150:CDS | 50.0% | |
| AACCAAGTGGTTGAGCTCAC+AGG | + | chr3_4:55928265-55928284 | None:intergenic | 50.0% | |
| ! | TGCATCAGCTCTAACACCTG+CGG | + | chr3_4:55928764-55928783 | None:intergenic | 50.0% |
| CCTGTTTATGTTGGCAGCAC+AGG | + | chr3_4:55928806-55928825 | None:intergenic | 50.0% | |
| CCTGTGCTGCCAACATAAAC+AGG | - | chr3_4:55928803-55928822 | Msa0508150:intron | 50.0% | |
| CATCGATCTGAGCAAACTGC+GGG | + | chr3_4:55929477-55929496 | None:intergenic | 50.0% | |
| GATGAATGGGCCTCAGAGAT+CGG | - | chr3_4:55929493-55929512 | Msa0508150:intron | 50.0% | |
| AAGCAAGGAGCAAGCTCCAA+CGG | - | chr3_4:55930196-55930215 | Msa0508150:CDS | 50.0% | |
| GTACCTGCTAAAGCACGTCA+AGG | - | chr3_4:55930232-55930251 | Msa0508150:CDS | 50.0% | |
| ! | GCCATTGGATTTGGAGCCTT+TGG | + | chr3_4:55930280-55930299 | None:intergenic | 50.0% |
| AACCTGTGAGCTCAACCACT+TGG | - | chr3_4:55928260-55928279 | Msa0508150:CDS | 50.0% | |
| AACCAAGTGGTTGAGCTCAC+AGG | + | chr3_4:55928265-55928284 | None:intergenic | 50.0% | |
| ! | TGCATCAGCTCTAACACCTG+CGG | + | chr3_4:55928764-55928783 | None:intergenic | 50.0% |
| CCTGTTTATGTTGGCAGCAC+AGG | + | chr3_4:55928806-55928825 | None:intergenic | 50.0% | |
| CCTGTGCTGCCAACATAAAC+AGG | - | chr3_4:55928803-55928822 | Msa0508150:intron | 50.0% | |
| CATCGATCTGAGCAAACTGC+GGG | + | chr3_4:55929477-55929496 | None:intergenic | 50.0% | |
| GATGAATGGGCCTCAGAGAT+CGG | - | chr3_4:55929493-55929512 | Msa0508150:intron | 50.0% | |
| AAGCAAGGAGCAAGCTCCAA+CGG | - | chr3_4:55930196-55930215 | Msa0508150:CDS | 50.0% | |
| GTACCTGCTAAAGCACGTCA+AGG | - | chr3_4:55930232-55930251 | Msa0508150:CDS | 50.0% | |
| ! | GCCATTGGATTTGGAGCCTT+TGG | + | chr3_4:55930280-55930299 | None:intergenic | 50.0% |
| ! | GCATCAGCTCTAACACCTGC+GGG | + | chr3_4:55928763-55928782 | None:intergenic | 55.0% |
| AGCTAGCACCAGCACATGTG+TGG | - | chr3_4:55929894-55929913 | Msa0508150:intron | 55.0% | |
| TCCAACTCATCCACAGCCAC+AGG | - | chr3_4:55930021-55930040 | Msa0508150:intron | 55.0% | |
| CCAACTCATCCACAGCCACA+GGG | - | chr3_4:55930022-55930041 | Msa0508150:intron | 55.0% | |
| CAACTCATCCACAGCCACAG+GGG | - | chr3_4:55930023-55930042 | Msa0508150:intron | 55.0% | |
| AGGCAAGGTGCAAGCTCCAA+CGG | - | chr3_4:55930097-55930116 | Msa0508150:intron | 55.0% | |
| ! | GCACCATTGGAGCTTGCTTC+TGG | + | chr3_4:55930169-55930188 | None:intergenic | 55.0% |
| GGACCTTGACGTGCTTTAGC+AGG | + | chr3_4:55930238-55930257 | None:intergenic | 55.0% | |
| ! | GCATCAGCTCTAACACCTGC+GGG | + | chr3_4:55928763-55928782 | None:intergenic | 55.0% |
| AGCTAGCACCAGCACATGTG+TGG | - | chr3_4:55929894-55929913 | Msa0508150:intron | 55.0% | |
| TCCAACTCATCCACAGCCAC+AGG | - | chr3_4:55930021-55930040 | Msa0508150:intron | 55.0% | |
| CCAACTCATCCACAGCCACA+GGG | - | chr3_4:55930022-55930041 | Msa0508150:intron | 55.0% | |
| CAACTCATCCACAGCCACAG+GGG | - | chr3_4:55930023-55930042 | Msa0508150:intron | 55.0% | |
| AGGCAAGGTGCAAGCTCCAA+CGG | - | chr3_4:55930097-55930116 | Msa0508150:intron | 55.0% | |
| ! | GCACCATTGGAGCTTGCTTC+TGG | + | chr3_4:55930169-55930188 | None:intergenic | 55.0% |
| GGACCTTGACGTGCTTTAGC+AGG | + | chr3_4:55930238-55930257 | None:intergenic | 55.0% | |
| CCCTGTGGCTGTGGATGAGT+TGG | + | chr3_4:55930025-55930044 | None:intergenic | 60.0% | |
| ATCCACAGCCACAGGGGCAA+AGG | - | chr3_4:55930029-55930048 | Msa0508150:intron | 60.0% | |
| TCCACAGCCACAGGGGCAAA+GGG | - | chr3_4:55930030-55930049 | Msa0508150:intron | 60.0% | |
| GGCGCTGTGACTTTGGGTGT+GGG | + | chr3_4:55930063-55930082 | None:intergenic | 60.0% | |
| TGGCGCTGTGACTTTGGGTG+TGG | + | chr3_4:55930064-55930083 | None:intergenic | 60.0% | |
| ACGTCAAGGTCCACAGCAGC+AGG | - | chr3_4:55930246-55930265 | Msa0508150:CDS | 60.0% | |
| AAGGTCCACAGCAGCAGGCA+TGG | - | chr3_4:55930251-55930270 | Msa0508150:CDS | 60.0% | |
| GCAGCAGGCATGGAGACCAA+AGG | - | chr3_4:55930261-55930280 | Msa0508150:CDS | 60.0% | |
| CCCTGTGGCTGTGGATGAGT+TGG | + | chr3_4:55930025-55930044 | None:intergenic | 60.0% | |
| ATCCACAGCCACAGGGGCAA+AGG | - | chr3_4:55930029-55930048 | Msa0508150:intron | 60.0% | |
| TCCACAGCCACAGGGGCAAA+GGG | - | chr3_4:55930030-55930049 | Msa0508150:intron | 60.0% | |
| GGCGCTGTGACTTTGGGTGT+GGG | + | chr3_4:55930063-55930082 | None:intergenic | 60.0% | |
| TGGCGCTGTGACTTTGGGTG+TGG | + | chr3_4:55930064-55930083 | None:intergenic | 60.0% | |
| ACGTCAAGGTCCACAGCAGC+AGG | - | chr3_4:55930246-55930265 | Msa0508150:CDS | 60.0% | |
| AAGGTCCACAGCAGCAGGCA+TGG | - | chr3_4:55930251-55930270 | Msa0508150:CDS | 60.0% | |
| GCAGCAGGCATGGAGACCAA+AGG | - | chr3_4:55930261-55930280 | Msa0508150:CDS | 60.0% | |
| CCACAGCCACAGGGGCAAAG+GGG | - | chr3_4:55930031-55930050 | Msa0508150:intron | 65.0% | |
| AACACGCCCCTTTGCCCCTG+TGG | + | chr3_4:55930040-55930059 | None:intergenic | 65.0% | |
| GGTCTCCATGCCTGCTGCTG+TGG | + | chr3_4:55930259-55930278 | None:intergenic | 65.0% | |
| CCACAGCCACAGGGGCAAAG+GGG | - | chr3_4:55930031-55930050 | Msa0508150:intron | 65.0% | |
| AACACGCCCCTTTGCCCCTG+TGG | + | chr3_4:55930040-55930059 | None:intergenic | 65.0% | |
| GGTCTCCATGCCTGCTGCTG+TGG | + | chr3_4:55930259-55930278 | None:intergenic | 65.0% | |
| CCCCTTTGCCCCTGTGGCTG+TGG | + | chr3_4:55930034-55930053 | None:intergenic | 70.0% | |
| CCCCTTTGCCCCTGTGGCTG+TGG | + | chr3_4:55930034-55930053 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 55927854 | 55930303 | 55927854 | ID=Msa0508150;Name=Msa0508150 |
| chr3_4 | mRNA | 55927854 | 55930303 | 55927854 | ID=Msa0508150-mRNA-1;Parent=Msa0508150;Name=Msa0508150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.8|1|1|5|0|322 |
| chr3_4 | exon | 55930196 | 55930303 | 55930196 | ID=Msa0508150-mRNA-1:exon:12554;Parent=Msa0508150-mRNA-1 |
| chr3_4 | exon | 55929639 | 55929708 | 55929639 | ID=Msa0508150-mRNA-1:exon:12553;Parent=Msa0508150-mRNA-1 |
| chr3_4 | exon | 55929260 | 55929390 | 55929260 | ID=Msa0508150-mRNA-1:exon:12552;Parent=Msa0508150-mRNA-1 |
| chr3_4 | exon | 55928566 | 55928676 | 55928566 | ID=Msa0508150-mRNA-1:exon:12551;Parent=Msa0508150-mRNA-1 |
| chr3_4 | exon | 55927854 | 55928402 | 55927854 | ID=Msa0508150-mRNA-1:exon:12550;Parent=Msa0508150-mRNA-1 |
| chr3_4 | CDS | 55930196 | 55930303 | 55930196 | ID=Msa0508150-mRNA-1:cds;Parent=Msa0508150-mRNA-1 |
| chr3_4 | CDS | 55929639 | 55929708 | 55929639 | ID=Msa0508150-mRNA-1:cds;Parent=Msa0508150-mRNA-1 |
| chr3_4 | CDS | 55929260 | 55929390 | 55929260 | ID=Msa0508150-mRNA-1:cds;Parent=Msa0508150-mRNA-1 |
| chr3_4 | CDS | 55928566 | 55928676 | 55928566 | ID=Msa0508150-mRNA-1:cds;Parent=Msa0508150-mRNA-1 |
| chr3_4 | CDS | 55927854 | 55928402 | 55927854 | ID=Msa0508150-mRNA-1:cds;Parent=Msa0508150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
