AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269480 MtrunA17_Chr2g0331991 98.734 711 8 1 1 710 1 711 0.0 1432
Msa1269480 MtrunA17_Chr4g0004211 59.322 708 204 13 2 707 32 657 0.0 791
Msa1269480 MtrunA17_Chr4g0034861 60.234 684 210 12 31 710 9 634 0.0 740
Msa1269480 MtrunA17_Chr3g0141921 31.026 419 201 12 298 708 123 461 7.53e-38 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269480 AT3G15940.2 62.209 688 246 7 32 708 12 696 0.0 810
Msa1269480 AT3G15940.1 62.209 688 246 7 32 708 12 696 0.0 810
Msa1269480 AT1G52420.1 60.347 691 242 12 24 708 5 669 0.0 800
Msa1269480 AT1G19710.1 31.296 409 190 15 305 703 134 461 5.26e-36 142
Msa1269480 AT1G75420.2 42.384 151 83 3 553 703 219 365 1.13e-22 101
Msa1269480 AT1G75420.3 42.384 151 83 3 553 703 278 424 1.34e-22 101
Msa1269480 AT1G75420.1 42.384 151 83 3 553 703 304 450 1.65e-22 102

Find 177 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTCTCGGAACGGATTC+TGG 0.131653 8_3:-2713415 Msa1269480:CDS
GATCTCCTGCTCTTCTTCTT+TGG 0.146647 8_3:+2716979 None:intergenic
AAGCAATAGCTGGCCCTTTC+CGG 0.189848 8_3:+2715221 None:intergenic
CTATTGGTTTGAGGAATTTC+TGG 0.194960 8_3:+2716883 None:intergenic
ACGACCTACCTGAGAGTTTA+TGG 0.200248 8_3:+2714711 None:intergenic
ATAATCCACCTTGTTACTTT+TGG 0.226187 8_3:+2714846 None:intergenic
AAGGAATGTGTATTTCTAAA+AGG 0.229381 8_3:-2717551 Msa1269480:five_prime_UTR
ATCTCCTGCTCTTCTTCTTT+GGG 0.236327 8_3:+2716980 None:intergenic
TAGCGAAACTATCTTCATTA+AGG 0.246450 8_3:-2717437 Msa1269480:CDS
CTCAACAGAAGATAGGATTT+TGG 0.248236 8_3:-2716830 Msa1269480:CDS
CAGCAATAGAGGTGAATTTC+AGG 0.300352 8_3:-2717466 Msa1269480:CDS
GTTCAAGATTGAAGCATTGT+AGG 0.311791 8_3:-2717598 Msa1269480:five_prime_UTR
GGGACTTTGCACGCCTTGTT+TGG 0.322335 8_3:-2716765 Msa1269480:CDS
AGCAATAGCTGGCCCTTTCC+GGG 0.327800 8_3:+2715222 None:intergenic
CCATTTGCTTCCTTGCCAAC+TGG 0.333918 8_3:+2713284 None:intergenic
AATGAGACGGTTAGAAATAA+AGG 0.341557 8_3:-2717081 Msa1269480:CDS
GCATCTACGCCGGTATTTCT+TGG 0.344521 8_3:+2717159 None:intergenic
GGCTGCTTCTAATTACCCTC+TGG 0.345486 8_3:-2717260 Msa1269480:CDS
AAAGTTCTCATTGGTTCTGT+TGG 0.360825 8_3:-2714871 Msa1269480:CDS
TCCACTCTCAATGTTGGAAT+TGG 0.362265 8_3:-2716695 Msa1269480:CDS
AGCAATGGCATTTGGTCTTC+CGG 0.371847 8_3:-2714061 Msa1269480:intron
ACAGACAAAGGAACAGTTGC+AGG 0.371888 8_3:+2715411 None:intergenic
GGGGATAGAAGGCAGGAAAA+AGG 0.376967 8_3:-2713263 Msa1269480:CDS
GACGGAGTGTTAAGTGTAGA+AGG 0.388857 8_3:+2715357 None:intergenic
GGATTACTCGTCGGTCCATT+TGG 0.392207 8_3:-2716853 Msa1269480:CDS
TTTGTCTGTTAATGATGAAC+TGG 0.392335 8_3:-2715397 Msa1269480:CDS
AGAATCGGTCCGAAAAGAAA+TGG 0.395205 8_3:-2715292 Msa1269480:CDS
TGGAGTCCTCAGAAACGTTC+CGG 0.397254 8_3:-2716805 Msa1269480:CDS
TTCCCTGCTGCACGTCCAAT+TGG 0.397411 8_3:+2713346 None:intergenic
ATTACCCTCTGGGCTTATCT+TGG 0.397833 8_3:-2717249 Msa1269480:CDS
TTGTTCTTAATTTCCACAAT+TGG 0.400041 8_3:+2716925 None:intergenic
CAGGGACTTGGAGAGACATT+TGG 0.403494 8_3:-2714099 Msa1269480:CDS
TGTTGAGGAAAGGAATATAA+TGG 0.407641 8_3:-2717496 Msa1269480:CDS
AGAGATTGTGGTTGCTGAGT+TGG 0.409917 8_3:+2718094 None:intergenic
ATCTTATGGGAGCAGGTTCT+CGG 0.410753 8_3:-2713427 Msa1269480:intron
ACTATAGAAGCAATGGCATT+TGG 0.411383 8_3:-2714069 Msa1269480:CDS
CATCCAATTGGACGTGCAGC+AGG 0.414855 8_3:-2713349 Msa1269480:CDS
CATGGTTCTAATCTAACTCT+TGG 0.415562 8_3:+2718186 None:intergenic
CCAGTTGGCAAGGAAGCAAA+TGG 0.419877 8_3:-2713284 Msa1269480:CDS
ATAGTTGAGAACAATGTTAC+AGG 0.420330 8_3:-2713379 Msa1269480:CDS
ACAGGTCTTCTTCATCCAAT+TGG 0.421060 8_3:-2713361 Msa1269480:CDS
GAGTAATCCATACGTACTAT+TGG 0.421436 8_3:+2716867 None:intergenic
TTGTTACCATTGTTGAAAGA+TGG 0.422929 8_3:-2715078 Msa1269480:CDS
GACGCAACCTGTGTTGTGGC+TGG 0.426129 8_3:+2714760 None:intergenic
AGAGCTAGCTAGTCACAAAT+TGG 0.429410 8_3:+2713075 None:intergenic
AAGGCTGATCTTGTAATTGC+TGG 0.429776 8_3:-2716535 Msa1269480:CDS
AATTTGTTGAGGTTATTGTT+AGG 0.429920 8_3:-2713204 Msa1269480:CDS
CATTTGGCTCAACAGAAGAT+AGG 0.430286 8_3:-2716837 Msa1269480:CDS
CTATCTTCTGTTGAGCCAAA+TGG 0.432141 8_3:+2716838 None:intergenic
AGGTTCTCGGAACGGATTCT+GGG 0.432623 8_3:-2713414 Msa1269480:CDS
CCTGCTTAAAGAATTGTTTG+AGG 0.438712 8_3:+2715035 None:intergenic
CAATCTCTCAAAGTTCTCAT+TGG 0.442203 8_3:-2714880 Msa1269480:CDS
CCATGACCCACCAAGCAACT+TGG 0.444595 8_3:+2715568 None:intergenic
AGGAAGCAAATGGGGATAGA+AGG 0.445303 8_3:-2713274 Msa1269480:CDS
AAATGTAGCCTTGGCAAAGA+AGG 0.452522 8_3:-2717040 Msa1269480:CDS
GGAGTCCTCAGAAACGTTCC+GGG 0.453244 8_3:-2716804 Msa1269480:CDS
CCTCAAACAATTCTTTAAGC+AGG 0.454282 8_3:-2715035 Msa1269480:intron
TTCCACGAGCTTTCCATGAC+CGG 0.456509 8_3:-2716721 Msa1269480:CDS
TTTCAGCTGTTGCACTTAGC+AGG 0.456577 8_3:-2716642 Msa1269480:CDS
GCTGCTTCTAATTACCCTCT+GGG 0.460105 8_3:-2717259 Msa1269480:CDS
AGTCGAACGCCGAGGAAAGA+AGG 0.460307 8_3:-2717333 Msa1269480:CDS
ATCAAATCACGGCGAAGACT+CGG 0.460731 8_3:+2717132 None:intergenic
AAGCTTCAAAACTGCAATGA+AGG 0.464293 8_3:-2716554 Msa1269480:CDS
CAAGCCCAAAGAAGAAGAGC+AGG 0.470250 8_3:-2716984 Msa1269480:CDS
CGCAACCTGTGTTGTGGCTG+GGG 0.470672 8_3:+2714762 None:intergenic
CAAAATGGTGAACAGGGACT+TGG 0.473978 8_3:-2714111 Msa1269480:intron
AGGAATGTGTATTTCTAAAA+GGG 0.476882 8_3:-2717550 Msa1269480:five_prime_UTR
GTTAGAAATAAAGGAGGGAT+TGG 0.478873 8_3:-2717072 Msa1269480:CDS
AACGTTCCGGGACATGTAAT+AGG 0.479019 8_3:-2716792 Msa1269480:CDS
AAGGCAGTTGTTGCGAGAAT+CGG 0.482088 8_3:-2715307 Msa1269480:CDS
CGGGTGCGAGCCAAGTTGCT+TGG 0.485763 8_3:-2715578 Msa1269480:CDS
CCAAGTTGCTTGGTGGGTCA+TGG 0.487031 8_3:-2715568 Msa1269480:CDS
CCCCTTCCTATTACATGTCC+CGG 0.487747 8_3:+2716786 None:intergenic
CTGATAAAATGATTGAGAAA+AGG 0.490392 8_3:-2715326 Msa1269480:CDS
GAACAATGATATAGAAGAGC+AGG 0.492309 8_3:-2716908 Msa1269480:CDS
TGCGAGCCAAGTTGCTTGGT+GGG 0.493421 8_3:-2715574 Msa1269480:CDS
AGTAGCATCAACCCCGGAAA+GGG 0.494447 8_3:-2715234 Msa1269480:CDS
AATCTAAACAATGGCAAAAG+TGG 0.495011 8_3:-2715467 Msa1269480:CDS
GTGCGAGCCAAGTTGCTTGG+TGG 0.495804 8_3:-2715575 Msa1269480:CDS
ATCACTTTCCTTCTTTGCCA+AGG 0.496573 8_3:+2717032 None:intergenic
TACGCCGGTATTTCTTGGCC+CGG 0.496951 8_3:+2717164 None:intergenic
GAATCGGTCCGAAAAGAAAT+GGG 0.498856 8_3:-2715291 Msa1269480:CDS
TGTTTATGCCATAAACTCTC+AGG 0.500207 8_3:-2714719 Msa1269480:intron
TCACAGAAGGAAGCAATTGT+TGG 0.502273 8_3:-2714926 Msa1269480:intron
TAGAACAATAAATGTAGCCT+TGG 0.503789 8_3:-2717049 Msa1269480:CDS
GAGTACTTCGACCGTTCAAA+GGG 0.504167 8_3:-2715534 Msa1269480:CDS
CCATACGTACTATTGGTTTG+AGG 0.507465 8_3:+2716874 None:intergenic
ATGGAGGAAAGCAGCAATAG+AGG 0.508277 8_3:-2717477 Msa1269480:CDS
CGGAGCTCCACTCTCAATGT+TGG 0.508341 8_3:-2716701 Msa1269480:CDS
CAGTTGGCAAGGAAGCAAAT+GGG 0.510086 8_3:-2713283 Msa1269480:CDS
ACGCAACCTGTGTTGTGGCT+GGG 0.511979 8_3:+2714761 None:intergenic
CTTATCAATATGTGCCCACC+TGG 0.518074 8_3:+2717212 None:intergenic
TGAGAGTGGAGCTCCGGTCA+TGG 0.520701 8_3:+2716708 None:intergenic
GGAACCGGGCCAAGAAATAC+CGG 0.521618 8_3:-2717168 Msa1269480:CDS
GAAACTATCTTCATTAAGGT+CGG 0.521851 8_3:-2717433 Msa1269480:CDS
GTGGGCACATATTGATAAGA+AGG 0.524950 8_3:-2717208 Msa1269480:CDS
AGAGTACTTCGACCGTTCAA+AGG 0.525221 8_3:-2715535 Msa1269480:CDS
GCTTTCTAGAAGACGAATCA+AGG 0.531246 8_3:-2716599 Msa1269480:CDS
GATGAACTGGCATTTGTAGC+CGG 0.532193 8_3:-2715384 Msa1269480:CDS
CCTCAAACCAATAGTACGTA+TGG 0.533615 8_3:-2716874 Msa1269480:CDS
AGATGGCAAAGTAGCTCTGA+AGG 0.536743 8_3:-2715061 Msa1269480:CDS
AACGAAGGAGAATTATTTCG+CGG 0.538604 8_3:+2717372 None:intergenic
AACGGTCGAAGTACTCTCTA+CGG 0.540457 8_3:+2715541 None:intergenic
AGCTGTTGCACTTAGCAGGA+AGG 0.547033 8_3:-2716638 Msa1269480:CDS
CAACATTGAGAGTGGAGCTC+CGG 0.548238 8_3:+2716702 None:intergenic
CTGATTCAAGAAGCAATAGC+TGG 0.552842 8_3:+2715211 None:intergenic
AGCAAATGGGGATAGAAGGC+AGG 0.552878 8_3:-2713270 Msa1269480:CDS
AAACTATCTTCATTAAGGTC+GGG 0.554864 8_3:-2717432 Msa1269480:CDS
GTTCAGCTGTATGTGCATCA+TGG 0.555139 8_3:-2716513 Msa1269480:CDS
GCCAATTCCAACATTGAGAG+TGG 0.556981 8_3:+2716694 None:intergenic
GGAGCAATCGTGTGTTGTTG+TGG 0.563046 8_3:-2717281 Msa1269480:CDS
GCTGTTGCACTTAGCAGGAA+GGG 0.563411 8_3:-2716637 Msa1269480:CDS
TCCGGGACATGTAATAGGAA+GGG 0.564524 8_3:-2716787 Msa1269480:CDS
CTTGCACAGAGTAAAGATGT+TGG 0.568045 8_3:-2715508 Msa1269480:CDS
GAATCATGATTGTTGAGGAA+AGG 0.568364 8_3:-2717506 Msa1269480:exon
CCGGGACATGTAATAGGAAG+GGG 0.570061 8_3:-2716786 Msa1269480:CDS
TTCAGCACTGTGAGAGATTG+TGG 0.571822 8_3:+2718082 None:intergenic
TTCCGGGACATGTAATAGGA+AGG 0.571893 8_3:-2716788 Msa1269480:CDS
TAAATCTTCTCGACCAAACA+AGG 0.573246 8_3:+2716752 None:intergenic
GCAACTTGGCTCGCACCCGC+CGG 0.574124 8_3:+2715582 None:intergenic
AAGTAGCATCAACCCCGGAA+AGG 0.577074 8_3:-2715235 Msa1269480:CDS
GGTTCTCGGAACGGATTCTG+GGG 0.577256 8_3:-2713413 Msa1269480:CDS
CTATCTTCATTAAGGTCGGG+TGG 0.578139 8_3:-2717429 Msa1269480:CDS
ACTTGGAGAGACATTTGGAC+GGG 0.580802 8_3:-2714094 Msa1269480:CDS
GTTAAGTGTAGAAGGAATGC+CGG 0.582910 8_3:+2715365 None:intergenic
GGGCTTGCTTTACGACGAGA+AGG 0.583830 8_3:+2717000 None:intergenic
CATGTCCCGGAACGTTTCTG+AGG 0.586620 8_3:+2716799 None:intergenic
CTCCGGTCATGGAAAGCTCG+TGG 0.587117 8_3:+2716719 None:intergenic
ATGGGAGCAGGTTCTCGGAA+CGG 0.587903 8_3:-2713422 Msa1269480:intron
TAAAGGAAGGCTTGTCTACA+CGG 0.590742 8_3:-2715125 Msa1269480:CDS
CTTGTCTGTTAATAATGAGA+CGG 0.594500 8_3:-2717094 Msa1269480:CDS
ATTGAATGATAGCACGTGCT+TGG 0.594648 8_3:+2718230 None:intergenic
GAGACGGTTAGAAATAAAGG+AGG 0.595028 8_3:-2717078 Msa1269480:CDS
GCTGTATGTGCATCATGGAT+TGG 0.595255 8_3:-2716508 Msa1269480:intron
ACTTTGCCATCTTTCAACAA+TGG 0.596363 8_3:+2715072 None:intergenic
TGGTAAGAAGAAACCAATTG+TGG 0.596946 8_3:-2716938 Msa1269480:CDS
AAGAGCAGGAGATCTTCGAA+AGG 0.599991 8_3:-2716970 Msa1269480:CDS
CCTCTGATAAAAGAAAATAG+AGG 0.600162 8_3:+2713052 None:intergenic
AAGTGCAACAGCTGAAACAG+TGG 0.603037 8_3:+2716648 None:intergenic
CTGAATCACAATCTAAACAA+TGG 0.603498 8_3:-2715476 Msa1269480:CDS
AAGACGAATCAAGGTGCTTG+AGG 0.605518 8_3:-2716590 Msa1269480:CDS
AAATTATCAAATATAAAGGA+AGG 0.606570 8_3:-2715138 Msa1269480:CDS
GCAATAGCTGGCCCTTTCCG+GGG 0.611467 8_3:+2715223 None:intergenic
CATGTATAAGAAATTTGTTG+AGG 0.611722 8_3:-2713215 Msa1269480:CDS
GTTGCACTTAGCAGGAAGGG+TGG 0.613077 8_3:-2716634 Msa1269480:CDS
GAGTTTAGTCTTCGAAACGA+AGG 0.614670 8_3:+2717357 None:intergenic
GACTTGGAGAGACATTTGGA+CGG 0.618285 8_3:-2714095 Msa1269480:CDS
AGTTCATCATTAACAGACAA+AGG 0.620196 8_3:+2715399 None:intergenic
ACGGGTGACTATAGAAGCAA+TGG 0.624266 8_3:-2714076 Msa1269480:CDS
AATACCAAGATAAGCCCAGA+GGG 0.624408 8_3:+2717245 None:intergenic
TGTGCAAGACACCCTTTGAA+CGG 0.624594 8_3:+2715523 None:intergenic
ATACATAATGTAGTGACTGC+TGG 0.625005 8_3:-2713109 Msa1269480:three_prime_UTR
AGTTGGCAAGGAAGCAAATG+GGG 0.626977 8_3:-2713282 Msa1269480:CDS
CGTCTCATTATTAACAGACA+AGG 0.627188 8_3:+2717095 None:intergenic
AATACAGAAGATTCTGTGCA+AGG 0.628515 8_3:+2713317 None:intergenic
AAAGAAGGAAAGTGATGATG+AGG 0.629203 8_3:-2717025 Msa1269480:CDS
ATCCAATTGGACGTGCAGCA+GGG 0.637876 8_3:-2713348 Msa1269480:CDS
TGAGGAAAGGAATATAATGG+AGG 0.639776 8_3:-2717493 Msa1269480:CDS
GTGGACCCCAGCCACAACAC+AGG 0.642970 8_3:-2714767 Msa1269480:CDS
AGACGGTTAGAAATAAAGGA+GGG 0.643625 8_3:-2717077 Msa1269480:CDS
CATCACTAGCAATCAAATCA+CGG 0.645910 8_3:+2717121 None:intergenic
ACAAAGGAACAGTTGCAGGT+TGG 0.651753 8_3:+2715415 None:intergenic
TGTTGGATCCAAAAGTAACA+AGG 0.656667 8_3:-2714854 Msa1269480:CDS
GCTGTTCTAAGAAACTGAGA+AGG 0.659200 8_3:+2714815 None:intergenic
TAATGACGCAACCTGTGTTG+TGG 0.660815 8_3:+2714756 None:intergenic
GGCACATATTGATAAGAAGG+AGG 0.663174 8_3:-2717205 Msa1269480:CDS
TCTTCGAAAGGTAAAGCTCG+TGG 0.669801 8_3:-2716958 Msa1269480:CDS
TCTCTAAGTAGCATCAACCC+CGG 0.669974 8_3:-2715240 Msa1269480:CDS
GTGAGAGTGAGAGAGAAACA+TGG 0.671462 8_3:+2718168 None:intergenic
GTTCTCGGAACGGATTCTGG+GGG 0.681613 8_3:-2713412 Msa1269480:CDS
AGTACGTATGGATTACTCGT+CGG 0.683292 8_3:-2716862 Msa1269480:CDS
ACTCGGATCAGCATCTACGC+CGG 0.684071 8_3:+2717149 None:intergenic
TGGATCCAAAAGTAACAAGG+TGG 0.684946 8_3:-2714851 Msa1269480:CDS
TAAACTCTAGTCGAACGCCG+AGG 0.690673 8_3:-2717341 Msa1269480:CDS
CGGGACATGTAATAGGAAGG+GGG 0.712818 8_3:-2716785 Msa1269480:CDS
TATATGAATCATGATTGTTG+AGG 0.718092 8_3:-2717511 Msa1269480:exon
AAATACCAAGATAAGCCCAG+AGG 0.740468 8_3:+2717244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATTTAATATGCTT+AGG - chr8_3:2715027-2715046 Msa1269480:intron 10.0%
!! GAAAAAATTATCAAATATAA+AGG - chr8_3:2716106-2716125 Msa1269480:intron 10.0%
!!! TTATTTTACTTTTTCTAATT+TGG - chr8_3:2716807-2716826 Msa1269480:CDS 10.0%
!!! TTGTTTTTTTAATTACTTGA+AGG - chr8_3:2713585-2713604 Msa1269480:intron 15.0%
!!! TATTTTAATATTTCCTTTTG+TGG + chr8_3:2715014-2715033 None:intergenic 15.0%
!! ATTTACAAGAGAAATATAAT+CGG + chr8_3:2715500-2715519 None:intergenic 15.0%
!! AAATTATCAAATATAAAGGA+AGG - chr8_3:2716110-2716129 Msa1269480:intron 15.0%
!! GAAGTAAATTATATAACTTA+TGG - chr8_3:2716249-2716268 Msa1269480:intron 15.0%
!!! ATGTAATAATGCTTTTATAT+AGG - chr8_3:2716617-2716636 Msa1269480:CDS 15.0%
!! AACAAAATCTATATATTTAG+AGG + chr8_3:2717626-2717645 None:intergenic 15.0%
!! TTCAATTGAAAAAGAAAAAA+AGG + chr8_3:2718105-2718124 None:intergenic 15.0%
!!! TTTTAATTACTTGAAGGATT+CGG - chr8_3:2713591-2713610 Msa1269480:intron 20.0%
!!! GACTATTTTTTAGTGAATTT+GGG - chr8_3:2713672-2713691 Msa1269480:intron 20.0%
!!! ACTATTTTTTAGTGAATTTG+GGG - chr8_3:2713673-2713692 Msa1269480:intron 20.0%
!!! AGTTTTAAATCAACATTATC+AGG - chr8_3:2713843-2713862 Msa1269480:intron 20.0%
!! TTCAATGTTGCATATTAATT+TGG + chr8_3:2714926-2714945 None:intergenic 20.0%
!! TAATGGTTTGAATGATTAAA+AGG + chr8_3:2715251-2715270 None:intergenic 20.0%
!! TAATTCTTTCCTTTATTGTT+TGG - chr8_3:2715417-2715436 Msa1269480:CDS 20.0%
!!! AATCATTTTATCAGTACTAA+AGG + chr8_3:2715916-2715935 None:intergenic 20.0%
!! TATTACATATATCGATATGA+AGG + chr8_3:2716605-2716624 None:intergenic 20.0%
!!! TCATTTAAAATATCTTTGCT+TGG + chr8_3:2716716-2716735 None:intergenic 20.0%
!!! TTTATTGGAATAGTATTGAA+TGG - chr8_3:2716955-2716974 Msa1269480:CDS 20.0%
! CTCAATCTTAGATAAAGAAA+TGG + chr8_3:2713249-2713268 None:intergenic 25.0%
! TTTAGCAAGTAAATTCATGT+GGG + chr8_3:2713563-2713582 None:intergenic 25.0%
!!! GGACTATTTTTTAGTGAATT+TGG - chr8_3:2713671-2713690 Msa1269480:intron 25.0%
!! AAGGAATGTGTATTTCTAAA+AGG - chr8_3:2713697-2713716 Msa1269480:intron 25.0%
!! AGGAATGTGTATTTCTAAAA+GGG - chr8_3:2713698-2713717 Msa1269480:intron 25.0%
! TATATGAATCATGATTGTTG+AGG - chr8_3:2713737-2713756 Msa1269480:intron 25.0%
! TTGTTCTTAATTTCCACAAT+TGG + chr8_3:2714326-2714345 None:intergenic 25.0%
! TTGTTACATTTCATTATGCA+TGG - chr8_3:2714774-2714793 Msa1269480:CDS 25.0%
! GTTTGAATGATTAAAAGGTT+AGG + chr8_3:2715246-2715265 None:intergenic 25.0%
! TTAAACTCATTCGTTTCTAA+TGG + chr8_3:2715268-2715287 None:intergenic 25.0%
! TAGAACTAGAAAATGGTATA+AGG + chr8_3:2715329-2715348 None:intergenic 25.0%
! TTAAGGTTAGAACTAGAAAA+TGG + chr8_3:2715336-2715355 None:intergenic 25.0%
! TCTAACCTTAATATATATCG+TGG - chr8_3:2715345-2715364 Msa1269480:CDS 25.0%
! ATCTACCACGATATATATTA+AGG + chr8_3:2715353-2715372 None:intergenic 25.0%
! TTTATTAAGACATGTAGAAG+AGG + chr8_3:2715599-2715618 None:intergenic 25.0%
! AAACGTTCAATATATTGTTC+TGG + chr8_3:2715645-2715664 None:intergenic 25.0%
!! ACAATATATTGAACGTTTTC+CGG - chr8_3:2715647-2715666 Msa1269480:intron 25.0%
!! ATTTTATCAGTACTAAAGGA+CGG + chr8_3:2715912-2715931 None:intergenic 25.0%
! CTGATAAAATGATTGAGAAA+AGG - chr8_3:2715922-2715941 Msa1269480:intron 25.0%
!!! AAAACTGATTTTGAAGTGTT+TGG + chr8_3:2716461-2716480 None:intergenic 25.0%
!! GTATTCTAAAAAAAGAACCA+AGG + chr8_3:2716870-2716889 None:intergenic 25.0%
! TCAGTATTCTTTATCAGTAA+AGG - chr8_3:2716906-2716925 Msa1269480:CDS 25.0%
! AGTAAAGGATAAGATTTACT+GGG - chr8_3:2716921-2716940 Msa1269480:CDS 25.0%
!!! ATAGTATTGAATGGAAGTTT+TGG - chr8_3:2716964-2716983 Msa1269480:CDS 25.0%
!!! ATAGTAATAGCTCTAAATGT+AGG + chr8_3:2717073-2717092 None:intergenic 25.0%
! ACAATAATCAAAAGGATCAA+AGG + chr8_3:2717526-2717545 None:intergenic 25.0%
! CTTCAGTAACAATAATCAAA+AGG + chr8_3:2717534-2717553 None:intergenic 25.0%
!!! TTGTTCTAAAACTAGGAAAA+AGG - chr8_3:2717666-2717685 Msa1269480:intron 25.0%
! TAATTTAGTGCCATAAATCT+AGG + chr8_3:2717694-2717713 None:intergenic 25.0%
! TTGTGTTCCAATTAATCTTA+TGG - chr8_3:2717807-2717826 Msa1269480:intron 25.0%
! TGTGTTCCAATTAATCTTAT+GGG - chr8_3:2717808-2717827 Msa1269480:intron 25.0%
!!! CATGTATAAGAAATTTGTTG+AGG - chr8_3:2718033-2718052 Msa1269480:intron 25.0%
!!! AATTTGTTGAGGTTATTGTT+AGG - chr8_3:2718044-2718063 Msa1269480:five_prime_UTR 25.0%
! AAAAAGGAATGATTATTGCA+GGG + chr8_3:2718089-2718108 None:intergenic 25.0%
! AAAAAAGGAATGATTATTGC+AGG + chr8_3:2718090-2718109 None:intergenic 25.0%
! TTGCATGTTCTTTTACTACT+TGG - chr8_3:2713316-2713335 Msa1269480:CDS 30.0%
TTTAGCAAGTTAATCCATGT+GGG + chr8_3:2713474-2713493 None:intergenic 30.0%
ATTTAGCAAGTTAATCCATG+TGG + chr8_3:2713475-2713494 None:intergenic 30.0%
CTTTAGCAAGTAAATTCATG+TGG + chr8_3:2713564-2713583 None:intergenic 30.0%
!! TTTTTAGTGAATTTGGGGAA+AGG - chr8_3:2713678-2713697 Msa1269480:intron 30.0%
TGTTGAGGAAAGGAATATAA+TGG - chr8_3:2713752-2713771 Msa1269480:intron 30.0%
TAGCGAAACTATCTTCATTA+AGG - chr8_3:2713811-2713830 Msa1269480:intron 30.0%
GAAACTATCTTCATTAAGGT+CGG - chr8_3:2713815-2713834 Msa1269480:intron 30.0%
AAACTATCTTCATTAAGGTC+GGG - chr8_3:2713816-2713835 Msa1269480:intron 30.0%
! AAAGTTTTTCCTTCTTTCCT+CGG + chr8_3:2713927-2713946 None:intergenic 30.0%
! AGGAAAGAAGGAAAAACTTT+TGG - chr8_3:2713927-2713946 Msa1269480:intron 30.0%
! AAAGAAGGAAAAACTTTTGG+TGG - chr8_3:2713930-2713949 Msa1269480:intron 30.0%
!!! TTGGTATTTTTTTTCAGTCC+AGG - chr8_3:2714018-2714037 Msa1269480:intron 30.0%
!!! TATTTTTTTTCAGTCCAGGT+GGG - chr8_3:2714022-2714041 Msa1269480:intron 30.0%
CTTGTCTGTTAATAATGAGA+CGG - chr8_3:2714154-2714173 Msa1269480:intron 30.0%
AATGAGACGGTTAGAAATAA+AGG - chr8_3:2714167-2714186 Msa1269480:intron 30.0%
TAGAACAATAAATGTAGCCT+TGG - chr8_3:2714199-2714218 Msa1269480:intron 30.0%
TAAGATACAAAAGTAGAGGA+AGG + chr8_3:2714871-2714890 None:intergenic 30.0%
! AGTCTAAGATACAAAAGTAG+AGG + chr8_3:2714875-2714894 None:intergenic 30.0%
!!! TAAATGCTTTTTCAACCTCA+CGG - chr8_3:2714898-2714917 Msa1269480:CDS 30.0%
AACTAACAAGCATATCTTTC+TGG + chr8_3:2714968-2714987 None:intergenic 30.0%
! ATAGAGCTAGTATGATAATG+TGG + chr8_3:2715102-2715121 None:intergenic 30.0%
!! CATACTAGCTCTATAACTAT+TGG - chr8_3:2715108-2715127 Msa1269480:CDS 30.0%
!! AGCTCTATAACTATTGGTTT+AGG - chr8_3:2715114-2715133 Msa1269480:CDS 30.0%
GACACAATACCAAACAATAA+AGG + chr8_3:2715429-2715448 None:intergenic 30.0%
! TGATTTTGCTTCTAATACAG+AGG - chr8_3:2715470-2715489 Msa1269480:CDS 30.0%
CTGAATCACAATCTAAACAA+TGG - chr8_3:2715772-2715791 Msa1269480:intron 30.0%
AATCTAAACAATGGCAAAAG+TGG - chr8_3:2715781-2715800 Msa1269480:intron 30.0%
AGTTCATCATTAACAGACAA+AGG + chr8_3:2715852-2715871 None:intergenic 30.0%
TTTGTCTGTTAATGATGAAC+TGG - chr8_3:2715851-2715870 Msa1269480:intron 30.0%
! CAGTTAATCCCATTTCTTTT+CGG + chr8_3:2715968-2715987 None:intergenic 30.0%
TTGTTACCATTGTTGAAAGA+TGG - chr8_3:2716170-2716189 Msa1269480:intron 30.0%
TTAAGCAGGTTACATTAAAC+TGG - chr8_3:2716227-2716246 Msa1269480:intron 30.0%
!!! ATAATCCACCTTGTTACTTT+TGG + chr8_3:2716405-2716424 None:intergenic 30.0%
! ACACTTCAAAATCAGTTTTG+TGG - chr8_3:2716462-2716481 Msa1269480:intron 30.0%
GGATGCATATACTCATAATT+AGG + chr8_3:2716656-2716675 None:intergenic 30.0%
! AAGACTTGAAGTTTTTACCT+TGG - chr8_3:2716850-2716869 Msa1269480:CDS 30.0%
TACTGAATATACAGACAAGA+AGG + chr8_3:2716892-2716911 None:intergenic 30.0%
CAGTAAAGGATAAGATTTAC+TGG - chr8_3:2716920-2716939 Msa1269480:CDS 30.0%
TACGAAAATATCCTCCAAAA+TGG - chr8_3:2717096-2717115 Msa1269480:CDS 30.0%
ACGAAAATATCCTCCAAAAT+GGG - chr8_3:2717097-2717116 Msa1269480:CDS 30.0%
ACTGTTGCTAACTAACAAAA+TGG - chr8_3:2717122-2717141 Msa1269480:CDS 30.0%
TAACTAACAAAATGGTGAAC+AGG - chr8_3:2717130-2717149 Msa1269480:CDS 30.0%
AACTAACAAAATGGTGAACA+GGG - chr8_3:2717131-2717150 Msa1269480:CDS 30.0%
ATTTGCATGAGATAAACAAG+AGG + chr8_3:2717233-2717252 None:intergenic 30.0%
!! TTTTATTTGAGTGTCACACT+TGG - chr8_3:2717258-2717277 Msa1269480:CDS 30.0%
TTTATTTGAGTGTCACACTT+GGG - chr8_3:2717259-2717278 Msa1269480:CDS 30.0%
! ACTGTTTTCGTAAGCTATAT+TGG - chr8_3:2717377-2717396 Msa1269480:CDS 30.0%
! TTGTGGTAGTAAGTTGAAAA+CGG - chr8_3:2717405-2717424 Msa1269480:CDS 30.0%
!! TTGTCAGTTGTTCTAAAACT+AGG - chr8_3:2717659-2717678 Msa1269480:intron 30.0%
TCACTCATTCATTTACATTC+AGG + chr8_3:2717781-2717800 None:intergenic 30.0%
ATAGTTGAGAACAATGTTAC+AGG - chr8_3:2717869-2717888 Msa1269480:intron 30.0%
GTATTTGCTTAAAAACCAGT+TGG - chr8_3:2717949-2717968 Msa1269480:intron 30.0%
CCTCTGATAAAAGAAAATAG+AGG + chr8_3:2718199-2718218 None:intergenic 30.0%
! CCTCTATTTTCTTTTATCAG+AGG - chr8_3:2718196-2718215 Msa1269480:five_prime_UTR 30.0%
GGGAAAAACTATTGATACTT+TGG + chr8_3:2718303-2718322 None:intergenic 30.0%
!! CATGGTTCTAATCTAACTCT+TGG + chr8_3:2713065-2713084 None:intergenic 35.0%
TGTTAAGAATGATACCCACA+TGG - chr8_3:2713457-2713476 Msa1269480:intron 35.0%
!! GTTCAAGATTGAAGCATTGT+AGG - chr8_3:2713650-2713669 Msa1269480:intron 35.0%
GAATCATGATTGTTGAGGAA+AGG - chr8_3:2713742-2713761 Msa1269480:intron 35.0%
TGAGGAAAGGAATATAATGG+AGG - chr8_3:2713755-2713774 Msa1269480:intron 35.0%
AACGAAGGAGAATTATTTCG+CGG + chr8_3:2713879-2713898 None:intergenic 35.0%
!! TTGGTGGTTTTCTGTTGTTT+CGG - chr8_3:2713946-2713965 Msa1269480:intron 35.0%
!!! GTATTTTTTTTCAGTCCAGG+TGG - chr8_3:2714021-2714040 Msa1269480:intron 35.0%
! GATAAGAAGGAGGAATTTTC+TGG - chr8_3:2714053-2714072 Msa1269480:intron 35.0%
CATCACTAGCAATCAAATCA+CGG + chr8_3:2714130-2714149 None:intergenic 35.0%
CGTCTCATTATTAACAGACA+AGG + chr8_3:2714156-2714175 None:intergenic 35.0%
AGACGGTTAGAAATAAAGGA+GGG - chr8_3:2714171-2714190 Msa1269480:intron 35.0%
GTTAGAAATAAAGGAGGGAT+TGG - chr8_3:2714176-2714195 Msa1269480:intron 35.0%
! AAAGAAGGAAAGTGATGATG+AGG - chr8_3:2714223-2714242 Msa1269480:intron 35.0%
TGGTAAGAAGAAACCAATTG+TGG - chr8_3:2714310-2714329 Msa1269480:intron 35.0%
GAACAATGATATAGAAGAGC+AGG - chr8_3:2714340-2714359 Msa1269480:intron 35.0%
!! CTATTGGTTTGAGGAATTTC+TGG + chr8_3:2714368-2714387 None:intergenic 35.0%
GAGTAATCCATACGTACTAT+TGG + chr8_3:2714384-2714403 None:intergenic 35.0%
! CTCAACAGAAGATAGGATTT+TGG - chr8_3:2714418-2714437 Msa1269480:intron 35.0%
!! CAGAAGATAGGATTTTGGAA+TGG - chr8_3:2714423-2714442 Msa1269480:intron 35.0%
TAAATCTTCTCGACCAAACA+AGG + chr8_3:2714499-2714518 None:intergenic 35.0%
AAGCTTCAAAACTGCAATGA+AGG - chr8_3:2714694-2714713 Msa1269480:intron 35.0%
AAAGTAGAGGAAGGAAAAGA+TGG + chr8_3:2714862-2714881 None:intergenic 35.0%
GATATTGTAGCTACCACAAA+AGG - chr8_3:2714998-2715017 Msa1269480:intron 35.0%
! TTTTGCAATGTTGCAATGTC+CGG + chr8_3:2715070-2715089 None:intergenic 35.0%
!!! GACACTTGAGTTTTGAAGTA+TGG + chr8_3:2715160-2715179 None:intergenic 35.0%
AACTCAAGTGTCTCAGTAAA+TGG - chr8_3:2715168-2715187 Msa1269480:CDS 35.0%
ATTGTTTGGTATTGTGTCCA+TGG - chr8_3:2715431-2715450 Msa1269480:CDS 35.0%
AGTAACAGCTAAACAATCCA+TGG + chr8_3:2715451-2715470 None:intergenic 35.0%
CTGGAGACATAAGAAAACAA+AGG + chr8_3:2715626-2715645 None:intergenic 35.0%
! ATATATTGAACGTTTTCCGG+CGG - chr8_3:2715650-2715669 Msa1269480:intron 35.0%
ACTTTGCCATCTTTCAACAA+TGG + chr8_3:2716179-2716198 None:intergenic 35.0%
CCTGCTTAAAGAATTGTTTG+AGG + chr8_3:2716216-2716235 None:intergenic 35.0%
CCTCAAACAATTCTTTAAGC+AGG - chr8_3:2716213-2716232 Msa1269480:intron 35.0%
TGAACTTTGACAATCACAGA+AGG - chr8_3:2716309-2716328 Msa1269480:intron 35.0%
CAATCTCTCAAAGTTCTCAT+TGG - chr8_3:2716368-2716387 Msa1269480:intron 35.0%
!! AAAGTTCTCATTGGTTCTGT+TGG - chr8_3:2716377-2716396 Msa1269480:intron 35.0%
TGTTGGATCCAAAAGTAACA+AGG - chr8_3:2716394-2716413 Msa1269480:intron 35.0%
TGTTTATGCCATAAACTCTC+AGG - chr8_3:2716529-2716548 Msa1269480:CDS 35.0%
ACGAAACTGTTCAATCATGT+TGG - chr8_3:2716735-2716754 Msa1269480:CDS 35.0%
! TTAGCAACAGTTTCCCATTT+TGG + chr8_3:2717113-2717132 None:intergenic 35.0%
ACTATAGAAGCAATGGCATT+TGG - chr8_3:2717179-2717198 Msa1269480:CDS 35.0%
AAGCTATATTGGAAAGCTTG+TGG - chr8_3:2717388-2717407 Msa1269480:CDS 35.0%
CTACTAACATTCGAACTTGT+GGG + chr8_3:2717474-2717493 None:intergenic 35.0%
TCTACTAACATTCGAACTTG+TGG + chr8_3:2717475-2717494 None:intergenic 35.0%
TCAAATGATCCAATCCAAAC+AGG - chr8_3:2717500-2717519 Msa1269480:CDS 35.0%
! TGTGCCTTTCTTTCAGTTTT+AGG + chr8_3:2717583-2717602 None:intergenic 35.0%
TATTTAGAGGCAACCACTAT+CGG + chr8_3:2717613-2717632 None:intergenic 35.0%
GAAAAAGGCTCCTAGATTTA+TGG - chr8_3:2717681-2717700 Msa1269480:intron 35.0%
AATACAGAAGATTCTGTGCA+AGG + chr8_3:2717934-2717953 None:intergenic 35.0%
ATACATAATGTAGTGACTGC+TGG - chr8_3:2718139-2718158 Msa1269480:five_prime_UTR 35.0%
ATTGAATGATAGCACGTGCT+TGG + chr8_3:2713021-2713040 None:intergenic 40.0%
CAGCAATAGAGGTGAATTTC+AGG - chr8_3:2713782-2713801 Msa1269480:intron 40.0%
! GAGTTTAGTCTTCGAAACGA+AGG + chr8_3:2713894-2713913 None:intergenic 40.0%
AATACCAAGATAAGCCCAGA+GGG + chr8_3:2714006-2714025 None:intergenic 40.0%
AAATACCAAGATAAGCCCAG+AGG + chr8_3:2714007-2714026 None:intergenic 40.0%
GTGGGCACATATTGATAAGA+AGG - chr8_3:2714040-2714059 Msa1269480:intron 40.0%
GGCACATATTGATAAGAAGG+AGG - chr8_3:2714043-2714062 Msa1269480:intron 40.0%
!!! AAGGAGGAATTTTCTGGCTT+TGG - chr8_3:2714059-2714078 Msa1269480:intron 40.0%
!!! GAATTTTCTGGCTTTGGAAC+CGG - chr8_3:2714065-2714084 Msa1269480:CDS 40.0%
!!! AATTTTCTGGCTTTGGAACC+GGG - chr8_3:2714066-2714085 Msa1269480:CDS 40.0%
GAGACGGTTAGAAATAAAGG+AGG - chr8_3:2714170-2714189 Msa1269480:intron 40.0%
! AAATGTAGCCTTGGCAAAGA+AGG - chr8_3:2714208-2714227 Msa1269480:intron 40.0%
ATCACTTTCCTTCTTTGCCA+AGG + chr8_3:2714219-2714238 None:intergenic 40.0%
ATCTCCTGCTCTTCTTCTTT+GGG + chr8_3:2714271-2714290 None:intergenic 40.0%
!! CCATACGTACTATTGGTTTG+AGG + chr8_3:2714377-2714396 None:intergenic 40.0%
CCTCAAACCAATAGTACGTA+TGG - chr8_3:2714374-2714393 Msa1269480:intron 40.0%
! AGTACGTATGGATTACTCGT+CGG - chr8_3:2714386-2714405 Msa1269480:intron 40.0%
CTATCTTCTGTTGAGCCAAA+TGG + chr8_3:2714413-2714432 None:intergenic 40.0%
! CATTTGGCTCAACAGAAGAT+AGG - chr8_3:2714411-2714430 Msa1269480:intron 40.0%
TCCACTCTCAATGTTGGAAT+TGG - chr8_3:2714553-2714572 Msa1269480:intron 40.0%
! GCTTTCTAGAAGACGAATCA+AGG - chr8_3:2714649-2714668 Msa1269480:intron 40.0%
AAGGCTGATCTTGTAATTGC+TGG - chr8_3:2714713-2714732 Msa1269480:intron 40.0%
! CATATTAATTTGGCACCGTG+AGG + chr8_3:2714916-2714935 None:intergenic 40.0%
GGACATTGCAACATTGCAAA+AGG - chr8_3:2715069-2715088 Msa1269480:CDS 40.0%
! TGAAGTATGGCATGCTTTTG+TGG + chr8_3:2715147-2715166 None:intergenic 40.0%
TCAGTAAATGGCACCAACTT+TGG - chr8_3:2715180-2715199 Msa1269480:CDS 40.0%
GTATGTTGAGGATCCAAAGT+TGG + chr8_3:2715196-2715215 None:intergenic 40.0%
GCAGGAATATAGGTATGTTG+AGG + chr8_3:2715208-2715227 None:intergenic 40.0%
GTGCATATGTGCAGGAATAT+AGG + chr8_3:2715218-2715237 None:intergenic 40.0%
! TATATTGAACGTTTTCCGGC+GGG - chr8_3:2715651-2715670 Msa1269480:intron 40.0%
CTTGCACAGAGTAAAGATGT+TGG - chr8_3:2715740-2715759 Msa1269480:intron 40.0%
GTTAAGTGTAGAAGGAATGC+CGG + chr8_3:2715886-2715905 None:intergenic 40.0%
AGAATCGGTCCGAAAAGAAA+TGG - chr8_3:2715956-2715975 Msa1269480:intron 40.0%
GAATCGGTCCGAAAAGAAAT+GGG - chr8_3:2715957-2715976 Msa1269480:intron 40.0%
CTGATTCAAGAAGCAATAGC+TGG + chr8_3:2716040-2716059 None:intergenic 40.0%
TAAAGGAAGGCTTGTCTACA+CGG - chr8_3:2716123-2716142 Msa1269480:intron 40.0%
TCACAGAAGGAAGCAATTGT+TGG - chr8_3:2716322-2716341 Msa1269480:intron 40.0%
TGGATCCAAAAGTAACAAGG+TGG - chr8_3:2716397-2716416 Msa1269480:intron 40.0%
!! GCTGTTCTAAGAAACTGAGA+AGG + chr8_3:2716436-2716455 None:intergenic 40.0%
TATGCCATAAACTCTCAGGT+AGG - chr8_3:2716533-2716552 Msa1269480:CDS 40.0%
GGGCAAAGTAGATTCATAAG+TGG + chr8_3:2716677-2716696 None:intergenic 40.0%
TTGGAGCTATGTGAATGTCA+GGG + chr8_3:2716697-2716716 None:intergenic 40.0%
CTCTAAATGTAGGTAACAGC+TGG + chr8_3:2717063-2717082 None:intergenic 40.0%
AAGCAAACTAGCAGTCATAC+CGG + chr8_3:2717209-2717228 None:intergenic 40.0%
AAAAGGATCAAAGGCCTGTT+TGG + chr8_3:2717517-2717536 None:intergenic 40.0%
!!! CCTTTCTTTCAGTTTTAGGC+TGG + chr8_3:2717579-2717598 None:intergenic 40.0%
CCAGCCTAAAACTGAAAGAA+AGG - chr8_3:2717576-2717595 Msa1269480:five_prime_UTR 40.0%
CCTGCTCCCATAAGATTAAT+TGG + chr8_3:2717817-2717836 None:intergenic 40.0%
CCAATTAATCTTATGGGAGC+AGG - chr8_3:2717814-2717833 Msa1269480:intron 40.0%
ACAGGTCTTCTTCATCCAAT+TGG - chr8_3:2717887-2717906 Msa1269480:intron 40.0%
TGCTTAAAAACCAGTTGGCA+AGG - chr8_3:2717954-2717973 Msa1269480:intron 40.0%
AGAGCTAGCTAGTCACAAAT+TGG + chr8_3:2718176-2718195 None:intergenic 40.0%
GTGAGAGTGAGAGAGAAACA+TGG + chr8_3:2713083-2713102 None:intergenic 45.0%
AGAGATTGTGGTTGCTGAGT+TGG + chr8_3:2713157-2713176 None:intergenic 45.0%
TTCAGCACTGTGAGAGATTG+TGG + chr8_3:2713169-2713188 None:intergenic 45.0%
ATGGAGGAAAGCAGCAATAG+AGG - chr8_3:2713771-2713790 Msa1269480:intron 45.0%
CTATCTTCATTAAGGTCGGG+TGG - chr8_3:2713819-2713838 Msa1269480:intron 45.0%
GCTGCTTCTAATTACCCTCT+GGG - chr8_3:2713989-2714008 Msa1269480:intron 45.0%
ATTACCCTCTGGGCTTATCT+TGG - chr8_3:2713999-2714018 Msa1269480:intron 45.0%
CTTATCAATATGTGCCCACC+TGG + chr8_3:2714039-2714058 None:intergenic 45.0%
ATCAAATCACGGCGAAGACT+CGG + chr8_3:2714119-2714138 None:intergenic 45.0%
GATCTCCTGCTCTTCTTCTT+TGG + chr8_3:2714272-2714291 None:intergenic 45.0%
AAGAGCAGGAGATCTTCGAA+AGG - chr8_3:2714278-2714297 Msa1269480:intron 45.0%
TCTTCGAAAGGTAAAGCTCG+TGG - chr8_3:2714290-2714309 Msa1269480:intron 45.0%
AACGTTCCGGGACATGTAAT+AGG - chr8_3:2714456-2714475 Msa1269480:intron 45.0%
TTCCGGGACATGTAATAGGA+AGG - chr8_3:2714460-2714479 Msa1269480:intron 45.0%
TCCGGGACATGTAATAGGAA+GGG - chr8_3:2714461-2714480 Msa1269480:intron 45.0%
GCCAATTCCAACATTGAGAG+TGG + chr8_3:2714557-2714576 None:intergenic 45.0%
AAGTGCAACAGCTGAAACAG+TGG + chr8_3:2714603-2714622 None:intergenic 45.0%
TTTCAGCTGTTGCACTTAGC+AGG - chr8_3:2714606-2714625 Msa1269480:intron 45.0%
! AAGACGAATCAAGGTGCTTG+AGG - chr8_3:2714658-2714677 Msa1269480:intron 45.0%
GTTCAGCTGTATGTGCATCA+TGG - chr8_3:2714735-2714754 Msa1269480:CDS 45.0%
GCTGTATGTGCATCATGGAT+TGG - chr8_3:2714740-2714759 Msa1269480:CDS 45.0%
CAATGTCCGGTCAAAAGACT+AGG + chr8_3:2715057-2715076 None:intergenic 45.0%
AGGAGTTTGTGCATATGTGC+AGG + chr8_3:2715226-2715245 None:intergenic 45.0%
! AACGGTCGAAGTACTCTCTA+CGG + chr8_3:2715710-2715729 None:intergenic 45.0%
! AGAGTACTTCGACCGTTCAA+AGG - chr8_3:2715713-2715732 Msa1269480:intron 45.0%
GAGTACTTCGACCGTTCAAA+GGG - chr8_3:2715714-2715733 Msa1269480:intron 45.0%
TGTGCAAGACACCCTTTGAA+CGG + chr8_3:2715728-2715747 None:intergenic 45.0%
ACAAAGGAACAGTTGCAGGT+TGG + chr8_3:2715836-2715855 None:intergenic 45.0%
ACAGACAAAGGAACAGTTGC+AGG + chr8_3:2715840-2715859 None:intergenic 45.0%
GATGAACTGGCATTTGTAGC+CGG - chr8_3:2715864-2715883 Msa1269480:intron 45.0%
! GACGGAGTGTTAAGTGTAGA+AGG + chr8_3:2715894-2715913 None:intergenic 45.0%
AAGGCAGTTGTTGCGAGAAT+CGG - chr8_3:2715941-2715960 Msa1269480:intron 45.0%
TCTCTAAGTAGCATCAACCC+CGG - chr8_3:2716008-2716027 Msa1269480:intron 45.0%
!! AGATGGCAAAGTAGCTCTGA+AGG - chr8_3:2716187-2716206 Msa1269480:intron 45.0%
TAATGACGCAACCTGTGTTG+TGG + chr8_3:2716495-2716514 None:intergenic 45.0%
ACGACCTACCTGAGAGTTTA+TGG + chr8_3:2716540-2716559 None:intergenic 45.0%
CTTGGAGCTATGTGAATGTC+AGG + chr8_3:2716698-2716717 None:intergenic 45.0%
! GCAACAGTTTCCCATTTTGG+AGG + chr8_3:2717110-2717129 None:intergenic 45.0%
CAAAATGGTGAACAGGGACT+TGG - chr8_3:2717137-2717156 Msa1269480:CDS 45.0%
GACTTGGAGAGACATTTGGA+CGG - chr8_3:2717153-2717172 Msa1269480:CDS 45.0%
ACTTGGAGAGACATTTGGAC+GGG - chr8_3:2717154-2717173 Msa1269480:CDS 45.0%
ACGGGTGACTATAGAAGCAA+TGG - chr8_3:2717172-2717191 Msa1269480:CDS 45.0%
! AGCAATGGCATTTGGTCTTC+CGG - chr8_3:2717187-2717206 Msa1269480:CDS 45.0%
TTCGAACTTGTGGGACTGTT+TGG + chr8_3:2717465-2717484 None:intergenic 45.0%
GATCAAAGGCCTGTTTGGAT+TGG + chr8_3:2717512-2717531 None:intergenic 45.0%
ATCTTATGGGAGCAGGTTCT+CGG - chr8_3:2717821-2717840 Msa1269480:intron 45.0%
CAGTTGGCAAGGAAGCAAAT+GGG - chr8_3:2717965-2717984 Msa1269480:intron 45.0%
AGTTGGCAAGGAAGCAAATG+GGG - chr8_3:2717966-2717985 Msa1269480:intron 45.0%
AGGAAGCAAATGGGGATAGA+AGG - chr8_3:2717974-2717993 Msa1269480:intron 45.0%
GATAGAAGGCAGGAAAAAGG+TGG - chr8_3:2717988-2718007 Msa1269480:intron 45.0%
!!! AAATATTTTTTAATTTTCAA+TGG + chr8_3:2716999-2717018 None:intergenic 5.0%
TAAACTCTAGTCGAACGCCG+AGG - chr8_3:2713907-2713926 Msa1269480:intron 50.0%
! GGAGCAATCGTGTGTTGTTG+TGG - chr8_3:2713967-2713986 Msa1269480:intron 50.0%
GGCTGCTTCTAATTACCCTC+TGG - chr8_3:2713988-2714007 Msa1269480:intron 50.0%
GCATCTACGCCGGTATTTCT+TGG + chr8_3:2714092-2714111 None:intergenic 50.0%
CAAGCCCAAAGAAGAAGAGC+AGG - chr8_3:2714264-2714283 Msa1269480:intron 50.0%
GGATTACTCGTCGGTCCATT+TGG - chr8_3:2714395-2714414 Msa1269480:intron 50.0%
TGGAGTCCTCAGAAACGTTC+CGG - chr8_3:2714443-2714462 Msa1269480:intron 50.0%
CCCCTTCCTATTACATGTCC+CGG + chr8_3:2714465-2714484 None:intergenic 50.0%
CCGGGACATGTAATAGGAAG+GGG - chr8_3:2714462-2714481 Msa1269480:intron 50.0%
CGGGACATGTAATAGGAAGG+GGG - chr8_3:2714463-2714482 Msa1269480:intron 50.0%
TTCCACGAGCTTTCCATGAC+CGG - chr8_3:2714527-2714546 Msa1269480:intron 50.0%
CAACATTGAGAGTGGAGCTC+CGG + chr8_3:2714549-2714568 None:intergenic 50.0%
! GCAACAGAGCTTTTGAGCTG+TGG - chr8_3:2714575-2714594 Msa1269480:intron 50.0%
AGCTGTTGCACTTAGCAGGA+AGG - chr8_3:2714610-2714629 Msa1269480:intron 50.0%
GCTGTTGCACTTAGCAGGAA+GGG - chr8_3:2714611-2714630 Msa1269480:intron 50.0%
!! GGACGACCTAGTCTTTTGAC+CGG - chr8_3:2715048-2715067 Msa1269480:CDS 50.0%
AAGTAGCATCAACCCCGGAA+AGG - chr8_3:2716013-2716032 Msa1269480:intron 50.0%
AGTAGCATCAACCCCGGAAA+GGG - chr8_3:2716014-2716033 Msa1269480:intron 50.0%
AAGCAATAGCTGGCCCTTTC+CGG + chr8_3:2716030-2716049 None:intergenic 50.0%
CAGGGACTTGGAGAGACATT+TGG - chr8_3:2717149-2717168 Msa1269480:CDS 50.0%
TAGAGGCAACCACTATCGGA+AGG + chr8_3:2717609-2717628 None:intergenic 50.0%
! AGGTTCTCGGAACGGATTCT+GGG - chr8_3:2717834-2717853 Msa1269480:intron 50.0%
ATCCAATTGGACGTGCAGCA+GGG - chr8_3:2717900-2717919 Msa1269480:intron 50.0%
CCATTTGCTTCCTTGCCAAC+TGG + chr8_3:2717967-2717986 None:intergenic 50.0%
CCAGTTGGCAAGGAAGCAAA+TGG - chr8_3:2717964-2717983 Msa1269480:intron 50.0%
AGCAAATGGGGATAGAAGGC+AGG - chr8_3:2717978-2717997 Msa1269480:intron 50.0%
GGGGATAGAAGGCAGGAAAA+AGG - chr8_3:2717985-2718004 Msa1269480:intron 50.0%
AGTCGAACGCCGAGGAAAGA+AGG - chr8_3:2713915-2713934 Msa1269480:intron 55.0%
GGAACCGGGCCAAGAAATAC+CGG - chr8_3:2714080-2714099 Msa1269480:CDS 55.0%
TACGCCGGTATTTCTTGGCC+CGG + chr8_3:2714087-2714106 None:intergenic 55.0%
ACTCGGATCAGCATCTACGC+CGG + chr8_3:2714102-2714121 None:intergenic 55.0%
! GGGCTTGCTTTACGACGAGA+AGG + chr8_3:2714251-2714270 None:intergenic 55.0%
GGAGTCCTCAGAAACGTTCC+GGG - chr8_3:2714444-2714463 Msa1269480:intron 55.0%
CATGTCCCGGAACGTTTCTG+AGG + chr8_3:2714452-2714471 None:intergenic 55.0%
! GGGACTTTGCACGCCTTGTT+TGG - chr8_3:2714483-2714502 Msa1269480:intron 55.0%
CGGAGCTCCACTCTCAATGT+TGG - chr8_3:2714547-2714566 Msa1269480:intron 55.0%
GTTGCACTTAGCAGGAAGGG+TGG - chr8_3:2714614-2714633 Msa1269480:intron 55.0%
TGCGAGCCAAGTTGCTTGGT+GGG - chr8_3:2715674-2715693 Msa1269480:intron 55.0%
CCATGACCCACCAAGCAACT+TGG + chr8_3:2715683-2715702 None:intergenic 55.0%
! CCAAGTTGCTTGGTGGGTCA+TGG - chr8_3:2715680-2715699 Msa1269480:intron 55.0%
AGCAATAGCTGGCCCTTTCC+GGG + chr8_3:2716029-2716048 None:intergenic 55.0%
ACGCAACCTGTGTTGTGGCT+GGG + chr8_3:2716490-2716509 None:intergenic 55.0%
ATGGGAGCAGGTTCTCGGAA+CGG - chr8_3:2717826-2717845 Msa1269480:intron 55.0%
! CAGGTTCTCGGAACGGATTC+TGG - chr8_3:2717833-2717852 Msa1269480:intron 55.0%
! GGTTCTCGGAACGGATTCTG+GGG - chr8_3:2717835-2717854 Msa1269480:intron 55.0%
! GTTCTCGGAACGGATTCTGG+GGG - chr8_3:2717836-2717855 Msa1269480:intron 55.0%
! AACGGATTCTGGGGGAACGA+AGG - chr8_3:2717844-2717863 Msa1269480:intron 55.0%
CATCCAATTGGACGTGCAGC+AGG - chr8_3:2717899-2717918 Msa1269480:intron 55.0%
TTCCCTGCTGCACGTCCAAT+TGG + chr8_3:2717905-2717924 None:intergenic 55.0%
CTCCGGTCATGGAAAGCTCG+TGG + chr8_3:2714532-2714551 None:intergenic 60.0%
TGAGAGTGGAGCTCCGGTCA+TGG + chr8_3:2714543-2714562 None:intergenic 60.0%
GTGCGAGCCAAGTTGCTTGG+TGG - chr8_3:2715673-2715692 Msa1269480:intron 60.0%
GCAATAGCTGGCCCTTTCCG+GGG + chr8_3:2716028-2716047 None:intergenic 60.0%
CGCAACCTGTGTTGTGGCTG+GGG + chr8_3:2716489-2716508 None:intergenic 60.0%
GACGCAACCTGTGTTGTGGC+TGG + chr8_3:2716491-2716510 None:intergenic 60.0%
GGCACACTGCCTTCCGATAG+TGG - chr8_3:2717597-2717616 Msa1269480:five_prime_UTR 60.0%
CGGGTGCGAGCCAAGTTGCT+TGG - chr8_3:2715670-2715689 Msa1269480:intron 65.0%
GTGGACCCCAGCCACAACAC+AGG - chr8_3:2716481-2716500 Msa1269480:intron 65.0%
! GCAACTTGGCTCGCACCCGC+CGG + chr8_3:2715669-2715688 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2712945 2718325 2712945 ID=Msa1269480;Name=Msa1269480
chr8_3 mRNA 2712945 2718325 2712945 ID=Msa1269480-mRNA-1;Parent=Msa1269480;Name=Msa1269480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=432|1|1|1|0.8|0.66|6|241|710
chr8_3 exon 2712945 2713434 2712945 ID=Msa1269480-mRNA-1:exon:892;Parent=Msa1269480-mRNA-1
chr8_3 exon 2714062 2714118 2714062 ID=Msa1269480-mRNA-1:exon:891;Parent=Msa1269480-mRNA-1
chr8_3 exon 2714720 2714942 2714720 ID=Msa1269480-mRNA-1:exon:890;Parent=Msa1269480-mRNA-1
chr8_3 exon 2715036 2715624 2715036 ID=Msa1269480-mRNA-1:exon:889;Parent=Msa1269480-mRNA-1
chr8_3 exon 2716509 2717663 2716509 ID=Msa1269480-mRNA-1:exon:888;Parent=Msa1269480-mRNA-1
chr8_3 exon 2718034 2718325 2718034 ID=Msa1269480-mRNA-1:exon:887;Parent=Msa1269480-mRNA-1
chr8_3 five_prime_UTR 2718034 2718325 2718034 ID=Msa1269480-mRNA-1:five_prime_utr;Parent=Msa1269480-mRNA-1
chr8_3 five_prime_UTR 2717524 2717663 2717524 ID=Msa1269480-mRNA-1:five_prime_utr;Parent=Msa1269480-mRNA-1
chr8_3 CDS 2716509 2717523 2716509 ID=Msa1269480-mRNA-1:cds;Parent=Msa1269480-mRNA-1
chr8_3 CDS 2715036 2715624 2715036 ID=Msa1269480-mRNA-1:cds;Parent=Msa1269480-mRNA-1
chr8_3 CDS 2714720 2714942 2714720 ID=Msa1269480-mRNA-1:cds;Parent=Msa1269480-mRNA-1
chr8_3 CDS 2714062 2714118 2714062 ID=Msa1269480-mRNA-1:cds;Parent=Msa1269480-mRNA-1
chr8_3 CDS 2713186 2713434 2713186 ID=Msa1269480-mRNA-1:cds;Parent=Msa1269480-mRNA-1
chr8_3 three_prime_UTR 2712945 2713185 2712945 ID=Msa1269480-mRNA-1:three_prime_utr;Parent=Msa1269480-mRNA-1
Gene Sequence

>Msa1269480

ATGATTGTTGAGGAAAGGAATATAATGGAGGAAAGCAGCAATAGAGGTGAATTTCAGGCTAGTTTAGCGAAACTATCTTCATTAAGGTCGGGTGGAAGTTTTAAATCAACATTATCAGGAAGATCATCTCCGCGAAATAATTCTCCTTCGTTTCGAAGACTAAACTCTAGTCGAACGCCGAGGAAAGAAGGAAAAACTTTTGGTGGTTTTCTGTTGTTTCGGAGCAATCGTGTGTTGTTGTGGCTGCTTCTAATTACCCTCTGGGCTTATCTTGGTATTTTTTTTCAGTCCAGGTGGGCACATATTGATAAGAAGGAGGAATTTTCTGGCTTTGGAACCGGGCCAAGAAATACCGGCGTAGATGCTGATCCGAGTCTTCGCCGTGATTTGATTGCTAGTGATGACTCCTTGTCTGTTAATAATGAGACGGTTAGAAATAAAGGAGGGATTGGTAGAACAATAAATGTAGCCTTGGCAAAGAAGGAAAGTGATGATGAGGTTCCTTCTCGTCGTAAAGCAAGCCCAAAGAAGAAGAGCAGGAGATCTTCGAAAGGTAAAGCTCGTGGTAAGAAGAAACCAATTGTGGAAATTAAGAACAATGATATAGAAGAGCAGGAACCAGAAATTCCTCAAACCAATAGTACGTATGGATTACTCGTCGGTCCATTTGGCTCAACAGAAGATAGGATTTTGGAATGGAGTCCTCAGAAACGTTCCGGGACATGTAATAGGAAGGGGGACTTTGCACGCCTTGTTTGGTCGAGAAGATTTATCTTGATATTCCACGAGCTTTCCATGACCGGAGCTCCACTCTCAATGTTGGAATTGGCAACAGAGCTTTTGAGCTGTGGTGCCACTGTTTCAGCTGTTGCACTTAGCAGGAAGGGTGGTTTGATGTCAGAGCTTTCTAGAAGACGAATCAAGGTGCTTGAGGACAAAGCAGATCAAAGCTTCAAAACTGCAATGAAGGCTGATCTTGTAATTGCTGGTTCAGCTGTATGTGCATCATGGATTGAACAATATATTGAACGTTTTCCGGCGGGTGCGAGCCAAGTTGCTTGGTGGGTCATGGAAAACCGTAGAGAGTACTTCGACCGTTCAAAGGGTGTCTTGCACAGAGTAAAGATGTTGGTTTTTCTTTCTGAATCACAATCTAAACAATGGCAAAAGTGGTGCGAAGAAGAAAACATAAAACTGAGATACCAACCTGCAACTGTTCCTTTGTCTGTTAATGATGAACTGGCATTTGTAGCCGGCATTCCTTCTACACTTAACACTCCGTCCTTTAGTACTGATAAAATGATTGAGAAAAGGCAGTTGTTGCGAGAATCGGTCCGAAAAGAAATGGGATTAACTGACAATGATATGCTTGTAATATCTCTAAGTAGCATCAACCCCGGAAAGGGCCAGCTATTGCTTCTTGAATCAGCAATCTCAGTAGTAGAACACAAACAATTGCAAGATGATAAGAACATGAAAAAATTATCAAATATAAAGGAAGGCTTGTCTACACGGACTAGAAGACATCGTATGAGAAAATTGTTACCATTGTTGAAAGATGGCAAAGTAGCTCTGAAGGATACCTCAAACAATTCTTTAAGCAGAAGGAAGCAATTGTTGGCTAATAACAAAGCAACAATGCAGCAATCTCTCAAAGTTCTCATTGGTTCTGTTGGATCCAAAAGTAACAAGGTGGATTATGTTAAAAGCCTTCTCAGTTTCTTAGAACAGCATCCAAACACTTCAAAATCAGTTTTGTGGACCCCAGCCACAACACAGGTTGCGTCATTATACTCTGCAGCAGATGTTTATGCCATAAACTCTCAGGGACTTGGAGAGACATTTGGACGGGTGACTATAGAAGCAATGGCATTTGGTCTTCCGGTTCTCGGAACGGATTCTGGGGGAACGAAGGAGATAGTTGAGAACAATGTTACAGGTCTTCTTCATCCAATTGGACGTGCAGCAGGGAACGATGTCCTTGCACAGAATCTTCTGTATTTGCTTAAAAACCAGTTGGCAAGGAAGCAAATGGGGATAGAAGGCAGGAAAAAGGTGGAGAGAATGTATTTGAAGCAACACATGTATAAGAAATTTGTTGAGGTTATTGTTAGGTGCATGAGAAGCAAATAA

Protein sequence

>Msa1269480

MIVEERNIMEESSNRGEFQASLAKLSSLRSGGSFKSTLSGRSSPRNNSPSFRRLNSSRTPRKEGKTFGGFLLFRSNRVLLWLLLITLWAYLGIFFQSRWAHIDKKEEFSGFGTGPRNTGVDADPSLRRDLIASDDSLSVNNETVRNKGGIGRTINVALAKKESDDEVPSRRKASPKKKSRRSSKGKARGKKKPIVEIKNNDIEEQEPEIPQTNSTYGLLVGPFGSTEDRILEWSPQKRSGTCNRKGDFARLVWSRRFILIFHELSMTGAPLSMLELATELLSCGATVSAVALSRKGGLMSELSRRRIKVLEDKADQSFKTAMKADLVIAGSAVCASWIEQYIERFPAGASQVAWWVMENRREYFDRSKGVLHRVKMLVFLSESQSKQWQKWCEEENIKLRYQPATVPLSVNDELAFVAGIPSTLNTPSFSTDKMIEKRQLLRESVRKEMGLTDNDMLVISLSSINPGKGQLLLLESAISVVEHKQLQDDKNMKKLSNIKEGLSTRTRRHRMRKLLPLLKDGKVALKDTSNNSLSRRKQLLANNKATMQQSLKVLIGSVGSKSNKVDYVKSLLSFLEQHPNTSKSVLWTPATTQVASLYSAADVYAINSQGLGETFGRVTIEAMAFGLPVLGTDSGGTKEIVENNVTGLLHPIGRAAGNDVLAQNLLYLLKNQLARKQMGIEGRKKVERMYLKQHMYKKFVEVIVRCMRSK*