Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379770 | XP_003602904.2 | 97.872 | 517 | 8 | 1 | 1 | 514 | 1 | 517 | 0.0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379770 | sp|Q9LEU8|ARLY_ARATH | 73.885 | 471 | 123 | 0 | 43 | 513 | 44 | 514 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379770 | G7J530 | 97.872 | 517 | 8 | 1 | 1 | 514 | 1 | 517 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008110 | Msa0379770 | 0.824912 | 6.242760e-54 | -8.615850e-47 |
| Msa0014990 | Msa0379770 | 0.800609 | 1.330248e-48 | -8.615850e-47 |
| Msa0017510 | Msa0379770 | 0.822361 | 2.468136e-53 | -8.615850e-47 |
| Msa0026800 | Msa0379770 | 0.816808 | 4.568093e-52 | -8.615850e-47 |
| Msa0028420 | Msa0379770 | 0.821734 | 3.449300e-53 | -8.615850e-47 |
| Msa0029270 | Msa0379770 | 0.804924 | 1.709925e-49 | -8.615850e-47 |
| Msa0032090 | Msa0379770 | 0.812632 | 3.844439e-51 | -8.615850e-47 |
| Msa0032430 | Msa0379770 | 0.836897 | 7.146672e-57 | -8.615850e-47 |
| Msa0047030 | Msa0379770 | 0.843404 | 1.430646e-58 | -8.615850e-47 |
| Msa0047070 | Msa0379770 | 0.807845 | 4.142295e-50 | -8.615850e-47 |
| Msa0057420 | Msa0379770 | 0.807280 | 5.459443e-50 | -8.615850e-47 |
| Msa0061290 | Msa0379770 | 0.818286 | 2.121709e-52 | -8.615850e-47 |
| Msa0074350 | Msa0379770 | 0.800382 | 1.479302e-48 | -8.615850e-47 |
| Msa0075220 | Msa0379770 | 0.809300 | 2.025308e-50 | -8.615850e-47 |
| Msa0079380 | Msa0379770 | 0.828566 | 8.372495e-55 | -8.615850e-47 |
| Msa0089630 | Msa0379770 | 0.819433 | 1.164452e-52 | -8.615850e-47 |
| Msa0090400 | Msa0379770 | 0.831310 | 1.795210e-55 | -8.615850e-47 |
| Msa0101450 | Msa0379770 | 0.817568 | 3.083065e-52 | -8.615850e-47 |
| Msa0115080 | Msa0379770 | 0.815881 | 7.366594e-52 | -8.615850e-47 |
| Msa0122510 | Msa0379770 | 0.802173 | 6.359780e-49 | -8.615850e-47 |
| Msa0124060 | Msa0379770 | 0.815351 | 9.664419e-52 | -8.615850e-47 |
| Msa0127050 | Msa0379770 | 0.805004 | 1.645840e-49 | -8.615850e-47 |
| Msa0137880 | Msa0379770 | 0.849214 | 3.733000e-60 | -8.615850e-47 |
| Msa0149370 | Msa0379770 | 0.808704 | 2.717583e-50 | -8.615850e-47 |
| Msa0152350 | Msa0379770 | 0.813622 | 2.331927e-51 | -8.615850e-47 |
| Msa0154680 | Msa0379770 | 0.804320 | 2.285498e-49 | -8.615850e-47 |
| Msa0157290 | Msa0379770 | 0.822144 | 2.771350e-53 | -8.615850e-47 |
| Msa0167010 | Msa0379770 | 0.834165 | 3.509029e-56 | -8.615850e-47 |
| Msa0167520 | Msa0379770 | 0.802040 | 6.773172e-49 | -8.615850e-47 |
| Msa0168500 | Msa0379770 | 0.827935 | 1.188762e-54 | -8.615850e-47 |
| Msa0172070 | Msa0379770 | 0.831060 | 2.067032e-55 | -8.615850e-47 |
| Msa0175780 | Msa0379770 | 0.826888 | 2.118795e-54 | -8.615850e-47 |
| Msa0182240 | Msa0379770 | 0.801766 | 7.712202e-49 | -8.615850e-47 |
| Msa0225680 | Msa0379770 | 0.816730 | 4.756379e-52 | -8.615850e-47 |
| Msa0229230 | Msa0379770 | 0.842487 | 2.509175e-58 | -8.615850e-47 |
| Msa0379770 | Msa0386850 | 0.810260 | 1.259202e-50 | -8.615850e-47 |
| Msa0379770 | Msa0388150 | 0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0379770 | Msa0402650 | 0.852868 | 3.480704e-61 | -8.615850e-47 |
| Msa0379770 | Msa0404190 | 0.801203 | 1.005727e-48 | -8.615850e-47 |
| Msa0379770 | Msa0419700 | 0.831500 | 1.611811e-55 | -8.615850e-47 |
| Msa0379770 | Msa0428150 | 0.843539 | 1.316854e-58 | -8.615850e-47 |
| Msa0379770 | Msa0428590 | 0.836284 | 1.024034e-56 | -8.615850e-47 |
| Msa0379770 | Msa0442830 | 0.831789 | 1.367461e-55 | -8.615850e-47 |
| Msa0379770 | Msa0449210 | 0.831807 | 1.353831e-55 | -8.615850e-47 |
| Msa0379770 | Msa0462500 | 0.838418 | 2.910110e-57 | -8.615850e-47 |
| Msa0379770 | Msa0465410 | 0.818388 | 2.012394e-52 | -8.615850e-47 |
| Msa0379770 | Msa0467490 | 0.801674 | 8.053310e-49 | -8.615850e-47 |
| Msa0379770 | Msa0474520 | 0.836288 | 1.021552e-56 | -8.615850e-47 |
| Msa0379770 | Msa0481530 | 0.810246 | 1.267748e-50 | -8.615850e-47 |
| Msa0379770 | Msa0487420 | 0.814347 | 1.613956e-51 | -8.615850e-47 |
| Msa0379770 | Msa0497490 | 0.812085 | 5.062442e-51 | -8.615850e-47 |
| Msa0379770 | Msa0501460 | 0.823463 | 1.366449e-53 | -8.615850e-47 |
| Msa0379770 | Msa0508150 | 0.803220 | 3.868030e-49 | -8.615850e-47 |
| Msa0379770 | Msa0511270 | 0.821395 | 4.130554e-53 | -8.615850e-47 |
| Msa0379770 | Msa0511370 | 0.814775 | 1.297139e-51 | -8.615850e-47 |
| Msa0379770 | Msa0511750 | 0.821878 | 3.195270e-53 | -8.615850e-47 |
| Msa0379770 | Msa0520890 | 0.855011 | 8.396814e-62 | -8.615850e-47 |
| Msa0379770 | Msa0524190 | 0.837781 | 4.245143e-57 | -8.615850e-47 |
| Msa0379770 | Msa0529890 | 0.820289 | 7.419114e-53 | -8.615850e-47 |
| Msa0379770 | Msa0532070 | 0.833176 | 6.197747e-56 | -8.615850e-47 |
| Msa0379770 | Msa0547900 | 0.834413 | 3.041034e-56 | -8.615850e-47 |
| Msa0379770 | Msa0548170 | 0.810335 | 1.213432e-50 | -8.615850e-47 |
| Msa0379770 | Msa0569200 | 0.830131 | 3.490591e-55 | -8.615850e-47 |
| Msa0379770 | Msa0585560 | 0.819040 | 1.430949e-52 | -8.615850e-47 |
| Msa0379770 | Msa0602690 | 0.826005 | 3.438755e-54 | -8.615850e-47 |
| Msa0379770 | Msa0602880 | 0.829731 | 4.367474e-55 | -8.615850e-47 |
| Msa0379770 | Msa0608320 | 0.821884 | 3.184562e-53 | -8.615850e-47 |
| Msa0379770 | Msa0615710 | 0.834899 | 2.294973e-56 | -8.615850e-47 |
| Msa0379770 | Msa0625720 | 0.822657 | 2.106624e-53 | -8.615850e-47 |
| Msa0379770 | Msa0643940 | 0.808704 | 2.717923e-50 | -8.615850e-47 |
| Msa0379770 | Msa0650020 | 0.815839 | 7.524376e-52 | -8.615850e-47 |
| Msa0379770 | Msa0661650 | 0.811522 | 6.711431e-51 | -8.615850e-47 |
| Msa0379770 | Msa0663390 | 0.819452 | 1.153007e-52 | -8.615850e-47 |
| Msa0379770 | Msa0683570 | 0.806416 | 8.312449e-50 | -8.615850e-47 |
| Msa0379770 | Msa0689520 | 0.837344 | 5.495261e-57 | -8.615850e-47 |
| Msa0379770 | Msa0691980 | 0.832610 | 8.569041e-56 | -8.615850e-47 |
| Msa0379770 | Msa0698830 | 0.818550 | 1.848798e-52 | -8.615850e-47 |
| Msa0379770 | Msa0716830 | 0.813117 | 3.010963e-51 | -8.615850e-47 |
| Msa0379770 | Msa0730430 | 0.810728 | 9.977940e-51 | -8.615850e-47 |
| Msa0379770 | Msa0754520 | 0.801033 | 1.089968e-48 | -8.615850e-47 |
| Msa0379770 | Msa0757830 | 0.817309 | 3.526056e-52 | -8.615850e-47 |
| Msa0379770 | Msa0765840 | 0.800161 | 1.641231e-48 | -8.615850e-47 |
| Msa0379770 | Msa0788420 | 0.809809 | 1.574558e-50 | -8.615850e-47 |
| Msa0379770 | Msa0793800 | 0.814288 | 1.662813e-51 | -8.615850e-47 |
| Msa0379770 | Msa0826570 | 0.805442 | 1.332555e-49 | -8.615850e-47 |
| Msa0379770 | Msa0867480 | 0.808942 | 2.416831e-50 | -8.615850e-47 |
| Msa0379770 | Msa0869780 | 0.819368 | 1.204580e-52 | -8.615850e-47 |
| Msa0379770 | Msa0880140 | 0.817158 | 3.812345e-52 | -8.615850e-47 |
| Msa0379770 | Msa0906610 | 0.824196 | 9.200351e-54 | -8.615850e-47 |
| Msa0379770 | Msa0909230 | 0.807671 | 4.511008e-50 | -8.615850e-47 |
| Msa0379770 | Msa0919770 | 0.855641 | 5.505376e-62 | -8.615850e-47 |
| Msa0379770 | Msa0938480 | 0.822099 | 2.838942e-53 | -8.615850e-47 |
| Msa0379770 | Msa0945110 | 0.850450 | 1.685400e-60 | -8.615850e-47 |
| Msa0379770 | Msa0975640 | 0.809893 | 1.511035e-50 | -8.615850e-47 |
| Msa0379770 | Msa0979730 | 0.820464 | 6.763982e-53 | -8.615850e-47 |
| Msa0379770 | Msa0981950 | 0.823082 | 1.677705e-53 | -8.615850e-47 |
| Msa0379770 | Msa1018690 | 0.804582 | 2.015577e-49 | -8.615850e-47 |
| Msa0379770 | Msa1020560 | 0.806016 | 1.009421e-49 | -8.615850e-47 |
| Msa0379770 | Msa1020670 | 0.803511 | 3.365959e-49 | -8.615850e-47 |
| Msa0379770 | Msa1029250 | 0.808594 | 2.868468e-50 | -8.615850e-47 |
| Msa0379770 | Msa1084960 | 0.841046 | 6.023108e-58 | -8.615850e-47 |
| Msa0379770 | Msa1097980 | 0.808585 | 2.880762e-50 | -8.615850e-47 |
| Msa0379770 | Msa1106700 | 0.806503 | 7.968934e-50 | -8.615850e-47 |
| Msa0379770 | Msa1111090 | 0.849678 | 2.772488e-60 | -8.615850e-47 |
| Msa0379770 | Msa1162150 | 0.809882 | 1.518598e-50 | -8.615850e-47 |
| Msa0379770 | Msa1171710 | 0.823328 | 1.469231e-53 | -8.615850e-47 |
| Msa0379770 | Msa1183120 | 0.815602 | 8.497327e-52 | -8.615850e-47 |
| Msa0379770 | Msa1206050 | 0.813075 | 3.074903e-51 | -8.615850e-47 |
| Msa0379770 | Msa1209460 | 0.846490 | 2.101899e-59 | -8.615850e-47 |
| Msa0379770 | Msa1222850 | 0.849875 | 2.441302e-60 | -8.615850e-47 |
| Msa0379770 | Msa1223470 | 0.831103 | 2.017807e-55 | -8.615850e-47 |
| Msa0379770 | Msa1225700 | 0.876746 | 1.092928e-68 | -8.615850e-47 |
| Msa0379770 | Msa1229500 | 0.831344 | 1.760078e-55 | -8.615850e-47 |
| Msa0379770 | Msa1269480 | 0.822444 | 2.360859e-53 | -8.615850e-47 |
| Msa0379770 | Msa1271990 | 0.824151 | 9.429977e-54 | -8.615850e-47 |
| Msa0379770 | Msa1297300 | 0.805394 | 1.363858e-49 | -8.615850e-47 |
| Msa0379770 | Msa1298820 | 0.801088 | 1.062008e-48 | -8.615850e-47 |
| Msa0379770 | Msa1302830 | 0.841029 | 6.087669e-58 | -8.615850e-47 |
| Msa0379770 | Msa1309790 | 0.815290 | 9.971977e-52 | -8.615850e-47 |
| Msa0379770 | Msa1314630 | 0.811129 | 8.168376e-51 | -8.615850e-47 |
| Msa0379770 | Msa1321340 | 0.841405 | 4.846589e-58 | -8.615850e-47 |
| Msa0379770 | Msa1322940 | 0.813068 | 3.086513e-51 | -8.615850e-47 |
| Msa0379770 | Msa1330410 | 0.850234 | 1.936651e-60 | -8.615850e-47 |
| Msa0379770 | Msa1365060 | 0.802255 | 6.118125e-49 | -8.615850e-47 |
| Msa0379770 | Msa1367370 | 0.837150 | 6.160092e-57 | -8.615850e-47 |
| Msa0379770 | Msa1369550 | 0.865825 | 4.458218e-65 | -8.615850e-47 |
| Msa0379770 | Msa1370010 | 0.820846 | 5.528899e-53 | -8.615850e-47 |
| Msa0379770 | Msa1373650 | 0.829093 | 6.242193e-55 | -8.615850e-47 |
| Msa0379770 | Msa1385010 | 0.809096 | 2.239853e-50 | -8.615850e-47 |
| Msa0379770 | Msa1391770 | 0.859310 | 4.519253e-63 | -8.615850e-47 |
| Msa0379770 | Msa1392240 | 0.806997 | 6.268762e-50 | -8.615850e-47 |
| Msa0379770 | Msa1407220 | 0.816270 | 6.028598e-52 | -8.615850e-47 |
| Msa0379770 | Msa1417420 | 0.867833 | 1.022713e-65 | -8.615850e-47 |
| Msa0379770 | Msa1443110 | 0.835953 | 1.242523e-56 | -8.615850e-47 |
| Msa0379770 | Msa1446950 | 0.824913 | 6.237108e-54 | -8.615850e-47 |
| Msa0379770 | Msa1452930 | 0.805399 | 1.360385e-49 | -8.615850e-47 |
| Msa0379770 | Msa1462710 | 0.924381 | 7.602472e-90 | -8.615850e-47 |
| Msa0255090 | Msa0379770 | 0.811815 | 5.796988e-51 | -8.615850e-47 |
| Msa0259380 | Msa0379770 | 0.815010 | 1.150478e-51 | -8.615850e-47 |
| Msa0260670 | Msa0379770 | 0.802261 | 6.100632e-49 | -8.615850e-47 |
| Msa0261340 | Msa0379770 | 0.801535 | 8.600001e-49 | -8.615850e-47 |
| Msa0264040 | Msa0379770 | 0.822451 | 2.352919e-53 | -8.615850e-47 |
| Msa0267110 | Msa0379770 | 0.823676 | 1.218405e-53 | -8.615850e-47 |
| Msa0283800 | Msa0379770 | 0.821073 | 4.901726e-53 | -8.615850e-47 |
| Msa0292330 | Msa0379770 | 0.805988 | 1.023068e-49 | -8.615850e-47 |
| Msa0292400 | Msa0379770 | 0.828681 | 7.854137e-55 | -8.615850e-47 |
| Msa0302000 | Msa0379770 | 0.821820 | 3.295013e-53 | -8.615850e-47 |
| Msa0307770 | Msa0379770 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
| Msa0312700 | Msa0379770 | 0.800788 | 1.222940e-48 | -8.615850e-47 |
| Msa0321920 | Msa0379770 | 0.802993 | 4.309055e-49 | -8.615850e-47 |
| Msa0339320 | Msa0379770 | 0.807333 | 5.319678e-50 | -8.615850e-47 |
| Msa0349710 | Msa0379770 | 0.832400 | 9.658473e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379770 | MtrunA17_Chr3g0132881 | 97.683 | 518 | 8 | 2 | 1 | 514 | 1 | 518 | 0.0 | 1036 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379770 | AT5G10920.1 | 73.885 | 471 | 123 | 0 | 43 | 513 | 44 | 514 | 0.0 | 756 |
Find 141 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGTGTTAGAACTATTT+TGG | 0.122795 | 3_1:+81134036 | Msa0379770:CDS |
| TCGAGAGTGGTGAGTTTAAT+TGG | 0.187249 | 3_1:+81132644 | Msa0379770:CDS |
| ACCCCAAAGTTTAGCTTCTT+TGG | 0.192503 | 3_1:-81132357 | None:intergenic |
| AAACACAAGTTTATTATTTC+AGG | 0.200820 | 3_1:-81135025 | None:intergenic |
| ATCCAGAAATTTATTTCTTA+TGG | 0.205292 | 3_1:+81134895 | Msa0379770:CDS |
| AACCATAAGAAATAAATTTC+TGG | 0.214883 | 3_1:-81134897 | None:intergenic |
| CGCTGAGAACGCACTTATTT+CGG | 0.220303 | 3_1:+81132150 | Msa0379770:five_prime_UTR |
| AGCAGCATTGTTGGTGGTTT+GGG | 0.225995 | 3_1:-81132330 | None:intergenic |
| CTGTGGGCTTCAGAGGAATT+TGG | 0.246553 | 3_1:+81133681 | Msa0379770:CDS |
| TTGCCGACCAACTCGATTAT+TGG | 0.269342 | 3_1:+81134938 | Msa0379770:CDS |
| TAGCAGCATTGTTGGTGGTT+TGG | 0.303920 | 3_1:-81132331 | None:intergenic |
| GCTTGTGCGTTGGCTGGTAC+AGG | 0.319298 | 3_1:+81133367 | Msa0379770:CDS |
| CCCCAAAGTTTAGCTTCTTT+GGG | 0.325278 | 3_1:-81132356 | None:intergenic |
| ATATCATGAGATGTTCTAAA+TGG | 0.325994 | 3_1:-81134742 | None:intergenic |
| GTTTGATCAGTGCGAGTGAT+AGG | 0.329792 | 3_1:+81132581 | Msa0379770:CDS |
| GGATTCTATTATTGAAGGTT+TGG | 0.334686 | 3_1:+81132603 | Msa0379770:CDS |
| GGTAAGTCTGCCAGAGTCAT+AGG | 0.335284 | 3_1:+81133789 | Msa0379770:CDS |
| AACTTGATCATTTCTACTTC+TGG | 0.342542 | 3_1:-81132752 | None:intergenic |
| TTTGGGTTTAGCAGCATTGT+TGG | 0.350008 | 3_1:-81132339 | None:intergenic |
| TGGTGGTTTGGGCTTGCATT+CGG | 0.369857 | 3_1:-81132319 | None:intergenic |
| GGTGGTTTGGGCTTGCATTC+GGG | 0.373779 | 3_1:-81132318 | None:intergenic |
| AAGGATGTGTATGAATTTCT+TGG | 0.377849 | 3_1:+81134859 | Msa0379770:CDS |
| TGCATCCATGCTCGCTAAAC+AGG | 0.390409 | 3_1:+81132484 | Msa0379770:CDS |
| ACCCAAAGAAGCTAAACTTT+GGG | 0.395380 | 3_1:+81132355 | Msa0379770:CDS |
| CAATGAACATTACTTTCAAT+CGG | 0.395660 | 3_1:+81134086 | Msa0379770:CDS |
| TGCTTACAATCGTGATTTGC+AGG | 0.397013 | 3_1:+81133854 | Msa0379770:CDS |
| GATTCTATTATTGAAGGTTT+GGG | 0.400207 | 3_1:+81132604 | Msa0379770:CDS |
| CTGTTGAAACAGAATCGCTT+GGG | 0.414810 | 3_1:-81133713 | None:intergenic |
| ATCATGTTGCATATTTGAAT+AGG | 0.416564 | 3_1:+81135055 | Msa0379770:three_prime_UTR |
| GCAAGAAGCTCACGACTTCA+AGG | 0.418350 | 3_1:-81135169 | None:intergenic |
| AAGAATACAAAAGGCTTTAC+CGG | 0.418379 | 3_1:+81134111 | Msa0379770:CDS |
| CGCTGATTATCTTGTTAAGA+AGG | 0.421388 | 3_1:+81134159 | Msa0379770:CDS |
| CCCTGAAAATTGTTCATCCA+TGG | 0.422864 | 3_1:+81132178 | Msa0379770:exon |
| AGTGGAGGATCGAGTTGTTA+AGG | 0.423526 | 3_1:-81132270 | None:intergenic |
| AATCACGGTCTTATTGTTCC+TGG | 0.423631 | 3_1:+81132871 | Msa0379770:CDS |
| TTAGGGGCTTGTGCGTTGGC+TGG | 0.427204 | 3_1:+81133361 | Msa0379770:CDS |
| AGAAGGTGCTGTAATAAAAC+AGG | 0.428088 | 3_1:-81132919 | None:intergenic |
| TCCCTTTCCCGTTTAAAAGA+AGG | 0.430003 | 3_1:+81132116 | Msa0379770:five_prime_UTR |
| TTACTGCTCCAATGAGGAAT+AGG | 0.432342 | 3_1:+81133431 | Msa0379770:CDS |
| CGTAGCTGTTTCTAAAGGGT+TGG | 0.433587 | 3_1:+81132049 | Msa0379770:five_prime_UTR |
| AACCCAAAGAAGCTAAACTT+TGG | 0.437199 | 3_1:+81132354 | Msa0379770:CDS |
| GGTCTCGTAGCTGTTTCTAA+AGG | 0.437508 | 3_1:+81132044 | None:intergenic |
| TGGTGGAAAGGGAGTGGGTA+CGG | 0.440215 | 3_1:-81132247 | None:intergenic |
| GTCTCGTAGCTGTTTCTAAA+GGG | 0.444187 | 3_1:+81132045 | None:intergenic |
| TTCTCGACTTGGTGAAGAAT+GGG | 0.446818 | 3_1:+81133656 | Msa0379770:CDS |
| GAGTGGGTACGGAGTGGAGA+GGG | 0.447228 | 3_1:-81132236 | None:intergenic |
| TTTCTCGACTTGGTGAAGAA+TGG | 0.448284 | 3_1:+81133655 | Msa0379770:CDS |
| TCAACTTTCATTGCTTAAGC+TGG | 0.453847 | 3_1:+81132840 | Msa0379770:CDS |
| TTTAGCCAAGGTTACTGAAT+GGG | 0.454107 | 3_1:+81135117 | Msa0379770:three_prime_UTR |
| AATGAACATTACTTTCAATC+GGG | 0.455024 | 3_1:+81134087 | Msa0379770:CDS |
| TTTATTTCTTATGGTTCCAC+CGG | 0.456153 | 3_1:+81134904 | Msa0379770:CDS |
| ATTCATGACATCGGATGCAT+TGG | 0.456659 | 3_1:+81133405 | Msa0379770:CDS |
| TTGCAGATTGAGCGTGATGC+TGG | 0.458156 | 3_1:+81133298 | Msa0379770:intron |
| TTATACAAACATGACATTAG+AGG | 0.459314 | 3_1:+81132449 | Msa0379770:CDS |
| CCAAGCGATTCTGTTTCAAC+AGG | 0.459444 | 3_1:+81133714 | Msa0379770:CDS |
| CGATGTCATGAATCGATCAA+TGG | 0.461237 | 3_1:-81133395 | None:intergenic |
| ATCAAAGAATTGCCAACTGT+TGG | 0.463984 | 3_1:+81134792 | Msa0379770:CDS |
| GTAAGATACCTATTCCTCAT+TGG | 0.466006 | 3_1:-81133439 | None:intergenic |
| CCTGTTGAAACAGAATCGCT+TGG | 0.466168 | 3_1:-81133714 | None:intergenic |
| TACACATCCTTGTCAAAGAC+TGG | 0.467066 | 3_1:-81134847 | None:intergenic |
| CTTGTGCGTTGGCTGGTACA+GGG | 0.468110 | 3_1:+81133368 | Msa0379770:CDS |
| AGTTGTTAAGGTGGTGGAAA+GGG | 0.469339 | 3_1:-81132258 | None:intergenic |
| CGAACAAGTTCCATTGGATC+AGG | 0.470603 | 3_1:-81133765 | None:intergenic |
| ATTTAGCCAAGGTTACTGAA+TGG | 0.474940 | 3_1:+81135116 | Msa0379770:three_prime_UTR |
| GCTGCTCTTACTGATTTGAT+TGG | 0.475293 | 3_1:+81132703 | Msa0379770:CDS |
| CCTAACCTGTTTAGCGAGCA+TGG | 0.475927 | 3_1:-81132489 | None:intergenic |
| CAATCGGGAAAGAATACAAA+AGG | 0.481128 | 3_1:+81134102 | Msa0379770:CDS |
| TCCTTTAGGGGCTTGTGCGT+TGG | 0.482828 | 3_1:+81133357 | Msa0379770:CDS |
| GAAGTATGTAACTTCTTAGC+AGG | 0.486485 | 3_1:-81132730 | None:intergenic |
| AAGAGTATCCTAGTTGTCAC+TGG | 0.487293 | 3_1:+81134984 | Msa0379770:exon |
| TATGAAATAAAGTATTTGGA+TGG | 0.490532 | 3_1:+81135247 | Msa0379770:three_prime_UTR |
| GATAGGGATTCTATTATTGA+AGG | 0.491597 | 3_1:+81132598 | Msa0379770:CDS |
| TAAACGGGAAAGGGATTCCC+TGG | 0.491674 | 3_1:-81132108 | None:intergenic |
| TTCTGACCGAGATTTCCTAC+TGG | 0.492656 | 3_1:+81133596 | Msa0379770:CDS |
| TTCATGACATCGGATGCATT+GGG | 0.494059 | 3_1:+81133406 | Msa0379770:CDS |
| TAATTGGAGAGCTGATAGAG+AGG | 0.498860 | 3_1:+81132660 | Msa0379770:CDS |
| ATACAAAAGGCTTTACCGGC+TGG | 0.499237 | 3_1:+81134115 | Msa0379770:CDS |
| TTCGGGTTATGATGAATTTG+CGG | 0.501030 | 3_1:-81132301 | None:intergenic |
| TTAAGGTGGTGGAAAGGGAG+TGG | 0.505785 | 3_1:-81132253 | None:intergenic |
| GGGTTTAGCAGCATTGTTGG+TGG | 0.506523 | 3_1:-81132336 | None:intergenic |
| GAATTTGCGGTTAGTGAAAG+TGG | 0.510133 | 3_1:-81132288 | None:intergenic |
| GGATCGAGTTGTTAAGGTGG+TGG | 0.511715 | 3_1:-81132264 | None:intergenic |
| TCTGCTTGCTTATGTTGAAG+AGG | 0.512207 | 3_1:+81132939 | Msa0379770:CDS |
| AGAACATCTCATGATATAGC+AGG | 0.515600 | 3_1:+81134748 | Msa0379770:CDS |
| GATGTCATGAATCGATCAAT+GGG | 0.518952 | 3_1:-81133394 | None:intergenic |
| ATGGGTACTGTGGGCTTCAG+AGG | 0.519124 | 3_1:+81133674 | Msa0379770:CDS |
| CAGCTTCCCCAGTGACAACT+AGG | 0.524290 | 3_1:-81134992 | None:intergenic |
| GTAAGTCTGCCAGAGTCATA+GGG | 0.524586 | 3_1:+81133790 | Msa0379770:CDS |
| GTTTGATTGATTGTAGAGCT+AGG | 0.529508 | 3_1:+81133323 | Msa0379770:CDS |
| GCAGTGCACCTTTCTCGACT+TGG | 0.530755 | 3_1:+81133645 | Msa0379770:CDS |
| TTGTTACTGATTTACGACTT+TGG | 0.532012 | 3_1:+81132773 | Msa0379770:CDS |
| TTTGATCAGTGCGAGTGATA+GGG | 0.532025 | 3_1:+81132582 | Msa0379770:CDS |
| TAAGGTGGTGGAAAGGGAGT+GGG | 0.532635 | 3_1:-81132252 | None:intergenic |
| AGTGAATCGTTCAACGGCGT+CGG | 0.532926 | 3_1:-81132402 | None:intergenic |
| GTCGGCAACACAAGCAGACC+CGG | 0.542747 | 3_1:-81134923 | None:intergenic |
| TTACCACGAACAAGTTCCAT+TGG | 0.545026 | 3_1:-81133771 | None:intergenic |
| ATTCTTCACCAAGTCGAGAA+AGG | 0.545808 | 3_1:-81133653 | None:intergenic |
| AACTACCCATTCAGTAACCT+TGG | 0.554249 | 3_1:-81135122 | None:intergenic |
| GAGTTGTTAAGGTGGTGGAA+AGG | 0.558676 | 3_1:-81132259 | None:intergenic |
| GAAACTCCAGTAGGAAATCT+CGG | 0.563571 | 3_1:-81133602 | None:intergenic |
| ATTGAAAAGAGAATCGAGAG+TGG | 0.563997 | 3_1:+81132631 | Msa0379770:CDS |
| CATCCAATAATCGAGTTGGT+CGG | 0.565893 | 3_1:-81134941 | None:intergenic |
| GAAAGGGAGTGGGTACGGAG+TGG | 0.566617 | 3_1:-81132242 | None:intergenic |
| TGGGGTGGTAGATTCGAAGA+AGG | 0.568029 | 3_1:+81132374 | Msa0379770:CDS |
| GCCAACGCACAAGCCCCTAA+AGG | 0.569555 | 3_1:-81133358 | None:intergenic |
| CGCTGCAAATGAGTATAACC+AGG | 0.570144 | 3_1:-81132889 | None:intergenic |
| GAGAGCTGAAGAGAAAACCA+TGG | 0.571386 | 3_1:-81132195 | None:intergenic |
| AGAAAGGTGCACTGCTGTGA+TGG | 0.574379 | 3_1:-81133637 | None:intergenic |
| CTACATAAGTTCATGCTGCA+TGG | 0.577413 | 3_1:-81135219 | None:intergenic |
| ATACAACAAAAGTGAACACC+AGG | 0.577931 | 3_1:+81132090 | Msa0379770:five_prime_UTR |
| GATCCAATGGAACTTGTTCG+TGG | 0.578604 | 3_1:+81133768 | Msa0379770:CDS |
| CAAGACTCAAATCCAACAGT+TGG | 0.580199 | 3_1:-81134804 | None:intergenic |
| GCAATTCTTTGATGTGCACA+AGG | 0.581551 | 3_1:-81134782 | None:intergenic |
| TGGTGAAGAATGGGTACTGT+GGG | 0.591067 | 3_1:+81133665 | Msa0379770:CDS |
| TAACTGTTTATCATAAGAGA+CGG | 0.595595 | 3_1:-81132429 | None:intergenic |
| AGAGTATCCTAGTTGTCACT+GGG | 0.596813 | 3_1:+81134985 | Msa0379770:three_prime_UTR |
| AAGCTGGCTTTGAACAATCA+CGG | 0.602310 | 3_1:+81132856 | Msa0379770:CDS |
| GGAGTGGGTACGGAGTGGAG+AGG | 0.607767 | 3_1:-81132237 | None:intergenic |
| CCCAAAGAAGCTAAACTTTG+GGG | 0.616189 | 3_1:+81132356 | Msa0379770:CDS |
| CATTGATCGATTCATGACAT+CGG | 0.617561 | 3_1:+81133396 | Msa0379770:CDS |
| CTTCAACATAAGCAAGCAGA+AGG | 0.625456 | 3_1:-81132936 | None:intergenic |
| GGAGGATCGAGTTGTTAAGG+TGG | 0.625570 | 3_1:-81132267 | None:intergenic |
| ACTCTTCTCACATTGTGCAA+AGG | 0.630735 | 3_1:+81133822 | Msa0379770:CDS |
| CATATTGAATAGTATCGATG+CGG | 0.633815 | 3_1:+81133572 | Msa0379770:intron |
| GTTCTAACACTGTCAAACAC+TGG | 0.634639 | 3_1:-81134028 | None:intergenic |
| TGGGATTTACTGCTCCAATG+AGG | 0.636183 | 3_1:+81133425 | Msa0379770:CDS |
| TTATTTCTTATGGTTCCACC+GGG | 0.642386 | 3_1:+81134905 | Msa0379770:CDS |
| TGTTGAAACAGAATCGCTTG+GGG | 0.644193 | 3_1:-81133712 | None:intergenic |
| TTGGTGAAGAATGGGTACTG+TGG | 0.649560 | 3_1:+81133664 | Msa0379770:CDS |
| GGATTCAGTGAATCGTTCAA+CGG | 0.655801 | 3_1:-81132408 | None:intergenic |
| TAACAGAGAGAAACTCCAGT+AGG | 0.660772 | 3_1:-81133611 | None:intergenic |
| TAAGTCTGCCAGAGTCATAG+GGG | 0.665309 | 3_1:+81133791 | Msa0379770:CDS |
| GTTGCATCAAGATAACCAGC+CGG | 0.668367 | 3_1:-81134130 | None:intergenic |
| AAAGAAGCTAAACTTTGGGG+TGG | 0.671244 | 3_1:+81132359 | Msa0379770:CDS |
| AAATCACGATTGTAAGCATG+TGG | 0.678548 | 3_1:-81133849 | None:intergenic |
| TTTGCGGTTAGTGAAAGTGG+AGG | 0.683832 | 3_1:-81132285 | None:intergenic |
| TATAAATCCAGTCTTTGACA+AGG | 0.699348 | 3_1:+81134840 | Msa0379770:CDS |
| GGCAACACAAGCAGACCCGG+TGG | 0.702657 | 3_1:-81134920 | None:intergenic |
| AAGTCTGCCAGAGTCATAGG+GGG | 0.718882 | 3_1:+81133792 | Msa0379770:CDS |
| GAGTATCCTAGTTGTCACTG+GGG | 0.753628 | 3_1:+81134986 | Msa0379770:three_prime_UTR |
| TACAACAAAAGTGAACACCA+GGG | 0.761457 | 3_1:+81132091 | Msa0379770:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATGAAATAAAGTATT+TGG | + | chr3_1:81135243-81135262 | Msa0379770:three_prime_UTR | 10.0% |
| !!! | TTGAATTTGTGTTTTTTTTT+AGG | + | chr3_1:81132558-81132577 | Msa0379770:intron | 15.0% |
| !!! | TGAATTTGTGTTTTTTTTTA+GGG | + | chr3_1:81132559-81132578 | Msa0379770:intron | 15.0% |
| !!! | TATTTGAGATTCATTAAAAA+TGG | + | chr3_1:81133973-81133992 | Msa0379770:intron | 15.0% |
| !!! | TTATTGTATCATTACATTTT+AGG | + | chr3_1:81134622-81134641 | Msa0379770:intron | 15.0% |
| !! | CAAAGTTTGAATTATGTTAA+TGG | + | chr3_1:81132994-81133013 | Msa0379770:intron | 20.0% |
| !! | ATTATGTTAATGGAAAAGTA+TGG | + | chr3_1:81133004-81133023 | Msa0379770:intron | 20.0% |
| !!! | AAAATGAGCTATTCAATTTT+CGG | + | chr3_1:81133040-81133059 | Msa0379770:intron | 20.0% |
| !! | ATATGAATAACAAATCTATG+AGG | - | chr3_1:81133103-81133122 | None:intergenic | 20.0% |
| !!! | CTGTATATGACAATATTTTA+TGG | + | chr3_1:81134578-81134597 | Msa0379770:intron | 20.0% |
| !!! | ATCCAGAAATTTATTTCTTA+TGG | + | chr3_1:81134895-81134914 | Msa0379770:CDS | 20.0% |
| !! | AACCATAAGAAATAAATTTC+TGG | - | chr3_1:81134900-81134919 | None:intergenic | 20.0% |
| !! | AAACACAAGTTTATTATTTC+AGG | - | chr3_1:81135028-81135047 | None:intergenic | 20.0% |
| !!! | ATGAATTTTAAATTTAGCCA+AGG | + | chr3_1:81135105-81135124 | Msa0379770:three_prime_UTR | 20.0% |
| !!! | TATGAAATAAAGTATTTGGA+TGG | + | chr3_1:81135247-81135266 | Msa0379770:three_prime_UTR | 20.0% |
| ! | TAACTGTTTATCATAAGAGA+CGG | - | chr3_1:81132432-81132451 | None:intergenic | 25.0% |
| ! | TTATACAAACATGACATTAG+AGG | + | chr3_1:81132449-81132468 | Msa0379770:CDS | 25.0% |
| ! | GATTCTATTATTGAAGGTTT+GGG | + | chr3_1:81132604-81132623 | Msa0379770:CDS | 25.0% |
| !! | TTAATGGAAAAGTATGGATT+TGG | + | chr3_1:81133010-81133029 | Msa0379770:intron | 25.0% |
| ! | AGTACACAATTAACTCTATT+AGG | - | chr3_1:81133174-81133193 | None:intergenic | 25.0% |
| !!! | TAACATCATCGTTATTTTAC+CGG | + | chr3_1:81133211-81133230 | Msa0379770:intron | 25.0% |
| !!! | ATAGGTATCTTACTTTTTAC+TGG | + | chr3_1:81133449-81133468 | Msa0379770:intron | 25.0% |
| !!! | TCATTAAAAATGGTTGCTTT+TGG | + | chr3_1:81133983-81134002 | Msa0379770:intron | 25.0% |
| ! | CAATGAACATTACTTTCAAT+CGG | + | chr3_1:81134086-81134105 | Msa0379770:CDS | 25.0% |
| ! | AATGAACATTACTTTCAATC+GGG | + | chr3_1:81134087-81134106 | Msa0379770:CDS | 25.0% |
| !! | TAATTTTTACCTCAAACTGA+AGG | - | chr3_1:81134203-81134222 | None:intergenic | 25.0% |
| ! | CTGAATGTTTAGATTTACAA+GGG | - | chr3_1:81134328-81134347 | None:intergenic | 25.0% |
| ! | ACTGAATGTTTAGATTTACA+AGG | - | chr3_1:81134329-81134348 | None:intergenic | 25.0% |
| ! | ATCTATTTCCTTCATTCAAA+TGG | - | chr3_1:81134399-81134418 | None:intergenic | 25.0% |
| ! | AATGATAACCATAATCATTG+TGG | - | chr3_1:81134476-81134495 | None:intergenic | 25.0% |
| ! | AGTGGAAAGATTGTAATAAT+AGG | - | chr3_1:81134525-81134544 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAGGGTAAGAAT+CGG | - | chr3_1:81134707-81134726 | None:intergenic | 25.0% |
| !! | ATATCATGAGATGTTCTAAA+TGG | - | chr3_1:81134745-81134764 | None:intergenic | 25.0% |
| ! | ATCATGTTGCATATTTGAAT+AGG | + | chr3_1:81135055-81135074 | Msa0379770:three_prime_UTR | 25.0% |
| !! | TTTTGTTGTATATGTGTCGT+TGG | - | chr3_1:81132081-81132100 | None:intergenic | 30.0% |
| GATAGGGATTCTATTATTGA+AGG | + | chr3_1:81132598-81132617 | Msa0379770:CDS | 30.0% | |
| GGATTCTATTATTGAAGGTT+TGG | + | chr3_1:81132603-81132622 | Msa0379770:CDS | 30.0% | |
| AACTTGATCATTTCTACTTC+TGG | - | chr3_1:81132755-81132774 | None:intergenic | 30.0% | |
| !! | TTGTTACTGATTTACGACTT+TGG | + | chr3_1:81132773-81132792 | Msa0379770:CDS | 30.0% |
| GAGTTAATTGTGTACTTTAG+AGG | + | chr3_1:81133178-81133197 | Msa0379770:intron | 30.0% | |
| GGTAAAATAACGATGATGTT+AGG | - | chr3_1:81133212-81133231 | None:intergenic | 30.0% | |
| ! | AGGATGAATTTTTGTCCTTT+AGG | + | chr3_1:81133343-81133362 | Msa0379770:CDS | 30.0% |
| ! | GGATGAATTTTTGTCCTTTA+GGG | + | chr3_1:81133344-81133363 | Msa0379770:CDS | 30.0% |
| ! | GATGAATTTTTGTCCTTTAG+GGG | + | chr3_1:81133345-81133364 | Msa0379770:CDS | 30.0% |
| TTGAAATTGATCCATGTAGT+TGG | + | chr3_1:81133473-81133492 | Msa0379770:intron | 30.0% | |
| !!! | GAATGTTCACGTTTTTTTCT+TGG | + | chr3_1:81133525-81133544 | Msa0379770:intron | 30.0% |
| !! | CATATTGAATAGTATCGATG+CGG | + | chr3_1:81133572-81133591 | Msa0379770:intron | 30.0% |
| ! | TGACAGTGTTAGAACTATTT+TGG | + | chr3_1:81134036-81134055 | Msa0379770:CDS | 30.0% |
| ! | GACAGTGTTAGAACTATTTT+GGG | + | chr3_1:81134037-81134056 | Msa0379770:CDS | 30.0% |
| AAGAATACAAAAGGCTTTAC+CGG | + | chr3_1:81134111-81134130 | Msa0379770:CDS | 30.0% | |
| TATGATATGAAGTGAAAGCA+TGG | + | chr3_1:81134221-81134240 | Msa0379770:intron | 30.0% | |
| !! | CTAGTTTTCCACAATGATTA+TGG | + | chr3_1:81134465-81134484 | Msa0379770:intron | 30.0% |
| !! | TACAATCTTTCCACTTTTAC+AGG | + | chr3_1:81134530-81134549 | Msa0379770:intron | 30.0% |
| TTGCGGAATAAGAAGAAAAT+TGG | - | chr3_1:81134676-81134695 | None:intergenic | 30.0% | |
| CCTGAATGTGAAAGAAAAAA+GGG | - | chr3_1:81134717-81134736 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTCTTTCACATTCA+GGG | + | chr3_1:81134715-81134734 | Msa0379770:intron | 30.0% |
| TATAAATCCAGTCTTTGACA+AGG | + | chr3_1:81134840-81134859 | Msa0379770:CDS | 30.0% | |
| AAGGATGTGTATGAATTTCT+TGG | + | chr3_1:81134859-81134878 | Msa0379770:CDS | 30.0% | |
| ! | TTTATTTCTTATGGTTCCAC+CGG | + | chr3_1:81134904-81134923 | Msa0379770:CDS | 30.0% |
| ! | TTTTCATCCAATAATCGAGT+TGG | - | chr3_1:81134948-81134967 | None:intergenic | 30.0% |
| ATACAACAAAAGTGAACACC+AGG | + | chr3_1:81132090-81132109 | Msa0379770:five_prime_UTR | 35.0% | |
| TACAACAAAAGTGAACACCA+GGG | + | chr3_1:81132091-81132110 | Msa0379770:five_prime_UTR | 35.0% | |
| ! | ACCTTCTTTTAAACGGGAAA+GGG | - | chr3_1:81132120-81132139 | None:intergenic | 35.0% |
| ! | TGTGTCACCTTCTTTTAAAC+GGG | - | chr3_1:81132126-81132145 | None:intergenic | 35.0% |
| ! | GTGTGTCACCTTCTTTTAAA+CGG | - | chr3_1:81132127-81132146 | None:intergenic | 35.0% |
| ! | CCATGGATGAACAATTTTCA+GGG | - | chr3_1:81132181-81132200 | None:intergenic | 35.0% |
| ! | ACCATGGATGAACAATTTTC+AGG | - | chr3_1:81132182-81132201 | None:intergenic | 35.0% |
| ! | TTCGGGTTATGATGAATTTG+CGG | - | chr3_1:81132304-81132323 | None:intergenic | 35.0% |
| AACCCAAAGAAGCTAAACTT+TGG | + | chr3_1:81132354-81132373 | Msa0379770:CDS | 35.0% | |
| ACCCAAAGAAGCTAAACTTT+GGG | + | chr3_1:81132355-81132374 | Msa0379770:CDS | 35.0% | |
| ATTGAAAAGAGAATCGAGAG+TGG | + | chr3_1:81132631-81132650 | Msa0379770:CDS | 35.0% | |
| GAAGTATGTAACTTCTTAGC+AGG | - | chr3_1:81132733-81132752 | None:intergenic | 35.0% | |
| TCAACTTTCATTGCTTAAGC+TGG | + | chr3_1:81132840-81132859 | Msa0379770:CDS | 35.0% | |
| !! | AGAAGGTGCTGTAATAAAAC+AGG | - | chr3_1:81132922-81132941 | None:intergenic | 35.0% |
| GTTTGATTGATTGTAGAGCT+AGG | + | chr3_1:81133323-81133342 | Msa0379770:CDS | 35.0% | |
| GATGTCATGAATCGATCAAT+GGG | - | chr3_1:81133397-81133416 | None:intergenic | 35.0% | |
| ! | CATTGATCGATTCATGACAT+CGG | + | chr3_1:81133396-81133415 | Msa0379770:CDS | 35.0% |
| GTAAGATACCTATTCCTCAT+TGG | - | chr3_1:81133442-81133461 | None:intergenic | 35.0% | |
| GAAAAAGAATCCTGATCCAA+TGG | + | chr3_1:81133755-81133774 | Msa0379770:CDS | 35.0% | |
| AAATCACGATTGTAAGCATG+TGG | - | chr3_1:81133852-81133871 | None:intergenic | 35.0% | |
| !! | AACTATTTTGGGAATGCTTG+AGG | + | chr3_1:81134048-81134067 | Msa0379770:CDS | 35.0% |
| CAATCGGGAAAGAATACAAA+AGG | + | chr3_1:81134102-81134121 | Msa0379770:CDS | 35.0% | |
| ! | CGCTGATTATCTTGTTAAGA+AGG | + | chr3_1:81134159-81134178 | Msa0379770:CDS | 35.0% |
| ! | TTGATTTAGCCTTCAGTTTG+AGG | + | chr3_1:81134191-81134210 | Msa0379770:intron | 35.0% |
| ! | GATTGGTTCATATCTGAACT+TGG | - | chr3_1:81134271-81134290 | None:intergenic | 35.0% |
| ! | CATTAACAGGGATTTGAGAT+TGG | - | chr3_1:81134288-81134307 | None:intergenic | 35.0% |
| CCTTCATTCAAATGGTTCTT+GGG | - | chr3_1:81134391-81134410 | None:intergenic | 35.0% | |
| TCCTTCATTCAAATGGTTCT+TGG | - | chr3_1:81134392-81134411 | None:intergenic | 35.0% | |
| ATTGTGGAAAACTAGTACAG+AGG | - | chr3_1:81134460-81134479 | None:intergenic | 35.0% | |
| !!! | CCCTTTTTTCTTTCACATTC+AGG | + | chr3_1:81134714-81134733 | Msa0379770:intron | 35.0% |
| CCCTGAATGTGAAAGAAAAA+AGG | - | chr3_1:81134718-81134737 | None:intergenic | 35.0% | |
| AGAACATCTCATGATATAGC+AGG | + | chr3_1:81134748-81134767 | Msa0379770:CDS | 35.0% | |
| ATCAAAGAATTGCCAACTGT+TGG | + | chr3_1:81134792-81134811 | Msa0379770:CDS | 35.0% | |
| ! | TTATTTCTTATGGTTCCACC+GGG | + | chr3_1:81134905-81134924 | Msa0379770:CDS | 35.0% |
| ATTTAGCCAAGGTTACTGAA+TGG | + | chr3_1:81135116-81135135 | Msa0379770:three_prime_UTR | 35.0% | |
| TTTAGCCAAGGTTACTGAAT+GGG | + | chr3_1:81135117-81135136 | Msa0379770:three_prime_UTR | 35.0% | |
| TCCCTTTCCCGTTTAAAAGA+AGG | + | chr3_1:81132116-81132135 | Msa0379770:five_prime_UTR | 40.0% | |
| ! | CACCTTCTTTTAAACGGGAA+AGG | - | chr3_1:81132121-81132140 | None:intergenic | 40.0% |
| CCCTGAAAATTGTTCATCCA+TGG | + | chr3_1:81132178-81132197 | Msa0379770:exon | 40.0% | |
| !! | AGTTGTTAAGGTGGTGGAAA+GGG | - | chr3_1:81132261-81132280 | None:intergenic | 40.0% |
| GAATTTGCGGTTAGTGAAAG+TGG | - | chr3_1:81132291-81132310 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTAGCAGCATTGT+TGG | - | chr3_1:81132342-81132361 | None:intergenic | 40.0% |
| ! | CCCCAAAGTTTAGCTTCTTT+GGG | - | chr3_1:81132359-81132378 | None:intergenic | 40.0% |
| CCCAAAGAAGCTAAACTTTG+GGG | + | chr3_1:81132356-81132375 | Msa0379770:CDS | 40.0% | |
| ! | ACCCCAAAGTTTAGCTTCTT+TGG | - | chr3_1:81132360-81132379 | None:intergenic | 40.0% |
| ! | AAAGAAGCTAAACTTTGGGG+TGG | + | chr3_1:81132359-81132378 | Msa0379770:CDS | 40.0% |
| GGATTCAGTGAATCGTTCAA+CGG | - | chr3_1:81132411-81132430 | None:intergenic | 40.0% | |
| TTTGATCAGTGCGAGTGATA+GGG | + | chr3_1:81132582-81132601 | Msa0379770:CDS | 40.0% | |
| TCGAGAGTGGTGAGTTTAAT+TGG | + | chr3_1:81132644-81132663 | Msa0379770:CDS | 40.0% | |
| TAATTGGAGAGCTGATAGAG+AGG | + | chr3_1:81132660-81132679 | Msa0379770:CDS | 40.0% | |
| !! | GCTGCTCTTACTGATTTGAT+TGG | + | chr3_1:81132703-81132722 | Msa0379770:CDS | 40.0% |
| !! | AAGCTGGCTTTGAACAATCA+CGG | + | chr3_1:81132856-81132875 | Msa0379770:CDS | 40.0% |
| !! | AATCACGGTCTTATTGTTCC+TGG | + | chr3_1:81132871-81132890 | Msa0379770:CDS | 40.0% |
| CTTCAACATAAGCAAGCAGA+AGG | - | chr3_1:81132939-81132958 | None:intergenic | 40.0% | |
| TCTGCTTGCTTATGTTGAAG+AGG | + | chr3_1:81132939-81132958 | Msa0379770:CDS | 40.0% | |
| CCACAAGCGAATGAATAAAC+CGG | - | chr3_1:81133233-81133252 | None:intergenic | 40.0% | |
| CGGTTTATTCATTCGCTTGT+GGG | + | chr3_1:81133231-81133250 | Msa0379770:intron | 40.0% | |
| GGTTTATTCATTCGCTTGTG+GGG | + | chr3_1:81133232-81133251 | Msa0379770:intron | 40.0% | |
| CGATGTCATGAATCGATCAA+TGG | - | chr3_1:81133398-81133417 | None:intergenic | 40.0% | |
| ATTCATGACATCGGATGCAT+TGG | + | chr3_1:81133405-81133424 | Msa0379770:CDS | 40.0% | |
| TTCATGACATCGGATGCATT+GGG | + | chr3_1:81133406-81133425 | Msa0379770:CDS | 40.0% | |
| TTACTGCTCCAATGAGGAAT+AGG | + | chr3_1:81133431-81133450 | Msa0379770:CDS | 40.0% | |
| TTTAACATTAGTCCCATGCC+AGG | - | chr3_1:81133500-81133519 | None:intergenic | 40.0% | |
| GAAACTCCAGTAGGAAATCT+CGG | - | chr3_1:81133605-81133624 | None:intergenic | 40.0% | |
| TAACAGAGAGAAACTCCAGT+AGG | - | chr3_1:81133614-81133633 | None:intergenic | 40.0% | |
| ATTCTTCACCAAGTCGAGAA+AGG | - | chr3_1:81133656-81133675 | None:intergenic | 40.0% | |
| !! | TTTCTCGACTTGGTGAAGAA+TGG | + | chr3_1:81133655-81133674 | Msa0379770:CDS | 40.0% |
| !! | TTCTCGACTTGGTGAAGAAT+GGG | + | chr3_1:81133656-81133675 | Msa0379770:CDS | 40.0% |
| TGTTGAAACAGAATCGCTTG+GGG | - | chr3_1:81133715-81133734 | None:intergenic | 40.0% | |
| CTGTTGAAACAGAATCGCTT+GGG | - | chr3_1:81133716-81133735 | None:intergenic | 40.0% | |
| ! | GGATCAGGATTCTTTTTCTG+AGG | - | chr3_1:81133753-81133772 | None:intergenic | 40.0% |
| TTACCACGAACAAGTTCCAT+TGG | - | chr3_1:81133774-81133793 | None:intergenic | 40.0% | |
| ACTCTTCTCACATTGTGCAA+AGG | + | chr3_1:81133822-81133841 | Msa0379770:CDS | 40.0% | |
| ! | TGCTTACAATCGTGATTTGC+AGG | + | chr3_1:81133854-81133873 | Msa0379770:CDS | 40.0% |
| !!! | GGTTGCTTTTGGTTGTAAGT+AGG | + | chr3_1:81133994-81134013 | Msa0379770:intron | 40.0% |
| GTTCTAACACTGTCAAACAC+TGG | - | chr3_1:81134031-81134050 | None:intergenic | 40.0% | |
| TCATATCTGAACTTGGACAG+TGG | - | chr3_1:81134264-81134283 | None:intergenic | 40.0% | |
| ! | GGTACTGGGTTACATTAACA+GGG | - | chr3_1:81134300-81134319 | None:intergenic | 40.0% |
| CTGTTAATGTAACCCAGTAC+CGG | + | chr3_1:81134299-81134318 | Msa0379770:intron | 40.0% | |
| TTTAGATTTACAAGGGCAGC+CGG | - | chr3_1:81134321-81134340 | None:intergenic | 40.0% | |
| AATGGTTCTTGGGAATGAGA+GGG | - | chr3_1:81134381-81134400 | None:intergenic | 40.0% | |
| AAATGGTTCTTGGGAATGAG+AGG | - | chr3_1:81134382-81134401 | None:intergenic | 40.0% | |
| CCCAAGAACCATTTGAATGA+AGG | + | chr3_1:81134388-81134407 | Msa0379770:intron | 40.0% | |
| GTGACTACAACCTGTAAAAG+TGG | - | chr3_1:81134543-81134562 | None:intergenic | 40.0% | |
| AAGAATCGGTGGCATATTTG+CGG | - | chr3_1:81134693-81134712 | None:intergenic | 40.0% | |
| GAAAAAAGGGTAAGAATCGG+TGG | - | chr3_1:81134704-81134723 | None:intergenic | 40.0% | |
| GCAATTCTTTGATGTGCACA+AGG | - | chr3_1:81134785-81134804 | None:intergenic | 40.0% | |
| CAAGACTCAAATCCAACAGT+TGG | - | chr3_1:81134807-81134826 | None:intergenic | 40.0% | |
| TACACATCCTTGTCAAAGAC+TGG | - | chr3_1:81134850-81134869 | None:intergenic | 40.0% | |
| !! | CATCCAATAATCGAGTTGGT+CGG | - | chr3_1:81134944-81134963 | None:intergenic | 40.0% |
| !! | AAGAGTATCCTAGTTGTCAC+TGG | + | chr3_1:81134984-81135003 | Msa0379770:exon | 40.0% |
| ! | AGAGTATCCTAGTTGTCACT+GGG | + | chr3_1:81134985-81135004 | Msa0379770:three_prime_UTR | 40.0% |
| AACTACCCATTCAGTAACCT+TGG | - | chr3_1:81135125-81135144 | None:intergenic | 40.0% | |
| CTACATAAGTTCATGCTGCA+TGG | - | chr3_1:81135222-81135241 | None:intergenic | 40.0% | |
| !! | CGTAGCTGTTTCTAAAGGGT+TGG | + | chr3_1:81132049-81132068 | Msa0379770:five_prime_UTR | 45.0% |
| CGCTGAGAACGCACTTATTT+CGG | + | chr3_1:81132150-81132169 | Msa0379770:five_prime_UTR | 45.0% | |
| GAGAGCTGAAGAGAAAACCA+TGG | - | chr3_1:81132198-81132217 | None:intergenic | 45.0% | |
| !! | GAGTTGTTAAGGTGGTGGAA+AGG | - | chr3_1:81132262-81132281 | None:intergenic | 45.0% |
| ! | AGTGGAGGATCGAGTTGTTA+AGG | - | chr3_1:81132273-81132292 | None:intergenic | 45.0% |
| TTTGCGGTTAGTGAAAGTGG+AGG | - | chr3_1:81132288-81132307 | None:intergenic | 45.0% | |
| !! | AGCAGCATTGTTGGTGGTTT+GGG | - | chr3_1:81132333-81132352 | None:intergenic | 45.0% |
| !! | TAGCAGCATTGTTGGTGGTT+TGG | - | chr3_1:81132334-81132353 | None:intergenic | 45.0% |
| GTTTGATCAGTGCGAGTGAT+AGG | + | chr3_1:81132581-81132600 | Msa0379770:CDS | 45.0% | |
| CGCTGCAAATGAGTATAACC+AGG | - | chr3_1:81132892-81132911 | None:intergenic | 45.0% | |
| CCGGTTTATTCATTCGCTTG+TGG | + | chr3_1:81133230-81133249 | Msa0379770:intron | 45.0% | |
| ATCACGCTCAATCTGCAAGA+GGG | - | chr3_1:81133296-81133315 | None:intergenic | 45.0% | |
| TGGGATTTACTGCTCCAATG+AGG | + | chr3_1:81133425-81133444 | Msa0379770:CDS | 45.0% | |
| TTGATCCATGTAGTTGGACC+TGG | + | chr3_1:81133479-81133498 | Msa0379770:intron | 45.0% | |
| TTCTGACCGAGATTTCCTAC+TGG | + | chr3_1:81133596-81133615 | Msa0379770:CDS | 45.0% | |
| ! | TTGGTGAAGAATGGGTACTG+TGG | + | chr3_1:81133664-81133683 | Msa0379770:CDS | 45.0% |
| ! | TGGTGAAGAATGGGTACTGT+GGG | + | chr3_1:81133665-81133684 | Msa0379770:CDS | 45.0% |
| CCTGTTGAAACAGAATCGCT+TGG | - | chr3_1:81133717-81133736 | None:intergenic | 45.0% | |
| CCAAGCGATTCTGTTTCAAC+AGG | + | chr3_1:81133714-81133733 | Msa0379770:CDS | 45.0% | |
| CGAACAAGTTCCATTGGATC+AGG | - | chr3_1:81133768-81133787 | None:intergenic | 45.0% | |
| ! | GATCCAATGGAACTTGTTCG+TGG | + | chr3_1:81133768-81133787 | Msa0379770:CDS | 45.0% |
| GTAAGTCTGCCAGAGTCATA+GGG | + | chr3_1:81133790-81133809 | Msa0379770:CDS | 45.0% | |
| TAAGTCTGCCAGAGTCATAG+GGG | + | chr3_1:81133791-81133810 | Msa0379770:CDS | 45.0% | |
| AACTGCAGAGAAAACACGCA+AGG | - | chr3_1:81133918-81133937 | None:intergenic | 45.0% | |
| ATACAAAAGGCTTTACCGGC+TGG | + | chr3_1:81134115-81134134 | Msa0379770:CDS | 45.0% | |
| GTTGCATCAAGATAACCAGC+CGG | - | chr3_1:81134133-81134152 | None:intergenic | 45.0% | |
| TATCTGAACTTGGACAGTGG+CGG | - | chr3_1:81134261-81134280 | None:intergenic | 45.0% | |
| ! | CGGTACTGGGTTACATTAAC+AGG | - | chr3_1:81134301-81134320 | None:intergenic | 45.0% |
| TTGCCGACCAACTCGATTAT+TGG | + | chr3_1:81134938-81134957 | Msa0379770:CDS | 45.0% | |
| GAGTATCCTAGTTGTCACTG+GGG | + | chr3_1:81134986-81135005 | Msa0379770:three_prime_UTR | 45.0% | |
| TAAACGGGAAAGGGATTCCC+TGG | - | chr3_1:81132111-81132130 | None:intergenic | 50.0% | |
| !! | TAAGGTGGTGGAAAGGGAGT+GGG | - | chr3_1:81132255-81132274 | None:intergenic | 50.0% |
| !! | TTAAGGTGGTGGAAAGGGAG+TGG | - | chr3_1:81132256-81132275 | None:intergenic | 50.0% |
| ! | GGATCGAGTTGTTAAGGTGG+TGG | - | chr3_1:81132267-81132286 | None:intergenic | 50.0% |
| ! | GGAGGATCGAGTTGTTAAGG+TGG | - | chr3_1:81132270-81132289 | None:intergenic | 50.0% |
| ! | TGGTGGTTTGGGCTTGCATT+CGG | - | chr3_1:81132322-81132341 | None:intergenic | 50.0% |
| GGGTTTAGCAGCATTGTTGG+TGG | - | chr3_1:81132339-81132358 | None:intergenic | 50.0% | |
| TGGGGTGGTAGATTCGAAGA+AGG | + | chr3_1:81132374-81132393 | Msa0379770:CDS | 50.0% | |
| AGTGAATCGTTCAACGGCGT+CGG | - | chr3_1:81132405-81132424 | None:intergenic | 50.0% | |
| TGCATCCATGCTCGCTAAAC+AGG | + | chr3_1:81132484-81132503 | Msa0379770:CDS | 50.0% | |
| CCTAACCTGTTTAGCGAGCA+TGG | - | chr3_1:81132492-81132511 | None:intergenic | 50.0% | |
| CCATGCTCGCTAAACAGGTT+AGG | + | chr3_1:81132489-81132508 | Msa0379770:intron | 50.0% | |
| TCACGCTCAATCTGCAAGAG+GGG | - | chr3_1:81133295-81133314 | None:intergenic | 50.0% | |
| CATCACGCTCAATCTGCAAG+AGG | - | chr3_1:81133297-81133316 | None:intergenic | 50.0% | |
| TTGCAGATTGAGCGTGATGC+TGG | + | chr3_1:81133298-81133317 | Msa0379770:intron | 50.0% | |
| CATGTAGTTGGACCTGGCAT+GGG | + | chr3_1:81133485-81133504 | Msa0379770:intron | 50.0% | |
| ! | AGAAAGGTGCACTGCTGTGA+TGG | - | chr3_1:81133640-81133659 | None:intergenic | 50.0% |
| CTGTGGGCTTCAGAGGAATT+TGG | + | chr3_1:81133681-81133700 | Msa0379770:CDS | 50.0% | |
| GGTAAGTCTGCCAGAGTCAT+AGG | + | chr3_1:81133789-81133808 | Msa0379770:CDS | 50.0% | |
| AAGTCTGCCAGAGTCATAGG+GGG | + | chr3_1:81133792-81133811 | Msa0379770:CDS | 50.0% | |
| ATCTGAACTTGGACAGTGGC+GGG | - | chr3_1:81134260-81134279 | None:intergenic | 50.0% | |
| GCAAGAAGCTCACGACTTCA+AGG | - | chr3_1:81135172-81135191 | None:intergenic | 50.0% | |
| TGGTGGAAAGGGAGTGGGTA+CGG | - | chr3_1:81132250-81132269 | None:intergenic | 55.0% | |
| ! | GGTGGTTTGGGCTTGCATTC+GGG | - | chr3_1:81132321-81132340 | None:intergenic | 55.0% |
| ! | TCCTTTAGGGGCTTGTGCGT+TGG | + | chr3_1:81133357-81133376 | Msa0379770:CDS | 55.0% |
| !! | CTTGTGCGTTGGCTGGTACA+GGG | + | chr3_1:81133368-81133387 | Msa0379770:CDS | 55.0% |
| CCATGCCAGGTCCAACTACA+TGG | - | chr3_1:81133487-81133506 | None:intergenic | 55.0% | |
| CCATGTAGTTGGACCTGGCA+TGG | + | chr3_1:81133484-81133503 | Msa0379770:intron | 55.0% | |
| GCAGTGCACCTTTCTCGACT+TGG | + | chr3_1:81133645-81133664 | Msa0379770:CDS | 55.0% | |
| ! | ATGGGTACTGTGGGCTTCAG+AGG | + | chr3_1:81133674-81133693 | Msa0379770:CDS | 55.0% |
| TGCCAGAGTCATAGGGGGTT+TGG | + | chr3_1:81133797-81133816 | Msa0379770:CDS | 55.0% | |
| GACCAAACCCCCTATGACTC+TGG | - | chr3_1:81133802-81133821 | None:intergenic | 55.0% | |
| TTACAAGGGCAGCCGGTACT+GGG | - | chr3_1:81134314-81134333 | None:intergenic | 55.0% | |
| TTTACAAGGGCAGCCGGTAC+TGG | - | chr3_1:81134315-81134334 | None:intergenic | 55.0% | |
| CAGCTTCCCCAGTGACAACT+AGG | - | chr3_1:81134995-81135014 | None:intergenic | 55.0% | |
| GAGTGGGTACGGAGTGGAGA+GGG | - | chr3_1:81132239-81132258 | None:intergenic | 60.0% | |
| GAAAGGGAGTGGGTACGGAG+TGG | - | chr3_1:81132245-81132264 | None:intergenic | 60.0% | |
| GCCAACGCACAAGCCCCTAA+AGG | - | chr3_1:81133361-81133380 | None:intergenic | 60.0% | |
| ! | TTAGGGGCTTGTGCGTTGGC+TGG | + | chr3_1:81133361-81133380 | Msa0379770:CDS | 60.0% |
| !! | GCTTGTGCGTTGGCTGGTAC+AGG | + | chr3_1:81133367-81133386 | Msa0379770:CDS | 60.0% |
| GTCGGCAACACAAGCAGACC+CGG | - | chr3_1:81134926-81134945 | None:intergenic | 60.0% | |
| GGAGTGGGTACGGAGTGGAG+AGG | - | chr3_1:81132240-81132259 | None:intergenic | 65.0% | |
| GGCAACACAAGCAGACCCGG+TGG | - | chr3_1:81134923-81134942 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81132047 | 81135281 | 81132047 | ID=Msa0379770;Name=Msa0379770 |
| chr3_1 | mRNA | 81132047 | 81135281 | 81132047 | ID=Msa0379770-mRNA-1;Parent=Msa0379770;Name=Msa0379770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150|1|1|1|1|1|6|297|514 |
| chr3_1 | exon | 81132047 | 81132505 | 81132047 | ID=Msa0379770-mRNA-1:exon:20382;Parent=Msa0379770-mRNA-1 |
| chr3_1 | exon | 81132580 | 81132960 | 81132580 | ID=Msa0379770-mRNA-1:exon:20383;Parent=Msa0379770-mRNA-1 |
| chr3_1 | exon | 81133304 | 81133452 | 81133304 | ID=Msa0379770-mRNA-1:exon:20384;Parent=Msa0379770-mRNA-1 |
| chr3_1 | exon | 81133584 | 81133875 | 81133584 | ID=Msa0379770-mRNA-1:exon:20385;Parent=Msa0379770-mRNA-1 |
| chr3_1 | exon | 81134016 | 81134180 | 81134016 | ID=Msa0379770-mRNA-1:exon:20386;Parent=Msa0379770-mRNA-1 |
| chr3_1 | exon | 81134736 | 81135281 | 81134736 | ID=Msa0379770-mRNA-1:exon:20387;Parent=Msa0379770-mRNA-1 |
| chr3_1 | five_prime_UTR | 81132047 | 81132196 | 81132047 | ID=Msa0379770-mRNA-1:five_prime_utr;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81132197 | 81132505 | 81132197 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81132580 | 81132960 | 81132580 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81133304 | 81133452 | 81133304 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81133584 | 81133875 | 81133584 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81134016 | 81134180 | 81134016 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | CDS | 81134736 | 81134984 | 81134736 | ID=Msa0379770-mRNA-1:cds;Parent=Msa0379770-mRNA-1 |
| chr3_1 | three_prime_UTR | 81134985 | 81135281 | 81134985 | ID=Msa0379770-mRNA-1:three_prime_utr;Parent=Msa0379770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
