Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510920 | XP_024633885.1 | 94.872 | 507 | 26 | 0 | 1 | 507 | 1 | 507 | 0.0 | 975 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510920 | I3SGI5 | 94.477 | 507 | 28 | 0 | 1 | 507 | 1 | 507 | 0.0 | 969 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0477080 | Msa0510920 | 0.822490 | 2.304277e-53 | -8.615850e-47 |
Msa0493630 | Msa0510920 | 0.821153 | 4.696538e-53 | -8.615850e-47 |
Msa0510920 | Msa0521430 | 0.810459 | 1.140518e-50 | -8.615850e-47 |
Msa0510920 | Msa0866950 | 0.828665 | 7.924899e-55 | -8.615850e-47 |
Msa0510920 | Msa1437260 | 0.816230 | 6.155725e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510920 | MtrunA17_Chr3g0117161 | 94.602 | 389 | 21 | 0 | 119 | 507 | 1 | 389 | 0.0 | 736 |
Msa0510920 | MtrunA17_Chr3g0117151 | 95.690 | 116 | 5 | 0 | 1 | 116 | 1 | 116 | 8.81e-77 | 236 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510920 | AT4G34140.1 | 39.619 | 578 | 222 | 14 | 2 | 507 | 5 | 527 | 8.24e-109 | 334 |
Msa0510920 | AT4G34140.3 | 39.515 | 577 | 223 | 14 | 2 | 507 | 5 | 526 | 2.18e-108 | 333 |
Msa0510920 | AT4G34140.2 | 39.446 | 578 | 223 | 14 | 2 | 507 | 5 | 527 | 3.06e-108 | 332 |
Msa0510920 | AT4G34140.4 | 44.972 | 358 | 129 | 8 | 212 | 507 | 36 | 387 | 6.25e-83 | 263 |
Msa0510920 | AT4G34140.9 | 44.847 | 359 | 127 | 8 | 212 | 507 | 36 | 386 | 1.85e-82 | 261 |
Msa0510920 | AT4G34140.8 | 44.568 | 359 | 130 | 8 | 212 | 507 | 9 | 361 | 6.02e-82 | 259 |
Msa0510920 | AT4G34140.5 | 44.413 | 358 | 131 | 8 | 212 | 507 | 9 | 360 | 1.48e-81 | 258 |
Msa0510920 | AT4G34140.7 | 44.568 | 359 | 130 | 8 | 212 | 507 | 36 | 388 | 3.10e-81 | 258 |
Msa0510920 | AT4G34140.6 | 45.201 | 323 | 118 | 6 | 244 | 507 | 25 | 347 | 2.77e-76 | 244 |
Msa0510920 | AT4G34140.10 | 41.033 | 368 | 150 | 7 | 12 | 366 | 14 | 327 | 2.88e-76 | 247 |
Find 149 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATTTGTTGAGTTCTTTC+AGG | 0.164384 | 3_4:-60177938 | None:intergenic |
AACTGGATTACCGTGTATTT+AGG | 0.190469 | 3_4:-60181421 | None:intergenic |
CATGCCTTCTAGAAGATTTC+TGG | 0.200653 | 3_4:-60180227 | None:intergenic |
CTACAAAATCTCTTAAACTA+TGG | 0.262255 | 3_4:+60176924 | Msa0510920:exon |
GCCTCTTCTGTAGCTTCTTC+TGG | 0.265752 | 3_4:-60180172 | None:intergenic |
CTTATTGATCTATACTTATC+TGG | 0.274374 | 3_4:+60178380 | Msa0510920:CDS |
GGTGGCTTTGGTGTTGGTCC+AGG | 0.281454 | 3_4:+60180097 | Msa0510920:CDS |
ATAACGATTCTACCTTTGTT+TGG | 0.286937 | 3_4:+60176971 | Msa0510920:CDS |
ATGTTTCCAACTGGCTGAAT+AGG | 0.318885 | 3_4:-60181169 | None:intergenic |
ACTGGATTACCGTGTATTTA+GGG | 0.319680 | 3_4:-60181420 | None:intergenic |
AGTGGAAATACCTTCATCTA+TGG | 0.335384 | 3_4:-60178751 | None:intergenic |
ACAATCAAATGCGATTTAAC+TGG | 0.343342 | 3_4:-60181438 | None:intergenic |
TAACGATTCTACCTTTGTTT+GGG | 0.351558 | 3_4:+60176972 | Msa0510920:CDS |
AACATTGGCAGTGCAGGCTT+GGG | 0.359973 | 3_4:+60181187 | Msa0510920:CDS |
ACAGGCCCAGCAGATGAAAA+TGG | 0.380870 | 3_4:+60178609 | Msa0510920:CDS |
CTATAGTACCAGCCAGCATT+AGG | 0.390043 | 3_4:-60177266 | None:intergenic |
TTTCCGAAATTTGAGGTTCT+GGG | 0.393041 | 3_4:-60176948 | None:intergenic |
CAGTTGTGGACTTGTGGGAC+TGG | 0.396053 | 3_4:+60179187 | Msa0510920:CDS |
GAGGCGTTAAAGATGTCATT+TGG | 0.400128 | 3_4:+60180190 | Msa0510920:CDS |
TTGTTGAGTTCTTTCAGGTT+TGG | 0.403639 | 3_4:-60177933 | None:intergenic |
AAACATTGGCAGTGCAGGCT+TGG | 0.407324 | 3_4:+60181186 | Msa0510920:CDS |
GGACCCAGAACCTCAAATTT+CGG | 0.413387 | 3_4:+60176945 | Msa0510920:CDS |
GGCAAGGTTGGTTGGAAGAC+TGG | 0.422436 | 3_4:+60179251 | Msa0510920:CDS |
CTGCGGATCCAACAAAAGAT+TGG | 0.423198 | 3_4:+60179737 | Msa0510920:CDS |
GTTTCCAGTTGTGGACTTGT+GGG | 0.427219 | 3_4:+60179182 | Msa0510920:CDS |
AGCTTACAGAAATACTGAAA+TGG | 0.427789 | 3_4:+60178572 | Msa0510920:intron |
CAGTCCCACAAGTCCACAAC+TGG | 0.428086 | 3_4:-60179186 | None:intergenic |
GATCTGGTACGCGTCAAAAC+AGG | 0.428981 | 3_4:+60179357 | Msa0510920:CDS |
CCCGCCCTTGTGCAGGGAGA+AGG | 0.431469 | 3_4:+60181115 | Msa0510920:intron |
AGAATCTTGCATGGTGGCTT+TGG | 0.433461 | 3_4:+60180085 | Msa0510920:CDS |
AAAAGATAGGGTGGCAAGGT+TGG | 0.437322 | 3_4:+60179239 | Msa0510920:CDS |
TGCGGATCCAACAAAAGATT+GGG | 0.443261 | 3_4:+60179738 | Msa0510920:CDS |
TACCATTCCGACGGCGGTGG+AGG | 0.443987 | 3_4:-60178268 | None:intergenic |
GCTTCTTCTGGACAAGCATC+AGG | 0.444285 | 3_4:-60180160 | None:intergenic |
AGTTTCCAGTTGTGGACTTG+TGG | 0.448878 | 3_4:+60179181 | Msa0510920:CDS |
GTTGGAAACATTGGCAGTGC+AGG | 0.451094 | 3_4:+60181181 | Msa0510920:CDS |
CTTACCATCCCCTGCTTCCT+CGG | 0.451447 | 3_4:-60178038 | None:intergenic |
GCTTACAGAAATACTGAAAT+GGG | 0.451792 | 3_4:+60178573 | Msa0510920:intron |
TCGAGATGTACTTCGCAGAT+AGG | 0.453801 | 3_4:-60179336 | None:intergenic |
GAGGATTGTTCTTCCTTCCT+CGG | 0.454567 | 3_4:+60177977 | Msa0510920:CDS |
TATGCCAGAAATCTTCTAGA+AGG | 0.454930 | 3_4:+60180223 | Msa0510920:CDS |
CATTGAATCAAGGAAAGATC+TGG | 0.457483 | 3_4:+60179152 | Msa0510920:CDS |
CGCAACTTTACTTCCACGCC+AGG | 0.460124 | 3_4:+60177004 | Msa0510920:CDS |
GGACTTGTGGGACTGGGAAA+TGG | 0.461025 | 3_4:+60179194 | Msa0510920:CDS |
GCACTGCCAATGTTTCCAAC+TGG | 0.470042 | 3_4:-60181178 | None:intergenic |
GTTTATTACAAATTTGAGGA+TGG | 0.471555 | 3_4:+60177302 | Msa0510920:CDS |
TTGCATGGTGGCTTTGGTGT+TGG | 0.471657 | 3_4:+60180091 | Msa0510920:CDS |
CGGTCAAGGTTCCTATCTGT+TGG | 0.472224 | 3_4:-60178018 | None:intergenic |
GTGGCTTTGGTGTTGGTCCA+GGG | 0.472256 | 3_4:+60180098 | Msa0510920:CDS |
TTCAATTTCGTTTCCGAGGA+AGG | 0.473128 | 3_4:-60177990 | None:intergenic |
GATAGGGTGGCAAGGTTGGT+TGG | 0.473323 | 3_4:+60179243 | Msa0510920:CDS |
ATCTTCTAGAAGGCATGGGC+TGG | 0.474580 | 3_4:+60180233 | Msa0510920:CDS |
GGAACCTTGACCGAGGAAGC+AGG | 0.477060 | 3_4:+60178028 | Msa0510920:CDS |
ATTGAAACTAACCAACAGAT+AGG | 0.478031 | 3_4:+60178007 | Msa0510920:CDS |
ACGCAAGTGGCTGGTGCGTA+GGG | 0.481820 | 3_4:-60181350 | None:intergenic |
TCCACAAGTTGGACTGTTCG+TGG | 0.482684 | 3_4:-60178242 | None:intergenic |
GGTCCAGGGCAGAAGAATCT+TGG | 0.483376 | 3_4:+60180112 | Msa0510920:CDS |
CTTGTGCAGGGAGAAGGACT+TGG | 0.487602 | 3_4:+60181121 | Msa0510920:intron |
ACACCAAGATTCTTCTGCCC+TGG | 0.490581 | 3_4:-60180115 | None:intergenic |
GATGTTCTGATATGTTGTTT+CGG | 0.496232 | 3_4:+60176860 | Msa0510920:five_prime_UTR |
TTGGCAGTGCAGGCTTGGGG+TGG | 0.496258 | 3_4:+60181191 | Msa0510920:CDS |
CAGTTCAACAAAAGGCTTGG+TGG | 0.498063 | 3_4:+60181144 | Msa0510920:CDS |
TGGTGTTTATTACAAATTTG+AGG | 0.498375 | 3_4:+60177298 | Msa0510920:CDS |
AAACACATGCTACATTGGTC+TGG | 0.500130 | 3_4:-60181274 | None:intergenic |
CCTACCTTGTTGCAATCTAA+AGG | 0.500574 | 3_4:-60177335 | None:intergenic |
GGACTTGGCAGTTCAACAAA+AGG | 0.504360 | 3_4:+60181136 | Msa0510920:CDS |
AGTTGTGGACTTGTGGGACT+GGG | 0.509025 | 3_4:+60179188 | Msa0510920:CDS |
AAGTCAGCTTTCTGTATCCA+AGG | 0.510213 | 3_4:+60179873 | Msa0510920:CDS |
CAGCCACTTGCGTTAGATCT+CGG | 0.510703 | 3_4:+60181360 | Msa0510920:three_prime_UTR |
TTTGTAATAAACACCATCAC+TGG | 0.513294 | 3_4:-60177291 | None:intergenic |
ATCCCCTGCTTCCTCGGTCA+AGG | 0.516110 | 3_4:-60178032 | None:intergenic |
ACCCTCCACCGCCGTCGGAA+TGG | 0.516570 | 3_4:+60178266 | Msa0510920:CDS |
CTGCGAAGTACATCTCGATC+TGG | 0.518298 | 3_4:+60179341 | Msa0510920:CDS |
ATCATGATCCTAATGCTGGC+TGG | 0.520822 | 3_4:+60177258 | Msa0510920:CDS |
TTATATCCATCGGTTTCCAC+GGG | 0.522689 | 3_4:-60178446 | None:intergenic |
GTTATATCCATCGGTTTCCA+CGG | 0.523283 | 3_4:-60178447 | None:intergenic |
AACTTCTCATTAGAAGCTGA+TGG | 0.525343 | 3_4:+60178467 | Msa0510920:CDS |
CAGAAATCTTCTAGAAGGCA+TGG | 0.525345 | 3_4:+60180228 | Msa0510920:CDS |
TGGCAGTTCAACAAAAGGCT+TGG | 0.525531 | 3_4:+60181141 | Msa0510920:CDS |
GGATACCATTCCGACGGCGG+TGG | 0.526658 | 3_4:-60178271 | None:intergenic |
GGAATTTCAGTTGAAGTGGA+AGG | 0.529631 | 3_4:-60179823 | None:intergenic |
GTGGAACCTATTCAGCCAGT+TGG | 0.535283 | 3_4:+60181163 | Msa0510920:CDS |
ATGGGAGGTGACTGGACCAC+AGG | 0.535287 | 3_4:+60178591 | Msa0510920:CDS |
AACGCAAGTGGCTGGTGCGT+AGG | 0.535703 | 3_4:-60181351 | None:intergenic |
TACATTGGTCTGGTGGTTGA+AGG | 0.536103 | 3_4:-60181264 | None:intergenic |
ATGGTCAAGTCATTGAATCA+AGG | 0.539010 | 3_4:+60179142 | Msa0510920:CDS |
TAATGAGAAGTTATATCCAT+CGG | 0.540938 | 3_4:-60178456 | None:intergenic |
GAAGCCACATATCTCGCACT+TGG | 0.541343 | 3_4:-60179697 | None:intergenic |
GATGAAAATCACTTAGCTGA+TGG | 0.548544 | 3_4:+60178723 | Msa0510920:CDS |
CGAGATCTAACGCAAGTGGC+TGG | 0.549793 | 3_4:-60181359 | None:intergenic |
ATTCAGCCAGTTGGAAACAT+TGG | 0.550272 | 3_4:+60181172 | Msa0510920:CDS |
TCTAGAAGGCATGGGCTGGA+AGG | 0.551981 | 3_4:+60180237 | Msa0510920:CDS |
ATACTGAAATGGGAGGTGAC+TGG | 0.558400 | 3_4:+60178583 | Msa0510920:CDS |
TTTCAACAGAGGAGATAGAT+GGG | 0.558751 | 3_4:-60179296 | None:intergenic |
ACCATTCCGACGGCGGTGGA+GGG | 0.559175 | 3_4:-60178267 | None:intergenic |
AGATTTCTGGCATAACTACC+TGG | 0.559707 | 3_4:-60180214 | None:intergenic |
TTGGATACAGAAAGCTGACT+TGG | 0.564129 | 3_4:-60179871 | None:intergenic |
GAACCTTGACCGAGGAAGCA+GGG | 0.564978 | 3_4:+60178029 | Msa0510920:CDS |
AAACCCAAGTGCGAGATATG+TGG | 0.566437 | 3_4:+60179693 | Msa0510920:CDS |
GATGGAAGTTCCATAGATGA+AGG | 0.567701 | 3_4:+60178741 | Msa0510920:CDS |
GGTGGCCTCGTCGATGAACA+AGG | 0.574701 | 3_4:+60181209 | Msa0510920:exon |
GGTGGAGGGTTTCCACAAGT+TGG | 0.574803 | 3_4:-60178253 | None:intergenic |
TCCACGAACAGTCCAACTTG+TGG | 0.576946 | 3_4:+60178241 | Msa0510920:CDS |
GTGGGTAAATCTTTCGCTGT+AGG | 0.578293 | 3_4:-60179844 | None:intergenic |
TGGAAACCCTCCACCGCCGT+CGG | 0.581504 | 3_4:+60178261 | Msa0510920:CDS |
ATTATCAAGTTATGATTCTG+CGG | 0.582562 | 3_4:+60179720 | Msa0510920:CDS |
GATGCTTATCAAGTAGAAGA+AGG | 0.583550 | 3_4:+60178678 | Msa0510920:CDS |
TCCAGAAGAAGCTACAGAAG+AGG | 0.585922 | 3_4:+60180171 | Msa0510920:CDS |
ACATTGGCAGTGCAGGCTTG+GGG | 0.591205 | 3_4:+60181188 | Msa0510920:CDS |
TGTAGGAATTTCAGTTGAAG+TGG | 0.593062 | 3_4:-60179827 | None:intergenic |
AGAAATCTTCTAGAAGGCAT+GGG | 0.593920 | 3_4:+60180229 | Msa0510920:CDS |
CTGGATTACCGTGTATTTAG+GGG | 0.594159 | 3_4:-60181419 | None:intergenic |
AGAAGGCATGGGCTGGAAGG+AGG | 0.595542 | 3_4:+60180240 | Msa0510920:CDS |
AAGCCACATATCTCGCACTT+GGG | 0.596356 | 3_4:-60179696 | None:intergenic |
TAGTTTCAATTTCGTTTCCG+AGG | 0.598650 | 3_4:-60177994 | None:intergenic |
ATGGAAAAGATAGGGTGGCA+AGG | 0.600283 | 3_4:+60179235 | Msa0510920:CDS |
ACAGACCCCGTGGAAACCGA+TGG | 0.614452 | 3_4:+60178440 | Msa0510920:CDS |
AACCTTGACCGAGGAAGCAG+GGG | 0.617715 | 3_4:+60178030 | Msa0510920:CDS |
CCACCGAGATCTAACGCAAG+TGG | 0.618868 | 3_4:-60181363 | None:intergenic |
TTAAAGATGTCATTTGGACC+AGG | 0.619131 | 3_4:+60180196 | Msa0510920:CDS |
TGTGATGTACAACAATACAT+AGG | 0.619990 | 3_4:-60181394 | None:intergenic |
GGGCAGAAGAATCTTGGTGT+CGG | 0.634541 | 3_4:+60180118 | Msa0510920:CDS |
GAAAGCTGACTTGGCAACGT+GGG | 0.634656 | 3_4:-60179862 | None:intergenic |
TTGACCGAGGAAGCAGGGGA+TGG | 0.636386 | 3_4:+60178034 | Msa0510920:CDS |
ATCAAGTAGAAGAAGGTGAG+TGG | 0.644722 | 3_4:+60178685 | Msa0510920:CDS |
AGGTGGAAAAGAACCTGGCG+TGG | 0.644989 | 3_4:-60177017 | None:intergenic |
AATACAAGACATTAACAATG+AGG | 0.647640 | 3_4:+60177955 | Msa0510920:CDS |
AAAAGATGGAAAAGATAGGG+TGG | 0.647950 | 3_4:+60179230 | Msa0510920:CDS |
GCTGAAAGAAGAATCTTGCA+TGG | 0.649213 | 3_4:+60180076 | Msa0510920:CDS |
TGGTACTATAGCACCAGTGA+TGG | 0.651452 | 3_4:+60177278 | Msa0510920:CDS |
TGTGAGTGTTGCAAATTCAA+AGG | 0.656462 | 3_4:-60181325 | None:intergenic |
ATCACACTCCCCTAAATACA+CGG | 0.657282 | 3_4:+60181411 | Msa0510920:three_prime_UTR |
TTTATATTAGATGATAACTG+AGG | 0.658562 | 3_4:-60179766 | None:intergenic |
ACAAGACATTAACAATGAGG+AGG | 0.664360 | 3_4:+60177958 | Msa0510920:CDS |
TGAGTGGATTCCAGATCCAG+AGG | 0.665421 | 3_4:+60178701 | Msa0510920:CDS |
CACATGCTACATTGGTCTGG+TGG | 0.668772 | 3_4:-60181271 | None:intergenic |
GTCAGCCTTGTTCATCGACG+AGG | 0.669777 | 3_4:-60181214 | None:intergenic |
TACAGAAATACTGAAATGGG+AGG | 0.669814 | 3_4:+60178576 | Msa0510920:CDS |
GAAGGAGGATACCATTCCGA+CGG | 0.673337 | 3_4:-60178277 | None:intergenic |
GGAGGATACCATTCCGACGG+CGG | 0.673907 | 3_4:-60178274 | None:intergenic |
AGAAAGCTGACTTGGCAACG+TGG | 0.688129 | 3_4:-60179863 | None:intergenic |
ATGTCAATATAGAGATCGCG+CGG | 0.698371 | 3_4:+60180054 | Msa0510920:CDS |
GAAAGAAGAATCTTGCATGG+TGG | 0.712797 | 3_4:+60180079 | Msa0510920:CDS |
TGTACCTTTAGATTGCAACA+AGG | 0.717121 | 3_4:+60177331 | Msa0510920:CDS |
TGGTCAAACAATCTGCAAAG+CGG | 0.722667 | 3_4:+60179271 | Msa0510920:CDS |
TATATCCATCGGTTTCCACG+GGG | 0.724216 | 3_4:-60178445 | None:intergenic |
CCACTTGCGTTAGATCTCGG+TGG | 0.727619 | 3_4:+60181363 | Msa0510920:three_prime_UTR |
ACAGATAGGAACCTTGACCG+AGG | 0.745062 | 3_4:+60178021 | Msa0510920:CDS |
TGATACAGTGACAGACCCCG+TGG | 0.770896 | 3_4:+60178430 | Msa0510920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAATTATTTTTTTTTAA+TGG | + | chr3_4:60181070-60181089 | Msa0510920:intron | 0.0% |
!! | ATAAAAAATCAAATTATACA+TGG | - | chr3_4:60179463-60179482 | None:intergenic | 10.0% |
!! | AATTCAAAATTAAAATTCTT+AGG | + | chr3_4:60180309-60180328 | Msa0510920:intron | 10.0% |
!! | ATATAATCATCAATAGAAAA+AGG | - | chr3_4:60178312-60178331 | None:intergenic | 15.0% |
!!! | TAAATTTCATTTTAGAATCA+TGG | + | chr3_4:60179512-60179531 | Msa0510920:intron | 15.0% |
!! | GTATAGTTCATATAAATATA+GGG | - | chr3_4:60180490-60180509 | None:intergenic | 15.0% |
!!! | AAATTTCTACATTTTCTATT+TGG | - | chr3_4:60180742-60180761 | None:intergenic | 15.0% |
!! | AAATAGAAAATGTAGAAATT+TGG | + | chr3_4:60180741-60180760 | Msa0510920:intron | 15.0% |
!!! | TTTTTTATAATGACAAACTT+TGG | + | chr3_4:60180952-60180971 | Msa0510920:intron | 15.0% |
!!! | TATTATTCATAAGCTTGTTA+AGG | - | chr3_4:60177716-60177735 | None:intergenic | 20.0% |
!!! | CAAAAATAGTAATTTCAAGT+TGG | + | chr3_4:60177844-60177863 | Msa0510920:intron | 20.0% |
!! | AATACAGTAATAAAGTTTGA+AGG | - | chr3_4:60178076-60178095 | None:intergenic | 20.0% |
!!! | TGCACATCATAATAATTTTT+TGG | - | chr3_4:60178873-60178892 | None:intergenic | 20.0% |
!! | ATCAAACATATGAACAAAAT+AGG | - | chr3_4:60179072-60179091 | None:intergenic | 20.0% |
!! | GAAATTTACGTATAATAACA+AGG | - | chr3_4:60179500-60179519 | None:intergenic | 20.0% |
!! | AGTTACAATTTATAAGCAAT+AGG | + | chr3_4:60179538-60179557 | Msa0510920:intron | 20.0% |
!! | GTTACAATTTATAAGCAATA+GGG | + | chr3_4:60179539-60179558 | Msa0510920:intron | 20.0% |
!! | TTTCAAAATAAAGCTGTATT+GGG | + | chr3_4:60179582-60179601 | Msa0510920:intron | 20.0% |
!! | TTTATATTAGATGATAACTG+AGG | - | chr3_4:60179769-60179788 | None:intergenic | 20.0% |
!!! | CAATGGTATAGTTTTTAAAT+AGG | - | chr3_4:60180358-60180377 | None:intergenic | 20.0% |
!! | TCTGTTATATATAAGCTAAT+TGG | - | chr3_4:60180387-60180406 | None:intergenic | 20.0% |
!! | TGTGATAATATTAAAAGATC+TGG | + | chr3_4:60180440-60180459 | Msa0510920:intron | 20.0% |
!! | GGTATAGTTCATATAAATAT+AGG | - | chr3_4:60180491-60180510 | None:intergenic | 20.0% |
!! | CATTATTGTATTATTGTACA+TGG | - | chr3_4:60180684-60180703 | None:intergenic | 20.0% |
!! | ATAAAAGTTTATAAAAGAGG+AGG | - | chr3_4:60180811-60180830 | None:intergenic | 20.0% |
!! | TCGATAAAAGTTTATAAAAG+AGG | - | chr3_4:60180814-60180833 | None:intergenic | 20.0% |
!!! | AAATTCACATTGTTTTATGT+TGG | - | chr3_4:60180935-60180954 | None:intergenic | 20.0% |
!!! | GCAAAATTCACAATTTTTAT+CGG | + | chr3_4:60181031-60181050 | Msa0510920:intron | 20.0% |
!!! | CATGTGTTTTTATTATGATT+AGG | + | chr3_4:60181288-60181307 | Msa0510920:three_prime_UTR | 20.0% |
!! | CATAGTTTAAGAGATTTTGT+AGG | - | chr3_4:60176926-60176945 | None:intergenic | 25.0% |
! | CTACAAAATCTCTTAAACTA+TGG | + | chr3_4:60176924-60176943 | Msa0510920:exon | 25.0% |
! | TGGTGTTTATTACAAATTTG+AGG | + | chr3_4:60177298-60177317 | Msa0510920:CDS | 25.0% |
! | GTTTATTACAAATTTGAGGA+TGG | + | chr3_4:60177302-60177321 | Msa0510920:CDS | 25.0% |
! | TATACGTTGAAAACAACATA+TGG | - | chr3_4:60177472-60177491 | None:intergenic | 25.0% |
!! | ATTAAGTTGCTTATCCAAAA+AGG | + | chr3_4:60177566-60177585 | Msa0510920:intron | 25.0% |
!! | TTAAGTTGCTTATCCAAAAA+GGG | + | chr3_4:60177567-60177586 | Msa0510920:intron | 25.0% |
! | TAAGAGATGTAAATGACTTA+GGG | - | chr3_4:60177805-60177824 | None:intergenic | 25.0% |
! | ATAAGAGATGTAAATGACTT+AGG | - | chr3_4:60177806-60177825 | None:intergenic | 25.0% |
!!! | TGATTGAAGTTTTATTGCTT+GGG | + | chr3_4:60177867-60177886 | Msa0510920:intron | 25.0% |
! | AATACAAGACATTAACAATG+AGG | + | chr3_4:60177955-60177974 | Msa0510920:CDS | 25.0% |
! | TTAAAATTAAGCTAACCAAC+AGG | + | chr3_4:60178345-60178364 | Msa0510920:intron | 25.0% |
! | CTTATTGATCTATACTTATC+TGG | + | chr3_4:60178380-60178399 | Msa0510920:CDS | 25.0% |
! | TAATGAGAAGTTATATCCAT+CGG | - | chr3_4:60178459-60178478 | None:intergenic | 25.0% |
! | ACAGAAAAGTTACATAAGTT+AGG | - | chr3_4:60178499-60178518 | None:intergenic | 25.0% |
! | AATTATTATGATGTGCACTA+TGG | + | chr3_4:60178876-60178895 | Msa0510920:intron | 25.0% |
! | ATTATTATGATGTGCACTAT+GGG | + | chr3_4:60178877-60178896 | Msa0510920:intron | 25.0% |
! | GGTATACTGCAAAAATAAAT+GGG | + | chr3_4:60178898-60178917 | Msa0510920:intron | 25.0% |
! | ACTAGATTACTGAATAAACA+AGG | - | chr3_4:60178965-60178984 | None:intergenic | 25.0% |
!! | TGTTTGATTTATACCATTAC+AGG | + | chr3_4:60179084-60179103 | Msa0510920:intron | 25.0% |
! | CAAAAAAGATGGAAAAGATA+GGG | + | chr3_4:60179227-60179246 | Msa0510920:CDS | 25.0% |
!! | TCTAAATTTCTTTTCAACAG+AGG | - | chr3_4:60179310-60179329 | None:intergenic | 25.0% |
! | GTTTCAAAATAAAGCTGTAT+TGG | + | chr3_4:60179581-60179600 | Msa0510920:intron | 25.0% |
! | ATTATCAAGTTATGATTCTG+CGG | + | chr3_4:60179720-60179739 | Msa0510920:CDS | 25.0% |
!! | TATATTGACATTTTATCTGC+TGG | - | chr3_4:60180045-60180064 | None:intergenic | 25.0% |
! | ATATATAACAGAATTGCATC+AGG | + | chr3_4:60180395-60180414 | Msa0510920:intron | 25.0% |
!! | TATGTGTTATCTGAAATTTG+AGG | - | chr3_4:60180467-60180486 | None:intergenic | 25.0% |
!! | TGTACATGGTTTTTCTTTTT+TGG | - | chr3_4:60180670-60180689 | None:intergenic | 25.0% |
! | TAGAAAATGTAGAAATTTGG+AGG | + | chr3_4:60180744-60180763 | Msa0510920:intron | 25.0% |
! | AATAAAAACACATGCTACAT+TGG | - | chr3_4:60181282-60181301 | None:intergenic | 25.0% |
! | GATGTTCTGATATGTTGTTT+CGG | + | chr3_4:60176860-60176879 | Msa0510920:five_prime_UTR | 30.0% |
!! | TCGTTATTTTCCGAAATTTG+AGG | - | chr3_4:60176958-60176977 | None:intergenic | 30.0% |
ATAACGATTCTACCTTTGTT+TGG | + | chr3_4:60176971-60176990 | Msa0510920:CDS | 30.0% | |
! | TAACGATTCTACCTTTGTTT+GGG | + | chr3_4:60176972-60176991 | Msa0510920:CDS | 30.0% |
TTCAAACGTTGTCAAAATGA+AGG | - | chr3_4:60177040-60177059 | None:intergenic | 30.0% | |
!!! | AATTTCTGGTTTTGTTGCAT+AGG | + | chr3_4:60177169-60177188 | Msa0510920:intron | 30.0% |
TTATTAACTTTGTGCAGTAG+TGG | + | chr3_4:60177230-60177249 | Msa0510920:intron | 30.0% | |
! | TTTTATCATGATCCTAATGC+TGG | + | chr3_4:60177254-60177273 | Msa0510920:CDS | 30.0% |
TTTGTAATAAACACCATCAC+TGG | - | chr3_4:60177294-60177313 | None:intergenic | 30.0% | |
ATTTGAACTTATCTATCCAC+TGG | + | chr3_4:60177391-60177410 | Msa0510920:intron | 30.0% | |
!!! | GTGATTGAAGTTTTATTGCT+TGG | + | chr3_4:60177866-60177885 | Msa0510920:intron | 30.0% |
! | TGTATTTGTTGAGTTCTTTC+AGG | - | chr3_4:60177941-60177960 | None:intergenic | 30.0% |
ATTGAAACTAACCAACAGAT+AGG | + | chr3_4:60178007-60178026 | Msa0510920:CDS | 30.0% | |
TACAAAGACATCTACTTAGA+AGG | - | chr3_4:60178206-60178225 | None:intergenic | 30.0% | |
TCATCAATAGAAAAAGGATG+TGG | - | chr3_4:60178306-60178325 | None:intergenic | 30.0% | |
AGCTTACAGAAATACTGAAA+TGG | + | chr3_4:60178572-60178591 | Msa0510920:intron | 30.0% | |
GCTTACAGAAATACTGAAAT+GGG | + | chr3_4:60178573-60178592 | Msa0510920:intron | 30.0% | |
TCATTCTATCTCTATGTACT+TGG | + | chr3_4:60178837-60178856 | Msa0510920:intron | 30.0% | |
GGGTATACTGCAAAAATAAA+TGG | + | chr3_4:60178897-60178916 | Msa0510920:intron | 30.0% | |
AAGGTTCAAGTAACTAAGAA+GGG | + | chr3_4:60178932-60178951 | Msa0510920:intron | 30.0% | |
TCTTGTTCGAAGAAGAAAAA+TGG | + | chr3_4:60179109-60179128 | Msa0510920:CDS | 30.0% | |
! | CCTATCTTTTCCATCTTTTT+TGG | - | chr3_4:60179229-60179248 | None:intergenic | 30.0% |
CCAAAAAAGATGGAAAAGAT+AGG | + | chr3_4:60179226-60179245 | Msa0510920:CDS | 30.0% | |
TTACTCTTGTATTTGCTTAC+TGG | + | chr3_4:60179388-60179407 | Msa0510920:intron | 30.0% | |
! | TATTGTCATGCTCTTTTATC+AGG | + | chr3_4:60179652-60179671 | Msa0510920:intron | 30.0% |
GATGTACTGAATTACATGAA+GGG | - | chr3_4:60179968-60179987 | None:intergenic | 30.0% | |
TGATGTACTGAATTACATGA+AGG | - | chr3_4:60179969-60179988 | None:intergenic | 30.0% | |
AAGTGTTAATGCGTATACAT+TGG | - | chr3_4:60180512-60180531 | None:intergenic | 30.0% | |
GACAATGCATAAAATATGCA+AGG | + | chr3_4:60180619-60180638 | Msa0510920:intron | 30.0% | |
!!! | GGTTTTTCTTTTTTGGTAGT+GGG | - | chr3_4:60180663-60180682 | None:intergenic | 30.0% |
!!! | TGGTTTTTCTTTTTTGGTAG+TGG | - | chr3_4:60180664-60180683 | None:intergenic | 30.0% |
TTAACTCATCCTTACAAAAC+TGG | + | chr3_4:60180767-60180786 | Msa0510920:intron | 30.0% | |
TGTGATGTACAACAATACAT+AGG | - | chr3_4:60181397-60181416 | None:intergenic | 30.0% | |
ACAATCAAATGCGATTTAAC+TGG | - | chr3_4:60181441-60181460 | None:intergenic | 30.0% | |
! | TTTCCGAAATTTGAGGTTCT+GGG | - | chr3_4:60176951-60176970 | None:intergenic | 35.0% |
!! | TTTTCCGAAATTTGAGGTTC+TGG | - | chr3_4:60176952-60176971 | None:intergenic | 35.0% |
AAACGTTGTCAAAATGAAGG+TGG | - | chr3_4:60177037-60177056 | None:intergenic | 35.0% | |
ACAAGCTTGTGCTAAATTTC+TGG | + | chr3_4:60177155-60177174 | Msa0510920:intron | 35.0% | |
TGCATAGGTTTATGCATTTG+TGG | + | chr3_4:60177184-60177203 | Msa0510920:intron | 35.0% | |
TGTACCTTTAGATTGCAACA+AGG | + | chr3_4:60177331-60177350 | Msa0510920:CDS | 35.0% | |
CTTATCCAAAAAGGGTCTAA+GGG | + | chr3_4:60177575-60177594 | Msa0510920:intron | 35.0% | |
TAAATGACTTAGGGACTGTT+TGG | - | chr3_4:60177796-60177815 | None:intergenic | 35.0% | |
!!! | AGTTTTATTGCTTGGGTTTC+AGG | + | chr3_4:60177874-60177893 | Msa0510920:intron | 35.0% |
!! | TTGTTGAGTTCTTTCAGGTT+TGG | - | chr3_4:60177936-60177955 | None:intergenic | 35.0% |
ACAAGACATTAACAATGAGG+AGG | + | chr3_4:60177958-60177977 | Msa0510920:CDS | 35.0% | |
TAGTTTCAATTTCGTTTCCG+AGG | - | chr3_4:60177997-60178016 | None:intergenic | 35.0% | |
TTGAATACTCCTATGCTTTG+AGG | + | chr3_4:60178099-60178118 | Msa0510920:intron | 35.0% | |
AATGTTGATGCTCAAAGCAA+AGG | - | chr3_4:60178139-60178158 | None:intergenic | 35.0% | |
!! | TGCTTTGAGCATCAACATTT+TGG | + | chr3_4:60178140-60178159 | Msa0510920:intron | 35.0% |
CAATAGAAAAAGGATGTGGA+AGG | - | chr3_4:60178302-60178321 | None:intergenic | 35.0% | |
AACTTCTCATTAGAAGCTGA+TGG | + | chr3_4:60178467-60178486 | Msa0510920:CDS | 35.0% | |
CATTCATTTAAGAGCGATCT+CGG | - | chr3_4:60178537-60178556 | None:intergenic | 35.0% | |
TACAGAAATACTGAAATGGG+AGG | + | chr3_4:60178576-60178595 | Msa0510920:CDS | 35.0% | |
GATGCTTATCAAGTAGAAGA+AGG | + | chr3_4:60178678-60178697 | Msa0510920:CDS | 35.0% | |
GATGAAAATCACTTAGCTGA+TGG | + | chr3_4:60178723-60178742 | Msa0510920:CDS | 35.0% | |
AGTGGAAATACCTTCATCTA+TGG | - | chr3_4:60178754-60178773 | None:intergenic | 35.0% | |
!! | TAAATGGGTTGTTTCCTTGA+AGG | + | chr3_4:60178913-60178932 | Msa0510920:intron | 35.0% |
CTTAGTTACTTGAACCTTCA+AGG | - | chr3_4:60178930-60178949 | None:intergenic | 35.0% | |
GAAGGTTCAAGTAACTAAGA+AGG | + | chr3_4:60178931-60178950 | Msa0510920:intron | 35.0% | |
!! | AGACACAAAAGCATTTAGCA+GGG | - | chr3_4:60179000-60179019 | None:intergenic | 35.0% |
ATGGTCAAGTCATTGAATCA+AGG | + | chr3_4:60179142-60179161 | Msa0510920:CDS | 35.0% | |
CATTGAATCAAGGAAAGATC+TGG | + | chr3_4:60179152-60179171 | Msa0510920:CDS | 35.0% | |
AAAAGATGGAAAAGATAGGG+TGG | + | chr3_4:60179230-60179249 | Msa0510920:CDS | 35.0% | |
TTTCAACAGAGGAGATAGAT+GGG | - | chr3_4:60179299-60179318 | None:intergenic | 35.0% | |
! | TTTTCAACAGAGGAGATAGA+TGG | - | chr3_4:60179300-60179319 | None:intergenic | 35.0% |
CTATTATGAAGTCACATGAG+AGG | + | chr3_4:60179434-60179453 | Msa0510920:intron | 35.0% | |
TATAAGCAATAGGGATAGTG+TGG | + | chr3_4:60179548-60179567 | Msa0510920:intron | 35.0% | |
!! | TTAGTGCTAGAAGTACTTCT+TGG | + | chr3_4:60179616-60179635 | Msa0510920:intron | 35.0% |
AGTACTTCTTGGAATGAACA+CGG | + | chr3_4:60179627-60179646 | Msa0510920:intron | 35.0% | |
! | GGAAAATCCCAATCTTTTGT+TGG | - | chr3_4:60179748-60179767 | None:intergenic | 35.0% |
TGTAGGAATTTCAGTTGAAG+TGG | - | chr3_4:60179830-60179849 | None:intergenic | 35.0% | |
CAATTTCCAAGTACAAACCT+TGG | - | chr3_4:60179893-60179912 | None:intergenic | 35.0% | |
ATTACATGAAGGGTGATCAT+GGG | - | chr3_4:60179958-60179977 | None:intergenic | 35.0% | |
AATTACATGAAGGGTGATCA+TGG | - | chr3_4:60179959-60179978 | None:intergenic | 35.0% | |
! | TTAAAGATGTCATTTGGACC+AGG | + | chr3_4:60180196-60180215 | Msa0510920:CDS | 35.0% |
TATGCCAGAAATCTTCTAGA+AGG | + | chr3_4:60180223-60180242 | Msa0510920:CDS | 35.0% | |
! | AGAAATCTTCTAGAAGGCAT+GGG | + | chr3_4:60180229-60180248 | Msa0510920:CDS | 35.0% |
AAGCTAATTGGCAATGTCAA+TGG | - | chr3_4:60180375-60180394 | None:intergenic | 35.0% | |
TGCATAAAATATGCAAGGTC+CGG | + | chr3_4:60180624-60180643 | Msa0510920:intron | 35.0% | |
!! | CTTTACAAGCCAGTTTTGTA+AGG | - | chr3_4:60180779-60180798 | None:intergenic | 35.0% |
!! | TACAAAACTGGCTTGTAAAG+TGG | + | chr3_4:60180779-60180798 | Msa0510920:intron | 35.0% |
!! | ACAAAACTGGCTTGTAAAGT+GGG | + | chr3_4:60180780-60180799 | Msa0510920:intron | 35.0% |
! | GTTGAAGGTAAGTTTTTGTG+TGG | - | chr3_4:60181252-60181271 | None:intergenic | 35.0% |
! | TGTGAGTGTTGCAAATTCAA+AGG | - | chr3_4:60181328-60181347 | None:intergenic | 35.0% |
ACTGGATTACCGTGTATTTA+GGG | - | chr3_4:60181423-60181442 | None:intergenic | 35.0% | |
AACTGGATTACCGTGTATTT+AGG | - | chr3_4:60181424-60181443 | None:intergenic | 35.0% | |
AATGAAGGTGGAAAAGAACC+TGG | - | chr3_4:60177025-60177044 | None:intergenic | 40.0% | |
CCTACCTTGTTGCAATCTAA+AGG | - | chr3_4:60177338-60177357 | None:intergenic | 40.0% | |
CCTTTAGATTGCAACAAGGT+AGG | + | chr3_4:60177335-60177354 | Msa0510920:intron | 40.0% | |
AGATTGCAACAAGGTAGGTT+TGG | + | chr3_4:60177340-60177359 | Msa0510920:intron | 40.0% | |
AATCCAAAGAGACGCTTAGA+AGG | - | chr3_4:60177366-60177385 | None:intergenic | 40.0% | |
TTCTAAGCGTCTCTTTGGAT+TGG | + | chr3_4:60177365-60177384 | Msa0510920:intron | 40.0% | |
GCTTATCCAAAAAGGGTCTA+AGG | + | chr3_4:60177574-60177593 | Msa0510920:intron | 40.0% | |
TTCAATTTCGTTTCCGAGGA+AGG | - | chr3_4:60177993-60178012 | None:intergenic | 40.0% | |
ATCAAGTGTCCTCAAAGCAT+AGG | - | chr3_4:60178111-60178130 | None:intergenic | 40.0% | |
AGAAAAAGGATGTGGAAGGA+AGG | - | chr3_4:60178298-60178317 | None:intergenic | 40.0% | |
AAGTGTGTCTTCTAACCTGT+TGG | - | chr3_4:60178363-60178382 | None:intergenic | 40.0% | |
!! | TTATATCCATCGGTTTCCAC+GGG | - | chr3_4:60178449-60178468 | None:intergenic | 40.0% |
!! | GTTATATCCATCGGTTTCCA+CGG | - | chr3_4:60178450-60178469 | None:intergenic | 40.0% |
!!! | TCATGCCATTTTCATCTGCT+GGG | - | chr3_4:60178617-60178636 | None:intergenic | 40.0% |
ATCAAGTAGAAGAAGGTGAG+TGG | + | chr3_4:60178685-60178704 | Msa0510920:CDS | 40.0% | |
! | TGATTTTCATCCTCTGGATC+TGG | - | chr3_4:60178714-60178733 | None:intergenic | 40.0% |
! | GCTAAGTGATTTTCATCCTC+TGG | - | chr3_4:60178720-60178739 | None:intergenic | 40.0% |
GATGGAAGTTCCATAGATGA+AGG | + | chr3_4:60178741-60178760 | Msa0510920:CDS | 40.0% | |
AGCTTGTGTCTACTACTAAC+TGG | + | chr3_4:60178803-60178822 | Msa0510920:intron | 40.0% | |
!! | GACACAAAAGCATTTAGCAG+GGG | - | chr3_4:60178999-60179018 | None:intergenic | 40.0% |
!! | GAGACACAAAAGCATTTAGC+AGG | - | chr3_4:60179001-60179020 | None:intergenic | 40.0% |
! | AATGCTTTTGTGTCTCTGCA+TGG | + | chr3_4:60179005-60179024 | Msa0510920:intron | 40.0% |
ATGCAATCTCACTTATGGTG+TGG | - | chr3_4:60179048-60179067 | None:intergenic | 40.0% | |
TAGGCATGCAATCTCACTTA+TGG | - | chr3_4:60179053-60179072 | None:intergenic | 40.0% | |
TTCGAACAAGATGCCTGTAA+TGG | - | chr3_4:60179100-60179119 | None:intergenic | 40.0% | |
!!! | GGTTTTAGAGTTTCCAGTTG+TGG | + | chr3_4:60179173-60179192 | Msa0510920:CDS | 40.0% |
! | GTCAGAGCATCCAAAAAAGA+TGG | + | chr3_4:60179216-60179235 | Msa0510920:CDS | 40.0% |
TGGTCAAACAATCTGCAAAG+CGG | + | chr3_4:60179271-60179290 | Msa0510920:CDS | 40.0% | |
TGCGGATCCAACAAAAGATT+GGG | + | chr3_4:60179738-60179757 | Msa0510920:CDS | 40.0% | |
GGAATTTCAGTTGAAGTGGA+AGG | - | chr3_4:60179826-60179845 | None:intergenic | 40.0% | |
TTGGATACAGAAAGCTGACT+TGG | - | chr3_4:60179874-60179893 | None:intergenic | 40.0% | |
AAGTCAGCTTTCTGTATCCA+AGG | + | chr3_4:60179873-60179892 | Msa0510920:CDS | 40.0% | |
CTGTATCCAAGGTTTGTACT+TGG | + | chr3_4:60179884-60179903 | Msa0510920:intron | 40.0% | |
ATGTCAATATAGAGATCGCG+CGG | + | chr3_4:60180054-60180073 | Msa0510920:CDS | 40.0% | |
GCTGAAAGAAGAATCTTGCA+TGG | + | chr3_4:60180076-60180095 | Msa0510920:CDS | 40.0% | |
GAAAGAAGAATCTTGCATGG+TGG | + | chr3_4:60180079-60180098 | Msa0510920:CDS | 40.0% | |
! | GAGGCGTTAAAGATGTCATT+TGG | + | chr3_4:60180190-60180209 | Msa0510920:CDS | 40.0% |
!! | AGATTTCTGGCATAACTACC+TGG | - | chr3_4:60180217-60180236 | None:intergenic | 40.0% |
! | CATGCCTTCTAGAAGATTTC+TGG | - | chr3_4:60180230-60180249 | None:intergenic | 40.0% |
! | CAGAAATCTTCTAGAAGGCA+TGG | + | chr3_4:60180228-60180247 | Msa0510920:CDS | 40.0% |
GCATAAAATATGCAAGGTCC+GGG | + | chr3_4:60180625-60180644 | Msa0510920:intron | 40.0% | |
CATAAAATATGCAAGGTCCG+GGG | + | chr3_4:60180626-60180645 | Msa0510920:intron | 40.0% | |
!! | CAAAACTGGCTTGTAAAGTG+GGG | + | chr3_4:60180781-60180800 | Msa0510920:intron | 40.0% |
AGAGTCCTATCTAACTGATG+TGG | + | chr3_4:60180833-60180852 | Msa0510920:intron | 40.0% | |
GAGTCCTATCTAACTGATGT+GGG | + | chr3_4:60180834-60180853 | Msa0510920:intron | 40.0% | |
TAGTCCCACATCAGTTAGAT+AGG | - | chr3_4:60180841-60180860 | None:intergenic | 40.0% | |
GCAACTCAAATGTCGCAATT+AGG | + | chr3_4:60180875-60180894 | Msa0510920:intron | 40.0% | |
ATGTTTCCAACTGGCTGAAT+AGG | - | chr3_4:60181172-60181191 | None:intergenic | 40.0% | |
ATTCAGCCAGTTGGAAACAT+TGG | + | chr3_4:60181172-60181191 | Msa0510920:CDS | 40.0% | |
AAACACATGCTACATTGGTC+TGG | - | chr3_4:60181277-60181296 | None:intergenic | 40.0% | |
ATCACACTCCCCTAAATACA+CGG | + | chr3_4:60181411-60181430 | Msa0510920:three_prime_UTR | 40.0% | |
CTGGATTACCGTGTATTTAG+GGG | - | chr3_4:60181422-60181441 | None:intergenic | 40.0% | |
GGACCCAGAACCTCAAATTT+CGG | + | chr3_4:60176945-60176964 | Msa0510920:CDS | 45.0% | |
! | CGAGTTTTCGTCCCAAACAA+AGG | - | chr3_4:60176986-60177005 | None:intergenic | 45.0% |
ATCATGATCCTAATGCTGGC+TGG | + | chr3_4:60177258-60177277 | Msa0510920:CDS | 45.0% | |
CTATAGTACCAGCCAGCATT+AGG | - | chr3_4:60177269-60177288 | None:intergenic | 45.0% | |
TGGTACTATAGCACCAGTGA+TGG | + | chr3_4:60177278-60177297 | Msa0510920:CDS | 45.0% | |
! | AACGACCCTTAGACCCTTTT+TGG | - | chr3_4:60177583-60177602 | None:intergenic | 45.0% |
AAAAGGGTCTAAGGGTCGTT+TGG | + | chr3_4:60177583-60177602 | Msa0510920:intron | 45.0% | |
GAGGATTGTTCTTCCTTCCT+CGG | + | chr3_4:60177977-60177996 | Msa0510920:CDS | 45.0% | |
AAAAGGATGTGGAAGGAAGG+AGG | - | chr3_4:60178295-60178314 | None:intergenic | 45.0% | |
!! | TATATCCATCGGTTTCCACG+GGG | - | chr3_4:60178448-60178467 | None:intergenic | 45.0% |
ATACTGAAATGGGAGGTGAC+TGG | + | chr3_4:60178583-60178602 | Msa0510920:CDS | 45.0% | |
!!! | GTCATGCCATTTTCATCTGC+TGG | - | chr3_4:60178618-60178637 | None:intergenic | 45.0% |
GAAAAATGGCGAGCTCAGTA+TGG | + | chr3_4:60179123-60179142 | Msa0510920:CDS | 45.0% | |
AGTTTCCAGTTGTGGACTTG+TGG | + | chr3_4:60179181-60179200 | Msa0510920:CDS | 45.0% | |
GTTTCCAGTTGTGGACTTGT+GGG | + | chr3_4:60179182-60179201 | Msa0510920:CDS | 45.0% | |
ATGGAAAAGATAGGGTGGCA+AGG | + | chr3_4:60179235-60179254 | Msa0510920:CDS | 45.0% | |
AAAAGATAGGGTGGCAAGGT+TGG | + | chr3_4:60179239-60179258 | Msa0510920:CDS | 45.0% | |
TCGAGATGTACTTCGCAGAT+AGG | - | chr3_4:60179339-60179358 | None:intergenic | 45.0% | |
! | TACTGGTACGCGTCTAAAAC+AGG | + | chr3_4:60179405-60179424 | Msa0510920:intron | 45.0% |
TAGGGATAGTGTGGCTTACA+TGG | + | chr3_4:60179557-60179576 | Msa0510920:intron | 45.0% | |
AAACCCAAGTGCGAGATATG+TGG | + | chr3_4:60179693-60179712 | Msa0510920:CDS | 45.0% | |
AAGCCACATATCTCGCACTT+GGG | - | chr3_4:60179699-60179718 | None:intergenic | 45.0% | |
CTGCGGATCCAACAAAAGAT+TGG | + | chr3_4:60179737-60179756 | Msa0510920:CDS | 45.0% | |
GTGGGTAAATCTTTCGCTGT+AGG | - | chr3_4:60179847-60179866 | None:intergenic | 45.0% | |
AGAATCTTGCATGGTGGCTT+TGG | + | chr3_4:60180085-60180104 | Msa0510920:CDS | 45.0% | |
TCCAGAAGAAGCTACAGAAG+AGG | + | chr3_4:60180171-60180190 | Msa0510920:CDS | 45.0% | |
TGAGCTTAGCTCAGTTGGTT+GGG | + | chr3_4:60180597-60180616 | Msa0510920:intron | 45.0% | |
!! | ACATTTGAGTTGCCTCGTGT+TGG | - | chr3_4:60180868-60180887 | None:intergenic | 45.0% |
AATGTCGCAATTAGGCGACT+AGG | + | chr3_4:60180883-60180902 | Msa0510920:intron | 45.0% | |
ATGTCGCAATTAGGCGACTA+GGG | + | chr3_4:60180884-60180903 | Msa0510920:intron | 45.0% | |
GGACTTGGCAGTTCAACAAA+AGG | + | chr3_4:60181136-60181155 | Msa0510920:CDS | 45.0% | |
TGGCAGTTCAACAAAAGGCT+TGG | + | chr3_4:60181141-60181160 | Msa0510920:CDS | 45.0% | |
CAGTTCAACAAAAGGCTTGG+TGG | + | chr3_4:60181144-60181163 | Msa0510920:CDS | 45.0% | |
! | TACATTGGTCTGGTGGTTGA+AGG | - | chr3_4:60181267-60181286 | None:intergenic | 45.0% |
!! | AAAATAATTAAATTATAGAA+TGG | - | chr3_4:60181063-60181082 | None:intergenic | 5.0% |
TGGCCTTCTAAGCGTCTCTT+TGG | + | chr3_4:60177360-60177379 | Msa0510920:intron | 50.0% | |
CTCACAAGTGCTTATGCCAG+TGG | - | chr3_4:60177410-60177429 | None:intergenic | 50.0% | |
GGTCTAAGGGTCGTTTGGAT+TGG | + | chr3_4:60177588-60177607 | Msa0510920:intron | 50.0% | |
CGGTCAAGGTTCCTATCTGT+TGG | - | chr3_4:60178021-60178040 | None:intergenic | 50.0% | |
ACAGATAGGAACCTTGACCG+AGG | + | chr3_4:60178021-60178040 | Msa0510920:CDS | 50.0% | |
TCCACGAACAGTCCAACTTG+TGG | + | chr3_4:60178241-60178260 | Msa0510920:CDS | 50.0% | |
! | TCCACAAGTTGGACTGTTCG+TGG | - | chr3_4:60178245-60178264 | None:intergenic | 50.0% |
GAAGGAGGATACCATTCCGA+CGG | - | chr3_4:60178280-60178299 | None:intergenic | 50.0% | |
! | ATTTTCATCTGCTGGGCCTG+TGG | - | chr3_4:60178610-60178629 | None:intergenic | 50.0% |
ACAGGCCCAGCAGATGAAAA+TGG | + | chr3_4:60178609-60178628 | Msa0510920:CDS | 50.0% | |
! | TGAGTGGATTCCAGATCCAG+AGG | + | chr3_4:60178701-60178720 | Msa0510920:CDS | 50.0% |
CCTTAGACTTGCGAGCAAAG+TGG | - | chr3_4:60178772-60178791 | None:intergenic | 50.0% | |
CCACTTTGCTCGCAAGTCTA+AGG | + | chr3_4:60178769-60178788 | Msa0510920:intron | 50.0% | |
AGTTGTGGACTTGTGGGACT+GGG | + | chr3_4:60179188-60179207 | Msa0510920:CDS | 50.0% | |
CTGCGAAGTACATCTCGATC+TGG | + | chr3_4:60179341-60179360 | Msa0510920:CDS | 50.0% | |
GATCTGGTACGCGTCAAAAC+AGG | + | chr3_4:60179357-60179376 | Msa0510920:CDS | 50.0% | |
GAAGCCACATATCTCGCACT+TGG | - | chr3_4:60179700-60179719 | None:intergenic | 50.0% | |
!! | GAAAGCTGACTTGGCAACGT+GGG | - | chr3_4:60179865-60179884 | None:intergenic | 50.0% |
!! | AGAAAGCTGACTTGGCAACG+TGG | - | chr3_4:60179866-60179885 | None:intergenic | 50.0% |
AAGGGTGATCATGGGAGAAG+GGG | - | chr3_4:60179950-60179969 | None:intergenic | 50.0% | |
GAAGGGTGATCATGGGAGAA+GGG | - | chr3_4:60179951-60179970 | None:intergenic | 50.0% | |
TGAAGGGTGATCATGGGAGA+AGG | - | chr3_4:60179952-60179971 | None:intergenic | 50.0% | |
!! | TTGCATGGTGGCTTTGGTGT+TGG | + | chr3_4:60180091-60180110 | Msa0510920:CDS | 50.0% |
ACACCAAGATTCTTCTGCCC+TGG | - | chr3_4:60180118-60180137 | None:intergenic | 50.0% | |
! | GGGCAGAAGAATCTTGGTGT+CGG | + | chr3_4:60180118-60180137 | Msa0510920:CDS | 50.0% |
GCTTCTTCTGGACAAGCATC+AGG | - | chr3_4:60180163-60180182 | None:intergenic | 50.0% | |
GCCTCTTCTGTAGCTTCTTC+TGG | - | chr3_4:60180175-60180194 | None:intergenic | 50.0% | |
! | ATCTTCTAGAAGGCATGGGC+TGG | + | chr3_4:60180233-60180252 | Msa0510920:CDS | 50.0% |
! | GAGGTATGGACTGAGTTCTC+TGG | + | chr3_4:60180259-60180278 | Msa0510920:intron | 50.0% |
TGCATCAGGTCATCATCACC+AGG | + | chr3_4:60180409-60180428 | Msa0510920:intron | 50.0% | |
GCATCAGGTCATCATCACCA+GGG | + | chr3_4:60180410-60180429 | Msa0510920:intron | 50.0% | |
AAGCTCACGAGGACTGTACA+TGG | - | chr3_4:60180584-60180603 | None:intergenic | 50.0% | |
GTGAGCTTAGCTCAGTTGGT+TGG | + | chr3_4:60180596-60180615 | Msa0510920:intron | 50.0% | |
AGTGGGCAGAATTTGAACCC+CGG | - | chr3_4:60180646-60180665 | None:intergenic | 50.0% | |
TGGGACTAAAAGCCAACACG+AGG | + | chr3_4:60180853-60180872 | Msa0510920:intron | 50.0% | |
TGTCGCAATTAGGCGACTAG+GGG | + | chr3_4:60180885-60180904 | Msa0510920:intron | 50.0% | |
CTAGGGGCAGATCGCAATAA+AGG | + | chr3_4:60180901-60180920 | Msa0510920:intron | 50.0% | |
AAGTCCTTCTCCCTGCACAA+GGG | - | chr3_4:60181122-60181141 | None:intergenic | 50.0% | |
GTGGAACCTATTCAGCCAGT+TGG | + | chr3_4:60181163-60181182 | Msa0510920:CDS | 50.0% | |
GCACTGCCAATGTTTCCAAC+TGG | - | chr3_4:60181181-60181200 | None:intergenic | 50.0% | |
GTTGGAAACATTGGCAGTGC+AGG | + | chr3_4:60181181-60181200 | Msa0510920:CDS | 50.0% | |
AAACATTGGCAGTGCAGGCT+TGG | + | chr3_4:60181186-60181205 | Msa0510920:CDS | 50.0% | |
AACATTGGCAGTGCAGGCTT+GGG | + | chr3_4:60181187-60181206 | Msa0510920:CDS | 50.0% | |
! | CACATGCTACATTGGTCTGG+TGG | - | chr3_4:60181274-60181293 | None:intergenic | 50.0% |
CAGCCACTTGCGTTAGATCT+CGG | + | chr3_4:60181360-60181379 | Msa0510920:three_prime_UTR | 50.0% | |
CGCAACTTTACTTCCACGCC+AGG | + | chr3_4:60177004-60177023 | Msa0510920:CDS | 55.0% | |
AGGTGGAAAAGAACCTGGCG+TGG | - | chr3_4:60177020-60177039 | None:intergenic | 55.0% | |
GAACCTTGACCGAGGAAGCA+GGG | + | chr3_4:60178029-60178048 | Msa0510920:CDS | 55.0% | |
AACCTTGACCGAGGAAGCAG+GGG | + | chr3_4:60178030-60178049 | Msa0510920:CDS | 55.0% | |
CTTACCATCCCCTGCTTCCT+CGG | - | chr3_4:60178041-60178060 | None:intergenic | 55.0% | |
GGTGGAGGGTTTCCACAAGT+TGG | - | chr3_4:60178256-60178275 | None:intergenic | 55.0% | |
TGATACAGTGACAGACCCCG+TGG | + | chr3_4:60178430-60178449 | Msa0510920:CDS | 55.0% | |
AGCATTTAGCAGGGGACTCG+AGG | - | chr3_4:60178991-60179010 | None:intergenic | 55.0% | |
CAGTCCCACAAGTCCACAAC+TGG | - | chr3_4:60179189-60179208 | None:intergenic | 55.0% | |
CAGTTGTGGACTTGTGGGAC+TGG | + | chr3_4:60179187-60179206 | Msa0510920:CDS | 55.0% | |
GGACTTGTGGGACTGGGAAA+TGG | + | chr3_4:60179194-60179213 | Msa0510920:CDS | 55.0% | |
! | GATAGGGTGGCAAGGTTGGT+TGG | + | chr3_4:60179243-60179262 | Msa0510920:CDS | 55.0% |
! | GGCAAGGTTGGTTGGAAGAC+TGG | + | chr3_4:60179251-60179270 | Msa0510920:CDS | 55.0% |
!! | GTGGCTTTGGTGTTGGTCCA+GGG | + | chr3_4:60180098-60180117 | Msa0510920:CDS | 55.0% |
GGTCCAGGGCAGAAGAATCT+TGG | + | chr3_4:60180112-60180131 | Msa0510920:CDS | 55.0% | |
!! | TCTAGAAGGCATGGGCTGGA+AGG | + | chr3_4:60180237-60180256 | Msa0510920:CDS | 55.0% |
TCAGGTCATCATCACCAGGG+CGG | + | chr3_4:60180413-60180432 | Msa0510920:intron | 55.0% | |
TATTATCACACACCCCGCCC+TGG | - | chr3_4:60180430-60180449 | None:intergenic | 55.0% | |
CCAACTGAGCTAAGCTCACG+AGG | - | chr3_4:60180595-60180614 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | + | chr3_4:60180592-60180611 | Msa0510920:intron | 55.0% | |
GGGGCAGATCGCAATAAAGG+CGG | + | chr3_4:60180904-60180923 | Msa0510920:intron | 55.0% | |
CAAGTCCTTCTCCCTGCACA+AGG | - | chr3_4:60181123-60181142 | None:intergenic | 55.0% | |
CTTGTGCAGGGAGAAGGACT+TGG | + | chr3_4:60181121-60181140 | Msa0510920:intron | 55.0% | |
ACATTGGCAGTGCAGGCTTG+GGG | + | chr3_4:60181188-60181207 | Msa0510920:CDS | 55.0% | |
!! | GTCAGCCTTGTTCATCGACG+AGG | - | chr3_4:60181217-60181236 | None:intergenic | 55.0% |
CGAGATCTAACGCAAGTGGC+TGG | - | chr3_4:60181362-60181381 | None:intergenic | 55.0% | |
CCACCGAGATCTAACGCAAG+TGG | - | chr3_4:60181366-60181385 | None:intergenic | 55.0% | |
CCACTTGCGTTAGATCTCGG+TGG | + | chr3_4:60181363-60181382 | Msa0510920:three_prime_UTR | 55.0% | |
GGAACCTTGACCGAGGAAGC+AGG | + | chr3_4:60178028-60178047 | Msa0510920:CDS | 60.0% | |
ATCCCCTGCTTCCTCGGTCA+AGG | - | chr3_4:60178035-60178054 | None:intergenic | 60.0% | |
TTGACCGAGGAAGCAGGGGA+TGG | + | chr3_4:60178034-60178053 | Msa0510920:CDS | 60.0% | |
GGAGGATACCATTCCGACGG+CGG | - | chr3_4:60178277-60178296 | None:intergenic | 60.0% | |
ACAGACCCCGTGGAAACCGA+TGG | + | chr3_4:60178440-60178459 | Msa0510920:CDS | 60.0% | |
ATGGGAGGTGACTGGACCAC+AGG | + | chr3_4:60178591-60178610 | Msa0510920:CDS | 60.0% | |
!! | GGTGGCTTTGGTGTTGGTCC+AGG | + | chr3_4:60180097-60180116 | Msa0510920:CDS | 60.0% |
!! | AGAAGGCATGGGCTGGAAGG+AGG | + | chr3_4:60180240-60180259 | Msa0510920:CDS | 60.0% |
!! | GCATGGGCTGGAAGGAGGTA+TGG | + | chr3_4:60180245-60180264 | Msa0510920:intron | 60.0% |
CAGGTCATCATCACCAGGGC+GGG | + | chr3_4:60180414-60180433 | Msa0510920:intron | 60.0% | |
AGGTCATCATCACCAGGGCG+GGG | + | chr3_4:60180415-60180434 | Msa0510920:intron | 60.0% | |
TTCTGTTCCCGCCCTTGTGC+AGG | + | chr3_4:60181108-60181127 | Msa0510920:intron | 60.0% | |
TCTGTTCCCGCCCTTGTGCA+GGG | + | chr3_4:60181109-60181128 | Msa0510920:intron | 60.0% | |
TCCTTCTCCCTGCACAAGGG+CGG | - | chr3_4:60181119-60181138 | None:intergenic | 60.0% | |
GGTGGCCTCGTCGATGAACA+AGG | + | chr3_4:60181209-60181228 | Msa0510920:exon | 60.0% | |
ACGCAAGTGGCTGGTGCGTA+GGG | - | chr3_4:60181353-60181372 | None:intergenic | 60.0% | |
AACGCAAGTGGCTGGTGCGT+AGG | - | chr3_4:60181354-60181373 | None:intergenic | 60.0% | |
TGGAAACCCTCCACCGCCGT+CGG | + | chr3_4:60178261-60178280 | Msa0510920:CDS | 65.0% | |
ACCATTCCGACGGCGGTGGA+GGG | - | chr3_4:60178270-60178289 | None:intergenic | 65.0% | |
TACCATTCCGACGGCGGTGG+AGG | - | chr3_4:60178271-60178290 | None:intergenic | 65.0% | |
GGATACCATTCCGACGGCGG+TGG | - | chr3_4:60178274-60178293 | None:intergenic | 65.0% | |
CCTTCTCCCTGCACAAGGGC+GGG | - | chr3_4:60181118-60181137 | None:intergenic | 65.0% | |
TTGGCAGTGCAGGCTTGGGG+TGG | + | chr3_4:60181191-60181210 | Msa0510920:CDS | 65.0% | |
ACCCTCCACCGCCGTCGGAA+TGG | + | chr3_4:60178266-60178285 | Msa0510920:CDS | 70.0% | |
CCCGCCCTTGTGCAGGGAGA+AGG | + | chr3_4:60181115-60181134 | Msa0510920:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 60176844 | 60181462 | 60176844 | ID=Msa0510920;Name=Msa0510920 |
chr3_4 | mRNA | 60176844 | 60181462 | 60176844 | ID=Msa0510920-mRNA-1;Parent=Msa0510920;Name=Msa0510920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=99|0.88|0.9|1|1|1|10|237|507 |
chr3_4 | exon | 60176844 | 60177025 | 60176844 | ID=Msa0510920-mRNA-1:exon:14270;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60177247 | 60177352 | 60177247 | ID=Msa0510920-mRNA-1:exon:14271;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60177896 | 60178055 | 60177896 | ID=Msa0510920-mRNA-1:exon:14272;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60178230 | 60178287 | 60178230 | ID=Msa0510920-mRNA-1:exon:14273;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60178367 | 60178488 | 60178367 | ID=Msa0510920-mRNA-1:exon:14274;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60178574 | 60178762 | 60178574 | ID=Msa0510920-mRNA-1:exon:14275;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60179106 | 60179378 | 60179106 | ID=Msa0510920-mRNA-1:exon:14276;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60179674 | 60179894 | 60179674 | ID=Msa0510920-mRNA-1:exon:14277;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60180046 | 60180261 | 60180046 | ID=Msa0510920-mRNA-1:exon:14278;Parent=Msa0510920-mRNA-1 |
chr3_4 | exon | 60181130 | 60181462 | 60181130 | ID=Msa0510920-mRNA-1:exon:14279;Parent=Msa0510920-mRNA-1 |
chr3_4 | five_prime_UTR | 60176844 | 60176942 | 60176844 | ID=Msa0510920-mRNA-1:five_prime_utr;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60176943 | 60177025 | 60176943 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60177247 | 60177352 | 60177247 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60177896 | 60178055 | 60177896 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60178230 | 60178287 | 60178230 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60178367 | 60178488 | 60178367 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60178574 | 60178762 | 60178574 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60179106 | 60179378 | 60179106 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60179674 | 60179894 | 60179674 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60180046 | 60180261 | 60180046 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | CDS | 60181130 | 60181225 | 60181130 | ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1 |
chr3_4 | three_prime_UTR | 60181226 | 60181462 | 60181226 | ID=Msa0510920-mRNA-1:three_prime_utr;Parent=Msa0510920-mRNA-1 |
Gene Sequence |
Protein sequence |