AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510920 MtrunA17_Chr3g0117161 94.602 389 21 0 119 507 1 389 0.0 736
Msa0510920 MtrunA17_Chr3g0117151 95.690 116 5 0 1 116 1 116 8.81e-77 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510920 AT4G34140.1 39.619 578 222 14 2 507 5 527 8.24e-109 334
Msa0510920 AT4G34140.3 39.515 577 223 14 2 507 5 526 2.18e-108 333
Msa0510920 AT4G34140.2 39.446 578 223 14 2 507 5 527 3.06e-108 332
Msa0510920 AT4G34140.4 44.972 358 129 8 212 507 36 387 6.25e-83 263
Msa0510920 AT4G34140.9 44.847 359 127 8 212 507 36 386 1.85e-82 261
Msa0510920 AT4G34140.8 44.568 359 130 8 212 507 9 361 6.02e-82 259
Msa0510920 AT4G34140.5 44.413 358 131 8 212 507 9 360 1.48e-81 258
Msa0510920 AT4G34140.7 44.568 359 130 8 212 507 36 388 3.10e-81 258
Msa0510920 AT4G34140.6 45.201 323 118 6 244 507 25 347 2.77e-76 244
Msa0510920 AT4G34140.10 41.033 368 150 7 12 366 14 327 2.88e-76 247

Find 149 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTGTTGAGTTCTTTC+AGG 0.164384 3_4:-60177938 None:intergenic
AACTGGATTACCGTGTATTT+AGG 0.190469 3_4:-60181421 None:intergenic
CATGCCTTCTAGAAGATTTC+TGG 0.200653 3_4:-60180227 None:intergenic
CTACAAAATCTCTTAAACTA+TGG 0.262255 3_4:+60176924 Msa0510920:exon
GCCTCTTCTGTAGCTTCTTC+TGG 0.265752 3_4:-60180172 None:intergenic
CTTATTGATCTATACTTATC+TGG 0.274374 3_4:+60178380 Msa0510920:CDS
GGTGGCTTTGGTGTTGGTCC+AGG 0.281454 3_4:+60180097 Msa0510920:CDS
ATAACGATTCTACCTTTGTT+TGG 0.286937 3_4:+60176971 Msa0510920:CDS
ATGTTTCCAACTGGCTGAAT+AGG 0.318885 3_4:-60181169 None:intergenic
ACTGGATTACCGTGTATTTA+GGG 0.319680 3_4:-60181420 None:intergenic
AGTGGAAATACCTTCATCTA+TGG 0.335384 3_4:-60178751 None:intergenic
ACAATCAAATGCGATTTAAC+TGG 0.343342 3_4:-60181438 None:intergenic
TAACGATTCTACCTTTGTTT+GGG 0.351558 3_4:+60176972 Msa0510920:CDS
AACATTGGCAGTGCAGGCTT+GGG 0.359973 3_4:+60181187 Msa0510920:CDS
ACAGGCCCAGCAGATGAAAA+TGG 0.380870 3_4:+60178609 Msa0510920:CDS
CTATAGTACCAGCCAGCATT+AGG 0.390043 3_4:-60177266 None:intergenic
TTTCCGAAATTTGAGGTTCT+GGG 0.393041 3_4:-60176948 None:intergenic
CAGTTGTGGACTTGTGGGAC+TGG 0.396053 3_4:+60179187 Msa0510920:CDS
GAGGCGTTAAAGATGTCATT+TGG 0.400128 3_4:+60180190 Msa0510920:CDS
TTGTTGAGTTCTTTCAGGTT+TGG 0.403639 3_4:-60177933 None:intergenic
AAACATTGGCAGTGCAGGCT+TGG 0.407324 3_4:+60181186 Msa0510920:CDS
GGACCCAGAACCTCAAATTT+CGG 0.413387 3_4:+60176945 Msa0510920:CDS
GGCAAGGTTGGTTGGAAGAC+TGG 0.422436 3_4:+60179251 Msa0510920:CDS
CTGCGGATCCAACAAAAGAT+TGG 0.423198 3_4:+60179737 Msa0510920:CDS
GTTTCCAGTTGTGGACTTGT+GGG 0.427219 3_4:+60179182 Msa0510920:CDS
AGCTTACAGAAATACTGAAA+TGG 0.427789 3_4:+60178572 Msa0510920:intron
CAGTCCCACAAGTCCACAAC+TGG 0.428086 3_4:-60179186 None:intergenic
GATCTGGTACGCGTCAAAAC+AGG 0.428981 3_4:+60179357 Msa0510920:CDS
CCCGCCCTTGTGCAGGGAGA+AGG 0.431469 3_4:+60181115 Msa0510920:intron
AGAATCTTGCATGGTGGCTT+TGG 0.433461 3_4:+60180085 Msa0510920:CDS
AAAAGATAGGGTGGCAAGGT+TGG 0.437322 3_4:+60179239 Msa0510920:CDS
TGCGGATCCAACAAAAGATT+GGG 0.443261 3_4:+60179738 Msa0510920:CDS
TACCATTCCGACGGCGGTGG+AGG 0.443987 3_4:-60178268 None:intergenic
GCTTCTTCTGGACAAGCATC+AGG 0.444285 3_4:-60180160 None:intergenic
AGTTTCCAGTTGTGGACTTG+TGG 0.448878 3_4:+60179181 Msa0510920:CDS
GTTGGAAACATTGGCAGTGC+AGG 0.451094 3_4:+60181181 Msa0510920:CDS
CTTACCATCCCCTGCTTCCT+CGG 0.451447 3_4:-60178038 None:intergenic
GCTTACAGAAATACTGAAAT+GGG 0.451792 3_4:+60178573 Msa0510920:intron
TCGAGATGTACTTCGCAGAT+AGG 0.453801 3_4:-60179336 None:intergenic
GAGGATTGTTCTTCCTTCCT+CGG 0.454567 3_4:+60177977 Msa0510920:CDS
TATGCCAGAAATCTTCTAGA+AGG 0.454930 3_4:+60180223 Msa0510920:CDS
CATTGAATCAAGGAAAGATC+TGG 0.457483 3_4:+60179152 Msa0510920:CDS
CGCAACTTTACTTCCACGCC+AGG 0.460124 3_4:+60177004 Msa0510920:CDS
GGACTTGTGGGACTGGGAAA+TGG 0.461025 3_4:+60179194 Msa0510920:CDS
GCACTGCCAATGTTTCCAAC+TGG 0.470042 3_4:-60181178 None:intergenic
GTTTATTACAAATTTGAGGA+TGG 0.471555 3_4:+60177302 Msa0510920:CDS
TTGCATGGTGGCTTTGGTGT+TGG 0.471657 3_4:+60180091 Msa0510920:CDS
CGGTCAAGGTTCCTATCTGT+TGG 0.472224 3_4:-60178018 None:intergenic
GTGGCTTTGGTGTTGGTCCA+GGG 0.472256 3_4:+60180098 Msa0510920:CDS
TTCAATTTCGTTTCCGAGGA+AGG 0.473128 3_4:-60177990 None:intergenic
GATAGGGTGGCAAGGTTGGT+TGG 0.473323 3_4:+60179243 Msa0510920:CDS
ATCTTCTAGAAGGCATGGGC+TGG 0.474580 3_4:+60180233 Msa0510920:CDS
GGAACCTTGACCGAGGAAGC+AGG 0.477060 3_4:+60178028 Msa0510920:CDS
ATTGAAACTAACCAACAGAT+AGG 0.478031 3_4:+60178007 Msa0510920:CDS
ACGCAAGTGGCTGGTGCGTA+GGG 0.481820 3_4:-60181350 None:intergenic
TCCACAAGTTGGACTGTTCG+TGG 0.482684 3_4:-60178242 None:intergenic
GGTCCAGGGCAGAAGAATCT+TGG 0.483376 3_4:+60180112 Msa0510920:CDS
CTTGTGCAGGGAGAAGGACT+TGG 0.487602 3_4:+60181121 Msa0510920:intron
ACACCAAGATTCTTCTGCCC+TGG 0.490581 3_4:-60180115 None:intergenic
GATGTTCTGATATGTTGTTT+CGG 0.496232 3_4:+60176860 Msa0510920:five_prime_UTR
TTGGCAGTGCAGGCTTGGGG+TGG 0.496258 3_4:+60181191 Msa0510920:CDS
CAGTTCAACAAAAGGCTTGG+TGG 0.498063 3_4:+60181144 Msa0510920:CDS
TGGTGTTTATTACAAATTTG+AGG 0.498375 3_4:+60177298 Msa0510920:CDS
AAACACATGCTACATTGGTC+TGG 0.500130 3_4:-60181274 None:intergenic
CCTACCTTGTTGCAATCTAA+AGG 0.500574 3_4:-60177335 None:intergenic
GGACTTGGCAGTTCAACAAA+AGG 0.504360 3_4:+60181136 Msa0510920:CDS
AGTTGTGGACTTGTGGGACT+GGG 0.509025 3_4:+60179188 Msa0510920:CDS
AAGTCAGCTTTCTGTATCCA+AGG 0.510213 3_4:+60179873 Msa0510920:CDS
CAGCCACTTGCGTTAGATCT+CGG 0.510703 3_4:+60181360 Msa0510920:three_prime_UTR
TTTGTAATAAACACCATCAC+TGG 0.513294 3_4:-60177291 None:intergenic
ATCCCCTGCTTCCTCGGTCA+AGG 0.516110 3_4:-60178032 None:intergenic
ACCCTCCACCGCCGTCGGAA+TGG 0.516570 3_4:+60178266 Msa0510920:CDS
CTGCGAAGTACATCTCGATC+TGG 0.518298 3_4:+60179341 Msa0510920:CDS
ATCATGATCCTAATGCTGGC+TGG 0.520822 3_4:+60177258 Msa0510920:CDS
TTATATCCATCGGTTTCCAC+GGG 0.522689 3_4:-60178446 None:intergenic
GTTATATCCATCGGTTTCCA+CGG 0.523283 3_4:-60178447 None:intergenic
AACTTCTCATTAGAAGCTGA+TGG 0.525343 3_4:+60178467 Msa0510920:CDS
CAGAAATCTTCTAGAAGGCA+TGG 0.525345 3_4:+60180228 Msa0510920:CDS
TGGCAGTTCAACAAAAGGCT+TGG 0.525531 3_4:+60181141 Msa0510920:CDS
GGATACCATTCCGACGGCGG+TGG 0.526658 3_4:-60178271 None:intergenic
GGAATTTCAGTTGAAGTGGA+AGG 0.529631 3_4:-60179823 None:intergenic
GTGGAACCTATTCAGCCAGT+TGG 0.535283 3_4:+60181163 Msa0510920:CDS
ATGGGAGGTGACTGGACCAC+AGG 0.535287 3_4:+60178591 Msa0510920:CDS
AACGCAAGTGGCTGGTGCGT+AGG 0.535703 3_4:-60181351 None:intergenic
TACATTGGTCTGGTGGTTGA+AGG 0.536103 3_4:-60181264 None:intergenic
ATGGTCAAGTCATTGAATCA+AGG 0.539010 3_4:+60179142 Msa0510920:CDS
TAATGAGAAGTTATATCCAT+CGG 0.540938 3_4:-60178456 None:intergenic
GAAGCCACATATCTCGCACT+TGG 0.541343 3_4:-60179697 None:intergenic
GATGAAAATCACTTAGCTGA+TGG 0.548544 3_4:+60178723 Msa0510920:CDS
CGAGATCTAACGCAAGTGGC+TGG 0.549793 3_4:-60181359 None:intergenic
ATTCAGCCAGTTGGAAACAT+TGG 0.550272 3_4:+60181172 Msa0510920:CDS
TCTAGAAGGCATGGGCTGGA+AGG 0.551981 3_4:+60180237 Msa0510920:CDS
ATACTGAAATGGGAGGTGAC+TGG 0.558400 3_4:+60178583 Msa0510920:CDS
TTTCAACAGAGGAGATAGAT+GGG 0.558751 3_4:-60179296 None:intergenic
ACCATTCCGACGGCGGTGGA+GGG 0.559175 3_4:-60178267 None:intergenic
AGATTTCTGGCATAACTACC+TGG 0.559707 3_4:-60180214 None:intergenic
TTGGATACAGAAAGCTGACT+TGG 0.564129 3_4:-60179871 None:intergenic
GAACCTTGACCGAGGAAGCA+GGG 0.564978 3_4:+60178029 Msa0510920:CDS
AAACCCAAGTGCGAGATATG+TGG 0.566437 3_4:+60179693 Msa0510920:CDS
GATGGAAGTTCCATAGATGA+AGG 0.567701 3_4:+60178741 Msa0510920:CDS
GGTGGCCTCGTCGATGAACA+AGG 0.574701 3_4:+60181209 Msa0510920:exon
GGTGGAGGGTTTCCACAAGT+TGG 0.574803 3_4:-60178253 None:intergenic
TCCACGAACAGTCCAACTTG+TGG 0.576946 3_4:+60178241 Msa0510920:CDS
GTGGGTAAATCTTTCGCTGT+AGG 0.578293 3_4:-60179844 None:intergenic
TGGAAACCCTCCACCGCCGT+CGG 0.581504 3_4:+60178261 Msa0510920:CDS
ATTATCAAGTTATGATTCTG+CGG 0.582562 3_4:+60179720 Msa0510920:CDS
GATGCTTATCAAGTAGAAGA+AGG 0.583550 3_4:+60178678 Msa0510920:CDS
TCCAGAAGAAGCTACAGAAG+AGG 0.585922 3_4:+60180171 Msa0510920:CDS
ACATTGGCAGTGCAGGCTTG+GGG 0.591205 3_4:+60181188 Msa0510920:CDS
TGTAGGAATTTCAGTTGAAG+TGG 0.593062 3_4:-60179827 None:intergenic
AGAAATCTTCTAGAAGGCAT+GGG 0.593920 3_4:+60180229 Msa0510920:CDS
CTGGATTACCGTGTATTTAG+GGG 0.594159 3_4:-60181419 None:intergenic
AGAAGGCATGGGCTGGAAGG+AGG 0.595542 3_4:+60180240 Msa0510920:CDS
AAGCCACATATCTCGCACTT+GGG 0.596356 3_4:-60179696 None:intergenic
TAGTTTCAATTTCGTTTCCG+AGG 0.598650 3_4:-60177994 None:intergenic
ATGGAAAAGATAGGGTGGCA+AGG 0.600283 3_4:+60179235 Msa0510920:CDS
ACAGACCCCGTGGAAACCGA+TGG 0.614452 3_4:+60178440 Msa0510920:CDS
AACCTTGACCGAGGAAGCAG+GGG 0.617715 3_4:+60178030 Msa0510920:CDS
CCACCGAGATCTAACGCAAG+TGG 0.618868 3_4:-60181363 None:intergenic
TTAAAGATGTCATTTGGACC+AGG 0.619131 3_4:+60180196 Msa0510920:CDS
TGTGATGTACAACAATACAT+AGG 0.619990 3_4:-60181394 None:intergenic
GGGCAGAAGAATCTTGGTGT+CGG 0.634541 3_4:+60180118 Msa0510920:CDS
GAAAGCTGACTTGGCAACGT+GGG 0.634656 3_4:-60179862 None:intergenic
TTGACCGAGGAAGCAGGGGA+TGG 0.636386 3_4:+60178034 Msa0510920:CDS
ATCAAGTAGAAGAAGGTGAG+TGG 0.644722 3_4:+60178685 Msa0510920:CDS
AGGTGGAAAAGAACCTGGCG+TGG 0.644989 3_4:-60177017 None:intergenic
AATACAAGACATTAACAATG+AGG 0.647640 3_4:+60177955 Msa0510920:CDS
AAAAGATGGAAAAGATAGGG+TGG 0.647950 3_4:+60179230 Msa0510920:CDS
GCTGAAAGAAGAATCTTGCA+TGG 0.649213 3_4:+60180076 Msa0510920:CDS
TGGTACTATAGCACCAGTGA+TGG 0.651452 3_4:+60177278 Msa0510920:CDS
TGTGAGTGTTGCAAATTCAA+AGG 0.656462 3_4:-60181325 None:intergenic
ATCACACTCCCCTAAATACA+CGG 0.657282 3_4:+60181411 Msa0510920:three_prime_UTR
TTTATATTAGATGATAACTG+AGG 0.658562 3_4:-60179766 None:intergenic
ACAAGACATTAACAATGAGG+AGG 0.664360 3_4:+60177958 Msa0510920:CDS
TGAGTGGATTCCAGATCCAG+AGG 0.665421 3_4:+60178701 Msa0510920:CDS
CACATGCTACATTGGTCTGG+TGG 0.668772 3_4:-60181271 None:intergenic
GTCAGCCTTGTTCATCGACG+AGG 0.669777 3_4:-60181214 None:intergenic
TACAGAAATACTGAAATGGG+AGG 0.669814 3_4:+60178576 Msa0510920:CDS
GAAGGAGGATACCATTCCGA+CGG 0.673337 3_4:-60178277 None:intergenic
GGAGGATACCATTCCGACGG+CGG 0.673907 3_4:-60178274 None:intergenic
AGAAAGCTGACTTGGCAACG+TGG 0.688129 3_4:-60179863 None:intergenic
ATGTCAATATAGAGATCGCG+CGG 0.698371 3_4:+60180054 Msa0510920:CDS
GAAAGAAGAATCTTGCATGG+TGG 0.712797 3_4:+60180079 Msa0510920:CDS
TGTACCTTTAGATTGCAACA+AGG 0.717121 3_4:+60177331 Msa0510920:CDS
TGGTCAAACAATCTGCAAAG+CGG 0.722667 3_4:+60179271 Msa0510920:CDS
TATATCCATCGGTTTCCACG+GGG 0.724216 3_4:-60178445 None:intergenic
CCACTTGCGTTAGATCTCGG+TGG 0.727619 3_4:+60181363 Msa0510920:three_prime_UTR
ACAGATAGGAACCTTGACCG+AGG 0.745062 3_4:+60178021 Msa0510920:CDS
TGATACAGTGACAGACCCCG+TGG 0.770896 3_4:+60178430 Msa0510920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTATTTTTTTTTAA+TGG + chr3_4:60181070-60181089 Msa0510920:intron 0.0%
!! ATAAAAAATCAAATTATACA+TGG - chr3_4:60179463-60179482 None:intergenic 10.0%
!! AATTCAAAATTAAAATTCTT+AGG + chr3_4:60180309-60180328 Msa0510920:intron 10.0%
!! ATATAATCATCAATAGAAAA+AGG - chr3_4:60178312-60178331 None:intergenic 15.0%
!!! TAAATTTCATTTTAGAATCA+TGG + chr3_4:60179512-60179531 Msa0510920:intron 15.0%
!! GTATAGTTCATATAAATATA+GGG - chr3_4:60180490-60180509 None:intergenic 15.0%
!!! AAATTTCTACATTTTCTATT+TGG - chr3_4:60180742-60180761 None:intergenic 15.0%
!! AAATAGAAAATGTAGAAATT+TGG + chr3_4:60180741-60180760 Msa0510920:intron 15.0%
!!! TTTTTTATAATGACAAACTT+TGG + chr3_4:60180952-60180971 Msa0510920:intron 15.0%
!!! TATTATTCATAAGCTTGTTA+AGG - chr3_4:60177716-60177735 None:intergenic 20.0%
!!! CAAAAATAGTAATTTCAAGT+TGG + chr3_4:60177844-60177863 Msa0510920:intron 20.0%
!! AATACAGTAATAAAGTTTGA+AGG - chr3_4:60178076-60178095 None:intergenic 20.0%
!!! TGCACATCATAATAATTTTT+TGG - chr3_4:60178873-60178892 None:intergenic 20.0%
!! ATCAAACATATGAACAAAAT+AGG - chr3_4:60179072-60179091 None:intergenic 20.0%
!! GAAATTTACGTATAATAACA+AGG - chr3_4:60179500-60179519 None:intergenic 20.0%
!! AGTTACAATTTATAAGCAAT+AGG + chr3_4:60179538-60179557 Msa0510920:intron 20.0%
!! GTTACAATTTATAAGCAATA+GGG + chr3_4:60179539-60179558 Msa0510920:intron 20.0%
!! TTTCAAAATAAAGCTGTATT+GGG + chr3_4:60179582-60179601 Msa0510920:intron 20.0%
!! TTTATATTAGATGATAACTG+AGG - chr3_4:60179769-60179788 None:intergenic 20.0%
!!! CAATGGTATAGTTTTTAAAT+AGG - chr3_4:60180358-60180377 None:intergenic 20.0%
!! TCTGTTATATATAAGCTAAT+TGG - chr3_4:60180387-60180406 None:intergenic 20.0%
!! TGTGATAATATTAAAAGATC+TGG + chr3_4:60180440-60180459 Msa0510920:intron 20.0%
!! GGTATAGTTCATATAAATAT+AGG - chr3_4:60180491-60180510 None:intergenic 20.0%
!! CATTATTGTATTATTGTACA+TGG - chr3_4:60180684-60180703 None:intergenic 20.0%
!! ATAAAAGTTTATAAAAGAGG+AGG - chr3_4:60180811-60180830 None:intergenic 20.0%
!! TCGATAAAAGTTTATAAAAG+AGG - chr3_4:60180814-60180833 None:intergenic 20.0%
!!! AAATTCACATTGTTTTATGT+TGG - chr3_4:60180935-60180954 None:intergenic 20.0%
!!! GCAAAATTCACAATTTTTAT+CGG + chr3_4:60181031-60181050 Msa0510920:intron 20.0%
!!! CATGTGTTTTTATTATGATT+AGG + chr3_4:60181288-60181307 Msa0510920:three_prime_UTR 20.0%
!! CATAGTTTAAGAGATTTTGT+AGG - chr3_4:60176926-60176945 None:intergenic 25.0%
! CTACAAAATCTCTTAAACTA+TGG + chr3_4:60176924-60176943 Msa0510920:exon 25.0%
! TGGTGTTTATTACAAATTTG+AGG + chr3_4:60177298-60177317 Msa0510920:CDS 25.0%
! GTTTATTACAAATTTGAGGA+TGG + chr3_4:60177302-60177321 Msa0510920:CDS 25.0%
! TATACGTTGAAAACAACATA+TGG - chr3_4:60177472-60177491 None:intergenic 25.0%
!! ATTAAGTTGCTTATCCAAAA+AGG + chr3_4:60177566-60177585 Msa0510920:intron 25.0%
!! TTAAGTTGCTTATCCAAAAA+GGG + chr3_4:60177567-60177586 Msa0510920:intron 25.0%
! TAAGAGATGTAAATGACTTA+GGG - chr3_4:60177805-60177824 None:intergenic 25.0%
! ATAAGAGATGTAAATGACTT+AGG - chr3_4:60177806-60177825 None:intergenic 25.0%
!!! TGATTGAAGTTTTATTGCTT+GGG + chr3_4:60177867-60177886 Msa0510920:intron 25.0%
! AATACAAGACATTAACAATG+AGG + chr3_4:60177955-60177974 Msa0510920:CDS 25.0%
! TTAAAATTAAGCTAACCAAC+AGG + chr3_4:60178345-60178364 Msa0510920:intron 25.0%
! CTTATTGATCTATACTTATC+TGG + chr3_4:60178380-60178399 Msa0510920:CDS 25.0%
! TAATGAGAAGTTATATCCAT+CGG - chr3_4:60178459-60178478 None:intergenic 25.0%
! ACAGAAAAGTTACATAAGTT+AGG - chr3_4:60178499-60178518 None:intergenic 25.0%
! AATTATTATGATGTGCACTA+TGG + chr3_4:60178876-60178895 Msa0510920:intron 25.0%
! ATTATTATGATGTGCACTAT+GGG + chr3_4:60178877-60178896 Msa0510920:intron 25.0%
! GGTATACTGCAAAAATAAAT+GGG + chr3_4:60178898-60178917 Msa0510920:intron 25.0%
! ACTAGATTACTGAATAAACA+AGG - chr3_4:60178965-60178984 None:intergenic 25.0%
!! TGTTTGATTTATACCATTAC+AGG + chr3_4:60179084-60179103 Msa0510920:intron 25.0%
! CAAAAAAGATGGAAAAGATA+GGG + chr3_4:60179227-60179246 Msa0510920:CDS 25.0%
!! TCTAAATTTCTTTTCAACAG+AGG - chr3_4:60179310-60179329 None:intergenic 25.0%
! GTTTCAAAATAAAGCTGTAT+TGG + chr3_4:60179581-60179600 Msa0510920:intron 25.0%
! ATTATCAAGTTATGATTCTG+CGG + chr3_4:60179720-60179739 Msa0510920:CDS 25.0%
!! TATATTGACATTTTATCTGC+TGG - chr3_4:60180045-60180064 None:intergenic 25.0%
! ATATATAACAGAATTGCATC+AGG + chr3_4:60180395-60180414 Msa0510920:intron 25.0%
!! TATGTGTTATCTGAAATTTG+AGG - chr3_4:60180467-60180486 None:intergenic 25.0%
!! TGTACATGGTTTTTCTTTTT+TGG - chr3_4:60180670-60180689 None:intergenic 25.0%
! TAGAAAATGTAGAAATTTGG+AGG + chr3_4:60180744-60180763 Msa0510920:intron 25.0%
! AATAAAAACACATGCTACAT+TGG - chr3_4:60181282-60181301 None:intergenic 25.0%
! GATGTTCTGATATGTTGTTT+CGG + chr3_4:60176860-60176879 Msa0510920:five_prime_UTR 30.0%
!! TCGTTATTTTCCGAAATTTG+AGG - chr3_4:60176958-60176977 None:intergenic 30.0%
ATAACGATTCTACCTTTGTT+TGG + chr3_4:60176971-60176990 Msa0510920:CDS 30.0%
! TAACGATTCTACCTTTGTTT+GGG + chr3_4:60176972-60176991 Msa0510920:CDS 30.0%
TTCAAACGTTGTCAAAATGA+AGG - chr3_4:60177040-60177059 None:intergenic 30.0%
!!! AATTTCTGGTTTTGTTGCAT+AGG + chr3_4:60177169-60177188 Msa0510920:intron 30.0%
TTATTAACTTTGTGCAGTAG+TGG + chr3_4:60177230-60177249 Msa0510920:intron 30.0%
! TTTTATCATGATCCTAATGC+TGG + chr3_4:60177254-60177273 Msa0510920:CDS 30.0%
TTTGTAATAAACACCATCAC+TGG - chr3_4:60177294-60177313 None:intergenic 30.0%
ATTTGAACTTATCTATCCAC+TGG + chr3_4:60177391-60177410 Msa0510920:intron 30.0%
!!! GTGATTGAAGTTTTATTGCT+TGG + chr3_4:60177866-60177885 Msa0510920:intron 30.0%
! TGTATTTGTTGAGTTCTTTC+AGG - chr3_4:60177941-60177960 None:intergenic 30.0%
ATTGAAACTAACCAACAGAT+AGG + chr3_4:60178007-60178026 Msa0510920:CDS 30.0%
TACAAAGACATCTACTTAGA+AGG - chr3_4:60178206-60178225 None:intergenic 30.0%
TCATCAATAGAAAAAGGATG+TGG - chr3_4:60178306-60178325 None:intergenic 30.0%
AGCTTACAGAAATACTGAAA+TGG + chr3_4:60178572-60178591 Msa0510920:intron 30.0%
GCTTACAGAAATACTGAAAT+GGG + chr3_4:60178573-60178592 Msa0510920:intron 30.0%
TCATTCTATCTCTATGTACT+TGG + chr3_4:60178837-60178856 Msa0510920:intron 30.0%
GGGTATACTGCAAAAATAAA+TGG + chr3_4:60178897-60178916 Msa0510920:intron 30.0%
AAGGTTCAAGTAACTAAGAA+GGG + chr3_4:60178932-60178951 Msa0510920:intron 30.0%
TCTTGTTCGAAGAAGAAAAA+TGG + chr3_4:60179109-60179128 Msa0510920:CDS 30.0%
! CCTATCTTTTCCATCTTTTT+TGG - chr3_4:60179229-60179248 None:intergenic 30.0%
CCAAAAAAGATGGAAAAGAT+AGG + chr3_4:60179226-60179245 Msa0510920:CDS 30.0%
TTACTCTTGTATTTGCTTAC+TGG + chr3_4:60179388-60179407 Msa0510920:intron 30.0%
! TATTGTCATGCTCTTTTATC+AGG + chr3_4:60179652-60179671 Msa0510920:intron 30.0%
GATGTACTGAATTACATGAA+GGG - chr3_4:60179968-60179987 None:intergenic 30.0%
TGATGTACTGAATTACATGA+AGG - chr3_4:60179969-60179988 None:intergenic 30.0%
AAGTGTTAATGCGTATACAT+TGG - chr3_4:60180512-60180531 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr3_4:60180619-60180638 Msa0510920:intron 30.0%
!!! GGTTTTTCTTTTTTGGTAGT+GGG - chr3_4:60180663-60180682 None:intergenic 30.0%
!!! TGGTTTTTCTTTTTTGGTAG+TGG - chr3_4:60180664-60180683 None:intergenic 30.0%
TTAACTCATCCTTACAAAAC+TGG + chr3_4:60180767-60180786 Msa0510920:intron 30.0%
TGTGATGTACAACAATACAT+AGG - chr3_4:60181397-60181416 None:intergenic 30.0%
ACAATCAAATGCGATTTAAC+TGG - chr3_4:60181441-60181460 None:intergenic 30.0%
! TTTCCGAAATTTGAGGTTCT+GGG - chr3_4:60176951-60176970 None:intergenic 35.0%
!! TTTTCCGAAATTTGAGGTTC+TGG - chr3_4:60176952-60176971 None:intergenic 35.0%
AAACGTTGTCAAAATGAAGG+TGG - chr3_4:60177037-60177056 None:intergenic 35.0%
ACAAGCTTGTGCTAAATTTC+TGG + chr3_4:60177155-60177174 Msa0510920:intron 35.0%
TGCATAGGTTTATGCATTTG+TGG + chr3_4:60177184-60177203 Msa0510920:intron 35.0%
TGTACCTTTAGATTGCAACA+AGG + chr3_4:60177331-60177350 Msa0510920:CDS 35.0%
CTTATCCAAAAAGGGTCTAA+GGG + chr3_4:60177575-60177594 Msa0510920:intron 35.0%
TAAATGACTTAGGGACTGTT+TGG - chr3_4:60177796-60177815 None:intergenic 35.0%
!!! AGTTTTATTGCTTGGGTTTC+AGG + chr3_4:60177874-60177893 Msa0510920:intron 35.0%
!! TTGTTGAGTTCTTTCAGGTT+TGG - chr3_4:60177936-60177955 None:intergenic 35.0%
ACAAGACATTAACAATGAGG+AGG + chr3_4:60177958-60177977 Msa0510920:CDS 35.0%
TAGTTTCAATTTCGTTTCCG+AGG - chr3_4:60177997-60178016 None:intergenic 35.0%
TTGAATACTCCTATGCTTTG+AGG + chr3_4:60178099-60178118 Msa0510920:intron 35.0%
AATGTTGATGCTCAAAGCAA+AGG - chr3_4:60178139-60178158 None:intergenic 35.0%
!! TGCTTTGAGCATCAACATTT+TGG + chr3_4:60178140-60178159 Msa0510920:intron 35.0%
CAATAGAAAAAGGATGTGGA+AGG - chr3_4:60178302-60178321 None:intergenic 35.0%
AACTTCTCATTAGAAGCTGA+TGG + chr3_4:60178467-60178486 Msa0510920:CDS 35.0%
CATTCATTTAAGAGCGATCT+CGG - chr3_4:60178537-60178556 None:intergenic 35.0%
TACAGAAATACTGAAATGGG+AGG + chr3_4:60178576-60178595 Msa0510920:CDS 35.0%
GATGCTTATCAAGTAGAAGA+AGG + chr3_4:60178678-60178697 Msa0510920:CDS 35.0%
GATGAAAATCACTTAGCTGA+TGG + chr3_4:60178723-60178742 Msa0510920:CDS 35.0%
AGTGGAAATACCTTCATCTA+TGG - chr3_4:60178754-60178773 None:intergenic 35.0%
!! TAAATGGGTTGTTTCCTTGA+AGG + chr3_4:60178913-60178932 Msa0510920:intron 35.0%
CTTAGTTACTTGAACCTTCA+AGG - chr3_4:60178930-60178949 None:intergenic 35.0%
GAAGGTTCAAGTAACTAAGA+AGG + chr3_4:60178931-60178950 Msa0510920:intron 35.0%
!! AGACACAAAAGCATTTAGCA+GGG - chr3_4:60179000-60179019 None:intergenic 35.0%
ATGGTCAAGTCATTGAATCA+AGG + chr3_4:60179142-60179161 Msa0510920:CDS 35.0%
CATTGAATCAAGGAAAGATC+TGG + chr3_4:60179152-60179171 Msa0510920:CDS 35.0%
AAAAGATGGAAAAGATAGGG+TGG + chr3_4:60179230-60179249 Msa0510920:CDS 35.0%
TTTCAACAGAGGAGATAGAT+GGG - chr3_4:60179299-60179318 None:intergenic 35.0%
! TTTTCAACAGAGGAGATAGA+TGG - chr3_4:60179300-60179319 None:intergenic 35.0%
CTATTATGAAGTCACATGAG+AGG + chr3_4:60179434-60179453 Msa0510920:intron 35.0%
TATAAGCAATAGGGATAGTG+TGG + chr3_4:60179548-60179567 Msa0510920:intron 35.0%
!! TTAGTGCTAGAAGTACTTCT+TGG + chr3_4:60179616-60179635 Msa0510920:intron 35.0%
AGTACTTCTTGGAATGAACA+CGG + chr3_4:60179627-60179646 Msa0510920:intron 35.0%
! GGAAAATCCCAATCTTTTGT+TGG - chr3_4:60179748-60179767 None:intergenic 35.0%
TGTAGGAATTTCAGTTGAAG+TGG - chr3_4:60179830-60179849 None:intergenic 35.0%
CAATTTCCAAGTACAAACCT+TGG - chr3_4:60179893-60179912 None:intergenic 35.0%
ATTACATGAAGGGTGATCAT+GGG - chr3_4:60179958-60179977 None:intergenic 35.0%
AATTACATGAAGGGTGATCA+TGG - chr3_4:60179959-60179978 None:intergenic 35.0%
! TTAAAGATGTCATTTGGACC+AGG + chr3_4:60180196-60180215 Msa0510920:CDS 35.0%
TATGCCAGAAATCTTCTAGA+AGG + chr3_4:60180223-60180242 Msa0510920:CDS 35.0%
! AGAAATCTTCTAGAAGGCAT+GGG + chr3_4:60180229-60180248 Msa0510920:CDS 35.0%
AAGCTAATTGGCAATGTCAA+TGG - chr3_4:60180375-60180394 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr3_4:60180624-60180643 Msa0510920:intron 35.0%
!! CTTTACAAGCCAGTTTTGTA+AGG - chr3_4:60180779-60180798 None:intergenic 35.0%
!! TACAAAACTGGCTTGTAAAG+TGG + chr3_4:60180779-60180798 Msa0510920:intron 35.0%
!! ACAAAACTGGCTTGTAAAGT+GGG + chr3_4:60180780-60180799 Msa0510920:intron 35.0%
! GTTGAAGGTAAGTTTTTGTG+TGG - chr3_4:60181252-60181271 None:intergenic 35.0%
! TGTGAGTGTTGCAAATTCAA+AGG - chr3_4:60181328-60181347 None:intergenic 35.0%
ACTGGATTACCGTGTATTTA+GGG - chr3_4:60181423-60181442 None:intergenic 35.0%
AACTGGATTACCGTGTATTT+AGG - chr3_4:60181424-60181443 None:intergenic 35.0%
AATGAAGGTGGAAAAGAACC+TGG - chr3_4:60177025-60177044 None:intergenic 40.0%
CCTACCTTGTTGCAATCTAA+AGG - chr3_4:60177338-60177357 None:intergenic 40.0%
CCTTTAGATTGCAACAAGGT+AGG + chr3_4:60177335-60177354 Msa0510920:intron 40.0%
AGATTGCAACAAGGTAGGTT+TGG + chr3_4:60177340-60177359 Msa0510920:intron 40.0%
AATCCAAAGAGACGCTTAGA+AGG - chr3_4:60177366-60177385 None:intergenic 40.0%
TTCTAAGCGTCTCTTTGGAT+TGG + chr3_4:60177365-60177384 Msa0510920:intron 40.0%
GCTTATCCAAAAAGGGTCTA+AGG + chr3_4:60177574-60177593 Msa0510920:intron 40.0%
TTCAATTTCGTTTCCGAGGA+AGG - chr3_4:60177993-60178012 None:intergenic 40.0%
ATCAAGTGTCCTCAAAGCAT+AGG - chr3_4:60178111-60178130 None:intergenic 40.0%
AGAAAAAGGATGTGGAAGGA+AGG - chr3_4:60178298-60178317 None:intergenic 40.0%
AAGTGTGTCTTCTAACCTGT+TGG - chr3_4:60178363-60178382 None:intergenic 40.0%
!! TTATATCCATCGGTTTCCAC+GGG - chr3_4:60178449-60178468 None:intergenic 40.0%
!! GTTATATCCATCGGTTTCCA+CGG - chr3_4:60178450-60178469 None:intergenic 40.0%
!!! TCATGCCATTTTCATCTGCT+GGG - chr3_4:60178617-60178636 None:intergenic 40.0%
ATCAAGTAGAAGAAGGTGAG+TGG + chr3_4:60178685-60178704 Msa0510920:CDS 40.0%
! TGATTTTCATCCTCTGGATC+TGG - chr3_4:60178714-60178733 None:intergenic 40.0%
! GCTAAGTGATTTTCATCCTC+TGG - chr3_4:60178720-60178739 None:intergenic 40.0%
GATGGAAGTTCCATAGATGA+AGG + chr3_4:60178741-60178760 Msa0510920:CDS 40.0%
AGCTTGTGTCTACTACTAAC+TGG + chr3_4:60178803-60178822 Msa0510920:intron 40.0%
!! GACACAAAAGCATTTAGCAG+GGG - chr3_4:60178999-60179018 None:intergenic 40.0%
!! GAGACACAAAAGCATTTAGC+AGG - chr3_4:60179001-60179020 None:intergenic 40.0%
! AATGCTTTTGTGTCTCTGCA+TGG + chr3_4:60179005-60179024 Msa0510920:intron 40.0%
ATGCAATCTCACTTATGGTG+TGG - chr3_4:60179048-60179067 None:intergenic 40.0%
TAGGCATGCAATCTCACTTA+TGG - chr3_4:60179053-60179072 None:intergenic 40.0%
TTCGAACAAGATGCCTGTAA+TGG - chr3_4:60179100-60179119 None:intergenic 40.0%
!!! GGTTTTAGAGTTTCCAGTTG+TGG + chr3_4:60179173-60179192 Msa0510920:CDS 40.0%
! GTCAGAGCATCCAAAAAAGA+TGG + chr3_4:60179216-60179235 Msa0510920:CDS 40.0%
TGGTCAAACAATCTGCAAAG+CGG + chr3_4:60179271-60179290 Msa0510920:CDS 40.0%
TGCGGATCCAACAAAAGATT+GGG + chr3_4:60179738-60179757 Msa0510920:CDS 40.0%
GGAATTTCAGTTGAAGTGGA+AGG - chr3_4:60179826-60179845 None:intergenic 40.0%
TTGGATACAGAAAGCTGACT+TGG - chr3_4:60179874-60179893 None:intergenic 40.0%
AAGTCAGCTTTCTGTATCCA+AGG + chr3_4:60179873-60179892 Msa0510920:CDS 40.0%
CTGTATCCAAGGTTTGTACT+TGG + chr3_4:60179884-60179903 Msa0510920:intron 40.0%
ATGTCAATATAGAGATCGCG+CGG + chr3_4:60180054-60180073 Msa0510920:CDS 40.0%
GCTGAAAGAAGAATCTTGCA+TGG + chr3_4:60180076-60180095 Msa0510920:CDS 40.0%
GAAAGAAGAATCTTGCATGG+TGG + chr3_4:60180079-60180098 Msa0510920:CDS 40.0%
! GAGGCGTTAAAGATGTCATT+TGG + chr3_4:60180190-60180209 Msa0510920:CDS 40.0%
!! AGATTTCTGGCATAACTACC+TGG - chr3_4:60180217-60180236 None:intergenic 40.0%
! CATGCCTTCTAGAAGATTTC+TGG - chr3_4:60180230-60180249 None:intergenic 40.0%
! CAGAAATCTTCTAGAAGGCA+TGG + chr3_4:60180228-60180247 Msa0510920:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr3_4:60180625-60180644 Msa0510920:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr3_4:60180626-60180645 Msa0510920:intron 40.0%
!! CAAAACTGGCTTGTAAAGTG+GGG + chr3_4:60180781-60180800 Msa0510920:intron 40.0%
AGAGTCCTATCTAACTGATG+TGG + chr3_4:60180833-60180852 Msa0510920:intron 40.0%
GAGTCCTATCTAACTGATGT+GGG + chr3_4:60180834-60180853 Msa0510920:intron 40.0%
TAGTCCCACATCAGTTAGAT+AGG - chr3_4:60180841-60180860 None:intergenic 40.0%
GCAACTCAAATGTCGCAATT+AGG + chr3_4:60180875-60180894 Msa0510920:intron 40.0%
ATGTTTCCAACTGGCTGAAT+AGG - chr3_4:60181172-60181191 None:intergenic 40.0%
ATTCAGCCAGTTGGAAACAT+TGG + chr3_4:60181172-60181191 Msa0510920:CDS 40.0%
AAACACATGCTACATTGGTC+TGG - chr3_4:60181277-60181296 None:intergenic 40.0%
ATCACACTCCCCTAAATACA+CGG + chr3_4:60181411-60181430 Msa0510920:three_prime_UTR 40.0%
CTGGATTACCGTGTATTTAG+GGG - chr3_4:60181422-60181441 None:intergenic 40.0%
GGACCCAGAACCTCAAATTT+CGG + chr3_4:60176945-60176964 Msa0510920:CDS 45.0%
! CGAGTTTTCGTCCCAAACAA+AGG - chr3_4:60176986-60177005 None:intergenic 45.0%
ATCATGATCCTAATGCTGGC+TGG + chr3_4:60177258-60177277 Msa0510920:CDS 45.0%
CTATAGTACCAGCCAGCATT+AGG - chr3_4:60177269-60177288 None:intergenic 45.0%
TGGTACTATAGCACCAGTGA+TGG + chr3_4:60177278-60177297 Msa0510920:CDS 45.0%
! AACGACCCTTAGACCCTTTT+TGG - chr3_4:60177583-60177602 None:intergenic 45.0%
AAAAGGGTCTAAGGGTCGTT+TGG + chr3_4:60177583-60177602 Msa0510920:intron 45.0%
GAGGATTGTTCTTCCTTCCT+CGG + chr3_4:60177977-60177996 Msa0510920:CDS 45.0%
AAAAGGATGTGGAAGGAAGG+AGG - chr3_4:60178295-60178314 None:intergenic 45.0%
!! TATATCCATCGGTTTCCACG+GGG - chr3_4:60178448-60178467 None:intergenic 45.0%
ATACTGAAATGGGAGGTGAC+TGG + chr3_4:60178583-60178602 Msa0510920:CDS 45.0%
!!! GTCATGCCATTTTCATCTGC+TGG - chr3_4:60178618-60178637 None:intergenic 45.0%
GAAAAATGGCGAGCTCAGTA+TGG + chr3_4:60179123-60179142 Msa0510920:CDS 45.0%
AGTTTCCAGTTGTGGACTTG+TGG + chr3_4:60179181-60179200 Msa0510920:CDS 45.0%
GTTTCCAGTTGTGGACTTGT+GGG + chr3_4:60179182-60179201 Msa0510920:CDS 45.0%
ATGGAAAAGATAGGGTGGCA+AGG + chr3_4:60179235-60179254 Msa0510920:CDS 45.0%
AAAAGATAGGGTGGCAAGGT+TGG + chr3_4:60179239-60179258 Msa0510920:CDS 45.0%
TCGAGATGTACTTCGCAGAT+AGG - chr3_4:60179339-60179358 None:intergenic 45.0%
! TACTGGTACGCGTCTAAAAC+AGG + chr3_4:60179405-60179424 Msa0510920:intron 45.0%
TAGGGATAGTGTGGCTTACA+TGG + chr3_4:60179557-60179576 Msa0510920:intron 45.0%
AAACCCAAGTGCGAGATATG+TGG + chr3_4:60179693-60179712 Msa0510920:CDS 45.0%
AAGCCACATATCTCGCACTT+GGG - chr3_4:60179699-60179718 None:intergenic 45.0%
CTGCGGATCCAACAAAAGAT+TGG + chr3_4:60179737-60179756 Msa0510920:CDS 45.0%
GTGGGTAAATCTTTCGCTGT+AGG - chr3_4:60179847-60179866 None:intergenic 45.0%
AGAATCTTGCATGGTGGCTT+TGG + chr3_4:60180085-60180104 Msa0510920:CDS 45.0%
TCCAGAAGAAGCTACAGAAG+AGG + chr3_4:60180171-60180190 Msa0510920:CDS 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG + chr3_4:60180597-60180616 Msa0510920:intron 45.0%
!! ACATTTGAGTTGCCTCGTGT+TGG - chr3_4:60180868-60180887 None:intergenic 45.0%
AATGTCGCAATTAGGCGACT+AGG + chr3_4:60180883-60180902 Msa0510920:intron 45.0%
ATGTCGCAATTAGGCGACTA+GGG + chr3_4:60180884-60180903 Msa0510920:intron 45.0%
GGACTTGGCAGTTCAACAAA+AGG + chr3_4:60181136-60181155 Msa0510920:CDS 45.0%
TGGCAGTTCAACAAAAGGCT+TGG + chr3_4:60181141-60181160 Msa0510920:CDS 45.0%
CAGTTCAACAAAAGGCTTGG+TGG + chr3_4:60181144-60181163 Msa0510920:CDS 45.0%
! TACATTGGTCTGGTGGTTGA+AGG - chr3_4:60181267-60181286 None:intergenic 45.0%
!! AAAATAATTAAATTATAGAA+TGG - chr3_4:60181063-60181082 None:intergenic 5.0%
TGGCCTTCTAAGCGTCTCTT+TGG + chr3_4:60177360-60177379 Msa0510920:intron 50.0%
CTCACAAGTGCTTATGCCAG+TGG - chr3_4:60177410-60177429 None:intergenic 50.0%
GGTCTAAGGGTCGTTTGGAT+TGG + chr3_4:60177588-60177607 Msa0510920:intron 50.0%
CGGTCAAGGTTCCTATCTGT+TGG - chr3_4:60178021-60178040 None:intergenic 50.0%
ACAGATAGGAACCTTGACCG+AGG + chr3_4:60178021-60178040 Msa0510920:CDS 50.0%
TCCACGAACAGTCCAACTTG+TGG + chr3_4:60178241-60178260 Msa0510920:CDS 50.0%
! TCCACAAGTTGGACTGTTCG+TGG - chr3_4:60178245-60178264 None:intergenic 50.0%
GAAGGAGGATACCATTCCGA+CGG - chr3_4:60178280-60178299 None:intergenic 50.0%
! ATTTTCATCTGCTGGGCCTG+TGG - chr3_4:60178610-60178629 None:intergenic 50.0%
ACAGGCCCAGCAGATGAAAA+TGG + chr3_4:60178609-60178628 Msa0510920:CDS 50.0%
! TGAGTGGATTCCAGATCCAG+AGG + chr3_4:60178701-60178720 Msa0510920:CDS 50.0%
CCTTAGACTTGCGAGCAAAG+TGG - chr3_4:60178772-60178791 None:intergenic 50.0%
CCACTTTGCTCGCAAGTCTA+AGG + chr3_4:60178769-60178788 Msa0510920:intron 50.0%
AGTTGTGGACTTGTGGGACT+GGG + chr3_4:60179188-60179207 Msa0510920:CDS 50.0%
CTGCGAAGTACATCTCGATC+TGG + chr3_4:60179341-60179360 Msa0510920:CDS 50.0%
GATCTGGTACGCGTCAAAAC+AGG + chr3_4:60179357-60179376 Msa0510920:CDS 50.0%
GAAGCCACATATCTCGCACT+TGG - chr3_4:60179700-60179719 None:intergenic 50.0%
!! GAAAGCTGACTTGGCAACGT+GGG - chr3_4:60179865-60179884 None:intergenic 50.0%
!! AGAAAGCTGACTTGGCAACG+TGG - chr3_4:60179866-60179885 None:intergenic 50.0%
AAGGGTGATCATGGGAGAAG+GGG - chr3_4:60179950-60179969 None:intergenic 50.0%
GAAGGGTGATCATGGGAGAA+GGG - chr3_4:60179951-60179970 None:intergenic 50.0%
TGAAGGGTGATCATGGGAGA+AGG - chr3_4:60179952-60179971 None:intergenic 50.0%
!! TTGCATGGTGGCTTTGGTGT+TGG + chr3_4:60180091-60180110 Msa0510920:CDS 50.0%
ACACCAAGATTCTTCTGCCC+TGG - chr3_4:60180118-60180137 None:intergenic 50.0%
! GGGCAGAAGAATCTTGGTGT+CGG + chr3_4:60180118-60180137 Msa0510920:CDS 50.0%
GCTTCTTCTGGACAAGCATC+AGG - chr3_4:60180163-60180182 None:intergenic 50.0%
GCCTCTTCTGTAGCTTCTTC+TGG - chr3_4:60180175-60180194 None:intergenic 50.0%
! ATCTTCTAGAAGGCATGGGC+TGG + chr3_4:60180233-60180252 Msa0510920:CDS 50.0%
! GAGGTATGGACTGAGTTCTC+TGG + chr3_4:60180259-60180278 Msa0510920:intron 50.0%
TGCATCAGGTCATCATCACC+AGG + chr3_4:60180409-60180428 Msa0510920:intron 50.0%
GCATCAGGTCATCATCACCA+GGG + chr3_4:60180410-60180429 Msa0510920:intron 50.0%
AAGCTCACGAGGACTGTACA+TGG - chr3_4:60180584-60180603 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + chr3_4:60180596-60180615 Msa0510920:intron 50.0%
AGTGGGCAGAATTTGAACCC+CGG - chr3_4:60180646-60180665 None:intergenic 50.0%
TGGGACTAAAAGCCAACACG+AGG + chr3_4:60180853-60180872 Msa0510920:intron 50.0%
TGTCGCAATTAGGCGACTAG+GGG + chr3_4:60180885-60180904 Msa0510920:intron 50.0%
CTAGGGGCAGATCGCAATAA+AGG + chr3_4:60180901-60180920 Msa0510920:intron 50.0%
AAGTCCTTCTCCCTGCACAA+GGG - chr3_4:60181122-60181141 None:intergenic 50.0%
GTGGAACCTATTCAGCCAGT+TGG + chr3_4:60181163-60181182 Msa0510920:CDS 50.0%
GCACTGCCAATGTTTCCAAC+TGG - chr3_4:60181181-60181200 None:intergenic 50.0%
GTTGGAAACATTGGCAGTGC+AGG + chr3_4:60181181-60181200 Msa0510920:CDS 50.0%
AAACATTGGCAGTGCAGGCT+TGG + chr3_4:60181186-60181205 Msa0510920:CDS 50.0%
AACATTGGCAGTGCAGGCTT+GGG + chr3_4:60181187-60181206 Msa0510920:CDS 50.0%
! CACATGCTACATTGGTCTGG+TGG - chr3_4:60181274-60181293 None:intergenic 50.0%
CAGCCACTTGCGTTAGATCT+CGG + chr3_4:60181360-60181379 Msa0510920:three_prime_UTR 50.0%
CGCAACTTTACTTCCACGCC+AGG + chr3_4:60177004-60177023 Msa0510920:CDS 55.0%
AGGTGGAAAAGAACCTGGCG+TGG - chr3_4:60177020-60177039 None:intergenic 55.0%
GAACCTTGACCGAGGAAGCA+GGG + chr3_4:60178029-60178048 Msa0510920:CDS 55.0%
AACCTTGACCGAGGAAGCAG+GGG + chr3_4:60178030-60178049 Msa0510920:CDS 55.0%
CTTACCATCCCCTGCTTCCT+CGG - chr3_4:60178041-60178060 None:intergenic 55.0%
GGTGGAGGGTTTCCACAAGT+TGG - chr3_4:60178256-60178275 None:intergenic 55.0%
TGATACAGTGACAGACCCCG+TGG + chr3_4:60178430-60178449 Msa0510920:CDS 55.0%
AGCATTTAGCAGGGGACTCG+AGG - chr3_4:60178991-60179010 None:intergenic 55.0%
CAGTCCCACAAGTCCACAAC+TGG - chr3_4:60179189-60179208 None:intergenic 55.0%
CAGTTGTGGACTTGTGGGAC+TGG + chr3_4:60179187-60179206 Msa0510920:CDS 55.0%
GGACTTGTGGGACTGGGAAA+TGG + chr3_4:60179194-60179213 Msa0510920:CDS 55.0%
! GATAGGGTGGCAAGGTTGGT+TGG + chr3_4:60179243-60179262 Msa0510920:CDS 55.0%
! GGCAAGGTTGGTTGGAAGAC+TGG + chr3_4:60179251-60179270 Msa0510920:CDS 55.0%
!! GTGGCTTTGGTGTTGGTCCA+GGG + chr3_4:60180098-60180117 Msa0510920:CDS 55.0%
GGTCCAGGGCAGAAGAATCT+TGG + chr3_4:60180112-60180131 Msa0510920:CDS 55.0%
!! TCTAGAAGGCATGGGCTGGA+AGG + chr3_4:60180237-60180256 Msa0510920:CDS 55.0%
TCAGGTCATCATCACCAGGG+CGG + chr3_4:60180413-60180432 Msa0510920:intron 55.0%
TATTATCACACACCCCGCCC+TGG - chr3_4:60180430-60180449 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr3_4:60180595-60180614 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr3_4:60180592-60180611 Msa0510920:intron 55.0%
GGGGCAGATCGCAATAAAGG+CGG + chr3_4:60180904-60180923 Msa0510920:intron 55.0%
CAAGTCCTTCTCCCTGCACA+AGG - chr3_4:60181123-60181142 None:intergenic 55.0%
CTTGTGCAGGGAGAAGGACT+TGG + chr3_4:60181121-60181140 Msa0510920:intron 55.0%
ACATTGGCAGTGCAGGCTTG+GGG + chr3_4:60181188-60181207 Msa0510920:CDS 55.0%
!! GTCAGCCTTGTTCATCGACG+AGG - chr3_4:60181217-60181236 None:intergenic 55.0%
CGAGATCTAACGCAAGTGGC+TGG - chr3_4:60181362-60181381 None:intergenic 55.0%
CCACCGAGATCTAACGCAAG+TGG - chr3_4:60181366-60181385 None:intergenic 55.0%
CCACTTGCGTTAGATCTCGG+TGG + chr3_4:60181363-60181382 Msa0510920:three_prime_UTR 55.0%
GGAACCTTGACCGAGGAAGC+AGG + chr3_4:60178028-60178047 Msa0510920:CDS 60.0%
ATCCCCTGCTTCCTCGGTCA+AGG - chr3_4:60178035-60178054 None:intergenic 60.0%
TTGACCGAGGAAGCAGGGGA+TGG + chr3_4:60178034-60178053 Msa0510920:CDS 60.0%
GGAGGATACCATTCCGACGG+CGG - chr3_4:60178277-60178296 None:intergenic 60.0%
ACAGACCCCGTGGAAACCGA+TGG + chr3_4:60178440-60178459 Msa0510920:CDS 60.0%
ATGGGAGGTGACTGGACCAC+AGG + chr3_4:60178591-60178610 Msa0510920:CDS 60.0%
!! GGTGGCTTTGGTGTTGGTCC+AGG + chr3_4:60180097-60180116 Msa0510920:CDS 60.0%
!! AGAAGGCATGGGCTGGAAGG+AGG + chr3_4:60180240-60180259 Msa0510920:CDS 60.0%
!! GCATGGGCTGGAAGGAGGTA+TGG + chr3_4:60180245-60180264 Msa0510920:intron 60.0%
CAGGTCATCATCACCAGGGC+GGG + chr3_4:60180414-60180433 Msa0510920:intron 60.0%
AGGTCATCATCACCAGGGCG+GGG + chr3_4:60180415-60180434 Msa0510920:intron 60.0%
TTCTGTTCCCGCCCTTGTGC+AGG + chr3_4:60181108-60181127 Msa0510920:intron 60.0%
TCTGTTCCCGCCCTTGTGCA+GGG + chr3_4:60181109-60181128 Msa0510920:intron 60.0%
TCCTTCTCCCTGCACAAGGG+CGG - chr3_4:60181119-60181138 None:intergenic 60.0%
GGTGGCCTCGTCGATGAACA+AGG + chr3_4:60181209-60181228 Msa0510920:exon 60.0%
ACGCAAGTGGCTGGTGCGTA+GGG - chr3_4:60181353-60181372 None:intergenic 60.0%
AACGCAAGTGGCTGGTGCGT+AGG - chr3_4:60181354-60181373 None:intergenic 60.0%
TGGAAACCCTCCACCGCCGT+CGG + chr3_4:60178261-60178280 Msa0510920:CDS 65.0%
ACCATTCCGACGGCGGTGGA+GGG - chr3_4:60178270-60178289 None:intergenic 65.0%
TACCATTCCGACGGCGGTGG+AGG - chr3_4:60178271-60178290 None:intergenic 65.0%
GGATACCATTCCGACGGCGG+TGG - chr3_4:60178274-60178293 None:intergenic 65.0%
CCTTCTCCCTGCACAAGGGC+GGG - chr3_4:60181118-60181137 None:intergenic 65.0%
TTGGCAGTGCAGGCTTGGGG+TGG + chr3_4:60181191-60181210 Msa0510920:CDS 65.0%
ACCCTCCACCGCCGTCGGAA+TGG + chr3_4:60178266-60178285 Msa0510920:CDS 70.0%
CCCGCCCTTGTGCAGGGAGA+AGG + chr3_4:60181115-60181134 Msa0510920:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60176844 60181462 60176844 ID=Msa0510920;Name=Msa0510920
chr3_4 mRNA 60176844 60181462 60176844 ID=Msa0510920-mRNA-1;Parent=Msa0510920;Name=Msa0510920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=99|0.88|0.9|1|1|1|10|237|507
chr3_4 exon 60176844 60177025 60176844 ID=Msa0510920-mRNA-1:exon:14270;Parent=Msa0510920-mRNA-1
chr3_4 exon 60177247 60177352 60177247 ID=Msa0510920-mRNA-1:exon:14271;Parent=Msa0510920-mRNA-1
chr3_4 exon 60177896 60178055 60177896 ID=Msa0510920-mRNA-1:exon:14272;Parent=Msa0510920-mRNA-1
chr3_4 exon 60178230 60178287 60178230 ID=Msa0510920-mRNA-1:exon:14273;Parent=Msa0510920-mRNA-1
chr3_4 exon 60178367 60178488 60178367 ID=Msa0510920-mRNA-1:exon:14274;Parent=Msa0510920-mRNA-1
chr3_4 exon 60178574 60178762 60178574 ID=Msa0510920-mRNA-1:exon:14275;Parent=Msa0510920-mRNA-1
chr3_4 exon 60179106 60179378 60179106 ID=Msa0510920-mRNA-1:exon:14276;Parent=Msa0510920-mRNA-1
chr3_4 exon 60179674 60179894 60179674 ID=Msa0510920-mRNA-1:exon:14277;Parent=Msa0510920-mRNA-1
chr3_4 exon 60180046 60180261 60180046 ID=Msa0510920-mRNA-1:exon:14278;Parent=Msa0510920-mRNA-1
chr3_4 exon 60181130 60181462 60181130 ID=Msa0510920-mRNA-1:exon:14279;Parent=Msa0510920-mRNA-1
chr3_4 five_prime_UTR 60176844 60176942 60176844 ID=Msa0510920-mRNA-1:five_prime_utr;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60176943 60177025 60176943 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60177247 60177352 60177247 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60177896 60178055 60177896 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60178230 60178287 60178230 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60178367 60178488 60178367 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60178574 60178762 60178574 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60179106 60179378 60179106 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60179674 60179894 60179674 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60180046 60180261 60180046 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 CDS 60181130 60181225 60181130 ID=Msa0510920-mRNA-1:cds;Parent=Msa0510920-mRNA-1
chr3_4 three_prime_UTR 60181226 60181462 60181226 ID=Msa0510920-mRNA-1:three_prime_utr;Parent=Msa0510920-mRNA-1
Gene Sequence

>Msa0510920

ATGGACCCAGAACCTCAAATTTCGGAAAATAACGATTCTACCTTTGTTTGGGACGAAAACTCGCAACTTTACTTCCACGCCAGTAGTGGATTTTATCATGATCCTAATGCTGGCTGGTACTATAGCACCAGTGATGGTGTTTATTACAAATTTGAGGATGGAAATTATGTACCTTTAGATTGCAACAAGGATGATGATGTTGAAGAAATATATGTGTGCAAAGAAACCAAACCTGAAAGAACTCAACAAATACAAGACATTAACAATGAGGAGGATTGTTCTTCCTTCCTCGGAAACGAAATTGAAACTAACCAACAGATAGGAACCTTGACCGAGGAAGCAGGGGATGATGCAATGAACTCCACGAACAGTCCAACTTGTGGAAACCCTCCACCGCCGTCGGAATGGTTAGAAGACACACTTATTGATCTATACTTATCTGGCTACAACAACATAGCAGTTAGTGCAGCTGATACAGTGACAGACCCCGTGGAAACCGATGGATATAACTTCTCATTAGAAGCTGATGCTTACAGAAATACTGAAATGGGAGGTGACTGGACCACAGGCCCAGCAGATGAAAATGGCATGACTGATAATGAAAAAACTGTAGATGAAATTGTAGCTTACAGCGATGCTTATCAAGTAGAAGAAGGTGAGTGGATTCCAGATCCAGAGGATGAAAATCACTTAGCTGATGGAAGTTCCATAGATGAAGGCATCTTGTTCGAAGAAGAAAAATGGCGAGCTCAGTATGGTCAAGTCATTGAATCAAGGAAAGATCTGGTTTTAGAGTTTCCAGTTGTGGACTTGTGGGACTGGGAAATGGTCAGAGCATCCAAAAAAGATGGAAAAGATAGGGTGGCAAGGTTGGTTGGAAGACTGGTCAAACAATCTGCAAAGCGGCACCCATCTATCTCCTCTGTTGAAAAGAAATTTAGATCTGCTCCTATCTGCGAAGTACATCTCGATCTGGTACGCGTCAAAACAGGACAAGTGTATAGATTGCGAAACCCAAGTGCGAGATATGTGGCTTCATTATCAAGTTATGATTCTGCGGATCCAACAAAAGATTGGGATTTTCCTCAGTTATCATCTAATATAAATAGCAATCATGTCTTTAAGTCAAGTCAAAGTACTCCTTCCACTTCAACTGAAATTCCTACAGCGAAAGATTTACCCACGTTGCCAAGTCAGCTTTCTGTATCCAAGCAGATAAAATGTCAATATAGAGATCGCGCGGCTGAAAGAAGAATCTTGCATGGTGGCTTTGGTGTTGGTCCAGGGCAGAAGAATCTTGGTGTCGGTGATGATACAACATCATTGCCTGATGCTTGTCCAGAAGAAGCTACAGAAGAGGCGTTAAAGATGTCATTTGGACCAGGTAGTTATGCCAGAAATCTTCTAGAAGGCATGGGCTGGAAGGAGGGAGAAGGACTTGGCAGTTCAACAAAAGGCTTGGTGGAACCTATTCAGCCAGTTGGAAACATTGGCAGTGCAGGCTTGGGGTGGCCTCGTCGATGA

Protein sequence

>Msa0510920

MDPEPQISENNDSTFVWDENSQLYFHASSGFYHDPNAGWYYSTSDGVYYKFEDGNYVPLDCNKDDDVEEIYVCKETKPERTQQIQDINNEEDCSSFLGNEIETNQQIGTLTEEAGDDAMNSTNSPTCGNPPPPSEWLEDTLIDLYLSGYNNIAVSAADTVTDPVETDGYNFSLEADAYRNTEMGGDWTTGPADENGMTDNEKTVDEIVAYSDAYQVEEGEWIPDPEDENHLADGSSIDEGILFEEEKWRAQYGQVIESRKDLVLEFPVVDLWDWEMVRASKKDGKDRVARLVGRLVKQSAKRHPSISSVEKKFRSAPICEVHLDLVRVKTGQVYRLRNPSARYVASLSSYDSADPTKDWDFPQLSSNINSNHVFKSSQSTPSTSTEIPTAKDLPTLPSQLSVSKQIKCQYRDRAAERRILHGGFGVGPGQKNLGVGDDTTSLPDACPEEATEEALKMSFGPGSYARNLLEGMGWKEGEGLGSSTKGLVEPIQPVGNIGSAGLGWPRR*