AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493630 MtrunA17_Chr3g0138941 97.765 358 8 0 1 358 1 358 0.0 736
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493630 AT5G10710.1 62.342 316 109 4 45 358 1 308 2.23e-143 409
Msa0493630 AT5G10710.3 57.911 316 109 5 45 358 1 294 1.56e-126 365
Msa0493630 AT5G10710.2 68.398 231 69 3 45 273 1 229 3.45e-113 329

Find 85 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCATCATGTTGAAAAT+TGG 0.207042 3_4:-18961162 None:intergenic
AGACTTATAAAGGAACTTTA+TGG 0.261283 3_4:+18960739 Msa0493630:CDS
ACTTGGCTGACCGTATTTCT+AGG 0.263651 3_4:+18956747 Msa0493630:CDS
TATATAGTACCTAGCGAAAT+TGG 0.269534 3_4:+18961829 Msa0493630:three_prime_UTR
CCTAGCGAAATTGGTTATAT+AGG 0.340894 3_4:+18961838 Msa0493630:three_prime_UTR
GCTAGGTACTATATAACTTC+TGG 0.356582 3_4:-18961821 None:intergenic
TCTTGTACCATTTGTACAAC+AGG 0.378391 3_4:+18961943 Msa0493630:three_prime_UTR
CATGCAGGTCAGACTTATAA+AGG 0.380694 3_4:+18960729 Msa0493630:intron
AGACATAACTGAGTAAAGTT+TGG 0.383686 3_4:+18956201 Msa0493630:five_prime_UTR
GGAGCAGATAATTTGCTGTT+TGG 0.394698 3_4:+18959563 Msa0493630:intron
TTTGTAGAGATATATTTAGA+TGG 0.404679 3_4:+18957523 Msa0493630:intron
CAGAAATTCATTGATCATGT+TGG 0.434843 3_4:+18959979 Msa0493630:intron
TGTTTGGAAGGAGCAAGAAT+TGG 0.441864 3_4:+18959579 Msa0493630:CDS
TCGATACACAGATCTCATTT+CGG 0.451039 3_4:+18961083 Msa0493630:CDS
GAACTTTATGGAAATCAAAT+CGG 0.451964 3_4:+18960751 Msa0493630:CDS
TTGTAGAGATATATTTAGAT+GGG 0.452805 3_4:+18957524 Msa0493630:intron
ATGTATCCCTGTTGTACAAA+TGG 0.455077 3_4:-18961950 None:intergenic
TATTCCTTCAATATCCTCTC+TGG 0.456149 3_4:+18961915 Msa0493630:three_prime_UTR
GCTTAAAAGACATGAAAACT+TGG 0.457621 3_4:+18956730 Msa0493630:CDS
ATGATGGAAGATGGAATCTC+AGG 0.459261 3_4:+18961174 Msa0493630:CDS
GAAATTGGTTATATAGGTTG+AGG 0.462124 3_4:+18961844 Msa0493630:three_prime_UTR
GTGATCTTGTCAGGTGCATA+TGG 0.466433 3_4:+18957722 Msa0493630:intron
GTAGAATTTATCTTCGACAT+TGG 0.467570 3_4:-18961138 None:intergenic
CAGATAATTTGCTGTTTGGA+AGG 0.473656 3_4:+18959567 Msa0493630:intron
CTTGTTGCGAGAGGGATAAT+CGG 0.476270 3_4:-18956307 None:intergenic
TTCACCTTCTGGTAGACTCA+TGG 0.476510 3_4:-18961247 None:intergenic
CGCGATGCGATTCGTTGAAA+CGG 0.476706 3_4:+18956227 Msa0493630:exon
ATACGTGGATAGACGGGAAC+AGG 0.478284 3_4:+18960017 Msa0493630:CDS
CTCGAATCTCAGTGCTAGCC+TGG 0.481978 3_4:+18961115 Msa0493630:CDS
TCTTCTATGTCACTGAGTGT+TGG 0.486474 3_4:-18956173 None:intergenic
GAGAAAGTTACCTAGAAATA+CGG 0.501508 3_4:-18956757 None:intergenic
TAGGATAGTCGAACTGGTGC+AGG 0.504799 3_4:-18961204 None:intergenic
TGGACGGACGTATGCACCCA+TGG 0.509184 3_4:+18956461 Msa0493630:CDS
GGGATAATCGGCGGAGTGAA+AGG 0.509209 3_4:-18956295 None:intergenic
ACAAACTCGATCATGTGATA+AGG 0.514790 3_4:-18960793 None:intergenic
AGAATCTAAGACTGCAGAAA+GGG 0.517798 3_4:-18961747 None:intergenic
TCTGCGTAGGATAGTCGAAC+TGG 0.518507 3_4:-18961210 None:intergenic
GATGGGGAACAGTGGAATGA+TGG 0.520649 3_4:+18957541 Msa0493630:CDS
TGCAAGCATACGTGGATAGA+CGG 0.523288 3_4:+18960010 Msa0493630:CDS
TGACGTATTAACAAGCCATC+AGG 0.529984 3_4:+18957776 Msa0493630:CDS
ATTTATCTTCGACATTGGCC+AGG 0.530939 3_4:-18961133 None:intergenic
GGACGGACGTATGCACCCAT+GGG 0.534852 3_4:+18956462 Msa0493630:CDS
CCGCAGTTTGAACAATATGC+TGG 0.540600 3_4:+18956441 Msa0493630:intron
TGGTAGACTCATGGTTCGTA+AGG 0.549313 3_4:-18961238 None:intergenic
GCAAGATGATGATAGTCGCT+TGG 0.551967 3_4:+18956588 Msa0493630:CDS
AAAATGGAACTGTGTGCTCA+AGG 0.553374 3_4:-18959824 None:intergenic
GAGAATCTAAGACTGCAGAA+AGG 0.553556 3_4:-18961748 None:intergenic
TGCAGAAAGGGCGAAGCTCT+AGG 0.556381 3_4:-18961735 None:intergenic
ACTTGCTACAATAAGAGAGC+AGG 0.563333 3_4:+18957567 Msa0493630:CDS
GCAAGCATACGTGGATAGAC+GGG 0.564586 3_4:+18960011 Msa0493630:CDS
TCCTTCAATATCCTCTCTGG+TGG 0.566800 3_4:+18961918 Msa0493630:three_prime_UTR
TATATCTGCTGAAGTGCTTG+TGG 0.569777 3_4:-18961701 None:intergenic
GCTAGCACTGAGATTCGAGT+TGG 0.570019 3_4:-18961111 None:intergenic
TCGTAAGGCGTCTTCTGCGT+AGG 0.577738 3_4:-18961223 None:intergenic
AACGAGGGAGCAATATATGT+TGG 0.581685 3_4:-18961893 None:intergenic
TGTAGAGATATATTTAGATG+GGG 0.590530 3_4:+18957525 Msa0493630:intron
TCGTTAAGTTCATGTAGCTA+CGG 0.591340 3_4:+18956116 Msa0493630:five_prime_UTR
CCTATATAACCAATTTCGCT+AGG 0.591483 3_4:-18961838 None:intergenic
TATATTTAGATGGGGAACAG+TGG 0.594269 3_4:+18957533 Msa0493630:CDS
AGGATATTGAAGGAATAACG+AGG 0.594872 3_4:-18961909 None:intergenic
TCTTCTTTCATCCAATGCAA+TGG 0.597510 3_4:+18959875 Msa0493630:CDS
GAAGGGACCTTGTTGCGAGA+GGG 0.597833 3_4:-18956315 None:intergenic
ATTACAGGTATATAGAATTG+TGG 0.598252 3_4:-18962016 None:intergenic
ACCACCAGAGAGGATATTGA+AGG 0.599427 3_4:-18961919 None:intergenic
AGATCTATTGCAAGCATACG+TGG 0.604226 3_4:+18960002 Msa0493630:CDS
AAATGAGATCTGTGTATCGA+AGG 0.604667 3_4:-18961080 None:intergenic
AATTAACAGGGATTCTGACA+AGG 0.606528 3_4:+18956839 Msa0493630:intron
AGAAGGGACCTTGTTGCGAG+AGG 0.608665 3_4:-18956316 None:intergenic
CTTGTACCATTTGTACAACA+GGG 0.614869 3_4:+18961944 Msa0493630:three_prime_UTR
GGATATTGAAGGAATAACGA+GGG 0.617938 3_4:-18961908 None:intergenic
CGATTATCCCTCTCGCAACA+AGG 0.618165 3_4:+18956308 Msa0493630:CDS
TACATATAAAACTGGAAACA+AGG 0.626563 3_4:+18957806 Msa0493630:CDS
ACTCGATCATGTGATAAGGA+AGG 0.628301 3_4:-18960789 None:intergenic
CGTTGAAACGGAGAGCGATG+CGG 0.630811 3_4:+18956239 Msa0493630:CDS
CGGAGTGAAAGGAATTACTT+CGG 0.634074 3_4:-18956284 None:intergenic
GACGGACGTATGCACCCATG+GGG 0.641963 3_4:+18956463 Msa0493630:CDS
CAAGACTCGATGATTAACGA+TGG 0.662411 3_4:-18955973 None:intergenic
GCACGAGCTTCTCAAACACA+AGG 0.674546 3_4:+18956897 Msa0493630:CDS
ATCTTGTCAGGTGCATATGG+AGG 0.680322 3_4:+18957725 Msa0493630:intron
AGTTTGAACAATATGCTGGA+CGG 0.688660 3_4:+18956445 Msa0493630:intron
ACTTACTCTCCAGCACGCAG+TGG 0.705433 3_4:-18959779 None:intergenic
GTTGCGAGAGGGATAATCGG+CGG 0.711505 3_4:-18956304 None:intergenic
CGAACCATGAGTCTACCAGA+AGG 0.717534 3_4:+18961243 Msa0493630:CDS
GGTACAAGACACCACCAGAG+AGG 0.725071 3_4:-18961929 None:intergenic
ACGGACGTATGCACCCATGG+GGG 0.801481 3_4:+18956464 Msa0493630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATATTTGTATCAA+TGG - chr3_4:18956062-18956081 None:intergenic 10.0%
!! TAATAATTTGAAAAATAGAA+AGG - chr3_4:18956961-18956980 None:intergenic 10.0%
!!! AATAGTTTTGATTTTATTAT+AGG + chr3_4:18958358-18958377 Msa0493630:intron 10.0%
!! AATTAAAATGAAAAAGATAA+TGG - chr3_4:18958665-18958684 None:intergenic 10.0%
!! TTAAGGAAATAATAAAATAT+TGG + chr3_4:18959108-18959127 Msa0493630:intron 10.0%
!! TATATATATTTGTTTGTATC+AGG - chr3_4:18956671-18956690 None:intergenic 15.0%
!!! ATTTCTTCTTTTTAATTAAC+AGG + chr3_4:18956826-18956845 Msa0493630:intron 15.0%
!!! TTTCTTCTTTTTAATTAACA+GGG + chr3_4:18956827-18956846 Msa0493630:intron 15.0%
!! AATAAAATTGACATCAAATT+TGG + chr3_4:18957055-18957074 Msa0493630:intron 15.0%
!!! ATATCTTTTCATTTATTTCT+AGG + chr3_4:18959738-18959757 Msa0493630:intron 15.0%
!!! TGATTATGTTTCTTTTATTT+TGG + chr3_4:18960527-18960546 Msa0493630:intron 15.0%
!!! TCTATTATTTTAATCACAGT+TGG + chr3_4:18956701-18956720 Msa0493630:intron 20.0%
!! AACATATTAACAATTAGTGA+AGG - chr3_4:18956782-18956801 None:intergenic 20.0%
!! ATAAAAATAGTGCAACATTA+AGG - chr3_4:18957208-18957227 None:intergenic 20.0%
!! ATATCTCTACAAAAAAAAAG+AGG - chr3_4:18957516-18957535 None:intergenic 20.0%
!! TTTGTAGAGATATATTTAGA+TGG + chr3_4:18957523-18957542 Msa0493630:intron 20.0%
!! TTGTAGAGATATATTTAGAT+GGG + chr3_4:18957524-18957543 Msa0493630:intron 20.0%
!! GAAAAAGTTACATATAAAAC+TGG + chr3_4:18957798-18957817 Msa0493630:CDS 20.0%
!! TTATGTACCTATAAAAAACA+CGG + chr3_4:18957923-18957942 Msa0493630:intron 20.0%
!! TATCAAAAAGATATCAAGTT+GGG - chr3_4:18958446-18958465 None:intergenic 20.0%
!! TTATCAAAAAGATATCAAGT+TGG - chr3_4:18958447-18958466 None:intergenic 20.0%
!!! AACTTGATATCTTTTTGATA+AGG + chr3_4:18958446-18958465 Msa0493630:intron 20.0%
!! AATAATAAAATATTGGTGTG+TGG + chr3_4:18959115-18959134 Msa0493630:intron 20.0%
!! GTTTGAATTGAATACAAAAT+AGG + chr3_4:18959351-18959370 Msa0493630:intron 20.0%
!! TCTATTTCACTAAGTAAATA+TGG - chr3_4:18960243-18960262 None:intergenic 20.0%
!! GACAATTGTTTAGAAAAAAT+GGG - chr3_4:18960385-18960404 None:intergenic 20.0%
!! TGACAATTGTTTAGAAAAAA+TGG - chr3_4:18960386-18960405 None:intergenic 20.0%
!! TTGGTATGTAAAATATTAGA+TGG + chr3_4:18960493-18960512 Msa0493630:intron 20.0%
!! TAACATAGAATAGAATGTTT+AGG - chr3_4:18960589-18960608 None:intergenic 20.0%
!! AACATTCTATTCTATGTTAA+AGG + chr3_4:18960590-18960609 Msa0493630:intron 20.0%
!!! ATAATTAATATTGGCTATGA+GGG + chr3_4:18961440-18961459 Msa0493630:intron 20.0%
!!! ATAAAAAAAGAACTTGCTAA+AGG - chr3_4:18961536-18961555 None:intergenic 20.0%
! AGTGAAATTGATACGAATTA+GGG - chr3_4:18956370-18956389 None:intergenic 25.0%
! TAGTGAAATTGATACGAATT+AGG - chr3_4:18956371-18956390 None:intergenic 25.0%
! ATTTGTTTGTATCAGGAAAA+TGG - chr3_4:18956664-18956683 None:intergenic 25.0%
! AAAAATAGAAAGGATAAGAG+AGG - chr3_4:18956951-18956970 None:intergenic 25.0%
!!! ATGTTGCACTATTTTTATAC+CGG + chr3_4:18957210-18957229 Msa0493630:intron 25.0%
!!! TAACAGCAATATTTTTTGCA+TGG + chr3_4:18957307-18957326 Msa0493630:intron 25.0%
! GATTCTTAAGATGTAAATCT+TGG + chr3_4:18957393-18957412 Msa0493630:intron 25.0%
! TGTAGAGATATATTTAGATG+GGG + chr3_4:18957525-18957544 Msa0493630:intron 25.0%
! ATACCAGAACATAAGTAAAA+AGG - chr3_4:18957616-18957635 None:intergenic 25.0%
!!! TATATGTAACTTTTTCCTGA+TGG - chr3_4:18957794-18957813 None:intergenic 25.0%
! TACATATAAAACTGGAAACA+AGG + chr3_4:18957806-18957825 Msa0493630:CDS 25.0%
! TTACCATGAAAAGTTATTCA+GGG - chr3_4:18957854-18957873 None:intergenic 25.0%
! TTTACCATGAAAAGTTATTC+AGG - chr3_4:18957855-18957874 None:intergenic 25.0%
! TATGTACCTATAAAAAACAC+GGG + chr3_4:18957924-18957943 Msa0493630:intron 25.0%
!! TGGTTTTTGATAGAAAACTA+TGG - chr3_4:18958294-18958313 None:intergenic 25.0%
!!! CATCTTTTAAAATACAACAG+TGG + chr3_4:18958402-18958421 Msa0493630:intron 25.0%
!! AAATGAAAAAGATAATGGCT+CGG - chr3_4:18958660-18958679 None:intergenic 25.0%
!!! AGCAGTGTTTTTTTTTTCTT+CGG + chr3_4:18958997-18959016 Msa0493630:intron 25.0%
!!! GGAAACCAATGATTTTTTTT+GGG - chr3_4:18959457-18959476 None:intergenic 25.0%
! AGTTATATATGATGTTGTCA+TGG + chr3_4:18959905-18959924 Msa0493630:intron 25.0%
! GAAAAATGTTCAAATACACA+TGG - chr3_4:18959932-18959951 None:intergenic 25.0%
!! TGTTGAATATGTTCATTTTG+CGG + chr3_4:18960071-18960090 Msa0493630:intron 25.0%
! TCTGAGAATTTAAACTAACA+AGG - chr3_4:18960313-18960332 None:intergenic 25.0%
! AATTGTCAAAACATGTATTC+TGG + chr3_4:18960398-18960417 Msa0493630:intron 25.0%
! ATTGTCAAAACATGTATTCT+GGG + chr3_4:18960399-18960418 Msa0493630:intron 25.0%
! AGTTTAATATCTTCCACAAT+TGG - chr3_4:18960457-18960476 None:intergenic 25.0%
! ATTGTGGAAGATATTAAACT+TGG + chr3_4:18960457-18960476 Msa0493630:intron 25.0%
! TTCTATTCTATGTTAAAGGT+TGG + chr3_4:18960594-18960613 Msa0493630:intron 25.0%
! TCTATTCTATGTTAAAGGTT+GGG + chr3_4:18960595-18960614 Msa0493630:intron 25.0%
! AGACTTATAAAGGAACTTTA+TGG + chr3_4:18960739-18960758 Msa0493630:CDS 25.0%
! GAACTTTATGGAAATCAAAT+CGG + chr3_4:18960751-18960770 Msa0493630:CDS 25.0%
!!! TTGTATTAGATGATTTTGAC+TGG + chr3_4:18960812-18960831 Msa0493630:CDS 25.0%
! GGAAAGTGAAAGAAAATAAA+AGG - chr3_4:18960978-18960997 None:intergenic 25.0%
! ATTACAAGGTTTGAAAACAA+GGG - chr3_4:18961009-18961028 None:intergenic 25.0%
! TATTACAAGGTTTGAAAACA+AGG - chr3_4:18961010-18961029 None:intergenic 25.0%
! ACTTCTTGATCAATATTACA+AGG - chr3_4:18961023-18961042 None:intergenic 25.0%
! AGGTGAAAACTATATTACTT+CGG + chr3_4:18961263-18961282 Msa0493630:intron 25.0%
! ACTTAAATGAAATTAGACTC+TGG + chr3_4:18961372-18961391 Msa0493630:intron 25.0%
! AGTGTCCTCATAATTAATAT+TGG + chr3_4:18961431-18961450 Msa0493630:intron 25.0%
! CATAGCCAATATTAATTATG+AGG - chr3_4:18961439-18961458 None:intergenic 25.0%
!! CATAATTAATATTGGCTATG+AGG + chr3_4:18961439-18961458 Msa0493630:intron 25.0%
AGACATAACTGAGTAAAGTT+TGG + chr3_4:18956201-18956220 Msa0493630:five_prime_UTR 30.0%
CGTATCAATTTCACTACAAT+AGG + chr3_4:18956375-18956394 Msa0493630:intron 30.0%
GCTTAAAAGACATGAAAACT+TGG + chr3_4:18956730-18956749 Msa0493630:CDS 30.0%
GAGAAAGTTACCTAGAAATA+CGG - chr3_4:18956760-18956779 None:intergenic 30.0%
GATATAAATGAGTAGGTAAC+AGG - chr3_4:18956929-18956948 None:intergenic 30.0%
AAGAGAGGATATAAATGAGT+AGG - chr3_4:18956936-18956955 None:intergenic 30.0%
GAAACTGATATCACTTTGTA+TGG - chr3_4:18957028-18957047 None:intergenic 30.0%
ATTGACATCAAATTTGGACT+TGG + chr3_4:18957061-18957080 Msa0493630:intron 30.0%
!! AGTTGTTTTCTATGCTTTAC+AGG - chr3_4:18957102-18957121 None:intergenic 30.0%
!! TCTAAAACATTTTAACAGCG+TGG + chr3_4:18957371-18957390 Msa0493630:intron 30.0%
AATGAATGAACAGTAGAAGT+TGG - chr3_4:18957461-18957480 None:intergenic 30.0%
!!! CATTTTTCAGGATATCTCTA+AGG - chr3_4:18957485-18957504 None:intergenic 30.0%
! CTTCCTTTTTACTTATGTTC+TGG + chr3_4:18957610-18957629 Msa0493630:intron 30.0%
GATTACTATGAAGAACATCA+AGG - chr3_4:18957643-18957662 None:intergenic 30.0%
GCTTGCATATTTAAGTCATT+TGG + chr3_4:18957883-18957902 Msa0493630:intron 30.0%
!!! ATCTTACCCGTGTTTTTTAT+AGG - chr3_4:18957933-18957952 None:intergenic 30.0%
ATTGAGAATGTGAAAAGAGT+AGG + chr3_4:18958058-18958077 Msa0493630:intron 30.0%
TCGCTCTACTATAAAGTTTA+GGG - chr3_4:18958106-18958125 None:intergenic 30.0%
TTCGCTCTACTATAAAGTTT+AGG - chr3_4:18958107-18958126 None:intergenic 30.0%
!!! ACAAGGTAAAGTTTTGAGTA+TGG + chr3_4:18958178-18958197 Msa0493630:intron 30.0%
!!! CAAGGTAAAGTTTTGAGTAT+GGG + chr3_4:18958179-18958198 Msa0493630:intron 30.0%
!!! AAGGTAAAGTTTTGAGTATG+GGG + chr3_4:18958180-18958199 Msa0493630:intron 30.0%
! TTTTCTATCAAAAACCAACG+AGG + chr3_4:18958297-18958316 Msa0493630:intron 30.0%
! GTCTAAAATATTTGTACCCT+CGG - chr3_4:18958332-18958351 None:intergenic 30.0%
GAGAGTTGAGAATACATAAA+TGG + chr3_4:18958749-18958768 Msa0493630:intron 30.0%
CATAAATGGTAAGTGAGATA+TGG + chr3_4:18958763-18958782 Msa0493630:intron 30.0%
ACATACAAATTCCACTAAGT+AGG + chr3_4:18958801-18958820 Msa0493630:intron 30.0%
ACATACAAATCATAGCTTGA+AGG + chr3_4:18958871-18958890 Msa0493630:intron 30.0%
TACTTACAATATGAGACTTG+AGG - chr3_4:18958917-18958936 None:intergenic 30.0%
CTTGGATCGTCAAATTTATT+TGG - chr3_4:18959083-18959102 None:intergenic 30.0%
ATTATTTCCTTAACACTGCT+TGG - chr3_4:18959101-18959120 None:intergenic 30.0%
TAGATTTAATAGGCATCCTA+TGG + chr3_4:18959182-18959201 Msa0493630:intron 30.0%
! TGATTTTTACCTCTAGCTAT+TGG - chr3_4:18959283-18959302 None:intergenic 30.0%
!! GAATACAAAATAGGTACTGA+TGG + chr3_4:18959360-18959379 Msa0493630:intron 30.0%
!!! ACCAATGATTTTTTTTGGGA+GGG - chr3_4:18959453-18959472 None:intergenic 30.0%
!!! AACCAATGATTTTTTTTGGG+AGG - chr3_4:18959454-18959473 None:intergenic 30.0%
!!! CGGAAACCAATGATTTTTTT+TGG - chr3_4:18959458-18959477 None:intergenic 30.0%
TAGTTTATGAGCTGACATTA+TGG + chr3_4:18959664-18959683 Msa0493630:intron 30.0%
AGATATAATCGTCAGCAAAT+GGG - chr3_4:18959724-18959743 None:intergenic 30.0%
AAGATATAATCGTCAGCAAA+TGG - chr3_4:18959725-18959744 None:intergenic 30.0%
! TCATTTTCTGTTTCACGTAT+TGG - chr3_4:18959855-18959874 None:intergenic 30.0%
!! AACTGATTTTACCATTGCAT+TGG - chr3_4:18959889-18959908 None:intergenic 30.0%
CAGAAATTCATTGATCATGT+TGG + chr3_4:18959979-18959998 Msa0493630:intron 30.0%
! TCTCTAAAGATTACATGCAT+AGG - chr3_4:18960050-18960069 None:intergenic 30.0%
! TTTTGCGGAATACTGATATT+AGG + chr3_4:18960086-18960105 Msa0493630:intron 30.0%
CATGTTAAAGCTAGTATCTT+TGG + chr3_4:18960201-18960220 Msa0493630:intron 30.0%
AACACTATCTACTGATAAGT+CGG + chr3_4:18960332-18960351 Msa0493630:intron 30.0%
!! AGAATGTTTAGGCTTTGTTT+GGG - chr3_4:18960578-18960597 None:intergenic 30.0%
!! TAGAATGTTTAGGCTTTGTT+TGG - chr3_4:18960579-18960598 None:intergenic 30.0%
CTATTCTATGTTAAAGGTTG+GGG + chr3_4:18960596-18960615 Msa0493630:intron 30.0%
TACAAGCATACATGAAAAGA+GGG - chr3_4:18960645-18960664 None:intergenic 30.0%
TTACAAGCATACATGAAAAG+AGG - chr3_4:18960646-18960665 None:intergenic 30.0%
TTGAAAACAAGGGAAAATGT+AGG - chr3_4:18960999-18961018 None:intergenic 30.0%
GTAGAATTTATCTTCGACAT+TGG - chr3_4:18961141-18961160 None:intergenic 30.0%
! TACTCCAATTTTCAACATGA+TGG + chr3_4:18961158-18961177 Msa0493630:CDS 30.0%
TCTTCCATCATGTTGAAAAT+TGG - chr3_4:18961165-18961184 None:intergenic 30.0%
!! ATTTTCAACATGATGGAAGA+TGG + chr3_4:18961165-18961184 Msa0493630:CDS 30.0%
! GTAATATAGTTTTCACCTTC+TGG - chr3_4:18961261-18961280 None:intergenic 30.0%
!!! AGAGAACGATGTCTTATTTT+CGG + chr3_4:18961296-18961315 Msa0493630:intron 30.0%
AAGTCTGATATGTGTCTTTA+TGG + chr3_4:18961595-18961614 Msa0493630:intron 30.0%
TATATAGTACCTAGCGAAAT+TGG + chr3_4:18961829-18961848 Msa0493630:three_prime_UTR 30.0%
GAAATTGGTTATATAGGTTG+AGG + chr3_4:18961844-18961863 Msa0493630:three_prime_UTR 30.0%
TCGTTAAGTTCATGTAGCTA+CGG + chr3_4:18956116-18956135 Msa0493630:five_prime_UTR 35.0%
ATGATCAGAGAAGAGAAGAA+GGG - chr3_4:18956335-18956354 None:intergenic 35.0%
AGTTTGAACAATATGCTGGA+CGG + chr3_4:18956445-18956464 Msa0493630:intron 35.0%
AATTAACAGGGATTCTGACA+AGG + chr3_4:18956839-18956858 Msa0493630:intron 35.0%
TATACCGGCAATAATTGAAC+TGG + chr3_4:18957225-18957244 Msa0493630:intron 35.0%
!!! GAGGTTTAGAAGCATTTTTC+AGG - chr3_4:18957497-18957516 None:intergenic 35.0%
TATATTTAGATGGGGAACAG+TGG + chr3_4:18957533-18957552 Msa0493630:CDS 35.0%
TGACAAGATCACAGTTGAAT+GGG - chr3_4:18957714-18957733 None:intergenic 35.0%
! CATCCCTGAATAACTTTTCA+TGG + chr3_4:18957848-18957867 Msa0493630:intron 35.0%
ACGCTAAAGAACTAAACACA+TGG + chr3_4:18957956-18957975 Msa0493630:intron 35.0%
ATGTGAAAAGAGTAGGAGAT+AGG + chr3_4:18958065-18958084 Msa0493630:intron 35.0%
AAGAGTAGGAGATAGGATAT+TGG + chr3_4:18958072-18958091 Msa0493630:intron 35.0%
AGAGTAGGAGATAGGATATT+GGG + chr3_4:18958073-18958092 Msa0493630:intron 35.0%
CGCTCTACTATAAAGTTTAG+GGG - chr3_4:18958105-18958124 None:intergenic 35.0%
TGTGATGTTACCAATGCATA+TGG + chr3_4:18958132-18958151 Msa0493630:intron 35.0%
!!! AGGTAAAGTTTTGAGTATGG+GGG + chr3_4:18958181-18958200 Msa0493630:intron 35.0%
TAGGTAACACTAAAAACGAG+AGG + chr3_4:18958377-18958396 Msa0493630:intron 35.0%
!! AAGATATCAAGTTGGGACTT+GGG - chr3_4:18958439-18958458 None:intergenic 35.0%
!! AAAGATATCAAGTTGGGACT+TGG - chr3_4:18958440-18958459 None:intergenic 35.0%
AATAGTCAAGTCAGAAATCC+TGG + chr3_4:18958577-18958596 Msa0493630:intron 35.0%
ATAGTCAAGTCAGAAATCCT+GGG + chr3_4:18958578-18958597 Msa0493630:intron 35.0%
AAATCCTGGGATAAGATGAT+GGG + chr3_4:18958591-18958610 Msa0493630:intron 35.0%
TTTGTGCACACTAGAGTTAT+GGG - chr3_4:18958628-18958647 None:intergenic 35.0%
! TTTTGTGCACACTAGAGTTA+TGG - chr3_4:18958629-18958648 None:intergenic 35.0%
ATAACTCTAGTGTGCACAAA+AGG + chr3_4:18958628-18958647 Msa0493630:intron 35.0%
TACCTAAATAACATGCACCA+AGG - chr3_4:18958729-18958748 None:intergenic 35.0%
CATAGCTTGAAGGTTGAAAT+TGG + chr3_4:18958881-18958900 Msa0493630:intron 35.0%
!! CTTGTTGTCACTTTGTATGA+TGG - chr3_4:18958948-18958967 None:intergenic 35.0%
ACAAAGTGACAACAAGATAG+AGG + chr3_4:18958952-18958971 Msa0493630:intron 35.0%
CAAAGTGACAACAAGATAGA+GGG + chr3_4:18958953-18958972 Msa0493630:intron 35.0%
TAGAGGGAGATGTAAATTAC+AGG + chr3_4:18958969-18958988 Msa0493630:intron 35.0%
! TGTTGATTGGTATAACCACT+CGG + chr3_4:18959057-18959076 Msa0493630:intron 35.0%
GGACACATGGTAGATTTAAT+AGG + chr3_4:18959172-18959191 Msa0493630:intron 35.0%
!! GTTAACAAAATGGTGGATAC+TGG + chr3_4:18959252-18959271 Msa0493630:intron 35.0%
! CTAAATCTCACTTGATGGTT+TGG - chr3_4:18959320-18959339 None:intergenic 35.0%
AACCATCAAGTGAGATTTAG+AGG + chr3_4:18959320-18959339 Msa0493630:intron 35.0%
TACCTCTAAATCTCACTTGA+TGG - chr3_4:18959325-18959344 None:intergenic 35.0%
TGAACCCACTTAATGGAATA+AGG + chr3_4:18959403-18959422 Msa0493630:intron 35.0%
!! CAAGCCTTATTCCATTAAGT+GGG - chr3_4:18959410-18959429 None:intergenic 35.0%
!!! CCAATGATTTTTTTTGGGAG+GGG - chr3_4:18959452-18959471 None:intergenic 35.0%
! AGTATAGCATTGAACGTGTA+CGG - chr3_4:18959478-18959497 None:intergenic 35.0%
TACACGTTCAATGCTATACT+TGG + chr3_4:18959478-18959497 Msa0493630:intron 35.0%
!! CAGATAATTTGCTGTTTGGA+AGG + chr3_4:18959567-18959586 Msa0493630:intron 35.0%
! GACATCTTTTGCTGGTAATT+TGG + chr3_4:18959614-18959633 Msa0493630:intron 35.0%
TTTATGAGCTGACATTATGG+AGG + chr3_4:18959667-18959686 Msa0493630:intron 35.0%
! TCACGTATTGGCAAGAAAAA+TGG - chr3_4:18959843-18959862 None:intergenic 35.0%
TCTTCTTTCATCCAATGCAA+TGG + chr3_4:18959875-18959894 Msa0493630:CDS 35.0%
TTTCTAAGCCTTGCTTCTAT+TGG + chr3_4:18959948-18959967 Msa0493630:intron 35.0%
AATGCAAACCAATAGAAGCA+AGG - chr3_4:18959959-18959978 None:intergenic 35.0%
TTAGGTCATCATGATCCTTA+TGG + chr3_4:18960104-18960123 Msa0493630:intron 35.0%
ATGCAACATACATGTCCATA+AGG - chr3_4:18960122-18960141 None:intergenic 35.0%
ATGGACATGTATGTTGCATA+CGG + chr3_4:18960123-18960142 Msa0493630:intron 35.0%
CACTAAGTAAATATGGCTAC+AGG - chr3_4:18960236-18960255 None:intergenic 35.0%
ACTAACAAGGATATGAGTTG+TGG - chr3_4:18960300-18960319 None:intergenic 35.0%
! CCACAATTGGTGTTCTTAAA+TGG - chr3_4:18960444-18960463 None:intergenic 35.0%
CCATTTAAGAACACCAATTG+TGG + chr3_4:18960441-18960460 Msa0493630:intron 35.0%
!! ACTTGGTGTCTTAGTTATCT+TGG + chr3_4:18960474-18960493 Msa0493630:intron 35.0%
ACAAACTCGATCATGTGATA+AGG - chr3_4:18960796-18960815 None:intergenic 35.0%
!!! AGATGATTTTGACTGGTTAG+TGG + chr3_4:18960819-18960838 Msa0493630:intron 35.0%
!!! GATGATTTTGACTGGTTAGT+GGG + chr3_4:18960820-18960839 Msa0493630:intron 35.0%
AGGGGGAAGAAAATTTGAAA+AGG - chr3_4:18960888-18960907 None:intergenic 35.0%
TCCCGTGTTAACATTTGAAA+GGG - chr3_4:18960907-18960926 None:intergenic 35.0%
TTCCCGTGTTAACATTTGAA+AGG - chr3_4:18960908-18960927 None:intergenic 35.0%
ATGTTAACACGGGAAATCAT+TGG + chr3_4:18960913-18960932 Msa0493630:intron 35.0%
AAATGAGATCTGTGTATCGA+AGG - chr3_4:18961083-18961102 None:intergenic 35.0%
TCGATACACAGATCTCATTT+CGG + chr3_4:18961083-18961102 Msa0493630:CDS 35.0%
! AGCATTTGCTGAAAAGTGAA+AGG - chr3_4:18961407-18961426 None:intergenic 35.0%
TATCAGACTTAAGTGTGCAT+GGG - chr3_4:18961585-18961604 None:intergenic 35.0%
ATATCAGACTTAAGTGTGCA+TGG - chr3_4:18961586-18961605 None:intergenic 35.0%
! AGAGCGAGATAACTTTGAAA+TGG - chr3_4:18961623-18961642 None:intergenic 35.0%
! AGAATCTAAGACTGCAGAAA+GGG - chr3_4:18961750-18961769 None:intergenic 35.0%
GCTAGGTACTATATAACTTC+TGG - chr3_4:18961824-18961843 None:intergenic 35.0%
CCTATATAACCAATTTCGCT+AGG - chr3_4:18961841-18961860 None:intergenic 35.0%
CCTAGCGAAATTGGTTATAT+AGG + chr3_4:18961838-18961857 Msa0493630:three_prime_UTR 35.0%
GGATATTGAAGGAATAACGA+GGG - chr3_4:18961911-18961930 None:intergenic 35.0%
AGGATATTGAAGGAATAACG+AGG - chr3_4:18961912-18961931 None:intergenic 35.0%
TATTCCTTCAATATCCTCTC+TGG + chr3_4:18961915-18961934 Msa0493630:three_prime_UTR 35.0%
TCTTGTACCATTTGTACAAC+AGG + chr3_4:18961943-18961962 Msa0493630:three_prime_UTR 35.0%
CTTGTACCATTTGTACAACA+GGG + chr3_4:18961944-18961963 Msa0493630:three_prime_UTR 35.0%
ATGTATCCCTGTTGTACAAA+TGG - chr3_4:18961953-18961972 None:intergenic 35.0%
CAAGACTCGATGATTAACGA+TGG - chr3_4:18955976-18955995 None:intergenic 40.0%
TCTTCTATGTCACTGAGTGT+TGG - chr3_4:18956176-18956195 None:intergenic 40.0%
CGGAGTGAAAGGAATTACTT+CGG - chr3_4:18956287-18956306 None:intergenic 40.0%
GATGATCAGAGAAGAGAAGA+AGG - chr3_4:18956336-18956355 None:intergenic 40.0%
CCAGCATATTGTTCAAACTG+CGG - chr3_4:18956444-18956463 None:intergenic 40.0%
! CTTCAGTGCCTTGTGTTATT+TGG + chr3_4:18957135-18957154 Msa0493630:intron 40.0%
AGGCTACACCAAATAACACA+AGG - chr3_4:18957146-18957165 None:intergenic 40.0%
!! TTGTGTTATTTGGTGTAGCC+TGG + chr3_4:18957145-18957164 Msa0493630:intron 40.0%
AACCAATAGATGACTAAGCC+AGG - chr3_4:18957166-18957185 None:intergenic 40.0%
! ACTTGCTACAATAAGAGAGC+AGG + chr3_4:18957567-18957586 Msa0493630:CDS 40.0%
CTACAATAAGAGAGCAGGTA+TGG + chr3_4:18957572-18957591 Msa0493630:intron 40.0%
CTGACAAGATCACAGTTGAA+TGG - chr3_4:18957715-18957734 None:intergenic 40.0%
CATTCAACTGTGATCTTGTC+AGG + chr3_4:18957713-18957732 Msa0493630:intron 40.0%
TGACGTATTAACAAGCCATC+AGG + chr3_4:18957776-18957795 Msa0493630:CDS 40.0%
ACCAATGCATATGGACAAGT+AGG + chr3_4:18958141-18958160 Msa0493630:intron 40.0%
CCAATGCATATGGACAAGTA+GGG + chr3_4:18958142-18958161 Msa0493630:intron 40.0%
AGGGAATGAAGAGCAATACA+AGG + chr3_4:18958161-18958180 Msa0493630:intron 40.0%
!!! GGTAAAGTTTTGAGTATGGG+GGG + chr3_4:18958182-18958201 Msa0493630:intron 40.0%
AACGAGGATATAAACACCGA+GGG + chr3_4:18958313-18958332 Msa0493630:intron 40.0%
GAAATCCTGGGATAAGATGA+TGG + chr3_4:18958590-18958609 Msa0493630:intron 40.0%
AAAACCCATCATCTTATCCC+AGG - chr3_4:18958598-18958617 None:intergenic 40.0%
TTGTGCACACTAGAGTTATG+GGG - chr3_4:18958627-18958646 None:intergenic 40.0%
! TGCCTTGGTGCATGTTATTT+AGG + chr3_4:18958724-18958743 Msa0493630:intron 40.0%
TCTCTTACAGTCCTACTTAG+TGG - chr3_4:18958815-18958834 None:intergenic 40.0%
GGACTGTAAGAGACAACAAT+TGG + chr3_4:18958822-18958841 Msa0493630:intron 40.0%
GTCAAATTTATTTGGCCGAG+TGG - chr3_4:18959075-18959094 None:intergenic 40.0%
CTATGGTAGCAGACATTGAT+GGG + chr3_4:18959199-18959218 Msa0493630:intron 40.0%
! ACCATTTTGTTAACCCTCCT+TGG - chr3_4:18959246-18959265 None:intergenic 40.0%
AAGGAGGGTTAACAAAATGG+TGG + chr3_4:18959245-18959264 Msa0493630:intron 40.0%
!! ACAAAATGGTGGATACTGGA+TGG + chr3_4:18959256-18959275 Msa0493630:intron 40.0%
ATATCGCTGAACCCACTTAA+TGG + chr3_4:18959396-18959415 Msa0493630:intron 40.0%
!! CCAAGCCTTATTCCATTAAG+TGG - chr3_4:18959411-18959430 None:intergenic 40.0%
CCACTTAATGGAATAAGGCT+TGG + chr3_4:18959408-18959427 Msa0493630:intron 40.0%
CCCCTCCCAAAAAAAATCAT+TGG + chr3_4:18959449-18959468 Msa0493630:intron 40.0%
!! GGAGCAGATAATTTGCTGTT+TGG + chr3_4:18959563-18959582 Msa0493630:intron 40.0%
TGTTTGGAAGGAGCAAGAAT+TGG + chr3_4:18959579-18959598 Msa0493630:CDS 40.0%
! CAGTATGAGACATCTTTTGC+TGG + chr3_4:18959606-18959625 Msa0493630:CDS 40.0%
AATCGTCAGCAAATGGGAAA+CGG - chr3_4:18959718-18959737 None:intergenic 40.0%
AAAATGGAACTGTGTGCTCA+AGG - chr3_4:18959827-18959846 None:intergenic 40.0%
AGATCTATTGCAAGCATACG+TGG + chr3_4:18960002-18960021 Msa0493630:CDS 40.0%
!! TTAGGCTTTGTTTGGGAGTT+AGG - chr3_4:18960571-18960590 None:intergenic 40.0%
CATGCAGGTCAGACTTATAA+AGG + chr3_4:18960729-18960748 Msa0493630:intron 40.0%
ACTCGATCATGTGATAAGGA+AGG - chr3_4:18960792-18960811 None:intergenic 40.0%
CCGTGTTAACATTTGAAAGG+GGG - chr3_4:18960905-18960924 None:intergenic 40.0%
CCCCCTTTCAAATGTTAACA+CGG + chr3_4:18960902-18960921 Msa0493630:intron 40.0%
CCCGTGTTAACATTTGAAAG+GGG - chr3_4:18960906-18960925 None:intergenic 40.0%
CCCCTTTCAAATGTTAACAC+GGG + chr3_4:18960903-18960922 Msa0493630:intron 40.0%
ATTTATCTTCGACATTGGCC+AGG - chr3_4:18961136-18961155 None:intergenic 40.0%
! ATGATGGAAGATGGAATCTC+AGG + chr3_4:18961174-18961193 Msa0493630:CDS 40.0%
ACACAATCTCTGCATATGCT+GGG - chr3_4:18961673-18961692 None:intergenic 40.0%
AACACAATCTCTGCATATGC+TGG - chr3_4:18961674-18961693 None:intergenic 40.0%
! TATATCTGCTGAAGTGCTTG+TGG - chr3_4:18961704-18961723 None:intergenic 40.0%
! GAGAATCTAAGACTGCAGAA+AGG - chr3_4:18961751-18961770 None:intergenic 40.0%
AACGAGGGAGCAATATATGT+TGG - chr3_4:18961896-18961915 None:intergenic 40.0%
CTTGTTGCGAGAGGGATAAT+CGG - chr3_4:18956310-18956329 None:intergenic 45.0%
CCGCAGTTTGAACAATATGC+TGG + chr3_4:18956441-18956460 Msa0493630:intron 45.0%
GCAAGATGATGATAGTCGCT+TGG + chr3_4:18956588-18956607 Msa0493630:CDS 45.0%
ACTTGGCTGACCGTATTTCT+AGG + chr3_4:18956747-18956766 Msa0493630:CDS 45.0%
AGCCTGGCTTAGTCATCTAT+TGG + chr3_4:18957161-18957180 Msa0493630:intron 45.0%
GGGTCCAGTTCAATTATTGC+CGG - chr3_4:18957232-18957251 None:intergenic 45.0%
GTGATCTTGTCAGGTGCATA+TGG + chr3_4:18957722-18957741 Msa0493630:intron 45.0%
ATCTTGTCAGGTGCATATGG+AGG + chr3_4:18957725-18957744 Msa0493630:intron 45.0%
CCCTACTTGTCCATATGCAT+TGG - chr3_4:18958145-18958164 None:intergenic 45.0%
! GGCTTGGTTGTTGTTGTTGT+TGG - chr3_4:18958230-18958249 None:intergenic 45.0%
!! CTCGGTGTTTATATCCTCGT+TGG - chr3_4:18958314-18958333 None:intergenic 45.0%
CAACGAGGATATAAACACCG+AGG + chr3_4:18958312-18958331 Msa0493630:intron 45.0%
TCCATAACCAGTACGTTGCT+GGG - chr3_4:18958529-18958548 None:intergenic 45.0%
GAATTGATGAGACACTGCCT+TGG + chr3_4:18958709-18958728 Msa0493630:intron 45.0%
GAATCGAACAACCATCAGCT+TGG + chr3_4:18959034-18959053 Msa0493630:intron 45.0%
!! ACCATCAGCTTGGTGTTGAT+TGG + chr3_4:18959044-18959063 Msa0493630:intron 45.0%
ACCAATCAACACCAAGCTGA+TGG - chr3_4:18959048-18959067 None:intergenic 45.0%
TGACGATCCAAGCAGTGTTA+AGG + chr3_4:18959091-18959110 Msa0493630:intron 45.0%
CCATCAATGTCTGCTACCAT+AGG - chr3_4:18959201-18959220 None:intergenic 45.0%
CCTATGGTAGCAGACATTGA+TGG + chr3_4:18959198-18959217 Msa0493630:intron 45.0%
GCCAAGGAGGGTTAACAAAA+TGG + chr3_4:18959242-18959261 Msa0493630:intron 45.0%
! ATGGAATAAGGCTTGGTTGC+AGG + chr3_4:18959415-18959434 Msa0493630:intron 45.0%
! TGGAATAAGGCTTGGTTGCA+GGG + chr3_4:18959416-18959435 Msa0493630:intron 45.0%
AGGCTGGATCTTTCTCTAGA+TGG + chr3_4:18959687-18959706 Msa0493630:intron 45.0%
TGCAAGCATACGTGGATAGA+CGG + chr3_4:18960010-18960029 Msa0493630:CDS 45.0%
TCTATGTTAAAGGTTGGGGC+AGG + chr3_4:18960600-18960619 Msa0493630:intron 45.0%
ACCTGCATGACATTTGTAGG+AGG - chr3_4:18960718-18960737 None:intergenic 45.0%
CTGACCTGCATGACATTTGT+AGG - chr3_4:18960721-18960740 None:intergenic 45.0%
TGGTAGACTCATGGTTCGTA+AGG - chr3_4:18961241-18961260 None:intergenic 45.0%
TTCACCTTCTGGTAGACTCA+TGG - chr3_4:18961250-18961269 None:intergenic 45.0%
ATGTGATCGTGTGTGCAACT+AGG + chr3_4:18961336-18961355 Msa0493630:intron 45.0%
TCCTTCAATATCCTCTCTGG+TGG + chr3_4:18961918-18961937 Msa0493630:three_prime_UTR 45.0%
ACCACCAGAGAGGATATTGA+AGG - chr3_4:18961922-18961941 None:intergenic 45.0%
!!! AATATCTTTTATTTTATTTT+GGG - chr3_4:18957252-18957271 None:intergenic 5.0%
!!! AAATATCTTTTATTTTATTT+TGG - chr3_4:18957253-18957272 None:intergenic 5.0%
!!! TTTAATATTTTTTATGTATT+TGG + chr3_4:18959541-18959560 Msa0493630:intron 5.0%
!!! TTAATATTTTTTATGTATTT+GGG + chr3_4:18959542-18959561 Msa0493630:intron 5.0%
CGCGATGCGATTCGTTGAAA+CGG + chr3_4:18956227-18956246 Msa0493630:exon 50.0%
CGATTATCCCTCTCGCAACA+AGG + chr3_4:18956308-18956327 Msa0493630:CDS 50.0%
AGCATTACCACTTCCCCCAT+GGG - chr3_4:18956480-18956499 None:intergenic 50.0%
AAGCATTACCACTTCCCCCA+TGG - chr3_4:18956481-18956500 None:intergenic 50.0%
GCACGAGCTTCTCAAACACA+AGG + chr3_4:18956897-18956916 Msa0493630:CDS 50.0%
GATGGGGAACAGTGGAATGA+TGG + chr3_4:18957541-18957560 Msa0493630:CDS 50.0%
!!! AGTTTTGAGTATGGGGGGTG+TGG + chr3_4:18958187-18958206 Msa0493630:intron 50.0%
! CAAGCCTTATCCCGCTAAGT+GGG + chr3_4:18958244-18958263 Msa0493630:intron 50.0%
! AAGCCTTATCCCGCTAAGTG+GGG + chr3_4:18958245-18958264 Msa0493630:intron 50.0%
!! ACCCAGCAACGTACTGGTTA+TGG + chr3_4:18958525-18958544 Msa0493630:intron 50.0%
GTCCATAACCAGTACGTTGC+TGG - chr3_4:18958530-18958549 None:intergenic 50.0%
GTGTGGAGCAGACATTGATG+TGG + chr3_4:18959132-18959151 Msa0493630:intron 50.0%
!! AGACATTGATGTGGTGCTGC+AGG + chr3_4:18959141-18959160 Msa0493630:intron 50.0%
ATCTACCATGTGTCCACCCT+AGG - chr3_4:18959167-18959186 None:intergenic 50.0%
CTTGGCAATAATTGCCGCCA+AGG - chr3_4:18959228-18959247 None:intergenic 50.0%
CTTGGCGGCAATTATTGCCA+AGG + chr3_4:18959226-18959245 Msa0493630:intron 50.0%
GCGGCAATTATTGCCAAGGA+GGG + chr3_4:18959230-18959249 Msa0493630:intron 50.0%
CTGGATGGTCCAATAGCTAG+AGG + chr3_4:18959271-18959290 Msa0493630:intron 50.0%
TGAGCTGACATTATGGAGGC+TGG + chr3_4:18959671-18959690 Msa0493630:intron 50.0%
GTCAGCAAATGGGAAACGGA+AGG - chr3_4:18959714-18959733 None:intergenic 50.0%
! TGAGTTTTACCACTGCGTGC+TGG + chr3_4:18959770-18959789 Msa0493630:CDS 50.0%
GCAAGCATACGTGGATAGAC+GGG + chr3_4:18960011-18960030 Msa0493630:CDS 50.0%
ATACGTGGATAGACGGGAAC+AGG + chr3_4:18960017-18960036 Msa0493630:CDS 50.0%
! GGAGTTAGGAGCGTAAGTGA+AGG - chr3_4:18960557-18960576 None:intergenic 50.0%
TTAAAGGTTGGGGCAGGCAT+AGG + chr3_4:18960606-18960625 Msa0493630:intron 50.0%
GCCTCCTACAAATGTCATGC+AGG + chr3_4:18960714-18960733 Msa0493630:intron 50.0%
! GCTAGCACTGAGATTCGAGT+TGG - chr3_4:18961114-18961133 None:intergenic 50.0%
TAGGATAGTCGAACTGGTGC+AGG - chr3_4:18961207-18961226 None:intergenic 50.0%
TCTGCGTAGGATAGTCGAAC+TGG - chr3_4:18961213-18961232 None:intergenic 50.0%
CGAACCATGAGTCTACCAGA+AGG + chr3_4:18961243-18961262 Msa0493630:CDS 50.0%
TGGGAGCAGGCTTGTAGAAT+AGG - chr3_4:18961566-18961585 None:intergenic 50.0%
ACTTAAGTGTGCATGGGAGC+AGG - chr3_4:18961579-18961598 None:intergenic 50.0%
CGTTGAAACGGAGAGCGATG+CGG + chr3_4:18956239-18956258 Msa0493630:CDS 55.0%
GGGATAATCGGCGGAGTGAA+AGG - chr3_4:18956298-18956317 None:intergenic 55.0%
GTTGCGAGAGGGATAATCGG+CGG - chr3_4:18956307-18956326 None:intergenic 55.0%
GAAGGGACCTTGTTGCGAGA+GGG - chr3_4:18956318-18956337 None:intergenic 55.0%
AGAAGGGACCTTGTTGCGAG+AGG - chr3_4:18956319-18956338 None:intergenic 55.0%
CCACTTAGCGGGATAAGGCT+TGG - chr3_4:18958246-18958265 None:intergenic 55.0%
! CCAAGCCTTATCCCGCTAAG+TGG + chr3_4:18958243-18958262 Msa0493630:intron 55.0%
CTTATCCCGCTAAGTGGGGT+CGG + chr3_4:18958249-18958268 Msa0493630:intron 55.0%
ATGTAGCCGACCCCACTTAG+CGG - chr3_4:18958258-18958277 None:intergenic 55.0%
CTGGGTAGCTAGACTCTCTC+TGG - chr3_4:18958511-18958530 None:intergenic 55.0%
CTAGCTACCCAGCAACGTAC+TGG + chr3_4:18958519-18958538 Msa0493630:intron 55.0%
! CAGACATTGATGGGCCTCCT+TGG + chr3_4:18959208-18959227 Msa0493630:intron 55.0%
! ACATTGATGGGCCTCCTTGG+CGG + chr3_4:18959211-18959230 Msa0493630:intron 55.0%
GGCAATAATTGCCGCCAAGG+AGG - chr3_4:18959225-18959244 None:intergenic 55.0%
GGCGGCAATTATTGCCAAGG+AGG + chr3_4:18959229-18959248 Msa0493630:intron 55.0%
ACTTACTCTCCAGCACGCAG+TGG - chr3_4:18959782-18959801 None:intergenic 55.0%
CTCGAATCTCAGTGCTAGCC+TGG + chr3_4:18961115-18961134 Msa0493630:CDS 55.0%
! TCGTAAGGCGTCTTCTGCGT+AGG - chr3_4:18961226-18961245 None:intergenic 55.0%
TGCAGAAAGGGCGAAGCTCT+AGG - chr3_4:18961738-18961757 None:intergenic 55.0%
GGTACAAGACACCACCAGAG+AGG - chr3_4:18961932-18961951 None:intergenic 55.0%
TGGACGGACGTATGCACCCA+TGG + chr3_4:18956461-18956480 Msa0493630:CDS 60.0%
GGACGGACGTATGCACCCAT+GGG + chr3_4:18956462-18956481 Msa0493630:CDS 60.0%
GACGGACGTATGCACCCATG+GGG + chr3_4:18956463-18956482 Msa0493630:CDS 60.0%
ACGGACGTATGCACCCATGG+GGG + chr3_4:18956464-18956483 Msa0493630:CDS 60.0%
GTATGCACCCATGGGGGAAG+TGG + chr3_4:18956470-18956489 Msa0493630:CDS 60.0%
CGACCCCACTTAGCGGGATA+AGG - chr3_4:18958251-18958270 None:intergenic 60.0%
TGTAGCCGACCCCACTTAGC+GGG - chr3_4:18958257-18958276 None:intergenic 60.0%
GCTAAGTGGGGTCGGCTACA+TGG + chr3_4:18958257-18958276 Msa0493630:intron 60.0%
!! TGATGTGGTGCTGCAGGCCT+AGG + chr3_4:18959147-18959166 Msa0493630:intron 60.0%
!! GATGTGGTGCTGCAGGCCTA+GGG + chr3_4:18959148-18959167 Msa0493630:intron 60.0%
! GTATGGGGGGTGTGGCAACG+AGG + chr3_4:18958195-18958214 Msa0493630:intron 65.0%
GCAGGCCTAGGGTGGACACA+TGG + chr3_4:18959159-18959178 Msa0493630:intron 65.0%
!! GTGGTGCTGCAGGCCTAGGG+TGG + chr3_4:18959151-18959170 Msa0493630:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 18955951 18962034 18955951 ID=Msa0493630;Name=Msa0493630
chr3_4 mRNA 18955951 18962034 18955951 ID=Msa0493630-mRNA-1;Parent=Msa0493630;Name=Msa0493630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=226|1|1|1|0.92|0.85|14|304|358
chr3_4 exon 18955951 18956046 18955951 ID=Msa0493630-mRNA-1:exon:5169;Parent=Msa0493630-mRNA-1
chr3_4 exon 18956101 18956329 18956101 ID=Msa0493630-mRNA-1:exon:5170;Parent=Msa0493630-mRNA-1
chr3_4 exon 18956447 18956491 18956447 ID=Msa0493630-mRNA-1:exon:5171;Parent=Msa0493630-mRNA-1
chr3_4 exon 18956574 18956628 18956574 ID=Msa0493630-mRNA-1:exon:5172;Parent=Msa0493630-mRNA-1
chr3_4 exon 18956720 18956768 18956720 ID=Msa0493630-mRNA-1:exon:5173;Parent=Msa0493630-mRNA-1
chr3_4 exon 18956848 18956918 18956848 ID=Msa0493630-mRNA-1:exon:5174;Parent=Msa0493630-mRNA-1
chr3_4 exon 18957530 18957588 18957530 ID=Msa0493630-mRNA-1:exon:5175;Parent=Msa0493630-mRNA-1
chr3_4 exon 18957735 18957827 18957735 ID=Msa0493630-mRNA-1:exon:5176;Parent=Msa0493630-mRNA-1
chr3_4 exon 18959570 18959627 18959570 ID=Msa0493630-mRNA-1:exon:5177;Parent=Msa0493630-mRNA-1
chr3_4 exon 18959760 18959896 18959760 ID=Msa0493630-mRNA-1:exon:5178;Parent=Msa0493630-mRNA-1
chr3_4 exon 18959982 18960038 18959982 ID=Msa0493630-mRNA-1:exon:5179;Parent=Msa0493630-mRNA-1
chr3_4 exon 18960736 18960833 18960736 ID=Msa0493630-mRNA-1:exon:5180;Parent=Msa0493630-mRNA-1
chr3_4 exon 18961065 18961264 18961065 ID=Msa0493630-mRNA-1:exon:5181;Parent=Msa0493630-mRNA-1
chr3_4 exon 18961675 18962034 18961675 ID=Msa0493630-mRNA-1:exon:5182;Parent=Msa0493630-mRNA-1
chr3_4 five_prime_UTR 18955951 18956046 18955951 ID=Msa0493630-mRNA-1:five_prime_utr;Parent=Msa0493630-mRNA-1
chr3_4 five_prime_UTR 18956101 18956230 18956101 ID=Msa0493630-mRNA-1:five_prime_utr;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18956231 18956329 18956231 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18956447 18956491 18956447 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18956574 18956628 18956574 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18956720 18956768 18956720 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18956848 18956918 18956848 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18957530 18957588 18957530 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18957735 18957827 18957735 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18959570 18959627 18959570 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18959760 18959896 18959760 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18959982 18960038 18959982 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18960736 18960833 18960736 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18961065 18961264 18961065 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 CDS 18961675 18961730 18961675 ID=Msa0493630-mRNA-1:cds;Parent=Msa0493630-mRNA-1
chr3_4 three_prime_UTR 18961731 18962034 18961731 ID=Msa0493630-mRNA-1:three_prime_utr;Parent=Msa0493630-mRNA-1
Gene Sequence

>Msa0493630

ATGCGATTCGTTGAAACGGAGAGCGATGCGGAAGAATCTATGCGAAAGAGACTCCGAAGTAATTCCTTTCACTCCGCCGATTATCCCTCTCGCAACAAGTTTGAACAATATGCTGGACGGACGTATGCACCCATGGGGGAAGTGAATTTTATGCAGCAGCAAGATGATGATAGTCGCTTGGATATTACACGAGCTAAATTTGGAAGTTTGCTTAAAAGACATGAAAACTTGGCTGACCGTATTTCTAGGGATTCTGACAAGGTAATATTTGAGCGTCTACTCAAAGAGTTTGAATCTGCACGAGCTTCTCAAACACAAGAGATATATTTAGATGGGGAACAGTGGAATGATGGTCTACTTGCTACAATAAGAGAGCAGGTGCATATGGAGGCAGAGAGAAAAGCATTGTCTAAAGATGCTGACGTATTAACAAGCCATCAGGAAAAAGTTACATATAAAACTGGAAACAAGATAATTTGCTGTTTGGAAGGAGCAAGAATTGGCATACAGTATGAGACATCTTTTGCTGGTGAAATTTGTGAGTTTTACCACTGCGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAGCACACAGTTCCATTTTTCTTGCCAATACGTGAAACAGAAAATGATCTTCTTTCATCCAATGCAATGAAATTCATTGATCATGTTGGAGATCTATTGCAAGCATACGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAACTTTATGGAAATCAAATCGGAGAGCTGTATCATAGCCTTCCTTATCACATGATCGAGTTTGTATTAGATGATTTTGACTGCAAAGTGACAGTCAGCCTTCGATACACAGATCTCATTTCGGTGCTTCCAACTCGAATCTCAGTGCTAGCCTGGCCAATGTCGAAGATAAATTCTACTCCAATTTTCAACATGATGGAAGATGGAATCTCAGGAAGTCATCCTGCACCAGTTCGACTATCCTACGCAGAAGACGCCTTACGAACCATGAGTCTACCAGAAGCATATGCAGAGATTGTGTTGAATCTTCCACAAGCACTTCAGCAGATATATCATTAA

Protein sequence

>Msa0493630

MRFVETESDAEESMRKRLRSNSFHSADYPSRNKFEQYAGRTYAPMGEVNFMQQQDDDSRLDITRAKFGSLLKRHENLADRISRDSDKVIFERLLKEFESARASQTQEIYLDGEQWNDGLLATIREQVHMEAERKALSKDADVLTSHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCVLESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQVRLIKELYGNQIGELYHSLPYHMIEFVLDDFDCKVTVSLRYTDLISVLPTRISVLAWPMSKINSTPIFNMMEDGISGSHPAPVRLSYAEDALRTMSLPEAYAEIVLNLPQALQQIYH*