AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437260 MtrunA17_Chr3g0117161 92.462 398 21 1 102 499 1 389 0.0 728
Msa1437260 MtrunA17_Chr3g0117151 81.034 116 5 1 1 99 1 116 1.59e-58 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437260 AT4G34140.3 38.462 572 228 15 2 499 5 526 1.18e-98 307
Msa1437260 AT4G34140.1 38.569 573 227 15 2 499 5 527 2.69e-98 306
Msa1437260 AT4G34140.2 38.394 573 228 15 2 499 5 527 9.83e-98 305
Msa1437260 AT4G34140.5 43.869 367 129 9 195 499 9 360 2.23e-81 257
Msa1437260 AT4G34140.4 43.869 367 129 9 195 499 36 387 1.44e-80 256
Msa1437260 AT4G34140.9 43.750 368 127 9 195 499 36 386 4.62e-80 255
Msa1437260 AT4G34140.8 43.478 368 130 9 195 499 9 361 1.33e-79 253
Msa1437260 AT4G34140.7 43.478 368 130 9 195 499 36 388 8.68e-79 251
Msa1437260 AT4G34140.6 43.976 332 118 7 227 499 25 347 8.22e-74 237
Msa1437260 AT4G34140.10 40.678 354 154 7 12 349 14 327 4.71e-69 228

Find 152 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTGTTGAGTTCTTTC+AGG 0.164384 tig0028229:-35391 None:intergenic
AACTGGATTACCGTGTATTT+AGG 0.190469 tig0028229:-38965 None:intergenic
CATGCCTTCTAGAAGATTTC+TGG 0.200653 tig0028229:-37680 None:intergenic
CTACAAAATCTCTTAAACTA+TGG 0.262255 tig0028229:+34378 Msa1437260:exon
GCCTCTTCTGTAGCTTCTTC+TGG 0.265752 tig0028229:-37625 None:intergenic
CTTATTGATCTATACTTATC+TGG 0.274374 tig0028229:+35833 Msa1437260:CDS
GGTGGCTTTGGTGTTGGTCC+AGG 0.281454 tig0028229:+37550 Msa1437260:CDS
ATAACGATTCTACCTTTGTT+TGG 0.286937 tig0028229:+34425 Msa1437260:CDS
TTCTGTTCCCGCCCTTGTGC+AGG 0.315698 tig0028229:+38652 Msa1437260:CDS
ATGTTTCCAACTGGCTGAAT+AGG 0.318885 tig0028229:-38713 None:intergenic
ACTGGATTACCGTGTATTTA+GGG 0.319680 tig0028229:-38964 None:intergenic
ATCGCATTTGATTGTGCTAT+TGG 0.331143 tig0028229:+38990 Msa1437260:three_prime_UTR
AGTGGAAATACCTTCATCTA+TGG 0.335384 tig0028229:-36204 None:intergenic
ACAATCAAATGCGATTTAAC+TGG 0.343342 tig0028229:-38982 None:intergenic
TAACGATTCTACCTTTGTTT+GGG 0.351558 tig0028229:+34426 Msa1437260:CDS
AACATTGGCAGTGCAGGCTT+GGG 0.359973 tig0028229:+38731 Msa1437260:CDS
TTGATTGTGCTATTGGTGTT+CGG 0.363400 tig0028229:+38997 Msa1437260:three_prime_UTR
ACAGGCCCAGCAGATGAAAA+TGG 0.380870 tig0028229:+36062 Msa1437260:CDS
TGATTGTGCTATTGGTGTTC+GGG 0.383279 tig0028229:+38998 Msa1437260:three_prime_UTR
CTATAGTACCAGCCAGCATT+AGG 0.390043 tig0028229:-34719 None:intergenic
TTTCCGAAATTTGAGGTTCT+GGG 0.393041 tig0028229:-34402 None:intergenic
CAGTTGTGGACTTGTGGGAC+TGG 0.396053 tig0028229:+36640 Msa1437260:CDS
GAGGCGTTAAAGATGTCATT+TGG 0.400128 tig0028229:+37643 Msa1437260:CDS
TTGTTGAGTTCTTTCAGGTT+TGG 0.403639 tig0028229:-35386 None:intergenic
AAACATTGGCAGTGCAGGCT+TGG 0.407324 tig0028229:+38730 Msa1437260:CDS
GGACCCAGAACCTCAAATTT+CGG 0.413387 tig0028229:+34399 Msa1437260:CDS
CTGCCGATCCAACAAAAGAT+TGG 0.415464 tig0028229:+37190 Msa1437260:CDS
GGCAAGGTTGGTTGGAAGAC+TGG 0.422436 tig0028229:+36704 Msa1437260:CDS
GTTTCCAGTTGTGGACTTGT+GGG 0.427219 tig0028229:+36635 Msa1437260:CDS
AGCTTACAGAAATACTGAAA+TGG 0.427789 tig0028229:+36025 Msa1437260:intron
CAGTCCCACAAGTCCACAAC+TGG 0.428086 tig0028229:-36639 None:intergenic
CCCGCCCTTGTGCAGGGAGA+AGG 0.431469 tig0028229:+38659 Msa1437260:CDS
AGAATCTTGCATGGTGGCTT+TGG 0.433461 tig0028229:+37538 Msa1437260:CDS
AAAAGATAGGGTGGCAAGGT+TGG 0.437322 tig0028229:+36692 Msa1437260:CDS
TGCCGATCCAACAAAAGATT+GGG 0.443261 tig0028229:+37191 Msa1437260:CDS
TACCATTCCGACGGCGGTGG+AGG 0.443987 tig0028229:-35721 None:intergenic
GCTTCTTCTGGACAAGCATC+AGG 0.444285 tig0028229:-37613 None:intergenic
AGTTTCCAGTTGTGGACTTG+TGG 0.448878 tig0028229:+36634 Msa1437260:CDS
GTTGGAAACATTGGCAGTGC+AGG 0.451094 tig0028229:+38725 Msa1437260:CDS
CTTACCATCCCCTGCTTCCT+CGG 0.451447 tig0028229:-35491 None:intergenic
GCTTACAGAAATACTGAAAT+GGG 0.451792 tig0028229:+36026 Msa1437260:intron
GAGGATTGTTCTTCCTTCCT+CGG 0.454567 tig0028229:+35430 Msa1437260:CDS
TATGCCAGAAATCTTCTAGA+AGG 0.454930 tig0028229:+37676 Msa1437260:CDS
CATTGAATCAAGGAAAGATC+TGG 0.457483 tig0028229:+36605 Msa1437260:CDS
GGACTTGTGGGACTGGGAAA+TGG 0.461025 tig0028229:+36647 Msa1437260:CDS
AATCTGGTACGCGTCAAAAC+AGG 0.461723 tig0028229:+36810 Msa1437260:CDS
TTGAGATGTACTTCGCAGAT+AGG 0.463041 tig0028229:-36789 None:intergenic
GCACTGCCAATGTTTCCAAC+TGG 0.470042 tig0028229:-38722 None:intergenic
TTGCATGGTGGCTTTGGTGT+TGG 0.471657 tig0028229:+37544 Msa1437260:CDS
CGGTCAAGGTTCCTATCTGT+TGG 0.472224 tig0028229:-35471 None:intergenic
GTGGCTTTGGTGTTGGTCCA+GGG 0.472256 tig0028229:+37551 Msa1437260:CDS
TTCAATTTCGTTTCCGAGGA+AGG 0.473128 tig0028229:-35443 None:intergenic
GATAGGGTGGCAAGGTTGGT+TGG 0.473323 tig0028229:+36696 Msa1437260:CDS
ATCTTCTAGAAGGCATGGGC+TGG 0.474580 tig0028229:+37686 Msa1437260:CDS
CGCAACTTTACTTTCACGCC+AGG 0.476804 tig0028229:+34458 Msa1437260:CDS
GGAACCTTGACCGAGGAAGC+AGG 0.477060 tig0028229:+35481 Msa1437260:CDS
ATTGAAACTAACCAACAGAT+AGG 0.478031 tig0028229:+35460 Msa1437260:CDS
ACGCAAGTGGCTGGTGCGTA+GGG 0.481820 tig0028229:-38894 None:intergenic
TCCACAAGTTGGACTGTTCG+TGG 0.482684 tig0028229:-35695 None:intergenic
GGTCCAGGGCAGAAGAATCT+TGG 0.483376 tig0028229:+37565 Msa1437260:CDS
CAAGTCCTTCTCCCTGCACA+AGG 0.485026 tig0028229:-38664 None:intergenic
CCTTCTCCCTGCACAAGGGC+GGG 0.486959 tig0028229:-38659 None:intergenic
CTTGTGCAGGGAGAAGGACT+TGG 0.487602 tig0028229:+38665 Msa1437260:CDS
CTGCGAAGTACATCTCAATC+TGG 0.490416 tig0028229:+36794 Msa1437260:CDS
ACACCAAGATTCTTCTGCCC+TGG 0.490581 tig0028229:-37568 None:intergenic
GATGTTCTGATATGTTGTTT+CGG 0.493749 tig0028229:+34314 Msa1437260:five_prime_UTR
TTGGCAGTGCAGGCTTGGGG+TGG 0.496258 tig0028229:+38735 Msa1437260:CDS
CAGTTCAACAAAAGGCTTGG+TGG 0.498063 tig0028229:+38688 Msa1437260:CDS
AAACACATGCTACATTGGTC+TGG 0.500130 tig0028229:-38818 None:intergenic
GGACTTGGCAGTTCAACAAA+AGG 0.504360 tig0028229:+38680 Msa1437260:CDS
AGTTGTGGACTTGTGGGACT+GGG 0.509025 tig0028229:+36641 Msa1437260:CDS
AAGTCAGCTTTCTGTATCCA+AGG 0.510213 tig0028229:+37326 Msa1437260:CDS
CAGCCACTTGCGTTAGATCT+CGG 0.510703 tig0028229:+38904 Msa1437260:three_prime_UTR
TTTGTAATAAACACCATCAC+TGG 0.513294 tig0028229:-34744 None:intergenic
ATCCCCTGCTTCCTCGGTCA+AGG 0.516110 tig0028229:-35485 None:intergenic
ACCCTCCACCGCCGTCGGAA+TGG 0.516570 tig0028229:+35719 Msa1437260:CDS
ATCATGATCCTAATGCTGGC+TGG 0.520822 tig0028229:+34711 Msa1437260:CDS
TTATATCCATCGGTTTCCAC+GGG 0.522689 tig0028229:-35899 None:intergenic
GTTATATCCATCGGTTTCCA+CGG 0.523283 tig0028229:-35900 None:intergenic
TCTGTTCCCGCCCTTGTGCA+GGG 0.524418 tig0028229:+38653 Msa1437260:CDS
AACTTCTCATTAGAAGCTGA+TGG 0.525343 tig0028229:+35920 Msa1437260:CDS
CAGAAATCTTCTAGAAGGCA+TGG 0.525345 tig0028229:+37681 Msa1437260:CDS
TGGCAGTTCAACAAAAGGCT+TGG 0.525531 tig0028229:+38685 Msa1437260:CDS
GGATACCATTCCGACGGCGG+TGG 0.526658 tig0028229:-35724 None:intergenic
GGAATTTCAGTTGAAGTGGA+AGG 0.529631 tig0028229:-37276 None:intergenic
GTGGAACCTATTCAGCCAGT+TGG 0.535283 tig0028229:+38707 Msa1437260:CDS
ATGGGAGGTGACTGGACCAC+AGG 0.535287 tig0028229:+36044 Msa1437260:CDS
AACGCAAGTGGCTGGTGCGT+AGG 0.535703 tig0028229:-38895 None:intergenic
TACATTGGTCTGGTGGTTGA+AGG 0.536103 tig0028229:-38808 None:intergenic
TCCTTCTCCCTGCACAAGGG+CGG 0.537892 tig0028229:-38660 None:intergenic
ATGGTCAAGTCATTGAATCA+AGG 0.539010 tig0028229:+36595 Msa1437260:CDS
TAATGAGAAGTTATATCCAT+CGG 0.540938 tig0028229:-35909 None:intergenic
GAAGCCACATATCTCGCACT+TGG 0.541343 tig0028229:-37150 None:intergenic
GATGAAAATCACTTAGCTGA+TGG 0.548544 tig0028229:+36176 Msa1437260:CDS
CGAGATCTAACGCAAGTGGC+TGG 0.549793 tig0028229:-38903 None:intergenic
ATTCAGCCAGTTGGAAACAT+TGG 0.550272 tig0028229:+38716 Msa1437260:CDS
TCTAGAAGGCATGGGCTGGA+AGG 0.551981 tig0028229:+37690 Msa1437260:CDS
ATACTGAAATGGGAGGTGAC+TGG 0.558400 tig0028229:+36036 Msa1437260:CDS
TTTCAACAGAGGAGATAGAT+GGG 0.558751 tig0028229:-36749 None:intergenic
ACCATTCCGACGGCGGTGGA+GGG 0.559175 tig0028229:-35720 None:intergenic
AGATTTCTGGCATAACTACC+TGG 0.559707 tig0028229:-37667 None:intergenic
TTGGATACAGAAAGCTGACT+TGG 0.564129 tig0028229:-37324 None:intergenic
GAACCTTGACCGAGGAAGCA+GGG 0.564978 tig0028229:+35482 Msa1437260:CDS
AAACCCAAGTGCGAGATATG+TGG 0.566437 tig0028229:+37146 Msa1437260:CDS
GATGGAAGTTCCATAGATGA+AGG 0.567701 tig0028229:+36194 Msa1437260:CDS
GGTGGCCTCGTCGATGAACA+AGG 0.574701 tig0028229:+38753 Msa1437260:exon
GGTGGAGGGTTTCCACAAGT+TGG 0.574803 tig0028229:-35706 None:intergenic
TCCACGAACAGTCCAACTTG+TGG 0.576946 tig0028229:+35694 Msa1437260:CDS
GTGGGTAAATCTTTCGCTGT+AGG 0.578293 tig0028229:-37297 None:intergenic
TGGAAACCCTCCACCGCCGT+CGG 0.581504 tig0028229:+35714 Msa1437260:CDS
GATGCTTATCAAGTAGAAGA+AGG 0.583550 tig0028229:+36131 Msa1437260:CDS
TCCAGAAGAAGCTACAGAAG+AGG 0.585922 tig0028229:+37624 Msa1437260:CDS
ACATTGGCAGTGCAGGCTTG+GGG 0.591205 tig0028229:+38732 Msa1437260:CDS
TGTAGGAATTTCAGTTGAAG+TGG 0.593062 tig0028229:-37280 None:intergenic
AGAAATCTTCTAGAAGGCAT+GGG 0.593920 tig0028229:+37682 Msa1437260:CDS
CTGGATTACCGTGTATTTAG+GGG 0.594159 tig0028229:-38963 None:intergenic
AGAAGGCATGGGCTGGAAGG+AGG 0.595542 tig0028229:+37693 Msa1437260:CDS
AAGCCACATATCTCGCACTT+GGG 0.596356 tig0028229:-37149 None:intergenic
TAGTTTCAATTTCGTTTCCG+AGG 0.598650 tig0028229:-35447 None:intergenic
ATGGAAAAGATAGGGTGGCA+AGG 0.600283 tig0028229:+36688 Msa1437260:CDS
ACAGACCCCGTGGAAACCGA+TGG 0.614452 tig0028229:+35893 Msa1437260:CDS
AACCTTGACCGAGGAAGCAG+GGG 0.617715 tig0028229:+35483 Msa1437260:CDS
CCACCGAGATCTAACGCAAG+TGG 0.618868 tig0028229:-38907 None:intergenic
TTAAAGATGTCATTTGGACC+AGG 0.619131 tig0028229:+37649 Msa1437260:CDS
TGTGATGTACAACAATACAT+AGG 0.619990 tig0028229:-38938 None:intergenic
GGGCAGAAGAATCTTGGTGT+CGG 0.634541 tig0028229:+37571 Msa1437260:CDS
GAAAGCTGACTTGGCAACGT+GGG 0.634656 tig0028229:-37315 None:intergenic
TTGACCGAGGAAGCAGGGGA+TGG 0.636386 tig0028229:+35487 Msa1437260:CDS
ATCAAGTAGAAGAAGGTGAG+TGG 0.644722 tig0028229:+36138 Msa1437260:CDS
AAGTCCTTCTCCCTGCACAA+GGG 0.644870 tig0028229:-38663 None:intergenic
AATACAAGACATTAACAATG+AGG 0.647640 tig0028229:+35408 Msa1437260:CDS
AAAAGATGGAAAAGATAGGG+TGG 0.647950 tig0028229:+36683 Msa1437260:CDS
GCTGAAAGAAGAATCTTGCA+TGG 0.649213 tig0028229:+37529 Msa1437260:CDS
TGGTACTATAGCACCAGTGA+TGG 0.651452 tig0028229:+34731 Msa1437260:CDS
TGTGAGTGTTGCAAATTCAA+AGG 0.656462 tig0028229:-38869 None:intergenic
ATCACACTCCCCTAAATACA+CGG 0.657282 tig0028229:+38955 Msa1437260:three_prime_UTR
TTTATATTAGATGATAACTG+AGG 0.658562 tig0028229:-37219 None:intergenic
ACAAGACATTAACAATGAGG+AGG 0.664360 tig0028229:+35411 Msa1437260:CDS
TGAGTGGATTCCAGATCCAG+AGG 0.665421 tig0028229:+36154 Msa1437260:CDS
CACATGCTACATTGGTCTGG+TGG 0.668772 tig0028229:-38815 None:intergenic
GTCAGCCTTGTTCATCGACG+AGG 0.669777 tig0028229:-38758 None:intergenic
TACAGAAATACTGAAATGGG+AGG 0.669814 tig0028229:+36029 Msa1437260:CDS
GAAGGAGGATACCATTCCGA+CGG 0.673337 tig0028229:-35730 None:intergenic
GGAGGATACCATTCCGACGG+CGG 0.673907 tig0028229:-35727 None:intergenic
AGAAAGCTGACTTGGCAACG+TGG 0.688129 tig0028229:-37316 None:intergenic
ATGTCAATATAGAGATCGCG+CGG 0.698371 tig0028229:+37507 Msa1437260:CDS
GAAAGAAGAATCTTGCATGG+TGG 0.712797 tig0028229:+37532 Msa1437260:CDS
TGGTCAAACAATCTGCAAAG+CGG 0.722667 tig0028229:+36724 Msa1437260:CDS
TATATCCATCGGTTTCCACG+GGG 0.724216 tig0028229:-35898 None:intergenic
CCACTTGCGTTAGATCTCGG+TGG 0.727619 tig0028229:+38907 Msa1437260:three_prime_UTR
ACAGATAGGAACCTTGACCG+AGG 0.745062 tig0028229:+35474 Msa1437260:CDS
TGATACAGTGACAGACCCCG+TGG 0.770896 tig0028229:+35883 Msa1437260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTATTTTTTTTTAA+TGG + tig0028229:38614-38633 Msa1437260:intron 0.0%
!! ATAAAAAATCAAATTATACA+TGG - tig0028229:36916-36935 None:intergenic 10.0%
!! AATTCAAAATTAAAATTCTT+AGG + tig0028229:37762-37781 Msa1437260:intron 10.0%
!! ATATAATCATCAATAGAAAA+AGG - tig0028229:35765-35784 None:intergenic 15.0%
!!! TAAATTTCATTTTAGAATCA+TGG + tig0028229:36965-36984 Msa1437260:intron 15.0%
!! GTATAGTTCATATAAATATA+GGG - tig0028229:37943-37962 None:intergenic 15.0%
!!! AAATTTCTACATTTTCTATT+TGG - tig0028229:38198-38217 None:intergenic 15.0%
!! AAATAGAAAATGTAGAAATT+TGG + tig0028229:38197-38216 Msa1437260:intron 15.0%
!!! TTTTTTATAATGACAAACTT+TGG + tig0028229:38496-38515 Msa1437260:intron 15.0%
!!! TATAAGTTGAAAACAACATA+TGG - tig0028229:34925-34944 None:intergenic 20.0%
!! ATTAAATTGCTTATCCAAAA+AGG + tig0028229:35019-35038 Msa1437260:intron 20.0%
!! TTAAATTGCTTATCCAAAAA+GGG + tig0028229:35020-35039 Msa1437260:intron 20.0%
!!! TATTATTCATAAGCTTGTTA+AGG - tig0028229:35169-35188 None:intergenic 20.0%
!!! CAAAAATAGTATTTTCAAGT+TGG + tig0028229:35297-35316 Msa1437260:intron 20.0%
!!! TAGGAGTATTCAATAAAATA+CGG - tig0028229:35545-35564 None:intergenic 20.0%
!!! TGCACATCATAATAATTTTT+TGG - tig0028229:36326-36345 None:intergenic 20.0%
!! ATCAAACATATGAACAAAAT+AGG - tig0028229:36525-36544 None:intergenic 20.0%
!! GAAATTTACGTATAATAACA+AGG - tig0028229:36953-36972 None:intergenic 20.0%
!! AAGTTACAATTTATAAGCAA+TGG + tig0028229:36990-37009 Msa1437260:intron 20.0%
!! AGTTACAATTTATAAGCAAT+GGG + tig0028229:36991-37010 Msa1437260:intron 20.0%
!! TTTCAAAATAAAGCTGTATT+GGG + tig0028229:37035-37054 Msa1437260:intron 20.0%
!! TTTATATTAGATGATAACTG+AGG - tig0028229:37222-37241 None:intergenic 20.0%
!!! CAATGGTATAGTTTTTAAAT+AGG - tig0028229:37811-37830 None:intergenic 20.0%
!! TCTGTTATATATAAGCTAAT+TGG - tig0028229:37840-37859 None:intergenic 20.0%
!! TGTGATAATATTAAAAGATC+TGG + tig0028229:37893-37912 Msa1437260:intron 20.0%
!! GGTATAGTTCATATAAATAT+AGG - tig0028229:37944-37963 None:intergenic 20.0%
!! CATTATTGTATTATTGTACA+TGG - tig0028229:38140-38159 None:intergenic 20.0%
!! ATAAAAGTTTATAAAAGAGG+AGG - tig0028229:38267-38286 None:intergenic 20.0%
!! TCGATAAAAGTTTATAAAAG+AGG - tig0028229:38270-38289 None:intergenic 20.0%
!!! AAATTCACATTGTTTTATGT+TGG - tig0028229:38479-38498 None:intergenic 20.0%
!!! GCAAAATTCACAATTTTTAT+CGG + tig0028229:38575-38594 Msa1437260:intron 20.0%
!!! CATGTGTTTTTATTATGATT+AGG + tig0028229:38832-38851 Msa1437260:three_prime_UTR 20.0%
!! CATAGTTTAAGAGATTTTGT+AGG - tig0028229:34380-34399 None:intergenic 25.0%
! CTACAAAATCTCTTAAACTA+TGG + tig0028229:34378-34397 Msa1437260:exon 25.0%
! TGGTGTTTATTACAAATTTG+AGG + tig0028229:34751-34770 Msa1437260:intron 25.0%
! GTTTATTACAAATTTGAGGA+TGG + tig0028229:34755-34774 Msa1437260:intron 25.0%
! AAAAATAAGTCAATCCAAAC+AGG + tig0028229:35232-35251 Msa1437260:intron 25.0%
! TAAGAGATGTAAATGACTTA+GGG - tig0028229:35258-35277 None:intergenic 25.0%
! ATAAGAGATGTAAATGACTT+AGG - tig0028229:35259-35278 None:intergenic 25.0%
! AATACAAGACATTAACAATG+AGG + tig0028229:35408-35427 Msa1437260:CDS 25.0%
! AATACGGTAATAAAGTTTGA+AGG - tig0028229:35529-35548 None:intergenic 25.0%
! TTAAAATTAAGCTAACCAAC+AGG + tig0028229:35798-35817 Msa1437260:intron 25.0%
! CTTATTGATCTATACTTATC+TGG + tig0028229:35833-35852 Msa1437260:CDS 25.0%
! TAATGAGAAGTTATATCCAT+CGG - tig0028229:35912-35931 None:intergenic 25.0%
! ACAGAAAAGTTACATAAGTT+AGG - tig0028229:35952-35971 None:intergenic 25.0%
! AATTATTATGATGTGCACTA+TGG + tig0028229:36329-36348 Msa1437260:intron 25.0%
! ATTATTATGATGTGCACTAT+GGG + tig0028229:36330-36349 Msa1437260:intron 25.0%
! GGTATACTGCAAAAATAAAT+GGG + tig0028229:36351-36370 Msa1437260:intron 25.0%
! ACTAGATTACTGAATAAACA+AGG - tig0028229:36418-36437 None:intergenic 25.0%
!! TGTTTGATTTATACCATTAC+AGG + tig0028229:36537-36556 Msa1437260:intron 25.0%
! CAAAAAAGATGGAAAAGATA+GGG + tig0028229:36680-36699 Msa1437260:CDS 25.0%
!! TCTAAATTTCTTTTCAACAG+AGG - tig0028229:36763-36782 None:intergenic 25.0%
! GTTACAATTTATAAGCAATG+GGG + tig0028229:36992-37011 Msa1437260:intron 25.0%
! GTTTCAAAATAAAGCTGTAT+TGG + tig0028229:37034-37053 Msa1437260:intron 25.0%
!! TATATTGACATTTTATCTGC+TGG - tig0028229:37498-37517 None:intergenic 25.0%
! ATATATAACAGAATTGCATC+AGG + tig0028229:37848-37867 Msa1437260:intron 25.0%
!! TATGTGTTATCTGAAATTTG+AGG - tig0028229:37920-37939 None:intergenic 25.0%
!! TGTACATGGTTTTTCTTTTT+TGG - tig0028229:38126-38145 None:intergenic 25.0%
! TAGAAAATGTAGAAATTTGG+AGG + tig0028229:38200-38219 Msa1437260:intron 25.0%
! AATAAAAACACATGCTACAT+TGG - tig0028229:38826-38845 None:intergenic 25.0%
! GATGTTCTGATATGTTGTTT+CGG + tig0028229:34314-34333 Msa1437260:five_prime_UTR 30.0%
!! TCGTTATTTTCCGAAATTTG+AGG - tig0028229:34412-34431 None:intergenic 30.0%
ATAACGATTCTACCTTTGTT+TGG + tig0028229:34425-34444 Msa1437260:CDS 30.0%
! TAACGATTCTACCTTTGTTT+GGG + tig0028229:34426-34445 Msa1437260:CDS 30.0%
TTCAAACGTTGTCAAAATGA+AGG - tig0028229:34494-34513 None:intergenic 30.0%
!!! AATTTCTGGTTTTGTTGCAT+AGG + tig0028229:34622-34641 Msa1437260:intron 30.0%
TTATTAACTTTGTGCAGTAG+TGG + tig0028229:34683-34702 Msa1437260:intron 30.0%
! TTTTATCATGATCCTAATGC+TGG + tig0028229:34707-34726 Msa1437260:CDS 30.0%
TTTGTAATAAACACCATCAC+TGG - tig0028229:34747-34766 None:intergenic 30.0%
TGTACCTTTAGATTGCAATA+AGG + tig0028229:34784-34803 Msa1437260:intron 30.0%
ATTTGAACTTATCTATCCAC+TGG + tig0028229:34844-34863 Msa1437260:intron 30.0%
!!! AGTTTTATTGCTTGTGTTTC+AGG + tig0028229:35327-35346 Msa1437260:intron 30.0%
! TGTATTTGTTGAGTTCTTTC+AGG - tig0028229:35394-35413 None:intergenic 30.0%
ATTGAAACTAACCAACAGAT+AGG + tig0028229:35460-35479 Msa1437260:CDS 30.0%
TACAAAGACATCTACTTAGA+AGG - tig0028229:35659-35678 None:intergenic 30.0%
TCATCAATAGAAAAAGGATG+TGG - tig0028229:35759-35778 None:intergenic 30.0%
AGCTTACAGAAATACTGAAA+TGG + tig0028229:36025-36044 Msa1437260:intron 30.0%
GCTTACAGAAATACTGAAAT+GGG + tig0028229:36026-36045 Msa1437260:intron 30.0%
TCATTCTATCTCTATGTACT+TGG + tig0028229:36290-36309 Msa1437260:intron 30.0%
GGGTATACTGCAAAAATAAA+TGG + tig0028229:36350-36369 Msa1437260:intron 30.0%
AAGGTTCAAGTAACTAAGAA+GGG + tig0028229:36385-36404 Msa1437260:intron 30.0%
TCTTGTTCGAAGAAGAAAAA+TGG + tig0028229:36562-36581 Msa1437260:CDS 30.0%
! CCTATCTTTTCCATCTTTTT+TGG - tig0028229:36682-36701 None:intergenic 30.0%
CCAAAAAAGATGGAAAAGAT+AGG + tig0028229:36679-36698 Msa1437260:CDS 30.0%
TTACTCTTGTATTTGCTTAC+TGG + tig0028229:36841-36860 Msa1437260:intron 30.0%
! TATTGTCATGCTCTTTTATC+AGG + tig0028229:37105-37124 Msa1437260:intron 30.0%
GATGTACTGAATTACATGAA+GGG - tig0028229:37421-37440 None:intergenic 30.0%
TGATGTACTGAATTACATGA+AGG - tig0028229:37422-37441 None:intergenic 30.0%
AAGTGTTAATGCGTATACAT+TGG - tig0028229:37965-37984 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + tig0028229:38075-38094 Msa1437260:intron 30.0%
!!! GGTTTTTCTTTTTTGGTAGT+GGG - tig0028229:38119-38138 None:intergenic 30.0%
!!! TGGTTTTTCTTTTTTGGTAG+TGG - tig0028229:38120-38139 None:intergenic 30.0%
TGTGATGTACAACAATACAT+AGG - tig0028229:38941-38960 None:intergenic 30.0%
ACAATCAAATGCGATTTAAC+TGG - tig0028229:38985-39004 None:intergenic 30.0%
! TTTCCGAAATTTGAGGTTCT+GGG - tig0028229:34405-34424 None:intergenic 35.0%
!! TTTTCCGAAATTTGAGGTTC+TGG - tig0028229:34406-34425 None:intergenic 35.0%
AAACGTTGTCAAAATGAAGG+TGG - tig0028229:34491-34510 None:intergenic 35.0%
ACAAGCTTGTGCTAAATTTC+TGG + tig0028229:34608-34627 Msa1437260:intron 35.0%
TGCATAGGTTTATGCATATG+TGG + tig0028229:34637-34656 Msa1437260:intron 35.0%
CCTACCTTATTGCAATCTAA+AGG - tig0028229:34791-34810 None:intergenic 35.0%
CCTTTAGATTGCAATAAGGT+AGG + tig0028229:34788-34807 Msa1437260:intron 35.0%
AGATTGCAATAAGGTAGGTT+TGG + tig0028229:34793-34812 Msa1437260:intron 35.0%
AATCCAAACAGATGCTTAGA+AGG - tig0028229:34819-34838 None:intergenic 35.0%
TTCTAAGCATCTGTTTGGAT+TGG + tig0028229:34818-34837 Msa1437260:intron 35.0%
CTTATCCAAAAAGGGTCTAA+GGG + tig0028229:35028-35047 Msa1437260:intron 35.0%
!! TTGTTGAGTTCTTTCAGGTT+TGG - tig0028229:35389-35408 None:intergenic 35.0%
ACAAGACATTAACAATGAGG+AGG + tig0028229:35411-35430 Msa1437260:CDS 35.0%
TAGTTTCAATTTCGTTTCCG+AGG - tig0028229:35450-35469 None:intergenic 35.0%
TTGAATACTCCTATGCTTTG+AGG + tig0028229:35552-35571 Msa1437260:intron 35.0%
AATGTTGATGCTCAAAGCAA+AGG - tig0028229:35592-35611 None:intergenic 35.0%
!! TGCTTTGAGCATCAACATTT+TGG + tig0028229:35593-35612 Msa1437260:intron 35.0%
CAATAGAAAAAGGATGTGGA+AGG - tig0028229:35755-35774 None:intergenic 35.0%
AACTTCTCATTAGAAGCTGA+TGG + tig0028229:35920-35939 Msa1437260:CDS 35.0%
TACAGAAATACTGAAATGGG+AGG + tig0028229:36029-36048 Msa1437260:CDS 35.0%
GATGCTTATCAAGTAGAAGA+AGG + tig0028229:36131-36150 Msa1437260:CDS 35.0%
GATGAAAATCACTTAGCTGA+TGG + tig0028229:36176-36195 Msa1437260:CDS 35.0%
AGTGGAAATACCTTCATCTA+TGG - tig0028229:36207-36226 None:intergenic 35.0%
!! TAAATGGGTTGTTTCCTTGA+AGG + tig0028229:36366-36385 Msa1437260:intron 35.0%
CTTAGTTACTTGAACCTTCA+AGG - tig0028229:36383-36402 None:intergenic 35.0%
GAAGGTTCAAGTAACTAAGA+AGG + tig0028229:36384-36403 Msa1437260:intron 35.0%
!! AGACACAAAAGCATTTAGCA+GGG - tig0028229:36453-36472 None:intergenic 35.0%
TGTTCGAAGAAGAAAAATGG+CGG + tig0028229:36565-36584 Msa1437260:CDS 35.0%
ATGGTCAAGTCATTGAATCA+AGG + tig0028229:36595-36614 Msa1437260:CDS 35.0%
CATTGAATCAAGGAAAGATC+TGG + tig0028229:36605-36624 Msa1437260:CDS 35.0%
AAAAGATGGAAAAGATAGGG+TGG + tig0028229:36683-36702 Msa1437260:CDS 35.0%
TTTCAACAGAGGAGATAGAT+GGG - tig0028229:36752-36771 None:intergenic 35.0%
! TTTTCAACAGAGGAGATAGA+TGG - tig0028229:36753-36772 None:intergenic 35.0%
CTATTATGAAGTCACATGAG+AGG + tig0028229:36887-36906 Msa1437260:intron 35.0%
!! TTAGTGCTAGAAGTACTTCT+TGG + tig0028229:37069-37088 Msa1437260:intron 35.0%
AGTACTTCTTGGAATGAACA+CGG + tig0028229:37080-37099 Msa1437260:intron 35.0%
! ATCCCAATCTTTTGTTGGAT+CGG - tig0028229:37196-37215 None:intergenic 35.0%
! GGAAAATCCCAATCTTTTGT+TGG - tig0028229:37201-37220 None:intergenic 35.0%
TGTAGGAATTTCAGTTGAAG+TGG - tig0028229:37283-37302 None:intergenic 35.0%
CAATTTCCAAGTACAAACCT+TGG - tig0028229:37346-37365 None:intergenic 35.0%
ATTACATGAAGGGTGATCAT+GGG - tig0028229:37411-37430 None:intergenic 35.0%
AATTACATGAAGGGTGATCA+TGG - tig0028229:37412-37431 None:intergenic 35.0%
! TTAAAGATGTCATTTGGACC+AGG + tig0028229:37649-37668 Msa1437260:CDS 35.0%
TATGCCAGAAATCTTCTAGA+AGG + tig0028229:37676-37695 Msa1437260:CDS 35.0%
! AGAAATCTTCTAGAAGGCAT+GGG + tig0028229:37682-37701 Msa1437260:CDS 35.0%
AAGCTAATTGGCAATGTCAA+TGG - tig0028229:37828-37847 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + tig0028229:38080-38099 Msa1437260:intron 35.0%
CTAACTCATCCTTACAAAAC+TGG + tig0028229:38223-38242 Msa1437260:intron 35.0%
!! CTTTACAAGCCAGTTTTGTA+AGG - tig0028229:38235-38254 None:intergenic 35.0%
!! TACAAAACTGGCTTGTAAAG+TGG + tig0028229:38235-38254 Msa1437260:intron 35.0%
!! ACAAAACTGGCTTGTAAAGT+GGG + tig0028229:38236-38255 Msa1437260:intron 35.0%
! GTTGAAGGTAAGTTTTTGTG+TGG - tig0028229:38796-38815 None:intergenic 35.0%
! TGTGAGTGTTGCAAATTCAA+AGG - tig0028229:38872-38891 None:intergenic 35.0%
ACTGGATTACCGTGTATTTA+GGG - tig0028229:38967-38986 None:intergenic 35.0%
AACTGGATTACCGTGTATTT+AGG - tig0028229:38968-38987 None:intergenic 35.0%
ATCGCATTTGATTGTGCTAT+TGG + tig0028229:38990-39009 Msa1437260:three_prime_UTR 35.0%
! TTGATTGTGCTATTGGTGTT+CGG + tig0028229:38997-39016 Msa1437260:three_prime_UTR 35.0%
! CGAATTTTCGTCCCAAACAA+AGG - tig0028229:34440-34459 None:intergenic 40.0%
AATGAAGGTGGAAAAGAACC+TGG - tig0028229:34479-34498 None:intergenic 40.0%
GCTTATCCAAAAAGGGTCTA+AGG + tig0028229:35027-35046 Msa1437260:intron 40.0%
TAAATGACTTAGGGCCTGTT+TGG - tig0028229:35249-35268 None:intergenic 40.0%
TTCAATTTCGTTTCCGAGGA+AGG - tig0028229:35446-35465 None:intergenic 40.0%
ATCAAGTGTCCTCAAAGCAT+AGG - tig0028229:35564-35583 None:intergenic 40.0%
AGAAAAAGGATGTGGAAGGA+AGG - tig0028229:35751-35770 None:intergenic 40.0%
AAGTGTGTCTTCTAACCTGT+TGG - tig0028229:35816-35835 None:intergenic 40.0%
!! TTATATCCATCGGTTTCCAC+GGG - tig0028229:35902-35921 None:intergenic 40.0%
!! GTTATATCCATCGGTTTCCA+CGG - tig0028229:35903-35922 None:intergenic 40.0%
!!! TCATGCCATTTTCATCTGCT+GGG - tig0028229:36070-36089 None:intergenic 40.0%
ATCAAGTAGAAGAAGGTGAG+TGG + tig0028229:36138-36157 Msa1437260:CDS 40.0%
! TGATTTTCATCCTCTGGATC+TGG - tig0028229:36167-36186 None:intergenic 40.0%
! GCTAAGTGATTTTCATCCTC+TGG - tig0028229:36173-36192 None:intergenic 40.0%
GATGGAAGTTCCATAGATGA+AGG + tig0028229:36194-36213 Msa1437260:CDS 40.0%
AGCTTGTGTCTACTACTAAC+TGG + tig0028229:36256-36275 Msa1437260:intron 40.0%
!! GACACAAAAGCATTTAGCAG+GGG - tig0028229:36452-36471 None:intergenic 40.0%
!! GAGACACAAAAGCATTTAGC+AGG - tig0028229:36454-36473 None:intergenic 40.0%
! AATGCTTTTGTGTCTCTGCA+TGG + tig0028229:36458-36477 Msa1437260:intron 40.0%
TTCGAACAAGATGCCTGTAA+TGG - tig0028229:36553-36572 None:intergenic 40.0%
GTTCGAAGAAGAAAAATGGC+GGG + tig0028229:36566-36585 Msa1437260:CDS 40.0%
!!! GGTTTTAGAGTTTCCAGTTG+TGG + tig0028229:36626-36645 Msa1437260:CDS 40.0%
! GTCAGAGCATCCAAAAAAGA+TGG + tig0028229:36669-36688 Msa1437260:CDS 40.0%
TGGTCAAACAATCTGCAAAG+CGG + tig0028229:36724-36743 Msa1437260:CDS 40.0%
TTGAGATGTACTTCGCAGAT+AGG - tig0028229:36792-36811 None:intergenic 40.0%
! TACTGGTACACGTCTAAAAC+AGG + tig0028229:36858-36877 Msa1437260:intron 40.0%
TATAAGCAATGGGGATAGTG+TGG + tig0028229:37001-37020 Msa1437260:intron 40.0%
TGCCGATCCAACAAAAGATT+GGG + tig0028229:37191-37210 Msa1437260:CDS 40.0%
GGAATTTCAGTTGAAGTGGA+AGG - tig0028229:37279-37298 None:intergenic 40.0%
TTGGATACAGAAAGCTGACT+TGG - tig0028229:37327-37346 None:intergenic 40.0%
AAGTCAGCTTTCTGTATCCA+AGG + tig0028229:37326-37345 Msa1437260:CDS 40.0%
CTGTATCCAAGGTTTGTACT+TGG + tig0028229:37337-37356 Msa1437260:intron 40.0%
ATGTCAATATAGAGATCGCG+CGG + tig0028229:37507-37526 Msa1437260:CDS 40.0%
GCTGAAAGAAGAATCTTGCA+TGG + tig0028229:37529-37548 Msa1437260:CDS 40.0%
GAAAGAAGAATCTTGCATGG+TGG + tig0028229:37532-37551 Msa1437260:CDS 40.0%
! GAGGCGTTAAAGATGTCATT+TGG + tig0028229:37643-37662 Msa1437260:CDS 40.0%
!! AGATTTCTGGCATAACTACC+TGG - tig0028229:37670-37689 None:intergenic 40.0%
! CATGCCTTCTAGAAGATTTC+TGG - tig0028229:37683-37702 None:intergenic 40.0%
! CAGAAATCTTCTAGAAGGCA+TGG + tig0028229:37681-37700 Msa1437260:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG + tig0028229:38081-38100 Msa1437260:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + tig0028229:38082-38101 Msa1437260:intron 40.0%
!! CAAAACTGGCTTGTAAAGTG+GGG + tig0028229:38237-38256 Msa1437260:intron 40.0%
AGAGTCCTATCTAACTGATG+TGG + tig0028229:38289-38308 Msa1437260:intron 40.0%
GAGTCCTATCTAACTGATGT+GGG + tig0028229:38290-38309 Msa1437260:intron 40.0%
TAGTCCCACATCAGTTAGAT+AGG - tig0028229:38297-38316 None:intergenic 40.0%
GCAACTCAAATGTCGCAATT+AGG + tig0028229:38331-38350 Msa1437260:intron 40.0%
GCAACTCAAATGTCGCAATT+AGG + tig0028229:38331-38350 Msa1437260:intron 40.0%
ATGTTTCCAACTGGCTGAAT+AGG - tig0028229:38716-38735 None:intergenic 40.0%
ATTCAGCCAGTTGGAAACAT+TGG + tig0028229:38716-38735 Msa1437260:CDS 40.0%
AAACACATGCTACATTGGTC+TGG - tig0028229:38821-38840 None:intergenic 40.0%
ATCACACTCCCCTAAATACA+CGG + tig0028229:38955-38974 Msa1437260:three_prime_UTR 40.0%
CTGGATTACCGTGTATTTAG+GGG - tig0028229:38966-38985 None:intergenic 40.0%
! TGATTGTGCTATTGGTGTTC+GGG + tig0028229:38998-39017 Msa1437260:three_prime_UTR 40.0%
GGACCCAGAACCTCAAATTT+CGG + tig0028229:34399-34418 Msa1437260:CDS 45.0%
ATCATGATCCTAATGCTGGC+TGG + tig0028229:34711-34730 Msa1437260:CDS 45.0%
CTATAGTACCAGCCAGCATT+AGG - tig0028229:34722-34741 None:intergenic 45.0%
TGGTACTATAGCACCAGTGA+TGG + tig0028229:34731-34750 Msa1437260:CDS 45.0%
TGGCCTTCTAAGCATCTGTT+TGG + tig0028229:34813-34832 Msa1437260:intron 45.0%
! AACGACCCTTAGACCCTTTT+TGG - tig0028229:35036-35055 None:intergenic 45.0%
AAAAGGGTCTAAGGGTCGTT+TGG + tig0028229:35036-35055 Msa1437260:intron 45.0%
GAGGATTGTTCTTCCTTCCT+CGG + tig0028229:35430-35449 Msa1437260:CDS 45.0%
AAAAGGATGTGGAAGGAAGG+AGG - tig0028229:35748-35767 None:intergenic 45.0%
!! TATATCCATCGGTTTCCACG+GGG - tig0028229:35901-35920 None:intergenic 45.0%
ATACTGAAATGGGAGGTGAC+TGG + tig0028229:36036-36055 Msa1437260:CDS 45.0%
!!! GTCATGCCATTTTCATCTGC+TGG - tig0028229:36071-36090 None:intergenic 45.0%
ATGCAATCTCACTCATGGTG+TGG - tig0028229:36501-36520 None:intergenic 45.0%
TAGGCATGCAATCTCACTCA+TGG - tig0028229:36506-36525 None:intergenic 45.0%
AGTTTCCAGTTGTGGACTTG+TGG + tig0028229:36634-36653 Msa1437260:CDS 45.0%
GTTTCCAGTTGTGGACTTGT+GGG + tig0028229:36635-36654 Msa1437260:CDS 45.0%
ATGGAAAAGATAGGGTGGCA+AGG + tig0028229:36688-36707 Msa1437260:CDS 45.0%
AAAAGATAGGGTGGCAAGGT+TGG + tig0028229:36692-36711 Msa1437260:CDS 45.0%
CTGCGAAGTACATCTCAATC+TGG + tig0028229:36794-36813 Msa1437260:CDS 45.0%
AATCTGGTACGCGTCAAAAC+AGG + tig0028229:36810-36829 Msa1437260:CDS 45.0%
AAACCCAAGTGCGAGATATG+TGG + tig0028229:37146-37165 Msa1437260:CDS 45.0%
AAGCCACATATCTCGCACTT+GGG - tig0028229:37152-37171 None:intergenic 45.0%
CTGCCGATCCAACAAAAGAT+TGG + tig0028229:37190-37209 Msa1437260:CDS 45.0%
GTGGGTAAATCTTTCGCTGT+AGG - tig0028229:37300-37319 None:intergenic 45.0%
AGAATCTTGCATGGTGGCTT+TGG + tig0028229:37538-37557 Msa1437260:CDS 45.0%
TCCAGAAGAAGCTACAGAAG+AGG + tig0028229:37624-37643 Msa1437260:CDS 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG + tig0028229:38053-38072 Msa1437260:intron 45.0%
!! ACATTTGAGTTGCCTCGTGT+TGG - tig0028229:38324-38343 None:intergenic 45.0%
AATGTCGCAATTAGGCGACT+AGG + tig0028229:38339-38358 Msa1437260:intron 45.0%
ATGTCGCAATTAGGCGACTA+GGG + tig0028229:38340-38359 Msa1437260:intron 45.0%
AGGCGGAATTTCCAATGATG+TGG + tig0028229:38377-38396 Msa1437260:intron 45.0%
GGCGGAATTTCCAATGATGT+GGG + tig0028229:38378-38397 Msa1437260:intron 45.0%
! GGCTTTTAGTCCCACATCAT+TGG - tig0028229:38391-38410 None:intergenic 45.0%
!! ACATTTGAGTTGCCTCGTGT+TGG - tig0028229:38324-38343 None:intergenic 45.0%
AATGTCGCAATTAGGCGACT+AGG + tig0028229:38339-38358 Msa1437260:intron 45.0%
ATGTCGCAATTAGGCGACTA+GGG + tig0028229:38340-38359 Msa1437260:intron 45.0%
GGACTTGGCAGTTCAACAAA+AGG + tig0028229:38680-38699 Msa1437260:CDS 45.0%
TGGCAGTTCAACAAAAGGCT+TGG + tig0028229:38685-38704 Msa1437260:CDS 45.0%
CAGTTCAACAAAAGGCTTGG+TGG + tig0028229:38688-38707 Msa1437260:CDS 45.0%
! TACATTGGTCTGGTGGTTGA+AGG - tig0028229:38811-38830 None:intergenic 45.0%
!! AAAATAATTAAATTATAGAA+TGG - tig0028229:38607-38626 None:intergenic 5.0%
CGCAACTTTACTTTCACGCC+AGG + tig0028229:34458-34477 Msa1437260:CDS 50.0%
CTCACAAGTGCTTATGCCAG+TGG - tig0028229:34863-34882 None:intergenic 50.0%
GGTCTAAGGGTCGTTTGGAT+TGG + tig0028229:35041-35060 Msa1437260:intron 50.0%
CGGTCAAGGTTCCTATCTGT+TGG - tig0028229:35474-35493 None:intergenic 50.0%
ACAGATAGGAACCTTGACCG+AGG + tig0028229:35474-35493 Msa1437260:CDS 50.0%
TCCACGAACAGTCCAACTTG+TGG + tig0028229:35694-35713 Msa1437260:CDS 50.0%
! TCCACAAGTTGGACTGTTCG+TGG - tig0028229:35698-35717 None:intergenic 50.0%
GAAGGAGGATACCATTCCGA+CGG - tig0028229:35733-35752 None:intergenic 50.0%
! ATTTTCATCTGCTGGGCCTG+TGG - tig0028229:36063-36082 None:intergenic 50.0%
ACAGGCCCAGCAGATGAAAA+TGG + tig0028229:36062-36081 Msa1437260:CDS 50.0%
! TGAGTGGATTCCAGATCCAG+AGG + tig0028229:36154-36173 Msa1437260:CDS 50.0%
CCTTAGACTTGCGAGCAAAG+TGG - tig0028229:36225-36244 None:intergenic 50.0%
CCACTTTGCTCGCAAGTCTA+AGG + tig0028229:36222-36241 Msa1437260:intron 50.0%
!! GAAAAATGGCGGGCTCAGTA+TGG + tig0028229:36576-36595 Msa1437260:CDS 50.0%
AGTTGTGGACTTGTGGGACT+GGG + tig0028229:36641-36660 Msa1437260:CDS 50.0%
TGGGGATAGTGTGGCTTACA+TGG + tig0028229:37010-37029 Msa1437260:intron 50.0%
GAAGCCACATATCTCGCACT+TGG - tig0028229:37153-37172 None:intergenic 50.0%
!! GAAAGCTGACTTGGCAACGT+GGG - tig0028229:37318-37337 None:intergenic 50.0%
!! AGAAAGCTGACTTGGCAACG+TGG - tig0028229:37319-37338 None:intergenic 50.0%
AAGGGTGATCATGGGAGAAG+GGG - tig0028229:37403-37422 None:intergenic 50.0%
GAAGGGTGATCATGGGAGAA+GGG - tig0028229:37404-37423 None:intergenic 50.0%
TGAAGGGTGATCATGGGAGA+AGG - tig0028229:37405-37424 None:intergenic 50.0%
!! TTGCATGGTGGCTTTGGTGT+TGG + tig0028229:37544-37563 Msa1437260:CDS 50.0%
ACACCAAGATTCTTCTGCCC+TGG - tig0028229:37571-37590 None:intergenic 50.0%
! GGGCAGAAGAATCTTGGTGT+CGG + tig0028229:37571-37590 Msa1437260:CDS 50.0%
GCTTCTTCTGGACAAGCATC+AGG - tig0028229:37616-37635 None:intergenic 50.0%
GCCTCTTCTGTAGCTTCTTC+TGG - tig0028229:37628-37647 None:intergenic 50.0%
! ATCTTCTAGAAGGCATGGGC+TGG + tig0028229:37686-37705 Msa1437260:CDS 50.0%
! GAGGTATGGACTGAGTTCTC+TGG + tig0028229:37712-37731 Msa1437260:intron 50.0%
TGCATCAGGTCATCATCACC+AGG + tig0028229:37862-37881 Msa1437260:intron 50.0%
GCATCAGGTCATCATCACCA+GGG + tig0028229:37863-37882 Msa1437260:intron 50.0%
AAGCTCACGAGGACTGTACA+TGG - tig0028229:38040-38059 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + tig0028229:38052-38071 Msa1437260:intron 50.0%
AGTGGGCAGAATTTGAACCC+CGG - tig0028229:38102-38121 None:intergenic 50.0%
TGGGACTAAAAGCCAACACG+AGG + tig0028229:38309-38328 Msa1437260:intron 50.0%
TGTCGCAATTAGGCGACTAG+GGG + tig0028229:38341-38360 Msa1437260:intron 50.0%
CTAGGGGCAGATCGCAATAA+AGG + tig0028229:38357-38376 Msa1437260:intron 50.0%
TGGGACTAAAAGCCAACACG+AGG + tig0028229:38309-38328 Msa1437260:intron 50.0%
TGTCGCAATTAGGCGACTAG+GGG + tig0028229:38341-38360 Msa1437260:intron 50.0%
CTAGGGGCAGATCGCAATAA+AGG + tig0028229:38357-38376 Msa1437260:intron 50.0%
AAGTCCTTCTCCCTGCACAA+GGG - tig0028229:38666-38685 None:intergenic 50.0%
GTGGAACCTATTCAGCCAGT+TGG + tig0028229:38707-38726 Msa1437260:CDS 50.0%
GCACTGCCAATGTTTCCAAC+TGG - tig0028229:38725-38744 None:intergenic 50.0%
GTTGGAAACATTGGCAGTGC+AGG + tig0028229:38725-38744 Msa1437260:CDS 50.0%
AAACATTGGCAGTGCAGGCT+TGG + tig0028229:38730-38749 Msa1437260:CDS 50.0%
AACATTGGCAGTGCAGGCTT+GGG + tig0028229:38731-38750 Msa1437260:CDS 50.0%
! CACATGCTACATTGGTCTGG+TGG - tig0028229:38818-38837 None:intergenic 50.0%
CAGCCACTTGCGTTAGATCT+CGG + tig0028229:38904-38923 Msa1437260:three_prime_UTR 50.0%
GAACCTTGACCGAGGAAGCA+GGG + tig0028229:35482-35501 Msa1437260:CDS 55.0%
AACCTTGACCGAGGAAGCAG+GGG + tig0028229:35483-35502 Msa1437260:CDS 55.0%
CTTACCATCCCCTGCTTCCT+CGG - tig0028229:35494-35513 None:intergenic 55.0%
GGTGGAGGGTTTCCACAAGT+TGG - tig0028229:35709-35728 None:intergenic 55.0%
TGATACAGTGACAGACCCCG+TGG + tig0028229:35883-35902 Msa1437260:CDS 55.0%
AGCATTTAGCAGGGGACTCG+AGG - tig0028229:36444-36463 None:intergenic 55.0%
CAGTCCCACAAGTCCACAAC+TGG - tig0028229:36642-36661 None:intergenic 55.0%
CAGTTGTGGACTTGTGGGAC+TGG + tig0028229:36640-36659 Msa1437260:CDS 55.0%
GGACTTGTGGGACTGGGAAA+TGG + tig0028229:36647-36666 Msa1437260:CDS 55.0%
! GATAGGGTGGCAAGGTTGGT+TGG + tig0028229:36696-36715 Msa1437260:CDS 55.0%
! GGCAAGGTTGGTTGGAAGAC+TGG + tig0028229:36704-36723 Msa1437260:CDS 55.0%
!! GTGGCTTTGGTGTTGGTCCA+GGG + tig0028229:37551-37570 Msa1437260:CDS 55.0%
GGTCCAGGGCAGAAGAATCT+TGG + tig0028229:37565-37584 Msa1437260:CDS 55.0%
!! TCTAGAAGGCATGGGCTGGA+AGG + tig0028229:37690-37709 Msa1437260:CDS 55.0%
TCAGGTCATCATCACCAGGG+CGG + tig0028229:37866-37885 Msa1437260:intron 55.0%
TATTATCACACACCCCGCCC+TGG - tig0028229:37883-37902 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - tig0028229:38051-38070 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + tig0028229:38048-38067 Msa1437260:intron 55.0%
GGGGCAGATCGCAATAAAGG+CGG + tig0028229:38360-38379 Msa1437260:intron 55.0%
GGGGCAGATCGCAATAAAGG+CGG + tig0028229:38360-38379 Msa1437260:intron 55.0%
CAAGTCCTTCTCCCTGCACA+AGG - tig0028229:38667-38686 None:intergenic 55.0%
CTTGTGCAGGGAGAAGGACT+TGG + tig0028229:38665-38684 Msa1437260:CDS 55.0%
ACATTGGCAGTGCAGGCTTG+GGG + tig0028229:38732-38751 Msa1437260:CDS 55.0%
!! GTCAGCCTTGTTCATCGACG+AGG - tig0028229:38761-38780 None:intergenic 55.0%
CGAGATCTAACGCAAGTGGC+TGG - tig0028229:38906-38925 None:intergenic 55.0%
CCACCGAGATCTAACGCAAG+TGG - tig0028229:38910-38929 None:intergenic 55.0%
CCACTTGCGTTAGATCTCGG+TGG + tig0028229:38907-38926 Msa1437260:three_prime_UTR 55.0%
GGAACCTTGACCGAGGAAGC+AGG + tig0028229:35481-35500 Msa1437260:CDS 60.0%
ATCCCCTGCTTCCTCGGTCA+AGG - tig0028229:35488-35507 None:intergenic 60.0%
TTGACCGAGGAAGCAGGGGA+TGG + tig0028229:35487-35506 Msa1437260:CDS 60.0%
GGAGGATACCATTCCGACGG+CGG - tig0028229:35730-35749 None:intergenic 60.0%
ACAGACCCCGTGGAAACCGA+TGG + tig0028229:35893-35912 Msa1437260:CDS 60.0%
ATGGGAGGTGACTGGACCAC+AGG + tig0028229:36044-36063 Msa1437260:CDS 60.0%
!! GGTGGCTTTGGTGTTGGTCC+AGG + tig0028229:37550-37569 Msa1437260:CDS 60.0%
!! AGAAGGCATGGGCTGGAAGG+AGG + tig0028229:37693-37712 Msa1437260:CDS 60.0%
!! GCATGGGCTGGAAGGAGGTA+TGG + tig0028229:37698-37717 Msa1437260:intron 60.0%
CAGGTCATCATCACCAGGGC+GGG + tig0028229:37867-37886 Msa1437260:intron 60.0%
AGGTCATCATCACCAGGGCG+GGG + tig0028229:37868-37887 Msa1437260:intron 60.0%
TTCTGTTCCCGCCCTTGTGC+AGG + tig0028229:38652-38671 Msa1437260:CDS 60.0%
TCTGTTCCCGCCCTTGTGCA+GGG + tig0028229:38653-38672 Msa1437260:CDS 60.0%
TCCTTCTCCCTGCACAAGGG+CGG - tig0028229:38663-38682 None:intergenic 60.0%
GGTGGCCTCGTCGATGAACA+AGG + tig0028229:38753-38772 Msa1437260:exon 60.0%
ACGCAAGTGGCTGGTGCGTA+GGG - tig0028229:38897-38916 None:intergenic 60.0%
AACGCAAGTGGCTGGTGCGT+AGG - tig0028229:38898-38917 None:intergenic 60.0%
TGGAAACCCTCCACCGCCGT+CGG + tig0028229:35714-35733 Msa1437260:CDS 65.0%
ACCATTCCGACGGCGGTGGA+GGG - tig0028229:35723-35742 None:intergenic 65.0%
TACCATTCCGACGGCGGTGG+AGG - tig0028229:35724-35743 None:intergenic 65.0%
GGATACCATTCCGACGGCGG+TGG - tig0028229:35727-35746 None:intergenic 65.0%
CCTTCTCCCTGCACAAGGGC+GGG - tig0028229:38662-38681 None:intergenic 65.0%
TTGGCAGTGCAGGCTTGGGG+TGG + tig0028229:38735-38754 Msa1437260:CDS 65.0%
ACCCTCCACCGCCGTCGGAA+TGG + tig0028229:35719-35738 Msa1437260:CDS 70.0%
CCCGCCCTTGTGCAGGGAGA+AGG + tig0028229:38659-38678 Msa1437260:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0028229 gene 34298 39045 34298 ID=Msa1437260;Name=Msa1437260
tig0028229 mRNA 34298 39045 34298 ID=Msa1437260-mRNA-1;Parent=Msa1437260;Name=Msa1437260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=99|0.77|0.8|1|1|1|10|276|499
tig0028229 exon 34298 34479 34298 ID=Msa1437260-mRNA-1:exon:10564;Parent=Msa1437260-mRNA-1
tig0028229 exon 34700 34754 34700 ID=Msa1437260-mRNA-1:exon:10565;Parent=Msa1437260-mRNA-1
tig0028229 exon 35349 35508 35349 ID=Msa1437260-mRNA-1:exon:10566;Parent=Msa1437260-mRNA-1
tig0028229 exon 35683 35740 35683 ID=Msa1437260-mRNA-1:exon:10567;Parent=Msa1437260-mRNA-1
tig0028229 exon 35820 35941 35820 ID=Msa1437260-mRNA-1:exon:10568;Parent=Msa1437260-mRNA-1
tig0028229 exon 36027 36215 36027 ID=Msa1437260-mRNA-1:exon:10569;Parent=Msa1437260-mRNA-1
tig0028229 exon 36559 36831 36559 ID=Msa1437260-mRNA-1:exon:10570;Parent=Msa1437260-mRNA-1
tig0028229 exon 37127 37347 37127 ID=Msa1437260-mRNA-1:exon:10571;Parent=Msa1437260-mRNA-1
tig0028229 exon 37499 37714 37499 ID=Msa1437260-mRNA-1:exon:10572;Parent=Msa1437260-mRNA-1
tig0028229 exon 38647 39045 38647 ID=Msa1437260-mRNA-1:exon:10573;Parent=Msa1437260-mRNA-1
tig0028229 five_prime_UTR 34298 34396 34298 ID=Msa1437260-mRNA-1:five_prime_utr;Parent=Msa1437260-mRNA-1
tig0028229 CDS 34397 34479 34397 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 34700 34754 34700 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 35349 35508 35349 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 35683 35740 35683 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 35820 35941 35820 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 36027 36215 36027 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 36559 36831 36559 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 37127 37347 37127 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 37499 37714 37499 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 CDS 38647 38769 38647 ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1
tig0028229 three_prime_UTR 38770 39045 38770 ID=Msa1437260-mRNA-1:three_prime_utr;Parent=Msa1437260-mRNA-1
Gene Sequence

>Msa1437260

ATGGACCCAGAACCTCAAATTTCGGAAAATAACGATTCTACCTTTGTTTGGGACGAAAATTCGCAACTTTACTTTCACGCCAGTAGTGGATTTTATCATGATCCTAATGCTGGCTGGTACTATAGCACCAGTGATGGTGATGATGATGTTGAAGAAATATATGTGTGCAAAGAAACCAAACCTGAAAGAACTCAACAAATACAAGACATTAACAATGAGGAGGATTGTTCTTCCTTCCTCGGAAACGAAATTGAAACTAACCAACAGATAGGAACCTTGACCGAGGAAGCAGGGGATGATGCAATGAACTCCACGAACAGTCCAACTTGTGGAAACCCTCCACCGCCGTCGGAATGGTTAGAAGACACACTTATTGATCTATACTTATCTGGCTACAACAACATAGCAGTTAGTGCAGCTGATACAGTGACAGACCCCGTGGAAACCGATGGATATAACTTCTCATTAGAAGCTGATGCTTACAGAAATACTGAAATGGGAGGTGACTGGACCACAGGCCCAGCAGATGAAAATGGCATGACTGATAATGAAAAAACTGTAGATGAAATTGTAGCTTACAGCGATGCTTATCAAGTAGAAGAAGGTGAGTGGATTCCAGATCCAGAGGATGAAAATCACTTAGCTGATGGAAGTTCCATAGATGAAGGCATCTTGTTCGAAGAAGAAAAATGGCGGGCTCAGTATGGTCAAGTCATTGAATCAAGGAAAGATCTGGTTTTAGAGTTTCCAGTTGTGGACTTGTGGGACTGGGAAATGGTCAGAGCATCCAAAAAAGATGGAAAAGATAGGGTGGCAAGGTTGGTTGGAAGACTGGTCAAACAATCTGCAAAGCGGCACCCATCTATCTCCTCTGTTGAAAAGAAATTTAGATCTGCTCCTATCTGCGAAGTACATCTCAATCTGGTACGCGTCAAAACAGGACAAGTGTATAGATTGCGAAACCCAAGTGCGAGATATGTGGCTTCATTATCAAGTTATGATTCTGCCGATCCAACAAAAGATTGGGATTTTCCTCAGTTATCATCTAATATAAATAGCAATCATGTCTCTAAGTCAAGTCAAAGTACTCCTTCCACTTCAACTGAAATTCCTACAGCGAAAGATTTACCCACGTTGCCAAGTCAGCTTTCTGTATCCAAGCAGATAAAATGTCAATATAGAGATCGCGCGGCTGAAAGAAGAATCTTGCATGGTGGCTTTGGTGTTGGTCCAGGGCAGAAGAATCTTGGTGTCGGTGATGATACAACATCATTGCCTGATGCTTGTCCAGAAGAAGCTACAGAAGAGGCGTTAAAGATGTCATTTGGACCAGGTAGTTATGCCAGAAATCTTCTAGAAGGCATGGGCTGGAAGGAGATATTTTCTGTTCCCGCCCTTGTGCAGGGAGAAGGACTTGGCAGTTCAACAAAAGGCTTGGTGGAACCTATTCAGCCAGTTGGAAACATTGGCAGTGCAGGCTTGGGGTGGCCTCGTCGATGA

Protein sequence

>Msa1437260

MDPEPQISENNDSTFVWDENSQLYFHASSGFYHDPNAGWYYSTSDGDDDVEEIYVCKETKPERTQQIQDINNEEDCSSFLGNEIETNQQIGTLTEEAGDDAMNSTNSPTCGNPPPPSEWLEDTLIDLYLSGYNNIAVSAADTVTDPVETDGYNFSLEADAYRNTEMGGDWTTGPADENGMTDNEKTVDEIVAYSDAYQVEEGEWIPDPEDENHLADGSSIDEGILFEEEKWRAQYGQVIESRKDLVLEFPVVDLWDWEMVRASKKDGKDRVARLVGRLVKQSAKRHPSISSVEKKFRSAPICEVHLNLVRVKTGQVYRLRNPSARYVASLSSYDSADPTKDWDFPQLSSNINSNHVSKSSQSTPSTSTEIPTAKDLPTLPSQLSVSKQIKCQYRDRAAERRILHGGFGVGPGQKNLGVGDDTTSLPDACPEEATEEALKMSFGPGSYARNLLEGMGWKEIFSVPALVQGEGLGSSTKGLVEPIQPVGNIGSAGLGWPRR*