Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437260 | XP_024633885.1 | 89.922 | 516 | 26 | 2 | 1 | 499 | 1 | 507 | 0.0 | 918 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437260 | I3SGI5 | 89.535 | 516 | 28 | 2 | 1 | 499 | 1 | 507 | 0.0 | 913 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0064380 | Msa1437260 | 0.800674 | 1.289893e-48 | -8.615850e-47 |
Msa0191050 | Msa1437260 | 0.827711 | 1.345255e-54 | -8.615850e-47 |
Msa0233350 | Msa1437260 | 0.817366 | 3.423154e-52 | -8.615850e-47 |
Msa1304820 | Msa1437260 | 0.812348 | 4.435304e-51 | -8.615850e-47 |
Msa0450490 | Msa1437260 | 0.944449 | 1.909352e-103 | -8.615850e-47 |
Msa0477080 | Msa1437260 | 0.810658 | 1.033142e-50 | -8.615850e-47 |
Msa0510920 | Msa1437260 | 0.816230 | 6.155725e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437260 | MtrunA17_Chr3g0117161 | 92.462 | 398 | 21 | 1 | 102 | 499 | 1 | 389 | 0.0 | 728 |
Msa1437260 | MtrunA17_Chr3g0117151 | 81.034 | 116 | 5 | 1 | 1 | 99 | 1 | 116 | 1.59e-58 | 189 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437260 | AT4G34140.3 | 38.462 | 572 | 228 | 15 | 2 | 499 | 5 | 526 | 1.18e-98 | 307 |
Msa1437260 | AT4G34140.1 | 38.569 | 573 | 227 | 15 | 2 | 499 | 5 | 527 | 2.69e-98 | 306 |
Msa1437260 | AT4G34140.2 | 38.394 | 573 | 228 | 15 | 2 | 499 | 5 | 527 | 9.83e-98 | 305 |
Msa1437260 | AT4G34140.5 | 43.869 | 367 | 129 | 9 | 195 | 499 | 9 | 360 | 2.23e-81 | 257 |
Msa1437260 | AT4G34140.4 | 43.869 | 367 | 129 | 9 | 195 | 499 | 36 | 387 | 1.44e-80 | 256 |
Msa1437260 | AT4G34140.9 | 43.750 | 368 | 127 | 9 | 195 | 499 | 36 | 386 | 4.62e-80 | 255 |
Msa1437260 | AT4G34140.8 | 43.478 | 368 | 130 | 9 | 195 | 499 | 9 | 361 | 1.33e-79 | 253 |
Msa1437260 | AT4G34140.7 | 43.478 | 368 | 130 | 9 | 195 | 499 | 36 | 388 | 8.68e-79 | 251 |
Msa1437260 | AT4G34140.6 | 43.976 | 332 | 118 | 7 | 227 | 499 | 25 | 347 | 8.22e-74 | 237 |
Msa1437260 | AT4G34140.10 | 40.678 | 354 | 154 | 7 | 12 | 349 | 14 | 327 | 4.71e-69 | 228 |
Find 152 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATTTGTTGAGTTCTTTC+AGG | 0.164384 | tig0028229:-35391 | None:intergenic |
AACTGGATTACCGTGTATTT+AGG | 0.190469 | tig0028229:-38965 | None:intergenic |
CATGCCTTCTAGAAGATTTC+TGG | 0.200653 | tig0028229:-37680 | None:intergenic |
CTACAAAATCTCTTAAACTA+TGG | 0.262255 | tig0028229:+34378 | Msa1437260:exon |
GCCTCTTCTGTAGCTTCTTC+TGG | 0.265752 | tig0028229:-37625 | None:intergenic |
CTTATTGATCTATACTTATC+TGG | 0.274374 | tig0028229:+35833 | Msa1437260:CDS |
GGTGGCTTTGGTGTTGGTCC+AGG | 0.281454 | tig0028229:+37550 | Msa1437260:CDS |
ATAACGATTCTACCTTTGTT+TGG | 0.286937 | tig0028229:+34425 | Msa1437260:CDS |
TTCTGTTCCCGCCCTTGTGC+AGG | 0.315698 | tig0028229:+38652 | Msa1437260:CDS |
ATGTTTCCAACTGGCTGAAT+AGG | 0.318885 | tig0028229:-38713 | None:intergenic |
ACTGGATTACCGTGTATTTA+GGG | 0.319680 | tig0028229:-38964 | None:intergenic |
ATCGCATTTGATTGTGCTAT+TGG | 0.331143 | tig0028229:+38990 | Msa1437260:three_prime_UTR |
AGTGGAAATACCTTCATCTA+TGG | 0.335384 | tig0028229:-36204 | None:intergenic |
ACAATCAAATGCGATTTAAC+TGG | 0.343342 | tig0028229:-38982 | None:intergenic |
TAACGATTCTACCTTTGTTT+GGG | 0.351558 | tig0028229:+34426 | Msa1437260:CDS |
AACATTGGCAGTGCAGGCTT+GGG | 0.359973 | tig0028229:+38731 | Msa1437260:CDS |
TTGATTGTGCTATTGGTGTT+CGG | 0.363400 | tig0028229:+38997 | Msa1437260:three_prime_UTR |
ACAGGCCCAGCAGATGAAAA+TGG | 0.380870 | tig0028229:+36062 | Msa1437260:CDS |
TGATTGTGCTATTGGTGTTC+GGG | 0.383279 | tig0028229:+38998 | Msa1437260:three_prime_UTR |
CTATAGTACCAGCCAGCATT+AGG | 0.390043 | tig0028229:-34719 | None:intergenic |
TTTCCGAAATTTGAGGTTCT+GGG | 0.393041 | tig0028229:-34402 | None:intergenic |
CAGTTGTGGACTTGTGGGAC+TGG | 0.396053 | tig0028229:+36640 | Msa1437260:CDS |
GAGGCGTTAAAGATGTCATT+TGG | 0.400128 | tig0028229:+37643 | Msa1437260:CDS |
TTGTTGAGTTCTTTCAGGTT+TGG | 0.403639 | tig0028229:-35386 | None:intergenic |
AAACATTGGCAGTGCAGGCT+TGG | 0.407324 | tig0028229:+38730 | Msa1437260:CDS |
GGACCCAGAACCTCAAATTT+CGG | 0.413387 | tig0028229:+34399 | Msa1437260:CDS |
CTGCCGATCCAACAAAAGAT+TGG | 0.415464 | tig0028229:+37190 | Msa1437260:CDS |
GGCAAGGTTGGTTGGAAGAC+TGG | 0.422436 | tig0028229:+36704 | Msa1437260:CDS |
GTTTCCAGTTGTGGACTTGT+GGG | 0.427219 | tig0028229:+36635 | Msa1437260:CDS |
AGCTTACAGAAATACTGAAA+TGG | 0.427789 | tig0028229:+36025 | Msa1437260:intron |
CAGTCCCACAAGTCCACAAC+TGG | 0.428086 | tig0028229:-36639 | None:intergenic |
CCCGCCCTTGTGCAGGGAGA+AGG | 0.431469 | tig0028229:+38659 | Msa1437260:CDS |
AGAATCTTGCATGGTGGCTT+TGG | 0.433461 | tig0028229:+37538 | Msa1437260:CDS |
AAAAGATAGGGTGGCAAGGT+TGG | 0.437322 | tig0028229:+36692 | Msa1437260:CDS |
TGCCGATCCAACAAAAGATT+GGG | 0.443261 | tig0028229:+37191 | Msa1437260:CDS |
TACCATTCCGACGGCGGTGG+AGG | 0.443987 | tig0028229:-35721 | None:intergenic |
GCTTCTTCTGGACAAGCATC+AGG | 0.444285 | tig0028229:-37613 | None:intergenic |
AGTTTCCAGTTGTGGACTTG+TGG | 0.448878 | tig0028229:+36634 | Msa1437260:CDS |
GTTGGAAACATTGGCAGTGC+AGG | 0.451094 | tig0028229:+38725 | Msa1437260:CDS |
CTTACCATCCCCTGCTTCCT+CGG | 0.451447 | tig0028229:-35491 | None:intergenic |
GCTTACAGAAATACTGAAAT+GGG | 0.451792 | tig0028229:+36026 | Msa1437260:intron |
GAGGATTGTTCTTCCTTCCT+CGG | 0.454567 | tig0028229:+35430 | Msa1437260:CDS |
TATGCCAGAAATCTTCTAGA+AGG | 0.454930 | tig0028229:+37676 | Msa1437260:CDS |
CATTGAATCAAGGAAAGATC+TGG | 0.457483 | tig0028229:+36605 | Msa1437260:CDS |
GGACTTGTGGGACTGGGAAA+TGG | 0.461025 | tig0028229:+36647 | Msa1437260:CDS |
AATCTGGTACGCGTCAAAAC+AGG | 0.461723 | tig0028229:+36810 | Msa1437260:CDS |
TTGAGATGTACTTCGCAGAT+AGG | 0.463041 | tig0028229:-36789 | None:intergenic |
GCACTGCCAATGTTTCCAAC+TGG | 0.470042 | tig0028229:-38722 | None:intergenic |
TTGCATGGTGGCTTTGGTGT+TGG | 0.471657 | tig0028229:+37544 | Msa1437260:CDS |
CGGTCAAGGTTCCTATCTGT+TGG | 0.472224 | tig0028229:-35471 | None:intergenic |
GTGGCTTTGGTGTTGGTCCA+GGG | 0.472256 | tig0028229:+37551 | Msa1437260:CDS |
TTCAATTTCGTTTCCGAGGA+AGG | 0.473128 | tig0028229:-35443 | None:intergenic |
GATAGGGTGGCAAGGTTGGT+TGG | 0.473323 | tig0028229:+36696 | Msa1437260:CDS |
ATCTTCTAGAAGGCATGGGC+TGG | 0.474580 | tig0028229:+37686 | Msa1437260:CDS |
CGCAACTTTACTTTCACGCC+AGG | 0.476804 | tig0028229:+34458 | Msa1437260:CDS |
GGAACCTTGACCGAGGAAGC+AGG | 0.477060 | tig0028229:+35481 | Msa1437260:CDS |
ATTGAAACTAACCAACAGAT+AGG | 0.478031 | tig0028229:+35460 | Msa1437260:CDS |
ACGCAAGTGGCTGGTGCGTA+GGG | 0.481820 | tig0028229:-38894 | None:intergenic |
TCCACAAGTTGGACTGTTCG+TGG | 0.482684 | tig0028229:-35695 | None:intergenic |
GGTCCAGGGCAGAAGAATCT+TGG | 0.483376 | tig0028229:+37565 | Msa1437260:CDS |
CAAGTCCTTCTCCCTGCACA+AGG | 0.485026 | tig0028229:-38664 | None:intergenic |
CCTTCTCCCTGCACAAGGGC+GGG | 0.486959 | tig0028229:-38659 | None:intergenic |
CTTGTGCAGGGAGAAGGACT+TGG | 0.487602 | tig0028229:+38665 | Msa1437260:CDS |
CTGCGAAGTACATCTCAATC+TGG | 0.490416 | tig0028229:+36794 | Msa1437260:CDS |
ACACCAAGATTCTTCTGCCC+TGG | 0.490581 | tig0028229:-37568 | None:intergenic |
GATGTTCTGATATGTTGTTT+CGG | 0.493749 | tig0028229:+34314 | Msa1437260:five_prime_UTR |
TTGGCAGTGCAGGCTTGGGG+TGG | 0.496258 | tig0028229:+38735 | Msa1437260:CDS |
CAGTTCAACAAAAGGCTTGG+TGG | 0.498063 | tig0028229:+38688 | Msa1437260:CDS |
AAACACATGCTACATTGGTC+TGG | 0.500130 | tig0028229:-38818 | None:intergenic |
GGACTTGGCAGTTCAACAAA+AGG | 0.504360 | tig0028229:+38680 | Msa1437260:CDS |
AGTTGTGGACTTGTGGGACT+GGG | 0.509025 | tig0028229:+36641 | Msa1437260:CDS |
AAGTCAGCTTTCTGTATCCA+AGG | 0.510213 | tig0028229:+37326 | Msa1437260:CDS |
CAGCCACTTGCGTTAGATCT+CGG | 0.510703 | tig0028229:+38904 | Msa1437260:three_prime_UTR |
TTTGTAATAAACACCATCAC+TGG | 0.513294 | tig0028229:-34744 | None:intergenic |
ATCCCCTGCTTCCTCGGTCA+AGG | 0.516110 | tig0028229:-35485 | None:intergenic |
ACCCTCCACCGCCGTCGGAA+TGG | 0.516570 | tig0028229:+35719 | Msa1437260:CDS |
ATCATGATCCTAATGCTGGC+TGG | 0.520822 | tig0028229:+34711 | Msa1437260:CDS |
TTATATCCATCGGTTTCCAC+GGG | 0.522689 | tig0028229:-35899 | None:intergenic |
GTTATATCCATCGGTTTCCA+CGG | 0.523283 | tig0028229:-35900 | None:intergenic |
TCTGTTCCCGCCCTTGTGCA+GGG | 0.524418 | tig0028229:+38653 | Msa1437260:CDS |
AACTTCTCATTAGAAGCTGA+TGG | 0.525343 | tig0028229:+35920 | Msa1437260:CDS |
CAGAAATCTTCTAGAAGGCA+TGG | 0.525345 | tig0028229:+37681 | Msa1437260:CDS |
TGGCAGTTCAACAAAAGGCT+TGG | 0.525531 | tig0028229:+38685 | Msa1437260:CDS |
GGATACCATTCCGACGGCGG+TGG | 0.526658 | tig0028229:-35724 | None:intergenic |
GGAATTTCAGTTGAAGTGGA+AGG | 0.529631 | tig0028229:-37276 | None:intergenic |
GTGGAACCTATTCAGCCAGT+TGG | 0.535283 | tig0028229:+38707 | Msa1437260:CDS |
ATGGGAGGTGACTGGACCAC+AGG | 0.535287 | tig0028229:+36044 | Msa1437260:CDS |
AACGCAAGTGGCTGGTGCGT+AGG | 0.535703 | tig0028229:-38895 | None:intergenic |
TACATTGGTCTGGTGGTTGA+AGG | 0.536103 | tig0028229:-38808 | None:intergenic |
TCCTTCTCCCTGCACAAGGG+CGG | 0.537892 | tig0028229:-38660 | None:intergenic |
ATGGTCAAGTCATTGAATCA+AGG | 0.539010 | tig0028229:+36595 | Msa1437260:CDS |
TAATGAGAAGTTATATCCAT+CGG | 0.540938 | tig0028229:-35909 | None:intergenic |
GAAGCCACATATCTCGCACT+TGG | 0.541343 | tig0028229:-37150 | None:intergenic |
GATGAAAATCACTTAGCTGA+TGG | 0.548544 | tig0028229:+36176 | Msa1437260:CDS |
CGAGATCTAACGCAAGTGGC+TGG | 0.549793 | tig0028229:-38903 | None:intergenic |
ATTCAGCCAGTTGGAAACAT+TGG | 0.550272 | tig0028229:+38716 | Msa1437260:CDS |
TCTAGAAGGCATGGGCTGGA+AGG | 0.551981 | tig0028229:+37690 | Msa1437260:CDS |
ATACTGAAATGGGAGGTGAC+TGG | 0.558400 | tig0028229:+36036 | Msa1437260:CDS |
TTTCAACAGAGGAGATAGAT+GGG | 0.558751 | tig0028229:-36749 | None:intergenic |
ACCATTCCGACGGCGGTGGA+GGG | 0.559175 | tig0028229:-35720 | None:intergenic |
AGATTTCTGGCATAACTACC+TGG | 0.559707 | tig0028229:-37667 | None:intergenic |
TTGGATACAGAAAGCTGACT+TGG | 0.564129 | tig0028229:-37324 | None:intergenic |
GAACCTTGACCGAGGAAGCA+GGG | 0.564978 | tig0028229:+35482 | Msa1437260:CDS |
AAACCCAAGTGCGAGATATG+TGG | 0.566437 | tig0028229:+37146 | Msa1437260:CDS |
GATGGAAGTTCCATAGATGA+AGG | 0.567701 | tig0028229:+36194 | Msa1437260:CDS |
GGTGGCCTCGTCGATGAACA+AGG | 0.574701 | tig0028229:+38753 | Msa1437260:exon |
GGTGGAGGGTTTCCACAAGT+TGG | 0.574803 | tig0028229:-35706 | None:intergenic |
TCCACGAACAGTCCAACTTG+TGG | 0.576946 | tig0028229:+35694 | Msa1437260:CDS |
GTGGGTAAATCTTTCGCTGT+AGG | 0.578293 | tig0028229:-37297 | None:intergenic |
TGGAAACCCTCCACCGCCGT+CGG | 0.581504 | tig0028229:+35714 | Msa1437260:CDS |
GATGCTTATCAAGTAGAAGA+AGG | 0.583550 | tig0028229:+36131 | Msa1437260:CDS |
TCCAGAAGAAGCTACAGAAG+AGG | 0.585922 | tig0028229:+37624 | Msa1437260:CDS |
ACATTGGCAGTGCAGGCTTG+GGG | 0.591205 | tig0028229:+38732 | Msa1437260:CDS |
TGTAGGAATTTCAGTTGAAG+TGG | 0.593062 | tig0028229:-37280 | None:intergenic |
AGAAATCTTCTAGAAGGCAT+GGG | 0.593920 | tig0028229:+37682 | Msa1437260:CDS |
CTGGATTACCGTGTATTTAG+GGG | 0.594159 | tig0028229:-38963 | None:intergenic |
AGAAGGCATGGGCTGGAAGG+AGG | 0.595542 | tig0028229:+37693 | Msa1437260:CDS |
AAGCCACATATCTCGCACTT+GGG | 0.596356 | tig0028229:-37149 | None:intergenic |
TAGTTTCAATTTCGTTTCCG+AGG | 0.598650 | tig0028229:-35447 | None:intergenic |
ATGGAAAAGATAGGGTGGCA+AGG | 0.600283 | tig0028229:+36688 | Msa1437260:CDS |
ACAGACCCCGTGGAAACCGA+TGG | 0.614452 | tig0028229:+35893 | Msa1437260:CDS |
AACCTTGACCGAGGAAGCAG+GGG | 0.617715 | tig0028229:+35483 | Msa1437260:CDS |
CCACCGAGATCTAACGCAAG+TGG | 0.618868 | tig0028229:-38907 | None:intergenic |
TTAAAGATGTCATTTGGACC+AGG | 0.619131 | tig0028229:+37649 | Msa1437260:CDS |
TGTGATGTACAACAATACAT+AGG | 0.619990 | tig0028229:-38938 | None:intergenic |
GGGCAGAAGAATCTTGGTGT+CGG | 0.634541 | tig0028229:+37571 | Msa1437260:CDS |
GAAAGCTGACTTGGCAACGT+GGG | 0.634656 | tig0028229:-37315 | None:intergenic |
TTGACCGAGGAAGCAGGGGA+TGG | 0.636386 | tig0028229:+35487 | Msa1437260:CDS |
ATCAAGTAGAAGAAGGTGAG+TGG | 0.644722 | tig0028229:+36138 | Msa1437260:CDS |
AAGTCCTTCTCCCTGCACAA+GGG | 0.644870 | tig0028229:-38663 | None:intergenic |
AATACAAGACATTAACAATG+AGG | 0.647640 | tig0028229:+35408 | Msa1437260:CDS |
AAAAGATGGAAAAGATAGGG+TGG | 0.647950 | tig0028229:+36683 | Msa1437260:CDS |
GCTGAAAGAAGAATCTTGCA+TGG | 0.649213 | tig0028229:+37529 | Msa1437260:CDS |
TGGTACTATAGCACCAGTGA+TGG | 0.651452 | tig0028229:+34731 | Msa1437260:CDS |
TGTGAGTGTTGCAAATTCAA+AGG | 0.656462 | tig0028229:-38869 | None:intergenic |
ATCACACTCCCCTAAATACA+CGG | 0.657282 | tig0028229:+38955 | Msa1437260:three_prime_UTR |
TTTATATTAGATGATAACTG+AGG | 0.658562 | tig0028229:-37219 | None:intergenic |
ACAAGACATTAACAATGAGG+AGG | 0.664360 | tig0028229:+35411 | Msa1437260:CDS |
TGAGTGGATTCCAGATCCAG+AGG | 0.665421 | tig0028229:+36154 | Msa1437260:CDS |
CACATGCTACATTGGTCTGG+TGG | 0.668772 | tig0028229:-38815 | None:intergenic |
GTCAGCCTTGTTCATCGACG+AGG | 0.669777 | tig0028229:-38758 | None:intergenic |
TACAGAAATACTGAAATGGG+AGG | 0.669814 | tig0028229:+36029 | Msa1437260:CDS |
GAAGGAGGATACCATTCCGA+CGG | 0.673337 | tig0028229:-35730 | None:intergenic |
GGAGGATACCATTCCGACGG+CGG | 0.673907 | tig0028229:-35727 | None:intergenic |
AGAAAGCTGACTTGGCAACG+TGG | 0.688129 | tig0028229:-37316 | None:intergenic |
ATGTCAATATAGAGATCGCG+CGG | 0.698371 | tig0028229:+37507 | Msa1437260:CDS |
GAAAGAAGAATCTTGCATGG+TGG | 0.712797 | tig0028229:+37532 | Msa1437260:CDS |
TGGTCAAACAATCTGCAAAG+CGG | 0.722667 | tig0028229:+36724 | Msa1437260:CDS |
TATATCCATCGGTTTCCACG+GGG | 0.724216 | tig0028229:-35898 | None:intergenic |
CCACTTGCGTTAGATCTCGG+TGG | 0.727619 | tig0028229:+38907 | Msa1437260:three_prime_UTR |
ACAGATAGGAACCTTGACCG+AGG | 0.745062 | tig0028229:+35474 | Msa1437260:CDS |
TGATACAGTGACAGACCCCG+TGG | 0.770896 | tig0028229:+35883 | Msa1437260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAATTATTTTTTTTTAA+TGG | + | tig0028229:38614-38633 | Msa1437260:intron | 0.0% |
!! | ATAAAAAATCAAATTATACA+TGG | - | tig0028229:36916-36935 | None:intergenic | 10.0% |
!! | AATTCAAAATTAAAATTCTT+AGG | + | tig0028229:37762-37781 | Msa1437260:intron | 10.0% |
!! | ATATAATCATCAATAGAAAA+AGG | - | tig0028229:35765-35784 | None:intergenic | 15.0% |
!!! | TAAATTTCATTTTAGAATCA+TGG | + | tig0028229:36965-36984 | Msa1437260:intron | 15.0% |
!! | GTATAGTTCATATAAATATA+GGG | - | tig0028229:37943-37962 | None:intergenic | 15.0% |
!!! | AAATTTCTACATTTTCTATT+TGG | - | tig0028229:38198-38217 | None:intergenic | 15.0% |
!! | AAATAGAAAATGTAGAAATT+TGG | + | tig0028229:38197-38216 | Msa1437260:intron | 15.0% |
!!! | TTTTTTATAATGACAAACTT+TGG | + | tig0028229:38496-38515 | Msa1437260:intron | 15.0% |
!!! | TATAAGTTGAAAACAACATA+TGG | - | tig0028229:34925-34944 | None:intergenic | 20.0% |
!! | ATTAAATTGCTTATCCAAAA+AGG | + | tig0028229:35019-35038 | Msa1437260:intron | 20.0% |
!! | TTAAATTGCTTATCCAAAAA+GGG | + | tig0028229:35020-35039 | Msa1437260:intron | 20.0% |
!!! | TATTATTCATAAGCTTGTTA+AGG | - | tig0028229:35169-35188 | None:intergenic | 20.0% |
!!! | CAAAAATAGTATTTTCAAGT+TGG | + | tig0028229:35297-35316 | Msa1437260:intron | 20.0% |
!!! | TAGGAGTATTCAATAAAATA+CGG | - | tig0028229:35545-35564 | None:intergenic | 20.0% |
!!! | TGCACATCATAATAATTTTT+TGG | - | tig0028229:36326-36345 | None:intergenic | 20.0% |
!! | ATCAAACATATGAACAAAAT+AGG | - | tig0028229:36525-36544 | None:intergenic | 20.0% |
!! | GAAATTTACGTATAATAACA+AGG | - | tig0028229:36953-36972 | None:intergenic | 20.0% |
!! | AAGTTACAATTTATAAGCAA+TGG | + | tig0028229:36990-37009 | Msa1437260:intron | 20.0% |
!! | AGTTACAATTTATAAGCAAT+GGG | + | tig0028229:36991-37010 | Msa1437260:intron | 20.0% |
!! | TTTCAAAATAAAGCTGTATT+GGG | + | tig0028229:37035-37054 | Msa1437260:intron | 20.0% |
!! | TTTATATTAGATGATAACTG+AGG | - | tig0028229:37222-37241 | None:intergenic | 20.0% |
!!! | CAATGGTATAGTTTTTAAAT+AGG | - | tig0028229:37811-37830 | None:intergenic | 20.0% |
!! | TCTGTTATATATAAGCTAAT+TGG | - | tig0028229:37840-37859 | None:intergenic | 20.0% |
!! | TGTGATAATATTAAAAGATC+TGG | + | tig0028229:37893-37912 | Msa1437260:intron | 20.0% |
!! | GGTATAGTTCATATAAATAT+AGG | - | tig0028229:37944-37963 | None:intergenic | 20.0% |
!! | CATTATTGTATTATTGTACA+TGG | - | tig0028229:38140-38159 | None:intergenic | 20.0% |
!! | ATAAAAGTTTATAAAAGAGG+AGG | - | tig0028229:38267-38286 | None:intergenic | 20.0% |
!! | TCGATAAAAGTTTATAAAAG+AGG | - | tig0028229:38270-38289 | None:intergenic | 20.0% |
!!! | AAATTCACATTGTTTTATGT+TGG | - | tig0028229:38479-38498 | None:intergenic | 20.0% |
!!! | GCAAAATTCACAATTTTTAT+CGG | + | tig0028229:38575-38594 | Msa1437260:intron | 20.0% |
!!! | CATGTGTTTTTATTATGATT+AGG | + | tig0028229:38832-38851 | Msa1437260:three_prime_UTR | 20.0% |
!! | CATAGTTTAAGAGATTTTGT+AGG | - | tig0028229:34380-34399 | None:intergenic | 25.0% |
! | CTACAAAATCTCTTAAACTA+TGG | + | tig0028229:34378-34397 | Msa1437260:exon | 25.0% |
! | TGGTGTTTATTACAAATTTG+AGG | + | tig0028229:34751-34770 | Msa1437260:intron | 25.0% |
! | GTTTATTACAAATTTGAGGA+TGG | + | tig0028229:34755-34774 | Msa1437260:intron | 25.0% |
! | AAAAATAAGTCAATCCAAAC+AGG | + | tig0028229:35232-35251 | Msa1437260:intron | 25.0% |
! | TAAGAGATGTAAATGACTTA+GGG | - | tig0028229:35258-35277 | None:intergenic | 25.0% |
! | ATAAGAGATGTAAATGACTT+AGG | - | tig0028229:35259-35278 | None:intergenic | 25.0% |
! | AATACAAGACATTAACAATG+AGG | + | tig0028229:35408-35427 | Msa1437260:CDS | 25.0% |
! | AATACGGTAATAAAGTTTGA+AGG | - | tig0028229:35529-35548 | None:intergenic | 25.0% |
! | TTAAAATTAAGCTAACCAAC+AGG | + | tig0028229:35798-35817 | Msa1437260:intron | 25.0% |
! | CTTATTGATCTATACTTATC+TGG | + | tig0028229:35833-35852 | Msa1437260:CDS | 25.0% |
! | TAATGAGAAGTTATATCCAT+CGG | - | tig0028229:35912-35931 | None:intergenic | 25.0% |
! | ACAGAAAAGTTACATAAGTT+AGG | - | tig0028229:35952-35971 | None:intergenic | 25.0% |
! | AATTATTATGATGTGCACTA+TGG | + | tig0028229:36329-36348 | Msa1437260:intron | 25.0% |
! | ATTATTATGATGTGCACTAT+GGG | + | tig0028229:36330-36349 | Msa1437260:intron | 25.0% |
! | GGTATACTGCAAAAATAAAT+GGG | + | tig0028229:36351-36370 | Msa1437260:intron | 25.0% |
! | ACTAGATTACTGAATAAACA+AGG | - | tig0028229:36418-36437 | None:intergenic | 25.0% |
!! | TGTTTGATTTATACCATTAC+AGG | + | tig0028229:36537-36556 | Msa1437260:intron | 25.0% |
! | CAAAAAAGATGGAAAAGATA+GGG | + | tig0028229:36680-36699 | Msa1437260:CDS | 25.0% |
!! | TCTAAATTTCTTTTCAACAG+AGG | - | tig0028229:36763-36782 | None:intergenic | 25.0% |
! | GTTACAATTTATAAGCAATG+GGG | + | tig0028229:36992-37011 | Msa1437260:intron | 25.0% |
! | GTTTCAAAATAAAGCTGTAT+TGG | + | tig0028229:37034-37053 | Msa1437260:intron | 25.0% |
!! | TATATTGACATTTTATCTGC+TGG | - | tig0028229:37498-37517 | None:intergenic | 25.0% |
! | ATATATAACAGAATTGCATC+AGG | + | tig0028229:37848-37867 | Msa1437260:intron | 25.0% |
!! | TATGTGTTATCTGAAATTTG+AGG | - | tig0028229:37920-37939 | None:intergenic | 25.0% |
!! | TGTACATGGTTTTTCTTTTT+TGG | - | tig0028229:38126-38145 | None:intergenic | 25.0% |
! | TAGAAAATGTAGAAATTTGG+AGG | + | tig0028229:38200-38219 | Msa1437260:intron | 25.0% |
! | AATAAAAACACATGCTACAT+TGG | - | tig0028229:38826-38845 | None:intergenic | 25.0% |
! | GATGTTCTGATATGTTGTTT+CGG | + | tig0028229:34314-34333 | Msa1437260:five_prime_UTR | 30.0% |
!! | TCGTTATTTTCCGAAATTTG+AGG | - | tig0028229:34412-34431 | None:intergenic | 30.0% |
ATAACGATTCTACCTTTGTT+TGG | + | tig0028229:34425-34444 | Msa1437260:CDS | 30.0% | |
! | TAACGATTCTACCTTTGTTT+GGG | + | tig0028229:34426-34445 | Msa1437260:CDS | 30.0% |
TTCAAACGTTGTCAAAATGA+AGG | - | tig0028229:34494-34513 | None:intergenic | 30.0% | |
!!! | AATTTCTGGTTTTGTTGCAT+AGG | + | tig0028229:34622-34641 | Msa1437260:intron | 30.0% |
TTATTAACTTTGTGCAGTAG+TGG | + | tig0028229:34683-34702 | Msa1437260:intron | 30.0% | |
! | TTTTATCATGATCCTAATGC+TGG | + | tig0028229:34707-34726 | Msa1437260:CDS | 30.0% |
TTTGTAATAAACACCATCAC+TGG | - | tig0028229:34747-34766 | None:intergenic | 30.0% | |
TGTACCTTTAGATTGCAATA+AGG | + | tig0028229:34784-34803 | Msa1437260:intron | 30.0% | |
ATTTGAACTTATCTATCCAC+TGG | + | tig0028229:34844-34863 | Msa1437260:intron | 30.0% | |
!!! | AGTTTTATTGCTTGTGTTTC+AGG | + | tig0028229:35327-35346 | Msa1437260:intron | 30.0% |
! | TGTATTTGTTGAGTTCTTTC+AGG | - | tig0028229:35394-35413 | None:intergenic | 30.0% |
ATTGAAACTAACCAACAGAT+AGG | + | tig0028229:35460-35479 | Msa1437260:CDS | 30.0% | |
TACAAAGACATCTACTTAGA+AGG | - | tig0028229:35659-35678 | None:intergenic | 30.0% | |
TCATCAATAGAAAAAGGATG+TGG | - | tig0028229:35759-35778 | None:intergenic | 30.0% | |
AGCTTACAGAAATACTGAAA+TGG | + | tig0028229:36025-36044 | Msa1437260:intron | 30.0% | |
GCTTACAGAAATACTGAAAT+GGG | + | tig0028229:36026-36045 | Msa1437260:intron | 30.0% | |
TCATTCTATCTCTATGTACT+TGG | + | tig0028229:36290-36309 | Msa1437260:intron | 30.0% | |
GGGTATACTGCAAAAATAAA+TGG | + | tig0028229:36350-36369 | Msa1437260:intron | 30.0% | |
AAGGTTCAAGTAACTAAGAA+GGG | + | tig0028229:36385-36404 | Msa1437260:intron | 30.0% | |
TCTTGTTCGAAGAAGAAAAA+TGG | + | tig0028229:36562-36581 | Msa1437260:CDS | 30.0% | |
! | CCTATCTTTTCCATCTTTTT+TGG | - | tig0028229:36682-36701 | None:intergenic | 30.0% |
CCAAAAAAGATGGAAAAGAT+AGG | + | tig0028229:36679-36698 | Msa1437260:CDS | 30.0% | |
TTACTCTTGTATTTGCTTAC+TGG | + | tig0028229:36841-36860 | Msa1437260:intron | 30.0% | |
! | TATTGTCATGCTCTTTTATC+AGG | + | tig0028229:37105-37124 | Msa1437260:intron | 30.0% |
GATGTACTGAATTACATGAA+GGG | - | tig0028229:37421-37440 | None:intergenic | 30.0% | |
TGATGTACTGAATTACATGA+AGG | - | tig0028229:37422-37441 | None:intergenic | 30.0% | |
AAGTGTTAATGCGTATACAT+TGG | - | tig0028229:37965-37984 | None:intergenic | 30.0% | |
GACAATGCATAAAATATGCA+AGG | + | tig0028229:38075-38094 | Msa1437260:intron | 30.0% | |
!!! | GGTTTTTCTTTTTTGGTAGT+GGG | - | tig0028229:38119-38138 | None:intergenic | 30.0% |
!!! | TGGTTTTTCTTTTTTGGTAG+TGG | - | tig0028229:38120-38139 | None:intergenic | 30.0% |
TGTGATGTACAACAATACAT+AGG | - | tig0028229:38941-38960 | None:intergenic | 30.0% | |
ACAATCAAATGCGATTTAAC+TGG | - | tig0028229:38985-39004 | None:intergenic | 30.0% | |
! | TTTCCGAAATTTGAGGTTCT+GGG | - | tig0028229:34405-34424 | None:intergenic | 35.0% |
!! | TTTTCCGAAATTTGAGGTTC+TGG | - | tig0028229:34406-34425 | None:intergenic | 35.0% |
AAACGTTGTCAAAATGAAGG+TGG | - | tig0028229:34491-34510 | None:intergenic | 35.0% | |
ACAAGCTTGTGCTAAATTTC+TGG | + | tig0028229:34608-34627 | Msa1437260:intron | 35.0% | |
TGCATAGGTTTATGCATATG+TGG | + | tig0028229:34637-34656 | Msa1437260:intron | 35.0% | |
CCTACCTTATTGCAATCTAA+AGG | - | tig0028229:34791-34810 | None:intergenic | 35.0% | |
CCTTTAGATTGCAATAAGGT+AGG | + | tig0028229:34788-34807 | Msa1437260:intron | 35.0% | |
AGATTGCAATAAGGTAGGTT+TGG | + | tig0028229:34793-34812 | Msa1437260:intron | 35.0% | |
AATCCAAACAGATGCTTAGA+AGG | - | tig0028229:34819-34838 | None:intergenic | 35.0% | |
TTCTAAGCATCTGTTTGGAT+TGG | + | tig0028229:34818-34837 | Msa1437260:intron | 35.0% | |
CTTATCCAAAAAGGGTCTAA+GGG | + | tig0028229:35028-35047 | Msa1437260:intron | 35.0% | |
!! | TTGTTGAGTTCTTTCAGGTT+TGG | - | tig0028229:35389-35408 | None:intergenic | 35.0% |
ACAAGACATTAACAATGAGG+AGG | + | tig0028229:35411-35430 | Msa1437260:CDS | 35.0% | |
TAGTTTCAATTTCGTTTCCG+AGG | - | tig0028229:35450-35469 | None:intergenic | 35.0% | |
TTGAATACTCCTATGCTTTG+AGG | + | tig0028229:35552-35571 | Msa1437260:intron | 35.0% | |
AATGTTGATGCTCAAAGCAA+AGG | - | tig0028229:35592-35611 | None:intergenic | 35.0% | |
!! | TGCTTTGAGCATCAACATTT+TGG | + | tig0028229:35593-35612 | Msa1437260:intron | 35.0% |
CAATAGAAAAAGGATGTGGA+AGG | - | tig0028229:35755-35774 | None:intergenic | 35.0% | |
AACTTCTCATTAGAAGCTGA+TGG | + | tig0028229:35920-35939 | Msa1437260:CDS | 35.0% | |
TACAGAAATACTGAAATGGG+AGG | + | tig0028229:36029-36048 | Msa1437260:CDS | 35.0% | |
GATGCTTATCAAGTAGAAGA+AGG | + | tig0028229:36131-36150 | Msa1437260:CDS | 35.0% | |
GATGAAAATCACTTAGCTGA+TGG | + | tig0028229:36176-36195 | Msa1437260:CDS | 35.0% | |
AGTGGAAATACCTTCATCTA+TGG | - | tig0028229:36207-36226 | None:intergenic | 35.0% | |
!! | TAAATGGGTTGTTTCCTTGA+AGG | + | tig0028229:36366-36385 | Msa1437260:intron | 35.0% |
CTTAGTTACTTGAACCTTCA+AGG | - | tig0028229:36383-36402 | None:intergenic | 35.0% | |
GAAGGTTCAAGTAACTAAGA+AGG | + | tig0028229:36384-36403 | Msa1437260:intron | 35.0% | |
!! | AGACACAAAAGCATTTAGCA+GGG | - | tig0028229:36453-36472 | None:intergenic | 35.0% |
TGTTCGAAGAAGAAAAATGG+CGG | + | tig0028229:36565-36584 | Msa1437260:CDS | 35.0% | |
ATGGTCAAGTCATTGAATCA+AGG | + | tig0028229:36595-36614 | Msa1437260:CDS | 35.0% | |
CATTGAATCAAGGAAAGATC+TGG | + | tig0028229:36605-36624 | Msa1437260:CDS | 35.0% | |
AAAAGATGGAAAAGATAGGG+TGG | + | tig0028229:36683-36702 | Msa1437260:CDS | 35.0% | |
TTTCAACAGAGGAGATAGAT+GGG | - | tig0028229:36752-36771 | None:intergenic | 35.0% | |
! | TTTTCAACAGAGGAGATAGA+TGG | - | tig0028229:36753-36772 | None:intergenic | 35.0% |
CTATTATGAAGTCACATGAG+AGG | + | tig0028229:36887-36906 | Msa1437260:intron | 35.0% | |
!! | TTAGTGCTAGAAGTACTTCT+TGG | + | tig0028229:37069-37088 | Msa1437260:intron | 35.0% |
AGTACTTCTTGGAATGAACA+CGG | + | tig0028229:37080-37099 | Msa1437260:intron | 35.0% | |
! | ATCCCAATCTTTTGTTGGAT+CGG | - | tig0028229:37196-37215 | None:intergenic | 35.0% |
! | GGAAAATCCCAATCTTTTGT+TGG | - | tig0028229:37201-37220 | None:intergenic | 35.0% |
TGTAGGAATTTCAGTTGAAG+TGG | - | tig0028229:37283-37302 | None:intergenic | 35.0% | |
CAATTTCCAAGTACAAACCT+TGG | - | tig0028229:37346-37365 | None:intergenic | 35.0% | |
ATTACATGAAGGGTGATCAT+GGG | - | tig0028229:37411-37430 | None:intergenic | 35.0% | |
AATTACATGAAGGGTGATCA+TGG | - | tig0028229:37412-37431 | None:intergenic | 35.0% | |
! | TTAAAGATGTCATTTGGACC+AGG | + | tig0028229:37649-37668 | Msa1437260:CDS | 35.0% |
TATGCCAGAAATCTTCTAGA+AGG | + | tig0028229:37676-37695 | Msa1437260:CDS | 35.0% | |
! | AGAAATCTTCTAGAAGGCAT+GGG | + | tig0028229:37682-37701 | Msa1437260:CDS | 35.0% |
AAGCTAATTGGCAATGTCAA+TGG | - | tig0028229:37828-37847 | None:intergenic | 35.0% | |
TGCATAAAATATGCAAGGTC+CGG | + | tig0028229:38080-38099 | Msa1437260:intron | 35.0% | |
CTAACTCATCCTTACAAAAC+TGG | + | tig0028229:38223-38242 | Msa1437260:intron | 35.0% | |
!! | CTTTACAAGCCAGTTTTGTA+AGG | - | tig0028229:38235-38254 | None:intergenic | 35.0% |
!! | TACAAAACTGGCTTGTAAAG+TGG | + | tig0028229:38235-38254 | Msa1437260:intron | 35.0% |
!! | ACAAAACTGGCTTGTAAAGT+GGG | + | tig0028229:38236-38255 | Msa1437260:intron | 35.0% |
! | GTTGAAGGTAAGTTTTTGTG+TGG | - | tig0028229:38796-38815 | None:intergenic | 35.0% |
! | TGTGAGTGTTGCAAATTCAA+AGG | - | tig0028229:38872-38891 | None:intergenic | 35.0% |
ACTGGATTACCGTGTATTTA+GGG | - | tig0028229:38967-38986 | None:intergenic | 35.0% | |
AACTGGATTACCGTGTATTT+AGG | - | tig0028229:38968-38987 | None:intergenic | 35.0% | |
ATCGCATTTGATTGTGCTAT+TGG | + | tig0028229:38990-39009 | Msa1437260:three_prime_UTR | 35.0% | |
! | TTGATTGTGCTATTGGTGTT+CGG | + | tig0028229:38997-39016 | Msa1437260:three_prime_UTR | 35.0% |
! | CGAATTTTCGTCCCAAACAA+AGG | - | tig0028229:34440-34459 | None:intergenic | 40.0% |
AATGAAGGTGGAAAAGAACC+TGG | - | tig0028229:34479-34498 | None:intergenic | 40.0% | |
GCTTATCCAAAAAGGGTCTA+AGG | + | tig0028229:35027-35046 | Msa1437260:intron | 40.0% | |
TAAATGACTTAGGGCCTGTT+TGG | - | tig0028229:35249-35268 | None:intergenic | 40.0% | |
TTCAATTTCGTTTCCGAGGA+AGG | - | tig0028229:35446-35465 | None:intergenic | 40.0% | |
ATCAAGTGTCCTCAAAGCAT+AGG | - | tig0028229:35564-35583 | None:intergenic | 40.0% | |
AGAAAAAGGATGTGGAAGGA+AGG | - | tig0028229:35751-35770 | None:intergenic | 40.0% | |
AAGTGTGTCTTCTAACCTGT+TGG | - | tig0028229:35816-35835 | None:intergenic | 40.0% | |
!! | TTATATCCATCGGTTTCCAC+GGG | - | tig0028229:35902-35921 | None:intergenic | 40.0% |
!! | GTTATATCCATCGGTTTCCA+CGG | - | tig0028229:35903-35922 | None:intergenic | 40.0% |
!!! | TCATGCCATTTTCATCTGCT+GGG | - | tig0028229:36070-36089 | None:intergenic | 40.0% |
ATCAAGTAGAAGAAGGTGAG+TGG | + | tig0028229:36138-36157 | Msa1437260:CDS | 40.0% | |
! | TGATTTTCATCCTCTGGATC+TGG | - | tig0028229:36167-36186 | None:intergenic | 40.0% |
! | GCTAAGTGATTTTCATCCTC+TGG | - | tig0028229:36173-36192 | None:intergenic | 40.0% |
GATGGAAGTTCCATAGATGA+AGG | + | tig0028229:36194-36213 | Msa1437260:CDS | 40.0% | |
AGCTTGTGTCTACTACTAAC+TGG | + | tig0028229:36256-36275 | Msa1437260:intron | 40.0% | |
!! | GACACAAAAGCATTTAGCAG+GGG | - | tig0028229:36452-36471 | None:intergenic | 40.0% |
!! | GAGACACAAAAGCATTTAGC+AGG | - | tig0028229:36454-36473 | None:intergenic | 40.0% |
! | AATGCTTTTGTGTCTCTGCA+TGG | + | tig0028229:36458-36477 | Msa1437260:intron | 40.0% |
TTCGAACAAGATGCCTGTAA+TGG | - | tig0028229:36553-36572 | None:intergenic | 40.0% | |
GTTCGAAGAAGAAAAATGGC+GGG | + | tig0028229:36566-36585 | Msa1437260:CDS | 40.0% | |
!!! | GGTTTTAGAGTTTCCAGTTG+TGG | + | tig0028229:36626-36645 | Msa1437260:CDS | 40.0% |
! | GTCAGAGCATCCAAAAAAGA+TGG | + | tig0028229:36669-36688 | Msa1437260:CDS | 40.0% |
TGGTCAAACAATCTGCAAAG+CGG | + | tig0028229:36724-36743 | Msa1437260:CDS | 40.0% | |
TTGAGATGTACTTCGCAGAT+AGG | - | tig0028229:36792-36811 | None:intergenic | 40.0% | |
! | TACTGGTACACGTCTAAAAC+AGG | + | tig0028229:36858-36877 | Msa1437260:intron | 40.0% |
TATAAGCAATGGGGATAGTG+TGG | + | tig0028229:37001-37020 | Msa1437260:intron | 40.0% | |
TGCCGATCCAACAAAAGATT+GGG | + | tig0028229:37191-37210 | Msa1437260:CDS | 40.0% | |
GGAATTTCAGTTGAAGTGGA+AGG | - | tig0028229:37279-37298 | None:intergenic | 40.0% | |
TTGGATACAGAAAGCTGACT+TGG | - | tig0028229:37327-37346 | None:intergenic | 40.0% | |
AAGTCAGCTTTCTGTATCCA+AGG | + | tig0028229:37326-37345 | Msa1437260:CDS | 40.0% | |
CTGTATCCAAGGTTTGTACT+TGG | + | tig0028229:37337-37356 | Msa1437260:intron | 40.0% | |
ATGTCAATATAGAGATCGCG+CGG | + | tig0028229:37507-37526 | Msa1437260:CDS | 40.0% | |
GCTGAAAGAAGAATCTTGCA+TGG | + | tig0028229:37529-37548 | Msa1437260:CDS | 40.0% | |
GAAAGAAGAATCTTGCATGG+TGG | + | tig0028229:37532-37551 | Msa1437260:CDS | 40.0% | |
! | GAGGCGTTAAAGATGTCATT+TGG | + | tig0028229:37643-37662 | Msa1437260:CDS | 40.0% |
!! | AGATTTCTGGCATAACTACC+TGG | - | tig0028229:37670-37689 | None:intergenic | 40.0% |
! | CATGCCTTCTAGAAGATTTC+TGG | - | tig0028229:37683-37702 | None:intergenic | 40.0% |
! | CAGAAATCTTCTAGAAGGCA+TGG | + | tig0028229:37681-37700 | Msa1437260:CDS | 40.0% |
GCATAAAATATGCAAGGTCC+GGG | + | tig0028229:38081-38100 | Msa1437260:intron | 40.0% | |
CATAAAATATGCAAGGTCCG+GGG | + | tig0028229:38082-38101 | Msa1437260:intron | 40.0% | |
!! | CAAAACTGGCTTGTAAAGTG+GGG | + | tig0028229:38237-38256 | Msa1437260:intron | 40.0% |
AGAGTCCTATCTAACTGATG+TGG | + | tig0028229:38289-38308 | Msa1437260:intron | 40.0% | |
GAGTCCTATCTAACTGATGT+GGG | + | tig0028229:38290-38309 | Msa1437260:intron | 40.0% | |
TAGTCCCACATCAGTTAGAT+AGG | - | tig0028229:38297-38316 | None:intergenic | 40.0% | |
GCAACTCAAATGTCGCAATT+AGG | + | tig0028229:38331-38350 | Msa1437260:intron | 40.0% | |
GCAACTCAAATGTCGCAATT+AGG | + | tig0028229:38331-38350 | Msa1437260:intron | 40.0% | |
ATGTTTCCAACTGGCTGAAT+AGG | - | tig0028229:38716-38735 | None:intergenic | 40.0% | |
ATTCAGCCAGTTGGAAACAT+TGG | + | tig0028229:38716-38735 | Msa1437260:CDS | 40.0% | |
AAACACATGCTACATTGGTC+TGG | - | tig0028229:38821-38840 | None:intergenic | 40.0% | |
ATCACACTCCCCTAAATACA+CGG | + | tig0028229:38955-38974 | Msa1437260:three_prime_UTR | 40.0% | |
CTGGATTACCGTGTATTTAG+GGG | - | tig0028229:38966-38985 | None:intergenic | 40.0% | |
! | TGATTGTGCTATTGGTGTTC+GGG | + | tig0028229:38998-39017 | Msa1437260:three_prime_UTR | 40.0% |
GGACCCAGAACCTCAAATTT+CGG | + | tig0028229:34399-34418 | Msa1437260:CDS | 45.0% | |
ATCATGATCCTAATGCTGGC+TGG | + | tig0028229:34711-34730 | Msa1437260:CDS | 45.0% | |
CTATAGTACCAGCCAGCATT+AGG | - | tig0028229:34722-34741 | None:intergenic | 45.0% | |
TGGTACTATAGCACCAGTGA+TGG | + | tig0028229:34731-34750 | Msa1437260:CDS | 45.0% | |
TGGCCTTCTAAGCATCTGTT+TGG | + | tig0028229:34813-34832 | Msa1437260:intron | 45.0% | |
! | AACGACCCTTAGACCCTTTT+TGG | - | tig0028229:35036-35055 | None:intergenic | 45.0% |
AAAAGGGTCTAAGGGTCGTT+TGG | + | tig0028229:35036-35055 | Msa1437260:intron | 45.0% | |
GAGGATTGTTCTTCCTTCCT+CGG | + | tig0028229:35430-35449 | Msa1437260:CDS | 45.0% | |
AAAAGGATGTGGAAGGAAGG+AGG | - | tig0028229:35748-35767 | None:intergenic | 45.0% | |
!! | TATATCCATCGGTTTCCACG+GGG | - | tig0028229:35901-35920 | None:intergenic | 45.0% |
ATACTGAAATGGGAGGTGAC+TGG | + | tig0028229:36036-36055 | Msa1437260:CDS | 45.0% | |
!!! | GTCATGCCATTTTCATCTGC+TGG | - | tig0028229:36071-36090 | None:intergenic | 45.0% |
ATGCAATCTCACTCATGGTG+TGG | - | tig0028229:36501-36520 | None:intergenic | 45.0% | |
TAGGCATGCAATCTCACTCA+TGG | - | tig0028229:36506-36525 | None:intergenic | 45.0% | |
AGTTTCCAGTTGTGGACTTG+TGG | + | tig0028229:36634-36653 | Msa1437260:CDS | 45.0% | |
GTTTCCAGTTGTGGACTTGT+GGG | + | tig0028229:36635-36654 | Msa1437260:CDS | 45.0% | |
ATGGAAAAGATAGGGTGGCA+AGG | + | tig0028229:36688-36707 | Msa1437260:CDS | 45.0% | |
AAAAGATAGGGTGGCAAGGT+TGG | + | tig0028229:36692-36711 | Msa1437260:CDS | 45.0% | |
CTGCGAAGTACATCTCAATC+TGG | + | tig0028229:36794-36813 | Msa1437260:CDS | 45.0% | |
AATCTGGTACGCGTCAAAAC+AGG | + | tig0028229:36810-36829 | Msa1437260:CDS | 45.0% | |
AAACCCAAGTGCGAGATATG+TGG | + | tig0028229:37146-37165 | Msa1437260:CDS | 45.0% | |
AAGCCACATATCTCGCACTT+GGG | - | tig0028229:37152-37171 | None:intergenic | 45.0% | |
CTGCCGATCCAACAAAAGAT+TGG | + | tig0028229:37190-37209 | Msa1437260:CDS | 45.0% | |
GTGGGTAAATCTTTCGCTGT+AGG | - | tig0028229:37300-37319 | None:intergenic | 45.0% | |
AGAATCTTGCATGGTGGCTT+TGG | + | tig0028229:37538-37557 | Msa1437260:CDS | 45.0% | |
TCCAGAAGAAGCTACAGAAG+AGG | + | tig0028229:37624-37643 | Msa1437260:CDS | 45.0% | |
TGAGCTTAGCTCAGTTGGTT+GGG | + | tig0028229:38053-38072 | Msa1437260:intron | 45.0% | |
!! | ACATTTGAGTTGCCTCGTGT+TGG | - | tig0028229:38324-38343 | None:intergenic | 45.0% |
AATGTCGCAATTAGGCGACT+AGG | + | tig0028229:38339-38358 | Msa1437260:intron | 45.0% | |
ATGTCGCAATTAGGCGACTA+GGG | + | tig0028229:38340-38359 | Msa1437260:intron | 45.0% | |
AGGCGGAATTTCCAATGATG+TGG | + | tig0028229:38377-38396 | Msa1437260:intron | 45.0% | |
GGCGGAATTTCCAATGATGT+GGG | + | tig0028229:38378-38397 | Msa1437260:intron | 45.0% | |
! | GGCTTTTAGTCCCACATCAT+TGG | - | tig0028229:38391-38410 | None:intergenic | 45.0% |
!! | ACATTTGAGTTGCCTCGTGT+TGG | - | tig0028229:38324-38343 | None:intergenic | 45.0% |
AATGTCGCAATTAGGCGACT+AGG | + | tig0028229:38339-38358 | Msa1437260:intron | 45.0% | |
ATGTCGCAATTAGGCGACTA+GGG | + | tig0028229:38340-38359 | Msa1437260:intron | 45.0% | |
GGACTTGGCAGTTCAACAAA+AGG | + | tig0028229:38680-38699 | Msa1437260:CDS | 45.0% | |
TGGCAGTTCAACAAAAGGCT+TGG | + | tig0028229:38685-38704 | Msa1437260:CDS | 45.0% | |
CAGTTCAACAAAAGGCTTGG+TGG | + | tig0028229:38688-38707 | Msa1437260:CDS | 45.0% | |
! | TACATTGGTCTGGTGGTTGA+AGG | - | tig0028229:38811-38830 | None:intergenic | 45.0% |
!! | AAAATAATTAAATTATAGAA+TGG | - | tig0028229:38607-38626 | None:intergenic | 5.0% |
CGCAACTTTACTTTCACGCC+AGG | + | tig0028229:34458-34477 | Msa1437260:CDS | 50.0% | |
CTCACAAGTGCTTATGCCAG+TGG | - | tig0028229:34863-34882 | None:intergenic | 50.0% | |
GGTCTAAGGGTCGTTTGGAT+TGG | + | tig0028229:35041-35060 | Msa1437260:intron | 50.0% | |
CGGTCAAGGTTCCTATCTGT+TGG | - | tig0028229:35474-35493 | None:intergenic | 50.0% | |
ACAGATAGGAACCTTGACCG+AGG | + | tig0028229:35474-35493 | Msa1437260:CDS | 50.0% | |
TCCACGAACAGTCCAACTTG+TGG | + | tig0028229:35694-35713 | Msa1437260:CDS | 50.0% | |
! | TCCACAAGTTGGACTGTTCG+TGG | - | tig0028229:35698-35717 | None:intergenic | 50.0% |
GAAGGAGGATACCATTCCGA+CGG | - | tig0028229:35733-35752 | None:intergenic | 50.0% | |
! | ATTTTCATCTGCTGGGCCTG+TGG | - | tig0028229:36063-36082 | None:intergenic | 50.0% |
ACAGGCCCAGCAGATGAAAA+TGG | + | tig0028229:36062-36081 | Msa1437260:CDS | 50.0% | |
! | TGAGTGGATTCCAGATCCAG+AGG | + | tig0028229:36154-36173 | Msa1437260:CDS | 50.0% |
CCTTAGACTTGCGAGCAAAG+TGG | - | tig0028229:36225-36244 | None:intergenic | 50.0% | |
CCACTTTGCTCGCAAGTCTA+AGG | + | tig0028229:36222-36241 | Msa1437260:intron | 50.0% | |
!! | GAAAAATGGCGGGCTCAGTA+TGG | + | tig0028229:36576-36595 | Msa1437260:CDS | 50.0% |
AGTTGTGGACTTGTGGGACT+GGG | + | tig0028229:36641-36660 | Msa1437260:CDS | 50.0% | |
TGGGGATAGTGTGGCTTACA+TGG | + | tig0028229:37010-37029 | Msa1437260:intron | 50.0% | |
GAAGCCACATATCTCGCACT+TGG | - | tig0028229:37153-37172 | None:intergenic | 50.0% | |
!! | GAAAGCTGACTTGGCAACGT+GGG | - | tig0028229:37318-37337 | None:intergenic | 50.0% |
!! | AGAAAGCTGACTTGGCAACG+TGG | - | tig0028229:37319-37338 | None:intergenic | 50.0% |
AAGGGTGATCATGGGAGAAG+GGG | - | tig0028229:37403-37422 | None:intergenic | 50.0% | |
GAAGGGTGATCATGGGAGAA+GGG | - | tig0028229:37404-37423 | None:intergenic | 50.0% | |
TGAAGGGTGATCATGGGAGA+AGG | - | tig0028229:37405-37424 | None:intergenic | 50.0% | |
!! | TTGCATGGTGGCTTTGGTGT+TGG | + | tig0028229:37544-37563 | Msa1437260:CDS | 50.0% |
ACACCAAGATTCTTCTGCCC+TGG | - | tig0028229:37571-37590 | None:intergenic | 50.0% | |
! | GGGCAGAAGAATCTTGGTGT+CGG | + | tig0028229:37571-37590 | Msa1437260:CDS | 50.0% |
GCTTCTTCTGGACAAGCATC+AGG | - | tig0028229:37616-37635 | None:intergenic | 50.0% | |
GCCTCTTCTGTAGCTTCTTC+TGG | - | tig0028229:37628-37647 | None:intergenic | 50.0% | |
! | ATCTTCTAGAAGGCATGGGC+TGG | + | tig0028229:37686-37705 | Msa1437260:CDS | 50.0% |
! | GAGGTATGGACTGAGTTCTC+TGG | + | tig0028229:37712-37731 | Msa1437260:intron | 50.0% |
TGCATCAGGTCATCATCACC+AGG | + | tig0028229:37862-37881 | Msa1437260:intron | 50.0% | |
GCATCAGGTCATCATCACCA+GGG | + | tig0028229:37863-37882 | Msa1437260:intron | 50.0% | |
AAGCTCACGAGGACTGTACA+TGG | - | tig0028229:38040-38059 | None:intergenic | 50.0% | |
GTGAGCTTAGCTCAGTTGGT+TGG | + | tig0028229:38052-38071 | Msa1437260:intron | 50.0% | |
AGTGGGCAGAATTTGAACCC+CGG | - | tig0028229:38102-38121 | None:intergenic | 50.0% | |
TGGGACTAAAAGCCAACACG+AGG | + | tig0028229:38309-38328 | Msa1437260:intron | 50.0% | |
TGTCGCAATTAGGCGACTAG+GGG | + | tig0028229:38341-38360 | Msa1437260:intron | 50.0% | |
CTAGGGGCAGATCGCAATAA+AGG | + | tig0028229:38357-38376 | Msa1437260:intron | 50.0% | |
TGGGACTAAAAGCCAACACG+AGG | + | tig0028229:38309-38328 | Msa1437260:intron | 50.0% | |
TGTCGCAATTAGGCGACTAG+GGG | + | tig0028229:38341-38360 | Msa1437260:intron | 50.0% | |
CTAGGGGCAGATCGCAATAA+AGG | + | tig0028229:38357-38376 | Msa1437260:intron | 50.0% | |
AAGTCCTTCTCCCTGCACAA+GGG | - | tig0028229:38666-38685 | None:intergenic | 50.0% | |
GTGGAACCTATTCAGCCAGT+TGG | + | tig0028229:38707-38726 | Msa1437260:CDS | 50.0% | |
GCACTGCCAATGTTTCCAAC+TGG | - | tig0028229:38725-38744 | None:intergenic | 50.0% | |
GTTGGAAACATTGGCAGTGC+AGG | + | tig0028229:38725-38744 | Msa1437260:CDS | 50.0% | |
AAACATTGGCAGTGCAGGCT+TGG | + | tig0028229:38730-38749 | Msa1437260:CDS | 50.0% | |
AACATTGGCAGTGCAGGCTT+GGG | + | tig0028229:38731-38750 | Msa1437260:CDS | 50.0% | |
! | CACATGCTACATTGGTCTGG+TGG | - | tig0028229:38818-38837 | None:intergenic | 50.0% |
CAGCCACTTGCGTTAGATCT+CGG | + | tig0028229:38904-38923 | Msa1437260:three_prime_UTR | 50.0% | |
GAACCTTGACCGAGGAAGCA+GGG | + | tig0028229:35482-35501 | Msa1437260:CDS | 55.0% | |
AACCTTGACCGAGGAAGCAG+GGG | + | tig0028229:35483-35502 | Msa1437260:CDS | 55.0% | |
CTTACCATCCCCTGCTTCCT+CGG | - | tig0028229:35494-35513 | None:intergenic | 55.0% | |
GGTGGAGGGTTTCCACAAGT+TGG | - | tig0028229:35709-35728 | None:intergenic | 55.0% | |
TGATACAGTGACAGACCCCG+TGG | + | tig0028229:35883-35902 | Msa1437260:CDS | 55.0% | |
AGCATTTAGCAGGGGACTCG+AGG | - | tig0028229:36444-36463 | None:intergenic | 55.0% | |
CAGTCCCACAAGTCCACAAC+TGG | - | tig0028229:36642-36661 | None:intergenic | 55.0% | |
CAGTTGTGGACTTGTGGGAC+TGG | + | tig0028229:36640-36659 | Msa1437260:CDS | 55.0% | |
GGACTTGTGGGACTGGGAAA+TGG | + | tig0028229:36647-36666 | Msa1437260:CDS | 55.0% | |
! | GATAGGGTGGCAAGGTTGGT+TGG | + | tig0028229:36696-36715 | Msa1437260:CDS | 55.0% |
! | GGCAAGGTTGGTTGGAAGAC+TGG | + | tig0028229:36704-36723 | Msa1437260:CDS | 55.0% |
!! | GTGGCTTTGGTGTTGGTCCA+GGG | + | tig0028229:37551-37570 | Msa1437260:CDS | 55.0% |
GGTCCAGGGCAGAAGAATCT+TGG | + | tig0028229:37565-37584 | Msa1437260:CDS | 55.0% | |
!! | TCTAGAAGGCATGGGCTGGA+AGG | + | tig0028229:37690-37709 | Msa1437260:CDS | 55.0% |
TCAGGTCATCATCACCAGGG+CGG | + | tig0028229:37866-37885 | Msa1437260:intron | 55.0% | |
TATTATCACACACCCCGCCC+TGG | - | tig0028229:37883-37902 | None:intergenic | 55.0% | |
CCAACTGAGCTAAGCTCACG+AGG | - | tig0028229:38051-38070 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | + | tig0028229:38048-38067 | Msa1437260:intron | 55.0% | |
GGGGCAGATCGCAATAAAGG+CGG | + | tig0028229:38360-38379 | Msa1437260:intron | 55.0% | |
GGGGCAGATCGCAATAAAGG+CGG | + | tig0028229:38360-38379 | Msa1437260:intron | 55.0% | |
CAAGTCCTTCTCCCTGCACA+AGG | - | tig0028229:38667-38686 | None:intergenic | 55.0% | |
CTTGTGCAGGGAGAAGGACT+TGG | + | tig0028229:38665-38684 | Msa1437260:CDS | 55.0% | |
ACATTGGCAGTGCAGGCTTG+GGG | + | tig0028229:38732-38751 | Msa1437260:CDS | 55.0% | |
!! | GTCAGCCTTGTTCATCGACG+AGG | - | tig0028229:38761-38780 | None:intergenic | 55.0% |
CGAGATCTAACGCAAGTGGC+TGG | - | tig0028229:38906-38925 | None:intergenic | 55.0% | |
CCACCGAGATCTAACGCAAG+TGG | - | tig0028229:38910-38929 | None:intergenic | 55.0% | |
CCACTTGCGTTAGATCTCGG+TGG | + | tig0028229:38907-38926 | Msa1437260:three_prime_UTR | 55.0% | |
GGAACCTTGACCGAGGAAGC+AGG | + | tig0028229:35481-35500 | Msa1437260:CDS | 60.0% | |
ATCCCCTGCTTCCTCGGTCA+AGG | - | tig0028229:35488-35507 | None:intergenic | 60.0% | |
TTGACCGAGGAAGCAGGGGA+TGG | + | tig0028229:35487-35506 | Msa1437260:CDS | 60.0% | |
GGAGGATACCATTCCGACGG+CGG | - | tig0028229:35730-35749 | None:intergenic | 60.0% | |
ACAGACCCCGTGGAAACCGA+TGG | + | tig0028229:35893-35912 | Msa1437260:CDS | 60.0% | |
ATGGGAGGTGACTGGACCAC+AGG | + | tig0028229:36044-36063 | Msa1437260:CDS | 60.0% | |
!! | GGTGGCTTTGGTGTTGGTCC+AGG | + | tig0028229:37550-37569 | Msa1437260:CDS | 60.0% |
!! | AGAAGGCATGGGCTGGAAGG+AGG | + | tig0028229:37693-37712 | Msa1437260:CDS | 60.0% |
!! | GCATGGGCTGGAAGGAGGTA+TGG | + | tig0028229:37698-37717 | Msa1437260:intron | 60.0% |
CAGGTCATCATCACCAGGGC+GGG | + | tig0028229:37867-37886 | Msa1437260:intron | 60.0% | |
AGGTCATCATCACCAGGGCG+GGG | + | tig0028229:37868-37887 | Msa1437260:intron | 60.0% | |
TTCTGTTCCCGCCCTTGTGC+AGG | + | tig0028229:38652-38671 | Msa1437260:CDS | 60.0% | |
TCTGTTCCCGCCCTTGTGCA+GGG | + | tig0028229:38653-38672 | Msa1437260:CDS | 60.0% | |
TCCTTCTCCCTGCACAAGGG+CGG | - | tig0028229:38663-38682 | None:intergenic | 60.0% | |
GGTGGCCTCGTCGATGAACA+AGG | + | tig0028229:38753-38772 | Msa1437260:exon | 60.0% | |
ACGCAAGTGGCTGGTGCGTA+GGG | - | tig0028229:38897-38916 | None:intergenic | 60.0% | |
AACGCAAGTGGCTGGTGCGT+AGG | - | tig0028229:38898-38917 | None:intergenic | 60.0% | |
TGGAAACCCTCCACCGCCGT+CGG | + | tig0028229:35714-35733 | Msa1437260:CDS | 65.0% | |
ACCATTCCGACGGCGGTGGA+GGG | - | tig0028229:35723-35742 | None:intergenic | 65.0% | |
TACCATTCCGACGGCGGTGG+AGG | - | tig0028229:35724-35743 | None:intergenic | 65.0% | |
GGATACCATTCCGACGGCGG+TGG | - | tig0028229:35727-35746 | None:intergenic | 65.0% | |
CCTTCTCCCTGCACAAGGGC+GGG | - | tig0028229:38662-38681 | None:intergenic | 65.0% | |
TTGGCAGTGCAGGCTTGGGG+TGG | + | tig0028229:38735-38754 | Msa1437260:CDS | 65.0% | |
ACCCTCCACCGCCGTCGGAA+TGG | + | tig0028229:35719-35738 | Msa1437260:CDS | 70.0% | |
CCCGCCCTTGTGCAGGGAGA+AGG | + | tig0028229:38659-38678 | Msa1437260:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0028229 | gene | 34298 | 39045 | 34298 | ID=Msa1437260;Name=Msa1437260 |
tig0028229 | mRNA | 34298 | 39045 | 34298 | ID=Msa1437260-mRNA-1;Parent=Msa1437260;Name=Msa1437260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=99|0.77|0.8|1|1|1|10|276|499 |
tig0028229 | exon | 34298 | 34479 | 34298 | ID=Msa1437260-mRNA-1:exon:10564;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 34700 | 34754 | 34700 | ID=Msa1437260-mRNA-1:exon:10565;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 35349 | 35508 | 35349 | ID=Msa1437260-mRNA-1:exon:10566;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 35683 | 35740 | 35683 | ID=Msa1437260-mRNA-1:exon:10567;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 35820 | 35941 | 35820 | ID=Msa1437260-mRNA-1:exon:10568;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 36027 | 36215 | 36027 | ID=Msa1437260-mRNA-1:exon:10569;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 36559 | 36831 | 36559 | ID=Msa1437260-mRNA-1:exon:10570;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 37127 | 37347 | 37127 | ID=Msa1437260-mRNA-1:exon:10571;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 37499 | 37714 | 37499 | ID=Msa1437260-mRNA-1:exon:10572;Parent=Msa1437260-mRNA-1 |
tig0028229 | exon | 38647 | 39045 | 38647 | ID=Msa1437260-mRNA-1:exon:10573;Parent=Msa1437260-mRNA-1 |
tig0028229 | five_prime_UTR | 34298 | 34396 | 34298 | ID=Msa1437260-mRNA-1:five_prime_utr;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 34397 | 34479 | 34397 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 34700 | 34754 | 34700 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 35349 | 35508 | 35349 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 35683 | 35740 | 35683 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 35820 | 35941 | 35820 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 36027 | 36215 | 36027 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 36559 | 36831 | 36559 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 37127 | 37347 | 37127 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 37499 | 37714 | 37499 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | CDS | 38647 | 38769 | 38647 | ID=Msa1437260-mRNA-1:cds;Parent=Msa1437260-mRNA-1 |
tig0028229 | three_prime_UTR | 38770 | 39045 | 38770 | ID=Msa1437260-mRNA-1:three_prime_utr;Parent=Msa1437260-mRNA-1 |
Gene Sequence |
Protein sequence |