Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516390 | XP_003610817.1 | 84.112 | 107 | 17 | 0 | 4 | 110 | 216 | 322 | 2.83e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516390 | G7K556 | 84.112 | 107 | 17 | 0 | 4 | 110 | 216 | 322 | 1.35e-55 | 184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054730 | Msa0516390 | -0.803933 | 2.751850e-49 | -8.615850e-47 |
| Msa0376570 | Msa0516390 | 0.947505 | 5.909252e-106 | -8.615850e-47 |
| Msa0516390 | Msa0607050 | 0.800768 | 1.234202e-48 | -8.615850e-47 |
| Msa0516390 | Msa0661190 | -0.804910 | 1.722002e-49 | -8.615850e-47 |
| Msa0516390 | Msa0993290 | 0.806624 | 7.516251e-50 | -8.615850e-47 |
| Msa0516390 | Msa1084230 | 0.952704 | 1.361647e-110 | -8.615850e-47 |
| Msa0516390 | Msa1228590 | 0.811387 | 7.182157e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516390 | MtrunA17_Chr5g0395271 | 84.112 | 107 | 17 | 0 | 4 | 110 | 216 | 322 | 2.61e-59 | 184 |
| Msa0516390 | MtrunA17_Chr3g0126971 | 85.000 | 60 | 9 | 0 | 51 | 110 | 6 | 65 | 1.86e-31 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516390 | AT1G65020.1 | 61.458 | 96 | 37 | 0 | 4 | 99 | 213 | 308 | 1.03e-33 | 119 |
Find 86 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGAGTTCCTTGAATTTA+AGG | 0.162942 | 3_4:+67907421 | Msa0516390:CDS |
| GTCCAAACATGCTTGTCTTT+TGG | 0.226912 | 3_4:-67907508 | None:intergenic |
| TTCAAGAAAGGTTGTGTTTA+GGG | 0.236468 | 3_4:-67905055 | None:intergenic |
| TACAATGGTTAGAGATGTTT+TGG | 0.255930 | 3_4:-67904511 | None:intergenic |
| TACAATGGTTAGAGATGTTT+TGG | 0.255930 | 3_4:-67904731 | None:intergenic |
| CAGCTTAAACTTTCTGCTAT+TGG | 0.264619 | 3_4:-67908228 | None:intergenic |
| AATTGTTGAACATATCTTAA+AGG | 0.269795 | 3_4:+67905318 | Msa0516390:five_prime_UTR |
| CATTGAGGGATTGGGGTCTT+AGG | 0.272322 | 3_4:-67904581 | None:intergenic |
| CATTGAGGGATTGGGGTCTT+AGG | 0.272322 | 3_4:-67904801 | None:intergenic |
| TGAGACTCAACTACTCTAAA+AGG | 0.310066 | 3_4:+67905126 | Msa0516390:five_prime_UTR |
| CTTCAAGAAAGGTTGTGTTT+AGG | 0.331468 | 3_4:-67905056 | None:intergenic |
| TACAATGACATCTTTATTCA+TGG | 0.331604 | 3_4:-67905529 | None:intergenic |
| CCTCCTTGCCCTTAAATTCA+AGG | 0.332060 | 3_4:-67907430 | None:intergenic |
| TCAGCTATGGAAGGAGTAAA+TGG | 0.332499 | 3_4:-67905422 | None:intergenic |
| TATCAATGAAGTGGGCAGTT+AGG | 0.342841 | 3_4:+67904911 | Msa0516390:five_prime_UTR |
| ATCCAAAAGACAAGCATGTT+TGG | 0.358398 | 3_4:+67907506 | Msa0516390:CDS |
| AGCATATTAAAACTCATTGT+TGG | 0.361151 | 3_4:+67905347 | Msa0516390:five_prime_UTR |
| TTTAGAGTCATTGAGGGATT+GGG | 0.363471 | 3_4:-67904589 | None:intergenic |
| TTTAGAGTCATTGAGGGATT+GGG | 0.363471 | 3_4:-67904809 | None:intergenic |
| ATCAATGAAGTGGGCAGTTA+GGG | 0.365154 | 3_4:+67904912 | Msa0516390:five_prime_UTR |
| GGAGAGTTCCTTGAATTTAA+GGG | 0.377759 | 3_4:+67907422 | Msa0516390:CDS |
| AATGGCAACAATTATGTATT+GGG | 0.394383 | 3_4:+67907401 | Msa0516390:CDS |
| ACTCAAGTTGCAGCAGCTAC+TGG | 0.400992 | 3_4:-67905378 | None:intergenic |
| GAATGGCAACAATTATGTAT+TGG | 0.413328 | 3_4:+67907400 | Msa0516390:CDS |
| AACCATTGTAGCCACATCAT+TGG | 0.433510 | 3_4:+67904524 | Msa0516390:five_prime_UTR |
| AACCATTGTAGCCACATCAT+TGG | 0.433510 | 3_4:+67904744 | Msa0516390:five_prime_UTR |
| AGTAAATGGAGTTACAACTA+TGG | 0.434338 | 3_4:-67905408 | None:intergenic |
| CTAAACACAACCTTTCTTGA+AGG | 0.439583 | 3_4:+67905057 | Msa0516390:five_prime_UTR |
| TTTGAATACCCCTTCAAGAA+AGG | 0.454546 | 3_4:-67905067 | None:intergenic |
| ATTGTGTCACCCGTGTGGTT+TGG | 0.454713 | 3_4:+67904624 | Msa0516390:five_prime_UTR |
| ATTGTGTCACCCGTGTGGTT+TGG | 0.454713 | 3_4:+67904844 | Msa0516390:five_prime_UTR |
| CTCTGGTGCTGATACTAGCT+TGG | 0.465698 | 3_4:-67908147 | None:intergenic |
| ATAGATATAGATATAGATAT+CGG | 0.465826 | 3_4:+67908391 | Msa0516390:three_prime_UTR |
| TCTAAAGCTACTGATGAAAC+AGG | 0.469935 | 3_4:+67904483 | Msa0516390:five_prime_UTR |
| TCTAAAGCTACTGATGAAAC+AGG | 0.469935 | 3_4:+67904703 | Msa0516390:five_prime_UTR |
| TCACACAGATAGTCACCGTT+TGG | 0.474570 | 3_4:+67905472 | Msa0516390:five_prime_UTR |
| CTTGAAGGGGTATTCAAATG+AGG | 0.476544 | 3_4:+67905072 | Msa0516390:five_prime_UTR |
| AACCACACGGGTGACACAAT+AGG | 0.486470 | 3_4:-67904621 | None:intergenic |
| AACCACACGGGTGACACAAT+AGG | 0.486470 | 3_4:-67904841 | None:intergenic |
| TATTCAAATGAGGCTACAAA+TGG | 0.492792 | 3_4:+67905082 | Msa0516390:five_prime_UTR |
| ATTGGACGAAGCATTGTTAA+CGG | 0.496491 | 3_4:+67904542 | Msa0516390:five_prime_UTR |
| ATTGGACGAAGCATTGTTAA+CGG | 0.496491 | 3_4:+67904762 | Msa0516390:five_prime_UTR |
| GTTGCAGCAGCTACTGGAGC+AGG | 0.499389 | 3_4:-67905372 | None:intergenic |
| CTCTAAAAGGAAGTTTAGAA+AGG | 0.509865 | 3_4:+67905139 | Msa0516390:five_prime_UTR |
| CCTAAAAGCATCACCTTGCA+AGG | 0.515004 | 3_4:+67905185 | Msa0516390:five_prime_UTR |
| TAAACACAACCTTTCTTGAA+GGG | 0.523423 | 3_4:+67905058 | Msa0516390:five_prime_UTR |
| CTCTTAAAATCAGCTATGGA+AGG | 0.525843 | 3_4:-67905431 | None:intergenic |
| TCCCTTCAGTATCAATGAAG+TGG | 0.525870 | 3_4:+67904902 | Msa0516390:five_prime_UTR |
| ACAGTCACTTCTTTCCACTC+TGG | 0.526995 | 3_4:-67908164 | None:intergenic |
| GTTCCTTGAATTTAAGGGCA+AGG | 0.535185 | 3_4:+67907427 | Msa0516390:CDS |
| TTAGAGTCATTGAGGGATTG+GGG | 0.541307 | 3_4:-67904588 | None:intergenic |
| TTAGAGTCATTGAGGGATTG+GGG | 0.541307 | 3_4:-67904808 | None:intergenic |
| AAGTTACTCAACTGAAACGT+TGG | 0.541353 | 3_4:+67908283 | Msa0516390:exon |
| GCTTGCAGGTTGGAACTGAA+TGG | 0.543319 | 3_4:+67907383 | Msa0516390:intron |
| AAGACAAGCATGTTTGGACT+AGG | 0.550639 | 3_4:+67907512 | Msa0516390:CDS |
| CCCTTCAGTATCAATGAAGT+GGG | 0.551659 | 3_4:+67904903 | Msa0516390:five_prime_UTR |
| CATATCAGAAGATCAAAAGT+TGG | 0.551964 | 3_4:+67907473 | Msa0516390:CDS |
| GCCCACTTCATTGATACTGA+AGG | 0.572131 | 3_4:-67904904 | None:intergenic |
| TAGCATTCACTACCGACCGC+TGG | 0.579833 | 3_4:-67904963 | None:intergenic |
| AATGGAGTTACAACTATGGA+GGG | 0.583987 | 3_4:-67905404 | None:intergenic |
| GTCCAATGATGTGGCTACAA+TGG | 0.588721 | 3_4:-67904526 | None:intergenic |
| GTCCAATGATGTGGCTACAA+TGG | 0.588721 | 3_4:-67904746 | None:intergenic |
| AAACACAACCTTTCTTGAAG+GGG | 0.592722 | 3_4:+67905059 | Msa0516390:five_prime_UTR |
| TATAAAACTTGAAGCGTAGA+CGG | 0.594460 | 3_4:-67908104 | None:intergenic |
| TTATATGTATAATGCAAGCA+TGG | 0.595990 | 3_4:-67908360 | None:intergenic |
| CCCACTTCATTGATACTGAA+GGG | 0.608037 | 3_4:-67904903 | None:intergenic |
| CAATGCTTCGTCCAATGATG+TGG | 0.608816 | 3_4:-67904535 | None:intergenic |
| CAATGCTTCGTCCAATGATG+TGG | 0.608816 | 3_4:-67904755 | None:intergenic |
| AAATGGAGTTACAACTATGG+AGG | 0.610885 | 3_4:-67905405 | None:intergenic |
| GCAGCTGTTGCACCCTTGCA+AGG | 0.611569 | 3_4:-67905198 | None:intergenic |
| TACTATAGAAGTCCAGCGGT+CGG | 0.629469 | 3_4:+67904951 | Msa0516390:five_prime_UTR |
| CTAAAAGCATCACCTTGCAA+GGG | 0.630736 | 3_4:+67905186 | Msa0516390:five_prime_UTR |
| AGCTACTGATGAAACAGGTG+TGG | 0.636450 | 3_4:+67904488 | Msa0516390:five_prime_UTR |
| AGCTACTGATGAAACAGGTG+TGG | 0.636450 | 3_4:+67904708 | Msa0516390:five_prime_UTR |
| AGCTAGTATCAGCACCAGAG+TGG | 0.637281 | 3_4:+67908150 | Msa0516390:CDS |
| GGGCAAGGAGGAAGATGCTG+AGG | 0.637320 | 3_4:+67907442 | Msa0516390:CDS |
| TAGTTTAGTTCCAAACCACA+CGG | 0.642752 | 3_4:-67904634 | None:intergenic |
| TAGTTTAGTTCCAAACCACA+CGG | 0.642752 | 3_4:-67904854 | None:intergenic |
| AGTTTAGTTCCAAACCACAC+GGG | 0.660320 | 3_4:-67904633 | None:intergenic |
| AGTTTAGTTCCAAACCACAC+GGG | 0.660320 | 3_4:-67904853 | None:intergenic |
| TCAATGAAGTGGGCAGTTAG+GGG | 0.667038 | 3_4:+67904913 | Msa0516390:five_prime_UTR |
| CCTTGAATTTAAGGGCAAGG+AGG | 0.672592 | 3_4:+67907430 | Msa0516390:CDS |
| GACCTATTGTGTCACCCGTG+TGG | 0.681347 | 3_4:+67904619 | Msa0516390:five_prime_UTR |
| GACCTATTGTGTCACCCGTG+TGG | 0.681347 | 3_4:+67904839 | Msa0516390:five_prime_UTR |
| ATGGAGTTACAACTATGGAG+GGG | 0.726568 | 3_4:-67905403 | None:intergenic |
| AGTTTACTATAGAAGTCCAG+CGG | 0.728280 | 3_4:+67904947 | Msa0516390:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTAATACTAATCAA+TGG | + | chr3_4:67907663-67907682 | Msa0516390:intron | 10.0% |
| !! | TTTATTTAATACTAATCAAT+GGG | + | chr3_4:67907664-67907683 | Msa0516390:intron | 10.0% |
| !! | ATCTATTATATAACTTAAAA+AGG | - | chr3_4:67907858-67907877 | None:intergenic | 10.0% |
| !!! | TTACTACTATTTTCATAATT+TGG | - | chr3_4:67905604-67905623 | None:intergenic | 15.0% |
| !! | TACAAACACTAAAAAAAAAA+GGG | + | chr3_4:67905924-67905943 | Msa0516390:intron | 15.0% |
| !!! | AGAAGTTTTTAATATTGATA+AGG | + | chr3_4:67907001-67907020 | Msa0516390:intron | 15.0% |
| !! | TTATTATAGCTAAATACAAT+TGG | - | chr3_4:67907570-67907589 | None:intergenic | 15.0% |
| !! | CTATAATAACATTAGTTAAT+GGG | + | chr3_4:67907581-67907600 | Msa0516390:intron | 15.0% |
| !! | TATAATAACATTAGTTAATG+GGG | + | chr3_4:67907582-67907601 | Msa0516390:intron | 15.0% |
| !!! | AGTTAAAACTACAATTTTAT+AGG | - | chr3_4:67907965-67907984 | None:intergenic | 15.0% |
| !!! | AGTATGTTTTAATATGATTC+TGG | - | chr3_4:67905249-67905268 | None:intergenic | 20.0% |
| !! | AATTGTTGAACATATCTTAA+AGG | + | chr3_4:67905318-67905337 | Msa0516390:five_prime_UTR | 20.0% |
| !! | GTACAAACACTAAAAAAAAA+AGG | + | chr3_4:67905923-67905942 | Msa0516390:intron | 20.0% |
| !! | AAAAAAAGGGAAAAAAAAGT+TGG | + | chr3_4:67905937-67905956 | Msa0516390:intron | 20.0% |
| !!! | ATTTTTATTCTCTGTTTCAT+GGG | - | chr3_4:67906124-67906143 | None:intergenic | 20.0% |
| !!! | AATTTTTATTCTCTGTTTCA+TGG | - | chr3_4:67906125-67906144 | None:intergenic | 20.0% |
| !!! | GAAATTTTTTATCAGAAATC+AGG | + | chr3_4:67906317-67906336 | Msa0516390:intron | 20.0% |
| !! | TTTCTGTTCTTTCATAATTT+GGG | - | chr3_4:67907028-67907047 | None:intergenic | 20.0% |
| !!! | TTTTCTGTTCTTTCATAATT+TGG | - | chr3_4:67907029-67907048 | None:intergenic | 20.0% |
| !!! | TAGTATTATTGATTGCTAAA+AGG | + | chr3_4:67907050-67907069 | Msa0516390:intron | 20.0% |
| !! | TTATGAGAATGTAGAAAAAT+GGG | - | chr3_4:67907188-67907207 | None:intergenic | 20.0% |
| !! | GCTATAATAACATTAGTTAA+TGG | + | chr3_4:67907580-67907599 | Msa0516390:intron | 20.0% |
| !!! | AAAAGTTTTAGAGTCATTGA+GGG | - | chr3_4:67904598-67904617 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTTAGAGTCATTG+AGG | - | chr3_4:67904599-67904618 | None:intergenic | 25.0% |
| ! | CACAAGGGAAATATTAAAAA+AGG | - | chr3_4:67904671-67904690 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTAGAGTCATTGA+GGG | - | chr3_4:67904598-67904617 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTTAGAGTCATTG+AGG | - | chr3_4:67904599-67904618 | None:intergenic | 25.0% |
| ! | AGCATATTAAAACTCATTGT+TGG | + | chr3_4:67905347-67905366 | Msa0516390:five_prime_UTR | 25.0% |
| !! | TTTTCTCTTAAAATCAGCTA+TGG | - | chr3_4:67905438-67905457 | None:intergenic | 25.0% |
| !! | AGCAAAAATTTGTTTCCAAA+CGG | - | chr3_4:67905490-67905509 | None:intergenic | 25.0% |
| ! | TACAATGACATCTTTATTCA+TGG | - | chr3_4:67905532-67905551 | None:intergenic | 25.0% |
| ! | AATAAAGATGTCATTGTATG+TGG | + | chr3_4:67905534-67905553 | Msa0516390:intron | 25.0% |
| ! | TATGAAGTTGTTTGTTTGTA+TGG | - | chr3_4:67905809-67905828 | None:intergenic | 25.0% |
| !!! | TTTTTTTTAGTGTTTGTACG+TGG | - | chr3_4:67905922-67905941 | None:intergenic | 25.0% |
| !!! | ACTTGTTATAACTATGTCTT+AGG | - | chr3_4:67906066-67906085 | None:intergenic | 25.0% |
| !!! | AGAAATCAGGTTGTTTTTTA+GGG | + | chr3_4:67906330-67906349 | Msa0516390:intron | 25.0% |
| ! | AAACAATATCTGAACTGAAA+CGG | + | chr3_4:67906402-67906421 | Msa0516390:intron | 25.0% |
| !!! | TTGACAATACTTTTGTTTAG+CGG | + | chr3_4:67906719-67906738 | Msa0516390:intron | 25.0% |
| ! | TACTACCAATATTCAGAAAT+GGG | - | chr3_4:67906759-67906778 | None:intergenic | 25.0% |
| ! | TATATTTGTGACAGAATTAG+AGG | - | chr3_4:67906867-67906886 | None:intergenic | 25.0% |
| ! | GTTATGAGAATGTAGAAAAA+TGG | - | chr3_4:67907189-67907208 | None:intergenic | 25.0% |
| !! | GCTTAGATATTTTCCTATTT+CGG | + | chr3_4:67907240-67907259 | Msa0516390:intron | 25.0% |
| ! | TGTGAGTAAAAACTAAGATT+TGG | - | chr3_4:67907349-67907368 | None:intergenic | 25.0% |
| ! | AATGGCAACAATTATGTATT+GGG | + | chr3_4:67907401-67907420 | Msa0516390:CDS | 25.0% |
| !! | ATCAAGATCTGATTTGATTA+TGG | - | chr3_4:67907720-67907739 | None:intergenic | 25.0% |
| ! | ACTGATAATTACATGTTTGA+TGG | + | chr3_4:67907982-67908001 | Msa0516390:intron | 25.0% |
| !! | TATTTTGTATGTCAGAAAAG+GGG | - | chr3_4:67908335-67908354 | None:intergenic | 25.0% |
| !! | GTATTTTGTATGTCAGAAAA+GGG | - | chr3_4:67908336-67908355 | None:intergenic | 25.0% |
| !! | AGTATTTTGTATGTCAGAAA+AGG | - | chr3_4:67908337-67908356 | None:intergenic | 25.0% |
| ! | TTATATGTATAATGCAAGCA+TGG | - | chr3_4:67908363-67908382 | None:intergenic | 25.0% |
| ! | TACAATGGTTAGAGATGTTT+TGG | - | chr3_4:67904514-67904533 | None:intergenic | 30.0% |
| ! | TACAATGGTTAGAGATGTTT+TGG | - | chr3_4:67904514-67904533 | None:intergenic | 30.0% |
| CTGAAGGGAAATATCAAAAA+AGG | - | chr3_4:67904891-67904910 | None:intergenic | 30.0% | |
| TTCAAGAAAGGTTGTGTTTA+GGG | - | chr3_4:67905058-67905077 | None:intergenic | 30.0% | |
| TAAACACAACCTTTCTTGAA+GGG | + | chr3_4:67905058-67905077 | Msa0516390:five_prime_UTR | 30.0% | |
| TATTCAAATGAGGCTACAAA+TGG | + | chr3_4:67905082-67905101 | Msa0516390:five_prime_UTR | 30.0% | |
| ! | CTCTAAAAGGAAGTTTAGAA+AGG | + | chr3_4:67905139-67905158 | Msa0516390:five_prime_UTR | 30.0% |
| AGTAAATGGAGTTACAACTA+TGG | - | chr3_4:67905411-67905430 | None:intergenic | 30.0% | |
| !!! | TGGATCTAGAGAAGTATTTT+GGG | + | chr3_4:67905554-67905573 | Msa0516390:intron | 30.0% |
| ! | GATTGAATCTAGCTTATGTT+TGG | - | chr3_4:67905675-67905694 | None:intergenic | 30.0% |
| AAGCTAGATTCAATCTACAT+AGG | + | chr3_4:67905680-67905699 | Msa0516390:intron | 30.0% | |
| TGTTTGATCAAGTGTTCATT+AGG | - | chr3_4:67905724-67905743 | None:intergenic | 30.0% | |
| AATTCGAGAAATTAAACACC+AGG | + | chr3_4:67906141-67906160 | Msa0516390:intron | 30.0% | |
| !! | CTTTGGTTTGTGCTATAAAT+GGG | - | chr3_4:67906195-67906214 | None:intergenic | 30.0% |
| !! | ACTTTGGTTTGTGCTATAAA+TGG | - | chr3_4:67906196-67906215 | None:intergenic | 30.0% |
| ATCCAGTTTATGTGACAAAA+AGG | + | chr3_4:67906240-67906259 | Msa0516390:intron | 30.0% | |
| ! | TTCCTTTTTGTCACATAAAC+TGG | - | chr3_4:67906245-67906264 | None:intergenic | 30.0% |
| !!! | CAGAAATCAGGTTGTTTTTT+AGG | + | chr3_4:67906329-67906348 | Msa0516390:intron | 30.0% |
| !!! | TAAGTGGTTTTCTTGTTTTG+TGG | + | chr3_4:67906439-67906458 | Msa0516390:intron | 30.0% |
| !! | GCTAAACAAAAGTATTGTCA+AGG | - | chr3_4:67906720-67906739 | None:intergenic | 30.0% |
| ATCAACCCATTTCTGAATAT+TGG | + | chr3_4:67906751-67906770 | Msa0516390:intron | 30.0% | |
| CTACTACCAATATTCAGAAA+TGG | - | chr3_4:67906760-67906779 | None:intergenic | 30.0% | |
| ! | CATTTCTGAATATTGGTAGT+AGG | + | chr3_4:67906758-67906777 | Msa0516390:intron | 30.0% |
| ! | TGAATATTGGTAGTAGGATA+AGG | + | chr3_4:67906764-67906783 | Msa0516390:intron | 30.0% |
| ! | AGCAAACCGACTTATAATTT+GGG | - | chr3_4:67907091-67907110 | None:intergenic | 30.0% |
| ! | TAGCAAACCGACTTATAATT+TGG | - | chr3_4:67907092-67907111 | None:intergenic | 30.0% |
| GAGTAAAAACTAAGATTTGG+TGG | - | chr3_4:67907346-67907365 | None:intergenic | 30.0% | |
| GAATGGCAACAATTATGTAT+TGG | + | chr3_4:67907400-67907419 | Msa0516390:CDS | 30.0% | |
| CATATCAGAAGATCAAAAGT+TGG | + | chr3_4:67907473-67907492 | Msa0516390:CDS | 30.0% | |
| AATTCAACTCAACTTGAAGT+TGG | + | chr3_4:67907606-67907625 | Msa0516390:intron | 30.0% | |
| ATATTCTGTTCTAACCAGAA+TGG | - | chr3_4:67907743-67907762 | None:intergenic | 30.0% | |
| AATGTTCTCATTCTTCATCT+TGG | - | chr3_4:67907884-67907903 | None:intergenic | 30.0% | |
| GAAGATAAACCATTCAAGAA+GGG | + | chr3_4:67908004-67908023 | Msa0516390:intron | 30.0% | |
| TATAAAACTTGAAGCGTAGA+CGG | - | chr3_4:67908107-67908126 | None:intergenic | 30.0% | |
| ! | TCTAAAGCTACTGATGAAAC+AGG | + | chr3_4:67904483-67904502 | Msa0516390:five_prime_UTR | 35.0% |
| !! | ATTGGACGAAGCATTGTTAA+CGG | + | chr3_4:67904542-67904561 | Msa0516390:five_prime_UTR | 35.0% |
| ! | TTTAGAGTCATTGAGGGATT+GGG | - | chr3_4:67904592-67904611 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTCATTGAGGGAT+TGG | - | chr3_4:67904593-67904612 | None:intergenic | 35.0% |
| ! | TAGTTTAGTTCCAAACCACA+CGG | - | chr3_4:67904637-67904656 | None:intergenic | 35.0% |
| ! | TCTAAAGCTACTGATGAAAC+AGG | + | chr3_4:67904483-67904502 | Msa0516390:five_prime_UTR | 35.0% |
| !! | ATTGGACGAAGCATTGTTAA+CGG | + | chr3_4:67904542-67904561 | Msa0516390:five_prime_UTR | 35.0% |
| ! | TTTAGAGTCATTGAGGGATT+GGG | - | chr3_4:67904592-67904611 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTCATTGAGGGAT+TGG | - | chr3_4:67904593-67904612 | None:intergenic | 35.0% |
| ! | TAGTTTAGTTCCAAACCACA+CGG | - | chr3_4:67904637-67904656 | None:intergenic | 35.0% |
| AGTTTACTATAGAAGTCCAG+CGG | + | chr3_4:67904947-67904966 | Msa0516390:five_prime_UTR | 35.0% | |
| CTTCAAGAAAGGTTGTGTTT+AGG | - | chr3_4:67905059-67905078 | None:intergenic | 35.0% | |
| CTAAACACAACCTTTCTTGA+AGG | + | chr3_4:67905057-67905076 | Msa0516390:five_prime_UTR | 35.0% | |
| AAACACAACCTTTCTTGAAG+GGG | + | chr3_4:67905059-67905078 | Msa0516390:five_prime_UTR | 35.0% | |
| TTTGAATACCCCTTCAAGAA+AGG | - | chr3_4:67905070-67905089 | None:intergenic | 35.0% | |
| TGAGACTCAACTACTCTAAA+AGG | + | chr3_4:67905126-67905145 | Msa0516390:five_prime_UTR | 35.0% | |
| AATGGAGTTACAACTATGGA+GGG | - | chr3_4:67905407-67905426 | None:intergenic | 35.0% | |
| AAATGGAGTTACAACTATGG+AGG | - | chr3_4:67905408-67905427 | None:intergenic | 35.0% | |
| CTCTTAAAATCAGCTATGGA+AGG | - | chr3_4:67905434-67905453 | None:intergenic | 35.0% | |
| ! | AAACAAATTTTTGCTGCTGC+TGG | + | chr3_4:67905495-67905514 | Msa0516390:five_prime_UTR | 35.0% |
| !!! | GTGGATCTAGAGAAGTATTT+TGG | + | chr3_4:67905553-67905572 | Msa0516390:intron | 35.0% |
| ATAGGACTAAACCACATTGA+AGG | + | chr3_4:67905698-67905717 | Msa0516390:intron | 35.0% | |
| ! | TTGGACACTTGTAAGTTTTG+TGG | - | chr3_4:67905864-67905883 | None:intergenic | 35.0% |
| GTACGTGGTTTGATAAAAGA+TGG | - | chr3_4:67905907-67905926 | None:intergenic | 35.0% | |
| ACATGCTGCAGAAGAAAATA+AGG | + | chr3_4:67906294-67906313 | Msa0516390:intron | 35.0% | |
| CATGCTGCAGAAGAAAATAA+GGG | + | chr3_4:67906295-67906314 | Msa0516390:intron | 35.0% | |
| !!! | TCAGGTTGTTTTTTAGGGTT+TGG | + | chr3_4:67906335-67906354 | Msa0516390:intron | 35.0% |
| !! | TTGTTTTGTGGAGTTGTGTT+TGG | + | chr3_4:67906451-67906470 | Msa0516390:intron | 35.0% |
| ! | TGTTTTGTGGAGTTGTGTTT+GGG | + | chr3_4:67906452-67906471 | Msa0516390:intron | 35.0% |
| TGAACATTGTTGGACATCAA+TGG | - | chr3_4:67906576-67906595 | None:intergenic | 35.0% | |
| TGTCCAACAATGTTCATACA+TGG | + | chr3_4:67906580-67906599 | Msa0516390:intron | 35.0% | |
| GTCCAACAATGTTCATACAT+GGG | + | chr3_4:67906581-67906600 | Msa0516390:intron | 35.0% | |
| AACCCATGTATGAACATTGT+TGG | - | chr3_4:67906586-67906605 | None:intergenic | 35.0% | |
| !! | ACAATACTTTTGTTTAGCGG+AGG | + | chr3_4:67906722-67906741 | Msa0516390:intron | 35.0% |
| !! | ATAGAGTTCTGGGATTGAAT+TGG | - | chr3_4:67906811-67906830 | None:intergenic | 35.0% |
| TTCAATCCCAGAACTCTATT+TGG | + | chr3_4:67906812-67906831 | Msa0516390:intron | 35.0% | |
| CTCCATCCCAAATTATAAGT+CGG | + | chr3_4:67907082-67907101 | Msa0516390:intron | 35.0% | |
| ! | AACCGACTTATAATTTGGGA+TGG | - | chr3_4:67907087-67907106 | None:intergenic | 35.0% |
| !! | TTATAAGTCGGTTTGCTAGA+AGG | + | chr3_4:67907094-67907113 | Msa0516390:intron | 35.0% |
| AACAAAGTCTGTGACACAAT+GGG | - | chr3_4:67907136-67907155 | None:intergenic | 35.0% | |
| GAGAATGTAGAAAAATGGGT+GGG | - | chr3_4:67907184-67907203 | None:intergenic | 35.0% | |
| TGAGAATGTAGAAAAATGGG+TGG | - | chr3_4:67907185-67907204 | None:intergenic | 35.0% | |
| TACTCACAGAACAGATTGTT+TGG | + | chr3_4:67907361-67907380 | Msa0516390:intron | 35.0% | |
| GGAGAGTTCCTTGAATTTAA+GGG | + | chr3_4:67907422-67907441 | Msa0516390:CDS | 35.0% | |
| ATCCAAAAGACAAGCATGTT+TGG | + | chr3_4:67907506-67907525 | Msa0516390:CDS | 35.0% | |
| CTTGAAGTTGGAACAAAGAA+TGG | + | chr3_4:67907618-67907637 | Msa0516390:intron | 35.0% | |
| TACAACCAAATCCCTTGATT+AGG | + | chr3_4:67907687-67907706 | Msa0516390:intron | 35.0% | |
| ACAACCAAATCCCTTGATTA+GGG | + | chr3_4:67907688-67907707 | Msa0516390:intron | 35.0% | |
| AATCAGATCTTGATCCATTC+TGG | + | chr3_4:67907726-67907745 | Msa0516390:intron | 35.0% | |
| AGAATGAGAACATTCCACAT+TGG | + | chr3_4:67907890-67907909 | Msa0516390:intron | 35.0% | |
| GGAAGATAAACCATTCAAGA+AGG | + | chr3_4:67908003-67908022 | Msa0516390:intron | 35.0% | |
| ATAAACCATTCAAGAAGGGA+AGG | + | chr3_4:67908008-67908027 | Msa0516390:intron | 35.0% | |
| CAGCTTAAACTTTCTGCTAT+TGG | - | chr3_4:67908231-67908250 | None:intergenic | 35.0% | |
| AAGTTACTCAACTGAAACGT+TGG | + | chr3_4:67908283-67908302 | Msa0516390:exon | 35.0% | |
| AACCATTGTAGCCACATCAT+TGG | + | chr3_4:67904524-67904543 | Msa0516390:five_prime_UTR | 40.0% | |
| TTAGAGTCATTGAGGGATTG+GGG | - | chr3_4:67904591-67904610 | None:intergenic | 40.0% | |
| ! | AGTTTAGTTCCAAACCACAC+GGG | - | chr3_4:67904636-67904655 | None:intergenic | 40.0% |
| !!! | AGAGAGCATTTTCAGCACAA+GGG | - | chr3_4:67904466-67904485 | None:intergenic | 40.0% |
| !!! | TAGAGAGCATTTTCAGCACA+AGG | - | chr3_4:67904467-67904486 | None:intergenic | 40.0% |
| AACCATTGTAGCCACATCAT+TGG | + | chr3_4:67904524-67904543 | Msa0516390:five_prime_UTR | 40.0% | |
| TTAGAGTCATTGAGGGATTG+GGG | - | chr3_4:67904591-67904610 | None:intergenic | 40.0% | |
| ! | AGTTTAGTTCCAAACCACAC+GGG | - | chr3_4:67904636-67904655 | None:intergenic | 40.0% |
| TCCCTTCAGTATCAATGAAG+TGG | + | chr3_4:67904902-67904921 | Msa0516390:five_prime_UTR | 40.0% | |
| CCCACTTCATTGATACTGAA+GGG | - | chr3_4:67904906-67904925 | None:intergenic | 40.0% | |
| CCCTTCAGTATCAATGAAGT+GGG | + | chr3_4:67904903-67904922 | Msa0516390:five_prime_UTR | 40.0% | |
| TATCAATGAAGTGGGCAGTT+AGG | + | chr3_4:67904911-67904930 | Msa0516390:five_prime_UTR | 40.0% | |
| ATCAATGAAGTGGGCAGTTA+GGG | + | chr3_4:67904912-67904931 | Msa0516390:five_prime_UTR | 40.0% | |
| !! | CTTGAAGGGGTATTCAAATG+AGG | + | chr3_4:67905072-67905091 | Msa0516390:five_prime_UTR | 40.0% |
| !! | CTAAAAGCATCACCTTGCAA+GGG | + | chr3_4:67905186-67905205 | Msa0516390:five_prime_UTR | 40.0% |
| ATGGAGTTACAACTATGGAG+GGG | - | chr3_4:67905406-67905425 | None:intergenic | 40.0% | |
| TCAGCTATGGAAGGAGTAAA+TGG | - | chr3_4:67905425-67905444 | None:intergenic | 40.0% | |
| TGTTCATTAGGCCTTCAATG+TGG | - | chr3_4:67905712-67905731 | None:intergenic | 40.0% | |
| GTATGGCGTGTTCATATCTA+TGG | - | chr3_4:67905792-67905811 | None:intergenic | 40.0% | |
| TAAAAGATGGAGGCAGAAAC+CGG | - | chr3_4:67905894-67905913 | None:intergenic | 40.0% | |
| CGTGGTTTGATAAAAGATGG+AGG | - | chr3_4:67905904-67905923 | None:intergenic | 40.0% | |
| AACAAAACCCTAACCTTCAG+TGG | + | chr3_4:67906006-67906025 | Msa0516390:intron | 40.0% | |
| ACAAAACCCTAACCTTCAGT+GGG | + | chr3_4:67906007-67906026 | Msa0516390:intron | 40.0% | |
| TTAAACACCAGGTGACGAAA+TGG | + | chr3_4:67906152-67906171 | Msa0516390:intron | 40.0% | |
| TAAACACCAGGTGACGAAAT+GGG | + | chr3_4:67906153-67906172 | Msa0516390:intron | 40.0% | |
| !! | CAAACCAAAGTTTTAGCAGC+AGG | + | chr3_4:67906205-67906224 | Msa0516390:intron | 40.0% |
| CTTTCCTGCTGCTAAAACTT+TGG | - | chr3_4:67906212-67906231 | None:intergenic | 40.0% | |
| TGACAAAAAGGAACCGAAAG+AGG | + | chr3_4:67906252-67906271 | Msa0516390:intron | 40.0% | |
| CAAAAACCATGGTCCTCTTT+CGG | - | chr3_4:67906268-67906287 | None:intergenic | 40.0% | |
| CATGTTCGATCCAAAAACCA+TGG | - | chr3_4:67906279-67906298 | None:intergenic | 40.0% | |
| ACCTGCTATCCAAGTTAAGA+AGG | - | chr3_4:67906484-67906503 | None:intergenic | 40.0% | |
| ACCGCTGCTATACTAGTATT+GGG | - | chr3_4:67906509-67906528 | None:intergenic | 40.0% | |
| AACCGCTGCTATACTAGTAT+TGG | - | chr3_4:67906510-67906529 | None:intergenic | 40.0% | |
| CATTGTTGGACATCAATGGA+CGG | - | chr3_4:67906572-67906591 | None:intergenic | 40.0% | |
| CAGGACTGAAATGTGTTAAC+TGG | - | chr3_4:67906680-67906699 | None:intergenic | 40.0% | |
| ! | TCAAGGCACCATTAATAGCA+GGG | - | chr3_4:67906703-67906722 | None:intergenic | 40.0% |
| CCTTCTCCAAATAGAGTTCT+GGG | - | chr3_4:67906821-67906840 | None:intergenic | 40.0% | |
| CCAACTCAGTCAAACAGAAT+TGG | - | chr3_4:67906923-67906942 | None:intergenic | 40.0% | |
| CCAATTCTGTTTGACTGAGT+TGG | + | chr3_4:67906920-67906939 | Msa0516390:intron | 40.0% | |
| ! | TGTTTGACTGAGTTGGCAAA+AGG | + | chr3_4:67906927-67906946 | Msa0516390:intron | 40.0% |
| !!! | AGTTGGCAAAAGGAGCATTT+TGG | + | chr3_4:67906937-67906956 | Msa0516390:intron | 40.0% |
| !!! | GTTGGCAAAAGGAGCATTTT+GGG | + | chr3_4:67906938-67906957 | Msa0516390:intron | 40.0% |
| !!! | TTGGCAAAAGGAGCATTTTG+GGG | + | chr3_4:67906939-67906958 | Msa0516390:intron | 40.0% |
| ! | CGACTTATAATTTGGGATGG+AGG | - | chr3_4:67907084-67907103 | None:intergenic | 40.0% |
| ACAAAGTCTGTGACACAATG+GGG | - | chr3_4:67907135-67907154 | None:intergenic | 40.0% | |
| GAACAAAGTCTGTGACACAA+TGG | - | chr3_4:67907137-67907156 | None:intergenic | 40.0% | |
| AACATCGCTCCCTACATAAT+AGG | + | chr3_4:67907206-67907225 | Msa0516390:intron | 40.0% | |
| TTGCCCAAGCCTATTATGTA+GGG | - | chr3_4:67907218-67907237 | None:intergenic | 40.0% | |
| ! | CCAAGAGTACACTAATCCAA+AGG | - | chr3_4:67907300-67907319 | None:intergenic | 40.0% |
| !! | CCTTTGGATTAGTGTACTCT+TGG | + | chr3_4:67907297-67907316 | Msa0516390:intron | 40.0% |
| GGGAGAGTTCCTTGAATTTA+AGG | + | chr3_4:67907421-67907440 | Msa0516390:CDS | 40.0% | |
| GTTCCTTGAATTTAAGGGCA+AGG | + | chr3_4:67907427-67907446 | Msa0516390:CDS | 40.0% | |
| ! | GTCCAAACATGCTTGTCTTT+TGG | - | chr3_4:67907511-67907530 | None:intergenic | 40.0% |
| AAGACAAGCATGTTTGGACT+AGG | + | chr3_4:67907512-67907531 | Msa0516390:CDS | 40.0% | |
| CAACCAAATCCCTTGATTAG+GGG | + | chr3_4:67907689-67907708 | Msa0516390:intron | 40.0% | |
| !! | ATGGTTTTGCCCCTAATCAA+GGG | - | chr3_4:67907701-67907720 | None:intergenic | 40.0% |
| !! | TATGGTTTTGCCCCTAATCA+AGG | - | chr3_4:67907702-67907721 | None:intergenic | 40.0% |
| !! | AACATTCCACATTGGCTCTA+CGG | + | chr3_4:67907898-67907917 | Msa0516390:intron | 40.0% |
| AGAAACCTTCCCTTCTTGAA+TGG | - | chr3_4:67908016-67908035 | None:intergenic | 40.0% | |
| AGCTACTGATGAAACAGGTG+TGG | + | chr3_4:67904488-67904507 | Msa0516390:five_prime_UTR | 45.0% | |
| GTCCAATGATGTGGCTACAA+TGG | - | chr3_4:67904529-67904548 | None:intergenic | 45.0% | |
| CAATGCTTCGTCCAATGATG+TGG | - | chr3_4:67904538-67904557 | None:intergenic | 45.0% | |
| AGCTACTGATGAAACAGGTG+TGG | + | chr3_4:67904488-67904507 | Msa0516390:five_prime_UTR | 45.0% | |
| GTCCAATGATGTGGCTACAA+TGG | - | chr3_4:67904529-67904548 | None:intergenic | 45.0% | |
| CAATGCTTCGTCCAATGATG+TGG | - | chr3_4:67904538-67904557 | None:intergenic | 45.0% | |
| GCCCACTTCATTGATACTGA+AGG | - | chr3_4:67904907-67904926 | None:intergenic | 45.0% | |
| TCAATGAAGTGGGCAGTTAG+GGG | + | chr3_4:67904913-67904932 | Msa0516390:five_prime_UTR | 45.0% | |
| TACTATAGAAGTCCAGCGGT+CGG | + | chr3_4:67904951-67904970 | Msa0516390:five_prime_UTR | 45.0% | |
| !! | GCAAGGTGATGCTTTTAGGA+AGG | - | chr3_4:67905184-67905203 | None:intergenic | 45.0% |
| ! | CCTTGCAAGGTGATGCTTTT+AGG | - | chr3_4:67905188-67905207 | None:intergenic | 45.0% |
| !! | CCTAAAAGCATCACCTTGCA+AGG | + | chr3_4:67905185-67905204 | Msa0516390:five_prime_UTR | 45.0% |
| TCACACAGATAGTCACCGTT+TGG | + | chr3_4:67905472-67905491 | Msa0516390:five_prime_UTR | 45.0% | |
| ACAAGTGTCCAAAGCTTCTC+CGG | + | chr3_4:67905872-67905891 | Msa0516390:intron | 45.0% | |
| TCAACACCCACTGAAGGTTA+GGG | - | chr3_4:67906016-67906035 | None:intergenic | 45.0% | |
| TTCAACACCCACTGAAGGTT+AGG | - | chr3_4:67906017-67906036 | None:intergenic | 45.0% | |
| AACTGTTCAACACCCACTGA+AGG | - | chr3_4:67906022-67906041 | None:intergenic | 45.0% | |
| ! | CGAAAGAGGACCATGGTTTT+TGG | + | chr3_4:67906266-67906285 | Msa0516390:intron | 45.0% |
| GTTCTTACGCTTCAGATCTG+AGG | - | chr3_4:67906375-67906394 | None:intergenic | 45.0% | |
| ! | GCCTTCTTAACTTGGATAGC+AGG | + | chr3_4:67906480-67906499 | Msa0516390:intron | 45.0% |
| GCCCAATACTAGTATAGCAG+CGG | + | chr3_4:67906505-67906524 | Msa0516390:intron | 45.0% | |
| AGTATAGCAGCGGTTTGAGT+CGG | + | chr3_4:67906515-67906534 | Msa0516390:intron | 45.0% | |
| ! | CATGGGTTACCTGAGTAAGT+CGG | + | chr3_4:67906598-67906617 | Msa0516390:intron | 45.0% |
| ! | ACGGATAAACCGACTTACTC+AGG | - | chr3_4:67906610-67906629 | None:intergenic | 45.0% |
| !! | TTATCCGTTTTAACCGACCG+CGG | + | chr3_4:67906622-67906641 | Msa0516390:intron | 45.0% |
| ATGTGTTAACTGGCCCAATC+CGG | - | chr3_4:67906670-67906689 | None:intergenic | 45.0% | |
| ! | GTCAAGGCACCATTAATAGC+AGG | - | chr3_4:67906704-67906723 | None:intergenic | 45.0% |
| CCCAGAACTCTATTTGGAGA+AGG | + | chr3_4:67906818-67906837 | Msa0516390:intron | 45.0% | |
| GCCTTCTCCAAATAGAGTTC+TGG | - | chr3_4:67906822-67906841 | None:intergenic | 45.0% | |
| CACAGAGTTCAACTCAGTCA+GGG | - | chr3_4:67906896-67906915 | None:intergenic | 45.0% | |
| ACACAGAGTTCAACTCAGTC+AGG | - | chr3_4:67906897-67906916 | None:intergenic | 45.0% | |
| GCTCCCTACATAATAGGCTT+GGG | + | chr3_4:67907212-67907231 | Msa0516390:intron | 45.0% | |
| GTTGCCCAAGCCTATTATGT+AGG | - | chr3_4:67907219-67907238 | None:intergenic | 45.0% | |
| AAGCACATCTGTTAGGACCT+GGG | - | chr3_4:67907276-67907295 | None:intergenic | 45.0% | |
| CAAAGGCAAGCACATCTGTT+AGG | - | chr3_4:67907283-67907302 | None:intergenic | 45.0% | |
| CTAACAGATGTGCTTGCCTT+TGG | + | chr3_4:67907281-67907300 | Msa0516390:intron | 45.0% | |
| !! | GTGTACTCTTGGAGCATTGT+TGG | + | chr3_4:67907308-67907327 | Msa0516390:intron | 45.0% |
| !! | GAACAGATTGTTTGGCTTGC+AGG | + | chr3_4:67907369-67907388 | Msa0516390:intron | 45.0% |
| !! | AGATTGTTTGGCTTGCAGGT+TGG | + | chr3_4:67907373-67907392 | Msa0516390:intron | 45.0% |
| CCTCCTTGCCCTTAAATTCA+AGG | - | chr3_4:67907433-67907452 | None:intergenic | 45.0% | |
| CCTTGAATTTAAGGGCAAGG+AGG | + | chr3_4:67907430-67907449 | Msa0516390:CDS | 45.0% | |
| TTGCCCCTAATCAAGGGATT+TGG | - | chr3_4:67907695-67907714 | None:intergenic | 45.0% | |
| ACAGTCACTTCTTTCCACTC+TGG | - | chr3_4:67908167-67908186 | None:intergenic | 45.0% | |
| CATTGAGGGATTGGGGTCTT+AGG | - | chr3_4:67904584-67904603 | None:intergenic | 50.0% | |
| AACCACACGGGTGACACAAT+AGG | - | chr3_4:67904624-67904643 | None:intergenic | 50.0% | |
| ATTGTGTCACCCGTGTGGTT+TGG | + | chr3_4:67904624-67904643 | Msa0516390:five_prime_UTR | 50.0% | |
| CATTGAGGGATTGGGGTCTT+AGG | - | chr3_4:67904584-67904603 | None:intergenic | 50.0% | |
| AACCACACGGGTGACACAAT+AGG | - | chr3_4:67904624-67904643 | None:intergenic | 50.0% | |
| ATTGTGTCACCCGTGTGGTT+TGG | + | chr3_4:67904624-67904643 | Msa0516390:five_prime_UTR | 50.0% | |
| ! | ACTCAAGTTGCAGCAGCTAC+TGG | - | chr3_4:67905381-67905400 | None:intergenic | 50.0% |
| TCGTTTCCCATTTCGTCACC+TGG | - | chr3_4:67906162-67906181 | None:intergenic | 50.0% | |
| AAGGAACCGAAAGAGGACCA+TGG | + | chr3_4:67906259-67906278 | Msa0516390:intron | 50.0% | |
| ATCTGAACTGAAACGGCGCT+AGG | + | chr3_4:67906409-67906428 | Msa0516390:intron | 50.0% | |
| TCTGAACTGAAACGGCGCTA+GGG | + | chr3_4:67906410-67906429 | Msa0516390:intron | 50.0% | |
| TGTGGAGTTGTGTTTGGGCT+TGG | + | chr3_4:67906457-67906476 | Msa0516390:intron | 50.0% | |
| GTGGAGTTGTGTTTGGGCTT+GGG | + | chr3_4:67906458-67906477 | Msa0516390:intron | 50.0% | |
| TGGACATCAATGGACGGATG+CGG | - | chr3_4:67906566-67906585 | None:intergenic | 50.0% | |
| !! | TATCCGTTTTAACCGACCGC+GGG | + | chr3_4:67906623-67906642 | Msa0516390:intron | 50.0% |
| TAACCCGCGGTCGGTTAAAA+CGG | - | chr3_4:67906629-67906648 | None:intergenic | 50.0% | |
| CAGTCCTGCCCTGCTATTAA+TGG | + | chr3_4:67906692-67906711 | Msa0516390:intron | 50.0% | |
| CTCTATTTGGAGAAGGCTCG+AGG | + | chr3_4:67906825-67906844 | Msa0516390:intron | 50.0% | |
| AGTCTGTGACACAATGGGGA+GGG | - | chr3_4:67907131-67907150 | None:intergenic | 50.0% | |
| AAGTCTGTGACACAATGGGG+AGG | - | chr3_4:67907132-67907151 | None:intergenic | 50.0% | |
| CGCTCCCTACATAATAGGCT+TGG | + | chr3_4:67907211-67907230 | Msa0516390:intron | 50.0% | |
| CAAGCACATCTGTTAGGACC+TGG | - | chr3_4:67907277-67907296 | None:intergenic | 50.0% | |
| ! | GCTTGCAGGTTGGAACTGAA+TGG | + | chr3_4:67907383-67907402 | Msa0516390:intron | 50.0% |
| ACTTGTCCGTAGAGCCAATG+TGG | - | chr3_4:67907907-67907926 | None:intergenic | 50.0% | |
| !! | CTCTGGTGCTGATACTAGCT+TGG | - | chr3_4:67908150-67908169 | None:intergenic | 50.0% |
| AGCTAGTATCAGCACCAGAG+TGG | + | chr3_4:67908150-67908169 | Msa0516390:CDS | 50.0% | |
| GACCTATTGTGTCACCCGTG+TGG | + | chr3_4:67904619-67904638 | Msa0516390:five_prime_UTR | 55.0% | |
| GACCTATTGTGTCACCCGTG+TGG | + | chr3_4:67904619-67904638 | Msa0516390:five_prime_UTR | 55.0% | |
| TAGCATTCACTACCGACCGC+TGG | - | chr3_4:67904966-67904985 | None:intergenic | 55.0% | |
| GGCAGAAACCGGAGAAGCTT+TGG | - | chr3_4:67905883-67905902 | None:intergenic | 55.0% | |
| GGCGCTAGGGTTTCACTAAG+TGG | + | chr3_4:67906423-67906442 | Msa0516390:intron | 55.0% | |
| GGGCTTGGGCCTTCTTAACT+TGG | + | chr3_4:67906472-67906491 | Msa0516390:intron | 55.0% | |
| !! | CGGTTTGAGTCGGTTTTCGC+TGG | + | chr3_4:67906525-67906544 | Msa0516390:intron | 55.0% |
| AATGGACGGATGCGGATGGT+GGG | - | chr3_4:67906558-67906577 | None:intergenic | 55.0% | |
| CATCAATGGACGGATGCGGA+TGG | - | chr3_4:67906562-67906581 | None:intergenic | 55.0% | |
| ! | TTAACCGACCGCGGGTTAAC+AGG | + | chr3_4:67906631-67906650 | Msa0516390:intron | 55.0% |
| GGTTAACAGGCCTTCCAGGT+CGG | + | chr3_4:67906644-67906663 | Msa0516390:intron | 55.0% | |
| GGCACCATTAATAGCAGGGC+AGG | - | chr3_4:67906699-67906718 | None:intergenic | 55.0% | |
| GTTAGGACCTGGGTGAGTGT+GGG | - | chr3_4:67907266-67907285 | None:intergenic | 55.0% | |
| TGTTAGGACCTGGGTGAGTG+TGG | - | chr3_4:67907267-67907286 | None:intergenic | 55.0% | |
| GCAGCTGTTGCACCCTTGCA+AGG | - | chr3_4:67905201-67905220 | None:intergenic | 60.0% | |
| GTTGCAGCAGCTACTGGAGC+AGG | - | chr3_4:67905375-67905394 | None:intergenic | 60.0% | |
| !! | CGGATGCGGATGGTGGGAAA+TGG | - | chr3_4:67906552-67906571 | None:intergenic | 60.0% |
| CAATGGACGGATGCGGATGG+TGG | - | chr3_4:67906559-67906578 | None:intergenic | 60.0% | |
| AAGGCCTGTTAACCCGCGGT+CGG | - | chr3_4:67906638-67906657 | None:intergenic | 60.0% | |
| CTGGAAGGCCTGTTAACCCG+CGG | - | chr3_4:67906642-67906661 | None:intergenic | 60.0% | |
| CTGTGACACAATGGGGAGGG+AGG | - | chr3_4:67907128-67907147 | None:intergenic | 60.0% | |
| GGGTGAGTGTGGGCCGAAAT+AGG | - | chr3_4:67907256-67907275 | None:intergenic | 60.0% | |
| ATTTCGGCCCACACTCACCC+AGG | + | chr3_4:67907256-67907275 | Msa0516390:intron | 60.0% | |
| GGGCAAGGAGGAAGATGCTG+AGG | + | chr3_4:67907442-67907461 | Msa0516390:CDS | 60.0% | |
| ! | CGCGGGTTAACAGGCCTTCC+AGG | + | chr3_4:67906640-67906659 | Msa0516390:intron | 65.0% |
| AACAGGCCTTCCAGGTCGGC+CGG | + | chr3_4:67906648-67906667 | Msa0516390:intron | 65.0% | |
| CCTTCCAGGTCGGCCGGATT+GGG | + | chr3_4:67906654-67906673 | Msa0516390:intron | 65.0% | |
| GCCTTCCAGGTCGGCCGGAT+TGG | + | chr3_4:67906653-67906672 | Msa0516390:intron | 70.0% | |
| CCCAATCCGGCCGACCTGGA+AGG | - | chr3_4:67906657-67906676 | None:intergenic | 70.0% | |
| CTGGCCCAATCCGGCCGACC+TGG | - | chr3_4:67906661-67906680 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67904463 | 67908413 | 67904463 | ID=Msa0516390;Name=Msa0516390 |
| chr3_4 | mRNA | 67904463 | 67908413 | 67904463 | ID=Msa0516390-mRNA-1;Parent=Msa0516390;Name=Msa0516390-mRNA-1;_AED=0.35;_eAED=0.35;_QI=1078|1|1|1|0|0.33|3|130|110 |
| chr3_4 | exon | 67904463 | 67905548 | 67904463 | ID=Msa0516390-mRNA-1:exon:17822;Parent=Msa0516390-mRNA-1 |
| chr3_4 | exon | 67907391 | 67907533 | 67907391 | ID=Msa0516390-mRNA-1:exon:17823;Parent=Msa0516390-mRNA-1 |
| chr3_4 | exon | 67908102 | 67908413 | 67908102 | ID=Msa0516390-mRNA-1:exon:17824;Parent=Msa0516390-mRNA-1 |
| chr3_4 | five_prime_UTR | 67904463 | 67905540 | 67904463 | ID=Msa0516390-mRNA-1:five_prime_utr;Parent=Msa0516390-mRNA-1 |
| chr3_4 | CDS | 67905541 | 67905548 | 67905541 | ID=Msa0516390-mRNA-1:cds;Parent=Msa0516390-mRNA-1 |
| chr3_4 | CDS | 67907391 | 67907533 | 67907391 | ID=Msa0516390-mRNA-1:cds;Parent=Msa0516390-mRNA-1 |
| chr3_4 | CDS | 67908102 | 67908283 | 67908102 | ID=Msa0516390-mRNA-1:cds;Parent=Msa0516390-mRNA-1 |
| chr3_4 | three_prime_UTR | 67908284 | 67908413 | 67908284 | ID=Msa0516390-mRNA-1:three_prime_utr;Parent=Msa0516390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
