AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607050 MtrunA17_Chr4g0038621 100.000 71 0 0 1 71 1 71 1.29e-49 150
Msa0607050 MtrunA17_Chr5g0413401 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0607050 MtrunA17_Chr5g0413391 74.576 59 15 0 13 71 38 96 4.80e-29 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607050 AT1G61700.1 87.324 71 9 0 1 71 1 71 2.76e-44 137
Msa0607050 AT1G11475.1 88.732 71 8 0 1 71 1 71 9.87e-44 135

Find 33 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGGAACGAAAAGTGTTTC+AGG 0.227287 4_2:+53695071 None:intergenic
CTGCTTGGAAAACTATTTAA+AGG 0.236886 4_2:+53693028 None:intergenic
AAACAAATGGGACTCTTATC+TGG 0.263347 4_2:-53694770 Msa0607050:CDS
GTCTGGTTCGGTATTGTTGC+AGG 0.287322 4_2:-53693255 Msa0607050:CDS
CACTGACCCTTCAGTGTAAT+CGG 0.370692 4_2:+53694735 None:intergenic
GGTAATCAGTAGTTCCTAAC+TGG 0.371023 4_2:+53693080 None:intergenic
ATTAGGTCATTGGAAACAAA+TGG 0.395280 4_2:-53694783 Msa0607050:intron
CAGTTATAGCTAGTAAAGTT+AGG 0.411822 4_2:-53693008 Msa0607050:three_prime_UTR
GCAACGTAACCGACATATCT+TGG 0.430955 4_2:+53693059 None:intergenic
GGAGAAGGCTGAAGCCAGTT+AGG 0.431342 4_2:-53693094 Msa0607050:exon
TGCACTGGATGCGTTGGGTC+TGG 0.462184 4_2:-53693272 Msa0607050:CDS
CTCAAGAATTTGTCTTATGT+CGG 0.476787 4_2:+53695053 None:intergenic
TGGATGCGTTGGGTCTGGTT+CGG 0.497757 4_2:-53693267 Msa0607050:CDS
CCCGTTCGTTGTTTCACTTG+TGG 0.498971 4_2:-53694973 Msa0607050:CDS
CTTTACTAGCTATAACTGCT+TGG 0.514576 4_2:+53693013 None:intergenic
TATGGATTGCAGAGATGCAC+TGG 0.517566 4_2:-53693287 Msa0607050:intron
CTTCAAGCCGATTACACTGA+AGG 0.518538 4_2:-53694742 Msa0607050:CDS
CCACAAGTGAAACAACGAAC+GGG 0.522867 4_2:+53694973 None:intergenic
CAGAGATGCACTGGATGCGT+TGG 0.526584 4_2:-53693278 Msa0607050:CDS
TCGTTGTTTCACTTGTGGAA+AGG 0.534289 4_2:-53694968 Msa0607050:intron
GTGTCTTGAGCGGAGAAACA+AGG 0.540566 4_2:-53695017 Msa0607050:five_prime_UTR
TTAGGTCATTGGAAACAAAT+GGG 0.545252 4_2:-53694782 Msa0607050:intron
TTCAAGCCGATTACACTGAA+GGG 0.552047 4_2:-53694741 Msa0607050:intron
AGAGATGCACTGGATGCGTT+GGG 0.559881 4_2:-53693277 Msa0607050:CDS
TTGGAAAACTATTTAAAGGA+CGG 0.577333 4_2:+53693032 None:intergenic
TTTGCTTGCAGCTATGGAGA+AGG 0.578496 4_2:-53693109 Msa0607050:intron
CGACATAAGACAAATTCTTG+AGG 0.597109 4_2:-53695052 Msa0607050:five_prime_UTR
TCCACAAGTGAAACAACGAA+CGG 0.616533 4_2:+53694972 None:intergenic
TACTGATTACCAAGATATGT+CGG 0.624490 4_2:-53693068 Msa0607050:three_prime_UTR
TTATAGCTAGTAAAGTTAGG+AGG 0.648294 4_2:-53693005 Msa0607050:intron
GTTTCTCAATGAGATCAACA+TGG 0.660440 4_2:+53693218 None:intergenic
TTTCTCAATGAGATCAACAT+GGG 0.669562 4_2:+53693219 None:intergenic
AGTTCTAGCAGTGTCTTGAG+CGG 0.669580 4_2:-53695027 Msa0607050:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTCTTAAAACCTTA+GGG - chr4_2:53693361-53693380 Msa0607050:intron 15.0%
!!! TTACACAAAGTAAAATTTTA+AGG + chr4_2:53693441-53693460 None:intergenic 15.0%
!! AATTAAAAACTACAATTTAC+AGG + chr4_2:53693494-53693513 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG + chr4_2:53694295-53694314 None:intergenic 15.0%
!!! AAATTTTTCTTAAAACCTTA+GGG - chr4_2:53693361-53693380 Msa0607050:intron 15.0%
!!! TTACACAAAGTAAAATTTTA+AGG + chr4_2:53693441-53693460 None:intergenic 15.0%
!! AATTAAAAACTACAATTTAC+AGG + chr4_2:53693494-53693513 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG + chr4_2:53694295-53694314 None:intergenic 15.0%
!!! TTAAACGCTTTTCAAATTTA+GGG - chr4_2:53693045-53693064 Msa0607050:three_prime_UTR 20.0%
!! ACGAAAATAAACAAGTATTA+GGG + chr4_2:53693301-53693320 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG + chr4_2:53693302-53693321 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG - chr4_2:53693360-53693379 Msa0607050:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG + chr4_2:53693426-53693445 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG - chr4_2:53693598-53693617 Msa0607050:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG - chr4_2:53693750-53693769 Msa0607050:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG - chr4_2:53693813-53693832 Msa0607050:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG - chr4_2:53694293-53694312 Msa0607050:intron 20.0%
!! AAGAGATCTAGTATATTTAA+GGG + chr4_2:53694517-53694536 None:intergenic 20.0%
!! AAAGAGATCTAGTATATTTA+AGG + chr4_2:53694518-53694537 None:intergenic 20.0%
!! AATTTAAACTAATATTTGCC+AGG + chr4_2:53694562-53694581 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG - chr4_2:53694579-53694598 Msa0607050:intron 20.0%
!!! TTAAACGCTTTTCAAATTTA+GGG - chr4_2:53693045-53693064 Msa0607050:three_prime_UTR 20.0%
!! ACGAAAATAAACAAGTATTA+GGG + chr4_2:53693301-53693320 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG + chr4_2:53693302-53693321 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG - chr4_2:53693360-53693379 Msa0607050:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG + chr4_2:53693426-53693445 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG - chr4_2:53693598-53693617 Msa0607050:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG - chr4_2:53693750-53693769 Msa0607050:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG - chr4_2:53693813-53693832 Msa0607050:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG - chr4_2:53694293-53694312 Msa0607050:intron 20.0%
!! AAGAGATCTAGTATATTTAA+GGG + chr4_2:53694517-53694536 None:intergenic 20.0%
!! AAAGAGATCTAGTATATTTA+AGG + chr4_2:53694518-53694537 None:intergenic 20.0%
!! AATTTAAACTAATATTTGCC+AGG + chr4_2:53694562-53694581 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG - chr4_2:53694579-53694598 Msa0607050:intron 20.0%
!! GTTAAACGCTTTTCAAATTT+AGG - chr4_2:53693044-53693063 Msa0607050:three_prime_UTR 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG + chr4_2:53693189-53693208 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG + chr4_2:53693338-53693357 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG - chr4_2:53693338-53693357 Msa0607050:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG - chr4_2:53693450-53693469 Msa0607050:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG - chr4_2:53693458-53693477 Msa0607050:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG - chr4_2:53693604-53693623 Msa0607050:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG - chr4_2:53693753-53693772 Msa0607050:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG - chr4_2:53693819-53693838 Msa0607050:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG - chr4_2:53693848-53693867 Msa0607050:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG - chr4_2:53693878-53693897 Msa0607050:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG + chr4_2:53694067-53694086 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG - chr4_2:53694213-53694232 Msa0607050:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG - chr4_2:53694442-53694461 Msa0607050:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG - chr4_2:53694586-53694605 Msa0607050:intron 25.0%
! TGACAACACAGAATAATATA+GGG + chr4_2:53694726-53694745 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG + chr4_2:53694727-53694746 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG - chr4_2:53694741-53694760 Msa0607050:intron 25.0%
! TTGGAAAACTATTTAAAGGA+CGG + chr4_2:53694862-53694881 None:intergenic 25.0%
!! GTTAAACGCTTTTCAAATTT+AGG - chr4_2:53693044-53693063 Msa0607050:three_prime_UTR 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG + chr4_2:53693189-53693208 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG + chr4_2:53693338-53693357 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG - chr4_2:53693338-53693357 Msa0607050:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG - chr4_2:53693450-53693469 Msa0607050:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG - chr4_2:53693458-53693477 Msa0607050:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG - chr4_2:53693604-53693623 Msa0607050:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG - chr4_2:53693753-53693772 Msa0607050:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG - chr4_2:53693819-53693838 Msa0607050:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG - chr4_2:53693848-53693867 Msa0607050:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG - chr4_2:53693878-53693897 Msa0607050:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG + chr4_2:53694067-53694086 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG - chr4_2:53694213-53694232 Msa0607050:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG - chr4_2:53694442-53694461 Msa0607050:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG - chr4_2:53694586-53694605 Msa0607050:intron 25.0%
! TGACAACACAGAATAATATA+GGG + chr4_2:53694726-53694745 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG + chr4_2:53694727-53694746 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG - chr4_2:53694741-53694760 Msa0607050:intron 25.0%
! TTGGAAAACTATTTAAAGGA+CGG + chr4_2:53694862-53694881 None:intergenic 25.0%
CTCAAGAATTTGTCTTATGT+CGG + chr4_2:53692841-53692860 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG - chr4_2:53693091-53693110 Msa0607050:exon 30.0%
TTGTTTCCAATGACCTAATT+GGG + chr4_2:53693107-53693126 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG + chr4_2:53693108-53693127 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr4_2:53693108-53693127 Msa0607050:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr4_2:53693109-53693128 Msa0607050:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG + chr4_2:53693182-53693201 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG - chr4_2:53693196-53693215 Msa0607050:intron 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG - chr4_2:53693197-53693216 Msa0607050:intron 30.0%
ATAATCACCACACAAAAACT+TGG + chr4_2:53693390-53693409 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG - chr4_2:53693603-53693622 Msa0607050:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG - chr4_2:53693756-53693775 Msa0607050:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG - chr4_2:53693776-53693795 Msa0607050:intron 30.0%
CACCATTCATAATACAAACA+AGG + chr4_2:53693853-53693872 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG - chr4_2:53694000-53694019 Msa0607050:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG - chr4_2:53694135-53694154 Msa0607050:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG - chr4_2:53694136-53694155 Msa0607050:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG - chr4_2:53694368-53694387 Msa0607050:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG - chr4_2:53694369-53694388 Msa0607050:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG - chr4_2:53694393-53694412 Msa0607050:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG - chr4_2:53694541-53694560 Msa0607050:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG + chr4_2:53694675-53694694 None:intergenic 30.0%
GCAAATGTATGATCAATACA+TGG + chr4_2:53694767-53694786 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG - chr4_2:53694823-53694842 Msa0607050:intron 30.0%
CTGCTTGGAAAACTATTTAA+AGG + chr4_2:53694866-53694885 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG - chr4_2:53694883-53694902 Msa0607050:intron 30.0%
TTATAGCTAGTAAAGTTAGG+AGG - chr4_2:53694886-53694905 Msa0607050:intron 30.0%
! CATTTTCATAGAAAAGCTGT+CGG + chr4_2:53695034-53695053 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG - chr4_2:53695033-53695052 Msa0607050:five_prime_UTR 30.0%
TCATAATTGATACTGATGCT+TGG - chr4_2:53695069-53695088 Msa0607050:five_prime_UTR 30.0%
CTCAAGAATTTGTCTTATGT+CGG + chr4_2:53692841-53692860 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG - chr4_2:53693091-53693110 Msa0607050:exon 30.0%
TTGTTTCCAATGACCTAATT+GGG + chr4_2:53693107-53693126 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG + chr4_2:53693108-53693127 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr4_2:53693108-53693127 Msa0607050:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr4_2:53693109-53693128 Msa0607050:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG + chr4_2:53693182-53693201 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG - chr4_2:53693196-53693215 Msa0607050:intron 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG - chr4_2:53693197-53693216 Msa0607050:intron 30.0%
ATAATCACCACACAAAAACT+TGG + chr4_2:53693390-53693409 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG - chr4_2:53693603-53693622 Msa0607050:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG - chr4_2:53693756-53693775 Msa0607050:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG - chr4_2:53693776-53693795 Msa0607050:intron 30.0%
CACCATTCATAATACAAACA+AGG + chr4_2:53693853-53693872 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG - chr4_2:53694000-53694019 Msa0607050:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG - chr4_2:53694135-53694154 Msa0607050:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG - chr4_2:53694136-53694155 Msa0607050:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG - chr4_2:53694368-53694387 Msa0607050:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG - chr4_2:53694369-53694388 Msa0607050:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG - chr4_2:53694393-53694412 Msa0607050:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG - chr4_2:53694541-53694560 Msa0607050:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG + chr4_2:53694675-53694694 None:intergenic 30.0%
GCAAATGTATGATCAATACA+TGG + chr4_2:53694767-53694786 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG - chr4_2:53694823-53694842 Msa0607050:intron 30.0%
CTGCTTGGAAAACTATTTAA+AGG + chr4_2:53694866-53694885 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG - chr4_2:53694883-53694902 Msa0607050:intron 30.0%
TTATAGCTAGTAAAGTTAGG+AGG - chr4_2:53694886-53694905 Msa0607050:intron 30.0%
! CATTTTCATAGAAAAGCTGT+CGG + chr4_2:53695034-53695053 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG - chr4_2:53695033-53695052 Msa0607050:five_prime_UTR 30.0%
CGACATAAGACAAATTCTTG+AGG - chr4_2:53692839-53692858 Msa0607050:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_2:53692962-53692981 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG - chr4_2:53693098-53693117 Msa0607050:CDS 35.0%
AAACAAATGGGACTCTTATC+TGG - chr4_2:53693121-53693140 Msa0607050:intron 35.0%
! ACAAAAACTTGGTAACCCTA+AGG + chr4_2:53693379-53693398 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG - chr4_2:53693608-53693627 Msa0607050:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG - chr4_2:53693636-53693655 Msa0607050:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG + chr4_2:53693645-53693664 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG - chr4_2:53693646-53693665 Msa0607050:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG - chr4_2:53693647-53693666 Msa0607050:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG - chr4_2:53693683-53693702 Msa0607050:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG - chr4_2:53693692-53693711 Msa0607050:intron 35.0%
TTATTTGGCACGCAACAATT+TGG - chr4_2:53693707-53693726 Msa0607050:intron 35.0%
TATTTGGCACGCAACAATTT+GGG - chr4_2:53693708-53693727 Msa0607050:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG - chr4_2:53693881-53693900 Msa0607050:intron 35.0%
!! TTGGAGCATTGTATTAGACT+TGG - chr4_2:53693919-53693938 Msa0607050:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG - chr4_2:53693965-53693984 Msa0607050:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG - chr4_2:53693966-53693985 Msa0607050:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG + chr4_2:53694079-53694098 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG - chr4_2:53694134-53694153 Msa0607050:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG - chr4_2:53694140-53694159 Msa0607050:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG - chr4_2:53694141-53694160 Msa0607050:intron 35.0%
TGGAAACCGAATACACAATT+AGG + chr4_2:53694222-53694241 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG - chr4_2:53694394-53694413 Msa0607050:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG + chr4_2:53694676-53694695 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG + chr4_2:53694881-53694900 None:intergenic 35.0%
!! GTAAAGTTAGGAGGTATTTG+TGG - chr4_2:53694895-53694914 Msa0607050:intron 35.0%
!! AGGAGGTATTTGTGGTTATT+AGG - chr4_2:53694903-53694922 Msa0607050:intron 35.0%
AGGTATTTGTGGTTATTAGG+AGG - chr4_2:53694906-53694925 Msa0607050:intron 35.0%
! CGACAGCTTTTCTATGAAAA+TGG - chr4_2:53695032-53695051 Msa0607050:five_prime_UTR 35.0%
CGACATAAGACAAATTCTTG+AGG - chr4_2:53692839-53692858 Msa0607050:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_2:53692962-53692981 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG - chr4_2:53693098-53693117 Msa0607050:CDS 35.0%
AAACAAATGGGACTCTTATC+TGG - chr4_2:53693121-53693140 Msa0607050:intron 35.0%
! ACAAAAACTTGGTAACCCTA+AGG + chr4_2:53693379-53693398 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG - chr4_2:53693608-53693627 Msa0607050:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG - chr4_2:53693636-53693655 Msa0607050:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG + chr4_2:53693645-53693664 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG - chr4_2:53693646-53693665 Msa0607050:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG - chr4_2:53693647-53693666 Msa0607050:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG - chr4_2:53693683-53693702 Msa0607050:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG - chr4_2:53693692-53693711 Msa0607050:intron 35.0%
TTATTTGGCACGCAACAATT+TGG - chr4_2:53693707-53693726 Msa0607050:intron 35.0%
TATTTGGCACGCAACAATTT+GGG - chr4_2:53693708-53693727 Msa0607050:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG - chr4_2:53693881-53693900 Msa0607050:intron 35.0%
!! TTGGAGCATTGTATTAGACT+TGG - chr4_2:53693919-53693938 Msa0607050:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG - chr4_2:53693965-53693984 Msa0607050:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG - chr4_2:53693966-53693985 Msa0607050:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG + chr4_2:53694079-53694098 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG - chr4_2:53694134-53694153 Msa0607050:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG - chr4_2:53694140-53694159 Msa0607050:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG - chr4_2:53694141-53694160 Msa0607050:intron 35.0%
TGGAAACCGAATACACAATT+AGG + chr4_2:53694222-53694241 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG - chr4_2:53694394-53694413 Msa0607050:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG + chr4_2:53694676-53694695 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG + chr4_2:53694881-53694900 None:intergenic 35.0%
!! GTAAAGTTAGGAGGTATTTG+TGG - chr4_2:53694895-53694914 Msa0607050:intron 35.0%
!! AGGAGGTATTTGTGGTTATT+AGG - chr4_2:53694903-53694922 Msa0607050:intron 35.0%
AGGTATTTGTGGTTATTAGG+AGG - chr4_2:53694906-53694925 Msa0607050:intron 35.0%
! CGACAGCTTTTCTATGAAAA+TGG - chr4_2:53695032-53695051 Msa0607050:five_prime_UTR 35.0%
TCCACAAGTGAAACAACGAA+CGG + chr4_2:53692922-53692941 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG - chr4_2:53692923-53692942 Msa0607050:three_prime_UTR 40.0%
TTCAAGCCGATTACACTGAA+GGG - chr4_2:53693150-53693169 Msa0607050:intron 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG - chr4_2:53693380-53693399 Msa0607050:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG - chr4_2:53693465-53693484 Msa0607050:intron 40.0%
! GCACTGACACTTATAATCGA+AGG - chr4_2:53693519-53693538 Msa0607050:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG - chr4_2:53693614-53693633 Msa0607050:intron 40.0%
! GAGCATTGTATTAGACTTGG+AGG - chr4_2:53693922-53693941 Msa0607050:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG - chr4_2:53693961-53693980 Msa0607050:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG - chr4_2:53694040-53694059 Msa0607050:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG - chr4_2:53694053-53694072 Msa0607050:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG - chr4_2:53694093-53694112 Msa0607050:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG - chr4_2:53694098-53694117 Msa0607050:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG - chr4_2:53694099-53694118 Msa0607050:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG - chr4_2:53694100-53694119 Msa0607050:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG - chr4_2:53694113-53694132 Msa0607050:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG - chr4_2:53694161-53694180 Msa0607050:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG - chr4_2:53694348-53694367 Msa0607050:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG + chr4_2:53694505-53694524 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG + chr4_2:53694506-53694525 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG - chr4_2:53694776-53694795 Msa0607050:CDS 40.0%
GGTAATCAGTAGTTCCTAAC+TGG + chr4_2:53694814-53694833 None:intergenic 40.0%
TCCACAAGTGAAACAACGAA+CGG + chr4_2:53692922-53692941 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG - chr4_2:53692923-53692942 Msa0607050:three_prime_UTR 40.0%
TTCAAGCCGATTACACTGAA+GGG - chr4_2:53693150-53693169 Msa0607050:intron 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG - chr4_2:53693380-53693399 Msa0607050:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG - chr4_2:53693465-53693484 Msa0607050:intron 40.0%
! GCACTGACACTTATAATCGA+AGG - chr4_2:53693519-53693538 Msa0607050:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG - chr4_2:53693614-53693633 Msa0607050:intron 40.0%
! GAGCATTGTATTAGACTTGG+AGG - chr4_2:53693922-53693941 Msa0607050:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG - chr4_2:53693961-53693980 Msa0607050:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG - chr4_2:53694040-53694059 Msa0607050:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG - chr4_2:53694053-53694072 Msa0607050:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG - chr4_2:53694093-53694112 Msa0607050:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG - chr4_2:53694098-53694117 Msa0607050:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG - chr4_2:53694099-53694118 Msa0607050:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG - chr4_2:53694100-53694119 Msa0607050:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG - chr4_2:53694113-53694132 Msa0607050:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG - chr4_2:53694161-53694180 Msa0607050:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG - chr4_2:53694348-53694367 Msa0607050:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG + chr4_2:53694505-53694524 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG + chr4_2:53694506-53694525 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG - chr4_2:53694776-53694795 Msa0607050:CDS 40.0%
GGTAATCAGTAGTTCCTAAC+TGG + chr4_2:53694814-53694833 None:intergenic 40.0%
! AGTTCTAGCAGTGTCTTGAG+CGG - chr4_2:53692864-53692883 Msa0607050:three_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG + chr4_2:53692921-53692940 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG - chr4_2:53693149-53693168 Msa0607050:intron 45.0%
CACTGACCCTTCAGTGTAAT+CGG + chr4_2:53693159-53693178 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG - chr4_2:53693652-53693671 Msa0607050:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG - chr4_2:53693653-53693672 Msa0607050:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG - chr4_2:53693671-53693690 Msa0607050:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG - chr4_2:53693676-53693695 Msa0607050:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG - chr4_2:53693716-53693735 Msa0607050:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG + chr4_2:53693949-53693968 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG - chr4_2:53693977-53693996 Msa0607050:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG - chr4_2:53694006-53694025 Msa0607050:intron 45.0%
AAGGACCGCACACAAATTTC+AGG + chr4_2:53694048-53694067 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG + chr4_2:53694152-53694171 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG - chr4_2:53694177-53694196 Msa0607050:intron 45.0%
AAAACAGCCCAACCACAACA+AGG + chr4_2:53694192-53694211 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG + chr4_2:53694242-53694261 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG - chr4_2:53694604-53694623 Msa0607050:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG - chr4_2:53694782-53694801 Msa0607050:intron 45.0%
GCAACGTAACCGACATATCT+TGG + chr4_2:53694835-53694854 None:intergenic 45.0%
! AGTTCTAGCAGTGTCTTGAG+CGG - chr4_2:53692864-53692883 Msa0607050:three_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG + chr4_2:53692921-53692940 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG - chr4_2:53693149-53693168 Msa0607050:intron 45.0%
CACTGACCCTTCAGTGTAAT+CGG + chr4_2:53693159-53693178 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG - chr4_2:53693652-53693671 Msa0607050:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG - chr4_2:53693653-53693672 Msa0607050:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG - chr4_2:53693671-53693690 Msa0607050:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG - chr4_2:53693676-53693695 Msa0607050:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG - chr4_2:53693716-53693735 Msa0607050:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG + chr4_2:53693949-53693968 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG - chr4_2:53693977-53693996 Msa0607050:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG - chr4_2:53694006-53694025 Msa0607050:intron 45.0%
AAGGACCGCACACAAATTTC+AGG + chr4_2:53694048-53694067 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG + chr4_2:53694152-53694171 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG - chr4_2:53694177-53694196 Msa0607050:intron 45.0%
AAAACAGCCCAACCACAACA+AGG + chr4_2:53694192-53694211 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG + chr4_2:53694242-53694261 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG - chr4_2:53694604-53694623 Msa0607050:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG - chr4_2:53694782-53694801 Msa0607050:intron 45.0%
GCAACGTAACCGACATATCT+TGG + chr4_2:53694835-53694854 None:intergenic 45.0%
!!! TTTTGATTAATAAAAAAAAA+GGG + chr4_2:53693228-53693247 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG + chr4_2:53693229-53693248 None:intergenic 5.0%
!!! TTTTGATTAATAAAAAAAAA+GGG + chr4_2:53693228-53693247 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG + chr4_2:53693229-53693248 None:intergenic 5.0%
GTGTCTTGAGCGGAGAAACA+AGG - chr4_2:53692874-53692893 Msa0607050:three_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG - chr4_2:53692918-53692937 Msa0607050:three_prime_UTR 50.0%
CGAATTGCTTCAATAGGCGG+TGG - chr4_2:53693884-53693903 Msa0607050:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG - chr4_2:53693887-53693906 Msa0607050:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG - chr4_2:53693888-53693907 Msa0607050:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG - chr4_2:53694181-53694200 Msa0607050:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG - chr4_2:53694182-53694201 Msa0607050:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG - chr4_2:53694313-53694332 Msa0607050:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG - chr4_2:53694314-53694333 Msa0607050:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG - chr4_2:53694614-53694633 Msa0607050:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG - chr4_2:53694636-53694655 Msa0607050:intron 50.0%
GTGTCTTGAGCGGAGAAACA+AGG - chr4_2:53692874-53692893 Msa0607050:three_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG - chr4_2:53692918-53692937 Msa0607050:three_prime_UTR 50.0%
CGAATTGCTTCAATAGGCGG+TGG - chr4_2:53693884-53693903 Msa0607050:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG - chr4_2:53693887-53693906 Msa0607050:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG - chr4_2:53693888-53693907 Msa0607050:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG - chr4_2:53694181-53694200 Msa0607050:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG - chr4_2:53694182-53694201 Msa0607050:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG - chr4_2:53694313-53694332 Msa0607050:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG - chr4_2:53694314-53694333 Msa0607050:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG - chr4_2:53694614-53694633 Msa0607050:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG - chr4_2:53694636-53694655 Msa0607050:intron 50.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG - chr4_2:53693658-53693677 Msa0607050:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG - chr4_2:53694319-53694338 Msa0607050:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG - chr4_2:53694613-53694632 Msa0607050:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG - chr4_2:53694624-53694643 Msa0607050:intron 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG - chr4_2:53694797-53694816 Msa0607050:intron 55.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG - chr4_2:53693658-53693677 Msa0607050:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG - chr4_2:53694319-53694338 Msa0607050:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG - chr4_2:53694613-53694632 Msa0607050:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG - chr4_2:53694624-53694643 Msa0607050:intron 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG - chr4_2:53694797-53694816 Msa0607050:intron 55.0%
!! CTTCAATAGGCGGTGGTGGG+TGG - chr4_2:53693891-53693910 Msa0607050:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG - chr4_2:53694619-53694638 Msa0607050:intron 60.0%
!! CTTCAATAGGCGGTGGTGGG+TGG - chr4_2:53693891-53693910 Msa0607050:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG - chr4_2:53694619-53694638 Msa0607050:intron 60.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG - chr4_2:53693900-53693919 Msa0607050:intron 65.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG - chr4_2:53693900-53693919 Msa0607050:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 53692823 53695090 53692823 ID=Msa0607050;Name=Msa0607050
chr4_2 mRNA 53692823 53695090 53692823 ID=Msa0607050-mRNA-1;Parent=Msa0607050;Name=Msa0607050-mRNA-1;_AED=0.18;_eAED=0.18;_QI=86|1|1|1|0.75|0.6|5|239|71
chr4_2 exon 53692823 53692972 53692823 ID=Msa0607050-mRNA-1:exon:13362;Parent=Msa0607050-mRNA-1
chr4_2 exon 53693006 53693120 53693006 ID=Msa0607050-mRNA-1:exon:13361;Parent=Msa0607050-mRNA-1
chr4_2 exon 53693203 53693297 53693203 ID=Msa0607050-mRNA-1:exon:13360;Parent=Msa0607050-mRNA-1
chr4_2 exon 53694742 53694800 53694742 ID=Msa0607050-mRNA-1:exon:13359;Parent=Msa0607050-mRNA-1
chr4_2 exon 53694969 53695090 53694969 ID=Msa0607050-mRNA-1:exon:13358;Parent=Msa0607050-mRNA-1
chr4_2 five_prime_UTR 53695005 53695090 53695005 ID=Msa0607050-mRNA-1:five_prime_utr;Parent=Msa0607050-mRNA-1
chr4_2 CDS 53694969 53695004 53694969 ID=Msa0607050-mRNA-1:cds;Parent=Msa0607050-mRNA-1
chr4_2 CDS 53694742 53694800 53694742 ID=Msa0607050-mRNA-1:cds;Parent=Msa0607050-mRNA-1
chr4_2 CDS 53693203 53693297 53693203 ID=Msa0607050-mRNA-1:cds;Parent=Msa0607050-mRNA-1
chr4_2 CDS 53693095 53693120 53693095 ID=Msa0607050-mRNA-1:cds;Parent=Msa0607050-mRNA-1
chr4_2 three_prime_UTR 53693006 53693094 53693006 ID=Msa0607050-mRNA-1:three_prime_utr;Parent=Msa0607050-mRNA-1
chr4_2 three_prime_UTR 53692823 53692972 53692823 ID=Msa0607050-mRNA-1:three_prime_utr;Parent=Msa0607050-mRNA-1
Gene Sequence

>Msa0607050

ATGATTATTCCCGTTCGTTGTTTCACTTGTGGAAAGGTCATTGGAAACAAATGGGACTCTTATCTGGACTTTCTTCAAGCCGATTACACTGAAGGAGATGCACTGGATGCGTTGGGTCTGGTTCGGTATTGTTGCAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAACTATTGAACTATAACACTATGGAGAAGGCTGAAGCCAGTTAG

Protein sequence

>Msa0607050

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKAEAS*