Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306960 | XP_003627446.1 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.88e-90 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306960 | B7FMF3 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 3.29e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026750 | Msa1306960 | 0.801338 | 9.440666e-49 | -8.615850e-47 |
| Msa0042490 | Msa1306960 | -0.829432 | 5.164049e-55 | -8.615850e-47 |
| Msa0079580 | Msa1306960 | -0.818201 | 2.217428e-52 | -8.615850e-47 |
| Msa0095940 | Msa1306960 | 0.817619 | 3.002270e-52 | -8.615850e-47 |
| Msa0101960 | Msa1306960 | 0.812901 | 3.358102e-51 | -8.615850e-47 |
| Msa0613420 | Msa1306960 | 0.805460 | 1.320812e-49 | -8.615850e-47 |
| Msa0641130 | Msa1306960 | 0.807190 | 5.706129e-50 | -8.615850e-47 |
| Msa0687210 | Msa1306960 | 0.809440 | 1.890149e-50 | -8.615850e-47 |
| Msa0833270 | Msa1306960 | 0.826781 | 2.246948e-54 | -8.615850e-47 |
| Msa0836180 | Msa1306960 | 0.820392 | 7.026098e-53 | -8.615850e-47 |
| Msa0168310 | Msa1306960 | 0.817337 | 3.474562e-52 | -8.615850e-47 |
| Msa0215820 | Msa1306960 | 0.809693 | 1.668135e-50 | -8.615850e-47 |
| Msa1234470 | Msa1306960 | 0.983966 | 3.288022e-159 | -8.615850e-47 |
| Msa1238600 | Msa1306960 | 0.816973 | 4.195294e-52 | -8.615850e-47 |
| Msa1238660 | Msa1306960 | 0.802559 | 5.298037e-49 | -8.615850e-47 |
| Msa1256060 | Msa1306960 | 0.848782 | 4.922218e-60 | -8.615850e-47 |
| Msa1289050 | Msa1306960 | 0.820646 | 6.144550e-53 | -8.615850e-47 |
| Msa1289090 | Msa1306960 | 0.827982 | 1.158162e-54 | -8.615850e-47 |
| Msa1306830 | Msa1306960 | 0.804873 | 1.752777e-49 | -8.615850e-47 |
| Msa1306960 | Msa1315480 | 0.941959 | 1.671706e-101 | -8.615850e-47 |
| Msa1306960 | Msa1319560 | 0.805926 | 1.054123e-49 | -8.615850e-47 |
| Msa1306960 | Msa1362290 | 0.805484 | 1.305522e-49 | -8.615850e-47 |
| Msa1306960 | Msa1436590 | 0.804347 | 2.256038e-49 | -8.615850e-47 |
| Msa1306960 | Msa1450440 | 0.802731 | 4.881255e-49 | -8.615850e-47 |
| Msa1042580 | Msa1306960 | 0.815568 | 8.647619e-52 | -8.615850e-47 |
| Msa1069890 | Msa1306960 | 0.809577 | 1.766102e-50 | -8.615850e-47 |
| Msa0282780 | Msa1306960 | 0.832270 | 1.040557e-55 | -8.615850e-47 |
| Msa0295420 | Msa1306960 | 0.808198 | 3.484057e-50 | -8.615850e-47 |
| Msa0342980 | Msa1306960 | 0.849868 | 2.452699e-60 | -8.615850e-47 |
| Msa0349340 | Msa1306960 | 0.821824 | 3.288118e-53 | -8.615850e-47 |
| Msa0351430 | Msa1306960 | 0.806851 | 6.729720e-50 | -8.615850e-47 |
| Msa0351470 | Msa1306960 | 0.801240 | 9.887070e-49 | -8.615850e-47 |
| Msa0355550 | Msa1306960 | 0.812180 | 4.826801e-51 | -8.615850e-47 |
| Msa1140630 | Msa1306960 | 0.845804 | 3.232342e-59 | -8.615850e-47 |
| Msa1159470 | Msa1306960 | 0.822612 | 2.157698e-53 | -8.615850e-47 |
| Msa1175100 | Msa1306960 | 0.991538 | 3.501685e-188 | -8.615850e-47 |
| Msa1213890 | Msa1306960 | 0.800829 | 1.199563e-48 | -8.615850e-47 |
| Msa1218570 | Msa1306960 | 0.807919 | 3.994342e-50 | -8.615850e-47 |
| Msa0517220 | Msa1306960 | 0.802837 | 4.641829e-49 | -8.615850e-47 |
| Msa0545050 | Msa1306960 | 0.807257 | 5.520361e-50 | -8.615850e-47 |
| Msa0576900 | Msa1306960 | 0.822840 | 1.909470e-53 | -8.615850e-47 |
| Msa0880800 | Msa1306960 | 0.808646 | 2.795629e-50 | -8.615850e-47 |
| Msa0943970 | Msa1306960 | 0.806876 | 6.647546e-50 | -8.615850e-47 |
| Msa0944020 | Msa1306960 | 0.809493 | 1.841453e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306960 | MtrunA17_Chr8g0345171 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.33e-94 | 266 |
| Msa1306960 | MtrunA17_Chr7g0276621 | 55.469 | 128 | 43 | 6 | 1 | 123 | 23 | 141 | 1.01e-37 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306960 | AT3G14280.1 | 39.815 | 108 | 57 | 3 | 21 | 128 | 21 | 120 | 2.84e-15 | 68.2 |
Find 29 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTGAATTGCAATAAAA+TGG | 0.221285 | 8_4:+1919672 | Msa1306960:exon |
| TTCTTGAAGAATTAGCTTAA+TGG | 0.238281 | 8_4:+1918637 | Msa1306960:exon |
| GAATTATCATATTTCTGAAT+TGG | 0.275390 | 8_4:-1918689 | None:intergenic |
| AAGAAGAAGATGAGATAATA+AGG | 0.331139 | 8_4:-1918600 | None:intergenic |
| AATTATCATATTTCTGAATT+GGG | 0.345181 | 8_4:-1918688 | None:intergenic |
| TTGTCTCACTCATAGCTTTG+AGG | 0.351441 | 8_4:+1919725 | Msa1306960:three_prime_UTR |
| AGTTGGTTTCAAATTGCAAA+AGG | 0.405294 | 8_4:+1919602 | Msa1306960:CDS |
| CTTTGGAGCATAGCATCGTT+TGG | 0.411384 | 8_4:-1918744 | None:intergenic |
| TGAATCTTCTAAAACAAAGT+TGG | 0.441522 | 8_4:+1919585 | Msa1306960:CDS |
| CTTGAAATTTGTCTATAAGA+TGG | 0.456782 | 8_4:-1919264 | None:intergenic |
| TCAAATAGCACATGTGTAGT+AGG | 0.464126 | 8_4:+1919794 | Msa1306960:three_prime_UTR |
| TTATTTCTCCACTCTCATCT+TGG | 0.480024 | 8_4:-1919218 | None:intergenic |
| GTTGGTTTCAAATTGCAAAA+GGG | 0.500062 | 8_4:+1919603 | Msa1306960:CDS |
| ATTTGTGAAGGGTATGATGA+AGG | 0.501766 | 8_4:+1919240 | Msa1306960:CDS |
| GACCAACGGTTCATCACAAA+AGG | 0.504204 | 8_4:+1919286 | Msa1306960:CDS |
| GAAATTGATGATGCAATTGA+AGG | 0.528412 | 8_4:+1919629 | Msa1306960:CDS |
| GTGGAGAAATAATTTGTGAA+GGG | 0.550320 | 8_4:+1919229 | Msa1306960:CDS |
| AGTGGAGAAATAATTTGTGA+AGG | 0.561503 | 8_4:+1919228 | Msa1306960:CDS |
| TTTGTGAAGGGTATGATGAA+GGG | 0.566441 | 8_4:+1919241 | Msa1306960:CDS |
| CACAGCATCCATCAAGAACA+AGG | 0.570428 | 8_4:+1918802 | Msa1306960:CDS |
| ATTCTTCAAGAACAAGAAAG+AGG | 0.573168 | 8_4:-1918626 | None:intergenic |
| AAGAAGATGAGATAATAAGG+AGG | 0.575986 | 8_4:-1918597 | None:intergenic |
| TAGACAAATTTCAAGACCAA+CGG | 0.578411 | 8_4:+1919272 | Msa1306960:CDS |
| TGAAGGTGGTCGTTTGCAAG+AGG | 0.580771 | 8_4:+1919646 | Msa1306960:CDS |
| AAAGTCAACAGTTGGTCCAG+TGG | 0.602548 | 8_4:+1918769 | Msa1306960:CDS |
| CAAAGCTATGAGTGAGACAA+AGG | 0.622287 | 8_4:-1919722 | None:intergenic |
| ATTTGCTACCAAGATGAGAG+TGG | 0.633835 | 8_4:+1919210 | Msa1306960:CDS |
| CTTCAAGAACAAGAAAGAGG+TGG | 0.639571 | 8_4:-1918623 | None:intergenic |
| ATTGATGATGCAATTGAAGG+TGG | 0.706142 | 8_4:+1919632 | Msa1306960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCATATTTCTGAATT+GGG | - | chr8_4:1918691-1918710 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | - | chr8_4:1918835-1918854 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | - | chr8_4:1918878-1918897 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | + | chr8_4:1918924-1918943 | Msa1306960:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | + | chr8_4:1919044-1919063 | Msa1306960:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | - | chr8_4:1919370-1919389 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | + | chr8_4:1919371-1919390 | Msa1306960:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | + | chr8_4:1919672-1919691 | Msa1306960:exon | 15.0% |
| !!! | AATTATCATATTTCTGAATT+GGG | - | chr8_4:1918691-1918710 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | - | chr8_4:1918835-1918854 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | - | chr8_4:1918878-1918897 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | + | chr8_4:1918924-1918943 | Msa1306960:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | + | chr8_4:1919044-1919063 | Msa1306960:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | - | chr8_4:1919370-1919389 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | + | chr8_4:1919371-1919390 | Msa1306960:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | + | chr8_4:1919672-1919691 | Msa1306960:exon | 15.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | - | chr8_4:1918692-1918711 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | + | chr8_4:1918934-1918953 | Msa1306960:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | - | chr8_4:1919012-1919031 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | + | chr8_4:1919064-1919083 | Msa1306960:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | + | chr8_4:1919334-1919353 | Msa1306960:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | + | chr8_4:1919529-1919548 | Msa1306960:intron | 20.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | - | chr8_4:1918692-1918711 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | + | chr8_4:1918934-1918953 | Msa1306960:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | - | chr8_4:1919012-1919031 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | + | chr8_4:1919064-1919083 | Msa1306960:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | + | chr8_4:1919334-1919353 | Msa1306960:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | + | chr8_4:1919529-1919548 | Msa1306960:intron | 20.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | - | chr8_4:1918587-1918606 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | - | chr8_4:1918603-1918622 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | + | chr8_4:1918637-1918656 | Msa1306960:exon | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | + | chr8_4:1918942-1918961 | Msa1306960:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | + | chr8_4:1918981-1919000 | Msa1306960:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | - | chr8_4:1919013-1919032 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | + | chr8_4:1919100-1919119 | Msa1306960:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | + | chr8_4:1919158-1919177 | Msa1306960:intron | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | + | chr8_4:1919170-1919189 | Msa1306960:intron | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | - | chr8_4:1919267-1919286 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | + | chr8_4:1919585-1919604 | Msa1306960:CDS | 25.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | - | chr8_4:1918587-1918606 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | - | chr8_4:1918603-1918622 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | + | chr8_4:1918637-1918656 | Msa1306960:exon | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | + | chr8_4:1918942-1918961 | Msa1306960:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | + | chr8_4:1918981-1919000 | Msa1306960:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | - | chr8_4:1919013-1919032 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | + | chr8_4:1919100-1919119 | Msa1306960:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | + | chr8_4:1919158-1919177 | Msa1306960:intron | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | + | chr8_4:1919170-1919189 | Msa1306960:intron | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | - | chr8_4:1919267-1919286 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | + | chr8_4:1919585-1919604 | Msa1306960:CDS | 25.0% |
| AAGAAGATGAGATAATAAGG+AGG | - | chr8_4:1918600-1918619 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | - | chr8_4:1918629-1918648 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | - | chr8_4:1918813-1918832 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | + | chr8_4:1919007-1919026 | Msa1306960:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | + | chr8_4:1919021-1919040 | Msa1306960:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | + | chr8_4:1919228-1919247 | Msa1306960:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | + | chr8_4:1919229-1919248 | Msa1306960:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | + | chr8_4:1919272-1919291 | Msa1306960:CDS | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | + | chr8_4:1919374-1919393 | Msa1306960:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | + | chr8_4:1919402-1919421 | Msa1306960:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | + | chr8_4:1919430-1919449 | Msa1306960:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | + | chr8_4:1919441-1919460 | Msa1306960:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | + | chr8_4:1919467-1919486 | Msa1306960:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | - | chr8_4:1919548-1919567 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | + | chr8_4:1919549-1919568 | Msa1306960:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | + | chr8_4:1919550-1919569 | Msa1306960:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | + | chr8_4:1919602-1919621 | Msa1306960:CDS | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | + | chr8_4:1919603-1919622 | Msa1306960:CDS | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | + | chr8_4:1919629-1919648 | Msa1306960:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | - | chr8_4:1919826-1919845 | None:intergenic | 30.0% | |
| AAGAAGATGAGATAATAAGG+AGG | - | chr8_4:1918600-1918619 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | - | chr8_4:1918629-1918648 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | - | chr8_4:1918813-1918832 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | + | chr8_4:1919007-1919026 | Msa1306960:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | + | chr8_4:1919021-1919040 | Msa1306960:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | + | chr8_4:1919228-1919247 | Msa1306960:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | + | chr8_4:1919229-1919248 | Msa1306960:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | + | chr8_4:1919272-1919291 | Msa1306960:CDS | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | + | chr8_4:1919374-1919393 | Msa1306960:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | + | chr8_4:1919402-1919421 | Msa1306960:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | + | chr8_4:1919430-1919449 | Msa1306960:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | + | chr8_4:1919441-1919460 | Msa1306960:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | + | chr8_4:1919467-1919486 | Msa1306960:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | - | chr8_4:1919548-1919567 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | + | chr8_4:1919549-1919568 | Msa1306960:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | + | chr8_4:1919550-1919569 | Msa1306960:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | + | chr8_4:1919602-1919621 | Msa1306960:CDS | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | + | chr8_4:1919603-1919622 | Msa1306960:CDS | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | + | chr8_4:1919629-1919648 | Msa1306960:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | - | chr8_4:1919826-1919845 | None:intergenic | 30.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | - | chr8_4:1918764-1918783 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | + | chr8_4:1918761-1918780 | Msa1306960:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | - | chr8_4:1919108-1919127 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | + | chr8_4:1919105-1919124 | Msa1306960:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | + | chr8_4:1919183-1919202 | Msa1306960:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | - | chr8_4:1919221-1919240 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | + | chr8_4:1919240-1919259 | Msa1306960:CDS | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | + | chr8_4:1919241-1919260 | Msa1306960:CDS | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | + | chr8_4:1919405-1919424 | Msa1306960:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | + | chr8_4:1919632-1919651 | Msa1306960:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | + | chr8_4:1919794-1919813 | Msa1306960:three_prime_UTR | 35.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | - | chr8_4:1918764-1918783 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | + | chr8_4:1918761-1918780 | Msa1306960:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | - | chr8_4:1919108-1919127 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | + | chr8_4:1919105-1919124 | Msa1306960:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | + | chr8_4:1919183-1919202 | Msa1306960:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | - | chr8_4:1919221-1919240 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | + | chr8_4:1919240-1919259 | Msa1306960:CDS | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | + | chr8_4:1919241-1919260 | Msa1306960:CDS | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | + | chr8_4:1919405-1919424 | Msa1306960:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | + | chr8_4:1919632-1919651 | Msa1306960:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | + | chr8_4:1919794-1919813 | Msa1306960:three_prime_UTR | 35.0% | |
| CTTCAAGAACAAGAAAGAGG+TGG | - | chr8_4:1918626-1918645 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | - | chr8_4:1918788-1918807 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | + | chr8_4:1919210-1919229 | Msa1306960:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | - | chr8_4:1919291-1919310 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | - | chr8_4:1919410-1919429 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | - | chr8_4:1919725-1919744 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | + | chr8_4:1919725-1919744 | Msa1306960:three_prime_UTR | 40.0% |
| CTTCAAGAACAAGAAAGAGG+TGG | - | chr8_4:1918626-1918645 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | - | chr8_4:1918788-1918807 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | + | chr8_4:1919210-1919229 | Msa1306960:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | - | chr8_4:1919291-1919310 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | - | chr8_4:1919410-1919429 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | - | chr8_4:1919725-1919744 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | + | chr8_4:1919725-1919744 | Msa1306960:three_prime_UTR | 40.0% |
| !! | CTTTGGAGCATAGCATCGTT+TGG | - | chr8_4:1918747-1918766 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | + | chr8_4:1918769-1918788 | Msa1306960:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | + | chr8_4:1918802-1918821 | Msa1306960:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | + | chr8_4:1919286-1919305 | Msa1306960:CDS | 45.0% | |
| !! | CTTTGGAGCATAGCATCGTT+TGG | - | chr8_4:1918747-1918766 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | + | chr8_4:1918769-1918788 | Msa1306960:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | + | chr8_4:1918802-1918821 | Msa1306960:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | + | chr8_4:1919286-1919305 | Msa1306960:CDS | 45.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | + | chr8_4:1919421-1919440 | Msa1306960:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | + | chr8_4:1919646-1919665 | Msa1306960:CDS | 50.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | + | chr8_4:1919421-1919440 | Msa1306960:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | + | chr8_4:1919646-1919665 | Msa1306960:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 1918583 | 1919853 | 1918583 | ID=Msa1306960;Name=Msa1306960 |
| chr8_4 | mRNA | 1918583 | 1919853 | 1918583 | ID=Msa1306960-mRNA-1;Parent=Msa1306960;Name=Msa1306960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=73|1|1|1|1|1|3|174|134 |
| chr8_4 | exon | 1918583 | 1918823 | 1918583 | ID=Msa1306960-mRNA-1:exon:642;Parent=Msa1306960-mRNA-1 |
| chr8_4 | exon | 1919180 | 1919307 | 1919180 | ID=Msa1306960-mRNA-1:exon:643;Parent=Msa1306960-mRNA-1 |
| chr8_4 | exon | 1919571 | 1919853 | 1919571 | ID=Msa1306960-mRNA-1:exon:644;Parent=Msa1306960-mRNA-1 |
| chr8_4 | five_prime_UTR | 1918583 | 1918655 | 1918583 | ID=Msa1306960-mRNA-1:five_prime_utr;Parent=Msa1306960-mRNA-1 |
| chr8_4 | CDS | 1918656 | 1918823 | 1918656 | ID=Msa1306960-mRNA-1:cds;Parent=Msa1306960-mRNA-1 |
| chr8_4 | CDS | 1919180 | 1919307 | 1919180 | ID=Msa1306960-mRNA-1:cds;Parent=Msa1306960-mRNA-1 |
| chr8_4 | CDS | 1919571 | 1919679 | 1919571 | ID=Msa1306960-mRNA-1:cds;Parent=Msa1306960-mRNA-1 |
| chr8_4 | three_prime_UTR | 1919680 | 1919853 | 1919680 | ID=Msa1306960-mRNA-1:three_prime_utr;Parent=Msa1306960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
