AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538050 MtrunA17_Chr4g0001471 96.597 382 10 1 1 382 1 379 0.0 752
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538050 AT1G73060.1 72.222 378 83 3 5 381 1 357 0.0 530

Find 214 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 4_1:+17146501 Msa0538040:CDS
GGCAAGCTTGCTGCAGATTT+TGG 0.164117 4_1:-17147256 Msa0538050:three_prime_UTR
GGTGGGGACTTCAGAATTTA+AGG 0.170474 4_1:+17146045 Msa0538040:CDS
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 4_1:+17147559 Msa0538040:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 4_1:-17146024 Msa0538050:three_prime_UTR
TCATTATAATCATACATATT+TGG 0.213712 4_1:+17148588 None:intergenic
TAAACAGATACACCTGATTT+AGG 0.217240 4_1:+17153887 None:intergenic
TTCTGCAAGGGCGTTGGTTC+CGG 0.218060 4_1:+17147534 Msa0538040:CDS
CTGCATGGAGGAAGCATTTA+AGG 0.231374 4_1:+17147452 Msa0538040:CDS
ATATCTCTTCTAAGATCTTT+TGG 0.250851 4_1:-17146837 Msa0538050:three_prime_UTR
CAGCAACATTTCTTCATATA+AGG 0.266428 4_1:-17152573 Msa0538050:intron
GACCCTCAACAATTCTTCTT+TGG 0.270857 4_1:+17149253 None:intergenic
CCTTTGTCCTCGTATTTCTT+TGG 0.275526 4_1:+17148666 None:intergenic
ATACAGTGTGACAAACATTT+TGG 0.276062 4_1:+17147844 None:intergenic
TGAATTCGCAGTGCTGATTT+AGG 0.279676 4_1:-17150382 Msa0538050:intron
AGTGCTGATTTAGGCCTTCT+AGG 0.283454 4_1:-17150373 Msa0538050:CDS
AAAGCGGTATTGCAAATCTT+TGG 0.283496 4_1:+17150342 None:intergenic
CAGAGAAGACTTACATAGTT+AGG 0.283571 4_1:+17147083 Msa0538040:CDS
AATAAAAGTGTTGGGGTTGA+TGG 0.284314 4_1:+17150523 None:intergenic
AGGGGTCGATGAAGAAAATT+TGG 0.285665 4_1:+17146803 Msa0538040:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 4_1:-17146503 Msa0538050:three_prime_UTR
TCTGCAAGGGCGTTGGTTCC+GGG 0.297464 4_1:+17147535 Msa0538040:CDS
CCACTGTAATTGACAATATA+AGG 0.298504 4_1:+17150143 None:intergenic
AAATTTGGGGAAAACTTCTA+TGG 0.302110 4_1:-17146009 Msa0538050:three_prime_UTR
CTTGGGACCGAAAACTATAA+AGG 0.303401 4_1:-17148031 Msa0538050:three_prime_UTR
GCCTAGAGCCATGTATTTAT+AGG 0.310323 4_1:-17147876 Msa0538050:three_prime_UTR
CATAGACAGTAACAAAATTT+GGG 0.315147 4_1:-17146023 Msa0538050:three_prime_UTR
GTGTTGTGTGGCACTGAAAT+TGG 0.317840 4_1:+17154114 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 4_1:+17146529 Msa0538040:CDS
AAATTGGCTCAGCACAAATA+TGG 0.323793 4_1:+17154130 None:intergenic
TCCATAGTAATAGCTATTAT+GGG 0.333113 4_1:+17146502 Msa0538040:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 4_1:-17147672 Msa0538050:three_prime_UTR
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 4_1:-17147673 Msa0538050:three_prime_UTR
CAAGATTAAATAAAAGTGTT+GGG 0.358312 4_1:+17150515 None:intergenic
AATTTCTACGAAGAGGCTAT+AGG 0.362385 4_1:-17149196 Msa0538050:CDS
TCAATCAATGTCGGTTCGTC+TGG 0.370374 4_1:+17146665 Msa0538040:CDS
CTTTGGGTGGGAAGCCTAGA+AGG 0.376335 4_1:+17150359 None:intergenic
ATACAACAGTCTATGCTTCT+CGG 0.384722 4_1:+17147587 Msa0538040:CDS
TCATTGAGAGCACTGAAATC+AGG 0.395867 4_1:-17147688 Msa0538050:three_prime_UTR
ATGAACAACATCTCATCAAC+TGG 0.395916 4_1:-17147115 Msa0538050:three_prime_UTR
AAGCGGTATTGCAAATCTTT+GGG 0.399943 4_1:+17150343 None:intergenic
GTGGGAAGAAGATTCTGATT+TGG 0.401550 4_1:-17148842 Msa0538050:CDS
TTAGGATCGAAACCACGATT+TGG 0.404526 4_1:+17153905 None:intergenic
TGAAGAAGTTCTTGCTTATG+AGG 0.407718 4_1:+17147718 None:intergenic
GAAGAATTGTTGAGGGTCCT+TGG 0.409519 4_1:-17149248 Msa0538050:CDS
ATTTCTACGAAGAGGCTATA+GGG 0.409617 4_1:-17149195 Msa0538050:intron
AAGGTTGATGGCCTTACTAT+AGG 0.409941 4_1:-17151660 Msa0538050:CDS
TTGGGACCGAAAACTATAAA+GGG 0.413993 4_1:-17148030 Msa0538050:three_prime_UTR
CTTGCAGAATCATCACTTCC+CGG 0.414286 4_1:-17147520 Msa0538050:three_prime_UTR
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 4_1:+17147607 Msa0538040:CDS
TTCACGGTTCTTGTTGATGA+TGG 0.422131 4_1:-17147277 Msa0538050:three_prime_UTR
TACCTCACTCATAGCTTTCA+CGG 0.425446 4_1:-17147293 Msa0538050:three_prime_UTR
TTACTCCAGTGTTCTACATT+CGG 0.425820 4_1:-17150309 Msa0538050:CDS
TCCTGCAGGGATATCATCTA+AGG 0.428313 4_1:+17151635 None:intergenic
CTTATATGAAGAAATGTTGC+TGG 0.430887 4_1:+17152574 None:intergenic
CCTCTTCTTCTTGAAGTCCA+AGG 0.433964 4_1:+17149231 None:intergenic
AAATTTGTCCGGTCCCGACT+TGG 0.444331 4_1:+17147983 None:intergenic
CGTGGTTTCGATCCTAAATC+AGG 0.444850 4_1:-17153899 Msa0538050:CDS
TCCATTGTTGCGAATAGAAA+CGG 0.447494 4_1:-17147402 Msa0538050:three_prime_UTR
TGCCAACATTCAACTTGTCT+TGG 0.448124 4_1:-17152088 Msa0538050:CDS
TCATAAATCGTTCAGGTCCC+TGG 0.448130 4_1:-17149435 Msa0538050:intron
TTGCTTAAGCATCACCTGCC+AGG 0.449595 4_1:+17149417 None:intergenic
GCGAGAACTTCATAAGACTT+AGG 0.454079 4_1:+17153860 None:intergenic
GGGTGTTCAACCACTTGTAT+TGG 0.454525 4_1:-17146779 Msa0538050:three_prime_UTR
ATGGAAAACAAAACCTCTCC+AGG 0.456409 4_1:-17146484 Msa0538050:three_prime_UTR
TCAGTTGTTCAAAGCAGCTC+TGG 0.458399 4_1:-17151869 Msa0538050:CDS
GCATCATCGCTTGCTTCCTC+CGG 0.465125 4_1:+17146728 Msa0538040:CDS
GCTTGCTTCCTCCGGACCTA+AGG 0.465489 4_1:+17146736 Msa0538040:CDS
CATCTTCAAAGTCAAAATCA+AGG 0.471831 4_1:+17151577 None:intergenic
AATGAAGCCACAGGTCCTGC+AGG 0.472666 4_1:+17151621 None:intergenic
TCAAGATTAAATAAAAGTGT+TGG 0.473701 4_1:+17150514 None:intergenic
TACATTAATTAAACTGTGCA+TGG 0.475186 4_1:+17148523 None:intergenic
TTAGTAGTAGAAATTGAAGA+AGG 0.484021 4_1:+17153998 None:intergenic
TTCACCAGCTCTCTTGAACT+TGG 0.484399 4_1:-17147646 Msa0538050:three_prime_UTR
CTGACTCTTTCCCTTAGGTC+CGG 0.486118 4_1:-17146747 Msa0538050:three_prime_UTR
GACTTTGAAGATGAGAATGA+AGG 0.486387 4_1:-17151567 Msa0538050:intron
AGCGTCTGACTCTTTCCCTT+AGG 0.488363 4_1:-17146752 Msa0538050:three_prime_UTR
AATAGCAGTACACGTGAACT+TGG 0.489119 4_1:-17151318 Msa0538050:CDS
AATTTGTCCGGTCCCGACTT+GGG 0.490665 4_1:+17147984 None:intergenic
ATATAGCTGTACCAGGGTAC+TGG 0.490688 4_1:+17150108 None:intergenic
TGAAGAAATGTTGCTGGGCA+AGG 0.493271 4_1:+17152580 None:intergenic
AGAGAAGACTTACATAGTTA+GGG 0.493349 4_1:+17147084 Msa0538040:CDS
GAAAGCATGTAAAGAAGTTG+AGG 0.502958 4_1:+17145812 Msa0538040:CDS
TTCTTAGAAGTGCAGGTCGT+TGG 0.503758 4_1:-17151377 Msa0538050:intron
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 4_1:+17147009 Msa0538040:intron
GAAGAAGGTGAAGAAGATAG+TGG 0.505084 4_1:+17154013 None:intergenic
TCATTGGCCCAAGTCGGGAC+CGG 0.505309 4_1:-17147991 Msa0538050:three_prime_UTR
GGCATTTGCTTTAGAAGCAG+AGG 0.505619 4_1:+17147318 Msa0538040:CDS
AATTCACATTTCTTGTATTG+TGG 0.506801 4_1:+17145840 Msa0538040:CDS
GACAATCGCAGCGGCAGCAG+TGG 0.513635 4_1:-17147759 Msa0538050:three_prime_UTR
AGTGCAACTCGCTTCACCCT+TGG 0.516086 4_1:-17149364 Msa0538050:CDS
TCTAAAATAATAAATTTGTC+CGG 0.516532 4_1:+17147972 None:intergenic
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 4_1:+17146871 Msa0538040:CDS
TCCTTAGATGATATCCCTGC+AGG 0.518676 4_1:-17151636 Msa0538050:CDS
ATTCGCAACAATGGAGAACA+TGG 0.522904 4_1:+17147410 Msa0538040:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 4_1:-17146662 Msa0538050:three_prime_UTR
TGGAGGAAATGAGGATCAAA+AGG 0.526808 4_1:+17146685 Msa0538040:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 4_1:+17147401 Msa0538040:CDS
GTATTTGTCAGCTGCAGTGT+TGG 0.529453 4_1:+17147818 None:intergenic
GATAGTGGAGAAAGATGTGA+AGG 0.532078 4_1:+17154028 None:intergenic
AGAGTTGCTAACATGGGCAT+TGG 0.533440 4_1:+17147231 Msa0538040:CDS
TGATGATTCTGCAAGGGCGT+TGG 0.534637 4_1:+17147528 Msa0538040:CDS
GGAAGAAAAGTGAGGTTGTG+AGG 0.536168 4_1:+17154049 None:intergenic
TTTCACAGTACACTTGGTCA+GGG 0.537219 4_1:+17146442 Msa0538040:intron
GAAAGCTATGAGTGAGGTAG+AGG 0.537681 4_1:+17147297 Msa0538040:CDS
GAGATGTTGTTCATCATTCG+TGG 0.539150 4_1:+17147124 Msa0538040:CDS
TTGCAATTCAAGACAGCCTA+AGG 0.541247 4_1:+17148629 None:intergenic
CTAGAGAGTGTTACTACAGA+TGG 0.541421 4_1:+17147151 Msa0538040:CDS
AGTTCAAGTAAGCATATACC+AGG 0.542819 4_1:+17145864 Msa0538040:CDS
GTCTTCTCTGTATATAAACT+CGG 0.543647 4_1:-17147070 Msa0538050:three_prime_UTR
TAGACACATACATAGTAGAC+AGG 0.544177 4_1:+17147366 Msa0538040:CDS
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 4_1:+17146668 Msa0538040:CDS
TAGGCTTGTTGAATTTCGAT+AGG 0.548727 4_1:+17147894 None:intergenic
CATCTAAGGAGCCTATAGTA+AGG 0.549669 4_1:+17151649 None:intergenic
CGGTATTGCAAATCTTTGGG+TGG 0.549941 4_1:+17150346 None:intergenic
CAACACAATGCTACTATCCA+TGG 0.551674 4_1:-17154092 Msa0538050:exon
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 4_1:+17146872 Msa0538040:CDS
GCACTGAAATCAGGTTCTGA+GGG 0.551873 4_1:-17147679 Msa0538050:three_prime_UTR
AGAAGTGGCTTCTTCAACAG+AGG 0.551875 4_1:+17147178 Msa0538040:CDS
CTTGCTTCCTCCGGACCTAA+GGG 0.552988 4_1:+17146737 Msa0538040:CDS
AGCACTGAAATCAGGTTCTG+AGG 0.553944 4_1:-17147680 Msa0538050:three_prime_UTR
AAATCGTTCAGGTCCCTGGC+AGG 0.556462 4_1:-17149431 Msa0538050:intron
TTTGACGAACTTTGAGGACC+CGG 0.557037 4_1:-17147553 Msa0538050:three_prime_UTR
AAAGCATGTAAAGAAGTTGA+GGG 0.558423 4_1:+17145813 Msa0538040:CDS
TTGCAGAATCATCACTTCCC+GGG 0.558557 4_1:-17147519 Msa0538050:three_prime_UTR
TGCTTAAGCATCACCTGCCA+GGG 0.558854 4_1:+17149418 None:intergenic
GCCTATAAATACATGGCTCT+AGG 0.559293 4_1:+17147875 None:intergenic
TACAAATAGTGTCATGCTGA+AGG 0.559604 4_1:-17147781 Msa0538050:three_prime_UTR
GAAGAAATGTTGCTGGGCAA+GGG 0.561828 4_1:+17152581 None:intergenic
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 4_1:+17146676 Msa0538040:CDS
GGCCAAAGAAGAATTGTTGA+GGG 0.563652 4_1:-17149255 Msa0538050:CDS
TGGTTATATTGAGAAGTATG+TGG 0.564545 4_1:-17151298 Msa0538050:intron
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 4_1:+17147642 Msa0538040:CDS
TCTTCTGATTGGAAACATGC+AGG 0.565687 4_1:+17146540 Msa0538040:CDS
ACTACAGATGGTGGAAGAAG+TGG 0.567107 4_1:+17147163 Msa0538040:CDS
AGCCAAGACAAGTTGAATGT+TGG 0.570943 4_1:+17152086 None:intergenic
TTATATGAAGAAATGTTGCT+GGG 0.572669 4_1:+17152575 None:intergenic
AAGATTAAATAAAAGTGTTG+GGG 0.574401 4_1:+17150516 None:intergenic
TTCACAGTACACTTGGTCAG+GGG 0.577586 4_1:+17146443 Msa0538040:intron
TGCTCATATGCAGAGAAAGA+AGG 0.579598 4_1:-17148739 Msa0538050:three_prime_UTR
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 4_1:+17147468 Msa0538040:CDS
GCTGTGTTTCGCCAGTACCC+TGG 0.579836 4_1:-17150119 Msa0538050:intron
CCATAGTAATAGCTATTATG+GGG 0.581237 4_1:+17146503 Msa0538040:CDS
TTAATGAATATGTAGAGCGA+TGG 0.581715 4_1:+17151339 None:intergenic
CCTTGGACTTCAAGAAGAAG+AGG 0.584366 4_1:-17149231 Msa0538050:CDS
ATGAATATGTAGAGCGATGG+AGG 0.586924 4_1:+17151342 None:intergenic
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 4_1:+17147464 Msa0538040:CDS
TCTCTAGAATTTCTACGAAG+AGG 0.589731 4_1:-17149203 Msa0538050:CDS
CCTCTAGCAATGTTCTACTC+AGG 0.589927 4_1:+17148798 None:intergenic
ATTGCAGTCAAGCACGTGGT+GGG 0.590052 4_1:-17148860 Msa0538050:intron
CTGATCCGAATGTAGAACAC+TGG 0.590070 4_1:+17150304 None:intergenic
CAATCTATATTCAAGCTGCA+TGG 0.590954 4_1:+17147437 Msa0538040:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 4_1:+17147458 Msa0538040:CDS
AATGCTACTATCCATGGCTA+TGG 0.594263 4_1:-17154086 Msa0538050:CDS
ATATTACGAATCTGATTACC+CGG 0.594747 4_1:+17147501 Msa0538040:CDS
GGTATTGCAAATCTTTGGGT+GGG 0.594858 4_1:+17150347 None:intergenic
TAGCATTGTGTTGTGTTGTG+TGG 0.596955 4_1:+17154102 None:intergenic
GCGATGATGCATCCACTGCT+CGG 0.598686 4_1:-17146715 Msa0538050:three_prime_UTR
AAACTCTTTGAATTAATACT+CGG 0.600293 4_1:+17147934 None:intergenic
ATCTTCAAAGTCAAAATCAA+GGG 0.605002 4_1:+17151578 None:intergenic
ATATACCAGGGTATGACAGT+TGG 0.606713 4_1:+17145877 Msa0538040:CDS
ACATTAATTAAACTGTGCAT+GGG 0.606724 4_1:+17148524 None:intergenic
GACTAGTACCTACCCTGGAG+AGG 0.607375 4_1:+17146471 Msa0538040:CDS
CCTTATATTGTCAATTACAG+TGG 0.607987 4_1:-17150143 Msa0538050:CDS
TGATATCCCTGCAGGACCTG+TGG 0.610302 4_1:-17151628 Msa0538050:CDS
ATCTTGAGCTAGATACACTA+CGG 0.610940 4_1:-17150498 Msa0538050:intron
AGGCCAAAGAAGAATTGTTG+AGG 0.612770 4_1:-17149256 Msa0538050:CDS
GAGAGTGTTACTACAGATGG+TGG 0.613056 4_1:+17147154 Msa0538040:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 4_1:+17146656 Msa0538040:intron
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 4_1:+17147471 Msa0538040:CDS
ACTCTTTCCCTTAGGTCCGG+AGG 0.617015 4_1:-17146744 Msa0538050:three_prime_UTR
AGATGACATAGCCATAGCCA+TGG 0.618729 4_1:+17154075 None:intergenic
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 4_1:+17146703 Msa0538040:CDS
TCATGAACTTACTTCACCAA+GGG 0.622484 4_1:+17149348 None:intergenic
AAACAAAACCTCTCCAGGGT+AGG 0.625990 4_1:-17146479 Msa0538050:three_prime_UTR
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 4_1:+17147224 Msa0538040:CDS
CGGGAAGTGATGATTCTGCA+AGG 0.626896 4_1:+17147521 Msa0538040:CDS
AAGACTTACATAGTTAGGGA+AGG 0.629987 4_1:+17147088 Msa0538040:CDS
ATGAAGCCACAGGTCCTGCA+GGG 0.630187 4_1:+17151622 None:intergenic
TACAAGTGGTTGAACACCCG+AGG 0.630986 4_1:+17146783 Msa0538040:CDS
ATTTGGAAGTATCATCTGCA+TGG 0.634373 4_1:-17148825 Msa0538050:CDS
TCTTCATCAGAGCCAAATCG+TGG 0.636063 4_1:-17153917 Msa0538050:CDS
GTGGTTAGCCTATAAATACA+TGG 0.636389 4_1:+17147868 None:intergenic
GACGCTACGACCAATACAAG+TGG 0.637852 4_1:+17146769 Msa0538040:CDS
TACACAAGCATAAGAACCAT+CGG 0.638469 4_1:+17149393 None:intergenic
TATTGCAGTCAAGCACGTGG+TGG 0.640120 4_1:-17148861 Msa0538050:intron
TTCATGAACTTACTTCACCA+AGG 0.640836 4_1:+17149347 None:intergenic
GTGATGCTTAAGCAAACCGA+TGG 0.643172 4_1:-17149409 Msa0538050:CDS
CCAAAGAAATACGAGGACAA+AGG 0.643246 4_1:-17148666 Msa0538050:three_prime_UTR
CTTGGACTTCAAGAAGAAGA+GGG 0.644314 4_1:-17149230 Msa0538050:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 4_1:-17146483 Msa0538050:three_prime_UTR
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 4_1:-17147013 Msa0538050:three_prime_UTR
GGGAAGTGATGATTCTGCAA+GGG 0.645571 4_1:+17147522 Msa0538040:CDS
GAGTAAATTGAGAAAGAAAG+CGG 0.647482 4_1:+17150326 None:intergenic
TTTCTCCAACTGTCATACCC+TGG 0.659364 4_1:-17145882 Msa0538050:three_prime_UTR
TCGGATCAGAGATTATTCAA+AGG 0.660666 4_1:-17150290 Msa0538050:intron
ATAGACAGTAACAAAATTTG+GGG 0.668163 4_1:-17146022 Msa0538050:three_prime_UTR
CTTCTGACTAGTACCTACCC+TGG 0.672528 4_1:+17146466 Msa0538040:CDS
CCTGAGTAGAACATTGCTAG+AGG 0.675597 4_1:-17148798 Msa0538050:exon
ACAAGTGGTTGAACACCCGA+GGG 0.676415 4_1:+17146784 Msa0538040:CDS
AACCGTGAAAGCTATGAGTG+AGG 0.683734 4_1:+17147291 Msa0538040:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 4_1:+17147411 Msa0538040:CDS
GATGTGAAGGAAGAAAAGTG+AGG 0.687118 4_1:+17154041 None:intergenic
AGCTGCTTTGAACAACTGAG+AGG 0.692149 4_1:+17151873 None:intergenic
GAGTAGAACATTGCTAGAGG+AGG 0.693732 4_1:-17148795 Msa0538050:three_prime_UTR
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 4_1:+17147225 Msa0538040:CDS
TATTACGAATCTGATTACCC+GGG 0.702346 4_1:+17147502 Msa0538040:CDS
AACCGACATTGATTGAAGGT+AGG 0.702813 4_1:-17146658 Msa0538050:three_prime_UTR
TCTATATTCAAGCTGCATGG+AGG 0.707083 4_1:+17147440 Msa0538040:CDS
TGGAAGTATCATCTGCATGG+CGG 0.725682 4_1:-17148822 Msa0538050:CDS
TGATATTGCAGTCAAGCACG+TGG 0.735833 4_1:-17148864 Msa0538050:intron
ATGCTGAAGGACAATCGCAG+CGG 0.746460 4_1:-17147768 Msa0538050:three_prime_UTR
GTTCAAGTAAGCATATACCA+GGG 0.749555 4_1:+17145865 Msa0538040:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 4_1:+17146785 Msa0538040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAGCAAATTTAAAAT+CGG - chr4_1:17146763-17146782 Msa0538050:three_prime_UTR 10.0%
!! TATTATTCAATATTTATCTA+TGG - chr4_1:17147188-17147207 Msa0538050:three_prime_UTR 10.0%
!!! ATTTTAACAAATTTTCATTA+TGG - chr4_1:17147607-17147626 Msa0538050:three_prime_UTR 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr4_1:17151912-17151931 Msa0538050:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr4_1:17151913-17151932 Msa0538050:intron 10.0%
!!! AATTTGAAACTATATTTGTA+GGG - chr4_1:17146626-17146645 Msa0538050:intron 15.0%
!! TAATTTATCCTACTAATATT+TGG + chr4_1:17147537-17147556 Msa0538040:CDS 15.0%
!! ATACAACAAATTAAATAACT+AGG + chr4_1:17149379-17149398 None:intergenic 15.0%
!!! ATATTTTCTCAAATAATATG+AGG - chr4_1:17149752-17149771 Msa0538050:intron 15.0%
!! CGATTTATGAAAAATATTTA+GGG + chr4_1:17150516-17150535 None:intergenic 15.0%
!! ACGATTTATGAAAAATATTT+AGG + chr4_1:17150517-17150536 None:intergenic 15.0%
!!! TATAAATATTTTAAGAAGGT+TGG + chr4_1:17150973-17150992 None:intergenic 15.0%
!!! CTTGTATAAATATTTTAAGA+AGG + chr4_1:17150977-17150996 None:intergenic 15.0%
!! TTTAAAAGAAAAAACTATGT+AGG + chr4_1:17151253-17151272 None:intergenic 15.0%
!! TCATTATAATCATACATATT+TGG + chr4_1:17151376-17151395 None:intergenic 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr4_1:17151628-17151647 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTTCAT+TGG - chr4_1:17151954-17151973 Msa0538050:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr4_1:17151992-17152011 None:intergenic 15.0%
!! ATATTTATAAAGGATGATAT+AGG - chr4_1:17153625-17153644 Msa0538050:intron 15.0%
!! AAATATATATGTATTAGTGT+CGG + chr4_1:17153796-17153815 None:intergenic 15.0%
!!! TTGCTATTTTCTCAAATTTT+CGG + chr4_1:17146389-17146408 Msa0538040:intron 20.0%
!! CTTGATATTGTGAAAATTTA+TGG - chr4_1:17146532-17146551 Msa0538050:three_prime_UTR 20.0%
!! TGTGAAAATTTATGGATAAA+TGG - chr4_1:17146540-17146559 Msa0538050:three_prime_UTR 20.0%
!!! CAATTTGAAACTATATTTGT+AGG - chr4_1:17146625-17146644 Msa0538050:intron 20.0%
!! GTAATTAAAAGGAGATTATT+TGG - chr4_1:17147047-17147066 Msa0538050:three_prime_UTR 20.0%
!! TTCAATATTTATCTATGGAA+AGG - chr4_1:17147193-17147212 Msa0538050:three_prime_UTR 20.0%
!! AGAAAAAATGTTGAAAATGT+AGG + chr4_1:17147232-17147251 Msa0538040:CDS 20.0%
!!! TAATAACAATATTTTGCTTG+CGG - chr4_1:17147299-17147318 Msa0538050:three_prime_UTR 20.0%
!!! TGAATTATTTGTTTCAGTTT+TGG - chr4_1:17147453-17147472 Msa0538050:three_prime_UTR 20.0%
!!! TGAAAATTTGTTAAAATCCA+TGG + chr4_1:17147604-17147623 Msa0538040:CDS 20.0%
!! TCAAATTCCTAAATATTTCA+AGG - chr4_1:17147828-17147847 Msa0538050:three_prime_UTR 20.0%
!! CAAATTCCTAAATATTTCAA+GGG - chr4_1:17147829-17147848 Msa0538050:three_prime_UTR 20.0%
!!! GAATATTCTTATTTACTATG+AGG - chr4_1:17148139-17148158 Msa0538050:intron 20.0%
!! TATGATATCTTCATTCTTTA+TGG + chr4_1:17148232-17148251 None:intergenic 20.0%
!!! TTCATCTTTATTTTGTTTCA+AGG - chr4_1:17148282-17148301 Msa0538050:intron 20.0%
!!! AAATTTTTCTTGAGTCATAT+TGG - chr4_1:17148503-17148522 Msa0538050:three_prime_UTR 20.0%
!!! TTCATGATTTTTTATCTGTT+CGG - chr4_1:17148711-17148730 Msa0538050:three_prime_UTR 20.0%
!! ATTCTCGAATTAGAAATATA+GGG + chr4_1:17149087-17149106 None:intergenic 20.0%
!! TAAATAGTAAAACTTGATGT+AGG - chr4_1:17149245-17149264 Msa0538050:CDS 20.0%
!!! AAGATTAAATAAAAGTGTTG+GGG + chr4_1:17149448-17149467 None:intergenic 20.0%
!!! CAAGATTAAATAAAAGTGTT+GGG + chr4_1:17149449-17149468 None:intergenic 20.0%
!!! TCAAGATTAAATAAAAGTGT+TGG + chr4_1:17149450-17149469 None:intergenic 20.0%
!!! TTGTACTCTTTTTTGTTTAT+TGG - chr4_1:17149492-17149511 Msa0538050:intron 20.0%
!! CAGATAATGATAAATATCTA+GGG + chr4_1:17149720-17149739 None:intergenic 20.0%
!! TCAGATAATGATAAATATCT+AGG + chr4_1:17149721-17149740 None:intergenic 20.0%
!! TCAAATTGTCAATATGAAAA+AGG - chr4_1:17150356-17150375 Msa0538050:CDS 20.0%
!! CAAATTGTCAATATGAAAAA+GGG - chr4_1:17150357-17150376 Msa0538050:CDS 20.0%
!! ATTCATTTGTGTAATGAATT+TGG - chr4_1:17150391-17150410 Msa0538050:intron 20.0%
!! ATAAAAAAAAACTAGCTATC+TGG + chr4_1:17150444-17150463 None:intergenic 20.0%
!!! ATATTTTTCATAAATCGTTC+AGG - chr4_1:17150519-17150538 Msa0538050:CDS 20.0%
!! ATACCTTATCTAATATCTAT+TGG - chr4_1:17150675-17150694 Msa0538050:intron 20.0%
!!! ATGTGTAAATTTTACATAAG+AGG + chr4_1:17150884-17150903 None:intergenic 20.0%
!! ATAGGATCATAAATCATATT+TGG - chr4_1:17151032-17151051 Msa0538050:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG - chr4_1:17151601-17151620 Msa0538050:CDS 20.0%
!! AAACTCTTTGAATTAATACT+CGG + chr4_1:17152030-17152049 None:intergenic 20.0%
!! ATGTTTACAGTAAAAACTTT+CGG - chr4_1:17153394-17153413 Msa0538050:intron 20.0%
!! GAATCAAAGCATATTTATAA+AGG - chr4_1:17153615-17153634 Msa0538050:intron 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG - chr4_1:17153833-17153852 Msa0538050:CDS 20.0%
! TTAGTAGTAGAAATTGAAGA+AGG + chr4_1:17145966-17145985 Msa0538040:CDS 25.0%
! TTCATATTCATTAATTGACG+TGG + chr4_1:17146312-17146331 Msa0538040:intron 25.0%
! AACTATATTTGTAGGGAATT+TGG - chr4_1:17146633-17146652 Msa0538050:intron 25.0%
! TCAATATTTGAATCCAACAT+TGG - chr4_1:17146710-17146729 Msa0538050:three_prime_UTR 25.0%
!!! TAGTTGCTTTGCTATTATTA+TGG - chr4_1:17146876-17146895 Msa0538050:intron 25.0%
! TGTATTCCAAATTACTTGTT+TGG - chr4_1:17146948-17146967 Msa0538050:intron 25.0%
! AAAGATCCAAACAAGTAATT+TGG + chr4_1:17146957-17146976 Msa0538040:intron 25.0%
!!! TAGAGAATCTATTTTTGTGT+AGG + chr4_1:17146982-17147001 Msa0538040:intron 25.0%
! GGGACATAATAGTAATTAAA+AGG - chr4_1:17147036-17147055 Msa0538050:three_prime_UTR 25.0%
! TTTGGTTGAGAGATAATATT+TGG - chr4_1:17147065-17147084 Msa0538050:three_prime_UTR 25.0%
! TTATATGAAGAAATGTTGCT+GGG + chr4_1:17147389-17147408 Msa0538040:CDS 25.0%
!! TGTATATAGGTCTATGTTTT+TGG - chr4_1:17147484-17147503 Msa0538050:three_prime_UTR 25.0%
! ACAAAGTTCCAAATATTAGT+AGG - chr4_1:17147526-17147545 Msa0538050:three_prime_UTR 25.0%
! TTAAAATCCATGGTAAACAA+AGG + chr4_1:17147594-17147613 Msa0538040:CDS 25.0%
!! ATATTTTGCTAATCAGAAGT+AGG + chr4_1:17147658-17147677 Msa0538040:CDS 25.0%
!!! TTATTTTGTTTCAAGGTTGA+TGG - chr4_1:17148289-17148308 Msa0538050:intron 25.0%
! ATCTTCAAAGTCAAAATCAA+GGG + chr4_1:17148386-17148405 None:intergenic 25.0%
! TAATGCATAAGTTTCAAACA+TGG + chr4_1:17148476-17148495 None:intergenic 25.0%
!! ATTAAATTTCTTAGAAGTGC+AGG - chr4_1:17148577-17148596 Msa0538050:three_prime_UTR 25.0%
! AAAATCATGAAACCTTCTAA+TGG + chr4_1:17148702-17148721 None:intergenic 25.0%
!!! GTTCTTTCATTTGTTGTTTT+TGG - chr4_1:17148862-17148881 Msa0538050:intron 25.0%
! TAGTATGATTATATTCCCTT+GGG + chr4_1:17149011-17149030 None:intergenic 25.0%
! TTAGTATGATTATATTCCCT+TGG + chr4_1:17149012-17149031 None:intergenic 25.0%
! TTCTCGAATTAGAAATATAG+GGG + chr4_1:17149086-17149105 None:intergenic 25.0%
! CATTCTCGAATTAGAAATAT+AGG + chr4_1:17149088-17149107 None:intergenic 25.0%
!! TTATATTGTGCTATTGGTAA+TGG + chr4_1:17149122-17149141 None:intergenic 25.0%
!! TTTGGTTTATATTGTGCTAT+TGG + chr4_1:17149128-17149147 None:intergenic 25.0%
!! TCAAGTTTTACTATTTACTG+CGG + chr4_1:17149242-17149261 None:intergenic 25.0%
! GAAATGTGAGTTTCTTAATA+TGG - chr4_1:17149301-17149320 Msa0538050:intron 25.0%
!! TTCTATTACTACTATTTTGC+AGG - chr4_1:17149404-17149423 Msa0538050:CDS 25.0%
! ATAAATATATAGCTGTACCA+GGG + chr4_1:17149862-17149881 None:intergenic 25.0%
! TATAAATATATAGCTGTACC+AGG + chr4_1:17149863-17149882 None:intergenic 25.0%
! ATCATGTATCACAGATTATT+AGG + chr4_1:17149944-17149963 None:intergenic 25.0%
! TGTTAATATTAGATAACTGG+TGG + chr4_1:17150071-17150090 None:intergenic 25.0%
!! TGGTGTTAATATTAGATAAC+TGG + chr4_1:17150074-17150093 None:intergenic 25.0%
! TCAGTATATGTAACAACAAT+AGG - chr4_1:17150113-17150132 Msa0538050:intron 25.0%
! AATGAGAAATAGAGGAAATA+TGG + chr4_1:17150217-17150236 None:intergenic 25.0%
! CACAAAGAATTATCAAAATC+TGG - chr4_1:17150271-17150290 Msa0538050:intron 25.0%
! AGATAATATGCAATAAGGTA+AGG + chr4_1:17150306-17150325 None:intergenic 25.0%
! GATACAGATAATATGCAATA+AGG + chr4_1:17150311-17150330 None:intergenic 25.0%
!! ATTGGCAAATAAAAGCATAT+TGG + chr4_1:17150480-17150499 None:intergenic 25.0%
! TCACAGTTAGTAAGAAAATA+AGG + chr4_1:17150645-17150664 None:intergenic 25.0%
! AAGCCAATAGATATTAGATA+AGG + chr4_1:17150681-17150700 None:intergenic 25.0%
! TTATTTCAACCATAGCAAAA+AGG + chr4_1:17150841-17150860 None:intergenic 25.0%
!! AGCCAAATTTTCATTATAGT+GGG - chr4_1:17151004-17151023 Msa0538050:intron 25.0%
! AACCCACTATAATGAAAATT+TGG + chr4_1:17151009-17151028 None:intergenic 25.0%
!!! TCATTATAGTGGGTTATTAT+AGG - chr4_1:17151014-17151033 Msa0538050:intron 25.0%
! ACATTAATTAAACTGTGCAT+GGG + chr4_1:17151440-17151459 None:intergenic 25.0%
! TACATTAATTAAACTGTGCA+TGG + chr4_1:17151441-17151460 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG - chr4_1:17151606-17151625 Msa0538050:CDS 25.0%
! ACTGTATATACCAAACAAAA+AGG - chr4_1:17151708-17151727 Msa0538050:intron 25.0%
!! AAAACTCCCTTTATAGTTTT+CGG + chr4_1:17151940-17151959 None:intergenic 25.0%
! GTGTATGACATATATTATTC+AGG + chr4_1:17152976-17152995 None:intergenic 25.0%
! TGAGAAAATAAAGAGTTAGA+AGG - chr4_1:17153006-17153025 Msa0538050:intron 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG + chr4_1:17153092-17153111 None:intergenic 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG + chr4_1:17153093-17153112 None:intergenic 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG - chr4_1:17153124-17153143 Msa0538050:intron 25.0%
! TCCATAGTAATAGCTATTAT+GGG + chr4_1:17153462-17153481 None:intergenic 25.0%
! TTCCATAGTAATAGCTATTA+TGG + chr4_1:17153463-17153482 None:intergenic 25.0%
!!! GTTTTATAGGTGTTATAATG+AGG - chr4_1:17153846-17153865 Msa0538050:CDS 25.0%
! CATAGACAGTAACAAAATTT+GGG - chr4_1:17153938-17153957 Msa0538050:CDS 25.0%
! ATAGACAGTAACAAAATTTG+GGG - chr4_1:17153939-17153958 Msa0538050:CDS 25.0%
! AATTCACATTTCTTGTATTG+TGG + chr4_1:17154124-17154143 None:intergenic 25.0%
! TGATGAAGAAGCTTCTTTTT+CGG + chr4_1:17146033-17146052 Msa0538040:CDS 30.0%
TAAACAGATACACCTGATTT+AGG + chr4_1:17146077-17146096 Msa0538040:intron 30.0%
AGAATGAAAGTTAAACGTAC+GGG + chr4_1:17146193-17146212 Msa0538040:intron 30.0%
GAGAATGAAAGTTAAACGTA+CGG + chr4_1:17146194-17146213 Msa0538040:intron 30.0%
GAGTGTAAGTAGTTTATGTT+TGG - chr4_1:17146242-17146261 Msa0538050:intron 30.0%
GTTCTATGTAGTACATATCA+CGG + chr4_1:17146488-17146507 Msa0538040:CDS 30.0%
TAGAACTAGTGTTATCACTA+TGG - chr4_1:17146502-17146521 Msa0538050:three_prime_UTR 30.0%
CTGTCAAAATCTTTATGTTG+CGG - chr4_1:17146583-17146602 Msa0538050:intron 30.0%
GGATTCAAATATTGATCAAC+TGG + chr4_1:17146705-17146724 Msa0538040:CDS 30.0%
! AAATTTAAAATCGGAGCTGT+TGG - chr4_1:17146772-17146791 Msa0538050:three_prime_UTR 30.0%
! AATTTAAAATCGGAGCTGTT+GGG - chr4_1:17146773-17146792 Msa0538050:three_prime_UTR 30.0%
! TTGCTATTATTATGGATGCA+TGG - chr4_1:17146884-17146903 Msa0538050:intron 30.0%
CTAAAGTCACCAAATATCAA+CGG + chr4_1:17147005-17147024 Msa0538040:intron 30.0%
CAAAATGTAGACAATCGAAA+GGG - chr4_1:17147115-17147134 Msa0538050:three_prime_UTR 30.0%
AGGAACAAAAAAGATCAGAA+TGG + chr4_1:17147343-17147362 Msa0538040:CDS 30.0%
!!! ATTCTGATCTTTTTTGTTCC+TGG - chr4_1:17147342-17147361 Msa0538050:three_prime_UTR 30.0%
!!! TTCTGATCTTTTTTGTTCCT+GGG - chr4_1:17147343-17147362 Msa0538050:three_prime_UTR 30.0%
CTTATATGAAGAAATGTTGC+TGG + chr4_1:17147390-17147409 Msa0538040:CDS 30.0%
CAGCAACATTTCTTCATATA+AGG - chr4_1:17147388-17147407 Msa0538050:three_prime_UTR 30.0%
TTTGGTCCTTCATTGTATAT+AGG - chr4_1:17147471-17147490 Msa0538050:three_prime_UTR 30.0%
CATAGACCTATATACAATGA+AGG + chr4_1:17147480-17147499 Msa0538040:CDS 30.0%
TTGTAGCTAAGCTAATATGA+TGG - chr4_1:17147706-17147725 Msa0538050:three_prime_UTR 30.0%
TGTAGCTAAGCTAATATGAT+GGG - chr4_1:17147707-17147726 Msa0538050:three_prime_UTR 30.0%
GAAGATCCCTTGAAATATTT+AGG + chr4_1:17147838-17147857 None:intergenic 30.0%
!!! TAGATTTGGGACTTTTTTGT+AGG - chr4_1:17148035-17148054 Msa0538050:three_prime_UTR 30.0%
! CCAATAGTGTGATCATTTTA+TGG + chr4_1:17148182-17148201 None:intergenic 30.0%
CCATAAAATGATCACACTAT+TGG - chr4_1:17148179-17148198 Msa0538050:intron 30.0%
ATGAAACTTCAGAATATGAC+AGG + chr4_1:17148267-17148286 None:intergenic 30.0%
CATCTTCAAAGTCAAAATCA+AGG + chr4_1:17148387-17148406 None:intergenic 30.0%
TTAATGAATATGTAGAGCGA+TGG + chr4_1:17148625-17148644 None:intergenic 30.0%
! TGGTTATATTGAGAAGTATG+TGG - chr4_1:17148663-17148682 Msa0538050:three_prime_UTR 30.0%
! ATATTGAGAAGTATGTGGTA+TGG - chr4_1:17148668-17148687 Msa0538050:three_prime_UTR 30.0%
CATTCTTATCTGTATTAGCT+TGG - chr4_1:17148764-17148783 Msa0538050:three_prime_UTR 30.0%
!!! GACGTTTATTTTTTCTCCAT+TGG - chr4_1:17148807-17148826 Msa0538050:exon 30.0%
TGCACATTATTTATCACCAA+TGG + chr4_1:17148826-17148845 None:intergenic 30.0%
AATTTATACTGTCAAACCCA+AGG - chr4_1:17148992-17149011 Msa0538050:intron 30.0%
ATTTATACTGTCAAACCCAA+GGG - chr4_1:17148993-17149012 Msa0538050:intron 30.0%
! ACAGGGATTATTCTTTCTTT+TGG + chr4_1:17149146-17149165 None:intergenic 30.0%
TTCAGTATAATACAGCTGTA+GGG + chr4_1:17149169-17149188 None:intergenic 30.0%
GAGTAAATTGAGAAAGAAAG+CGG + chr4_1:17149638-17149657 None:intergenic 30.0%
CCACTGTAATTGACAATATA+AGG + chr4_1:17149821-17149840 None:intergenic 30.0%
CCTTATATTGTCAATTACAG+TGG - chr4_1:17149818-17149837 Msa0538050:intron 30.0%
GAGAAGTTGTGTTAAAAGAA+AGG - chr4_1:17150021-17150040 Msa0538050:intron 30.0%
ATTGTCAATATGAAAAAGGG+AGG - chr4_1:17150360-17150379 Msa0538050:CDS 30.0%
! TAGGGCATCATTCATATAAT+TGG + chr4_1:17150498-17150517 None:intergenic 30.0%
!! TAATATCTATTGGCTTGTCT+AGG - chr4_1:17150685-17150704 Msa0538050:intron 30.0%
GTAAAATTTACACATTCCTG+TGG - chr4_1:17150889-17150908 Msa0538050:intron 30.0%
GCACATTAGGGAATATAATT+GGG + chr4_1:17150943-17150962 None:intergenic 30.0%
TGCACATTAGGGAATATAAT+TGG + chr4_1:17150944-17150963 None:intergenic 30.0%
GTTGGTATTTATGCACATTA+GGG + chr4_1:17150955-17150974 None:intergenic 30.0%
! GAGCCAAATTTTCATTATAG+TGG - chr4_1:17151003-17151022 Msa0538050:intron 30.0%
!! GTTGGTAACAGATTTAAAAC+TGG + chr4_1:17151071-17151090 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr4_1:17151721-17151740 None:intergenic 30.0%
! ATACAGTGTGACAAACATTT+TGG + chr4_1:17152120-17152139 None:intergenic 30.0%
ATATTACGAATCTGATTACC+CGG + chr4_1:17152463-17152482 None:intergenic 30.0%
AGAGAAGACTTACATAGTTA+GGG + chr4_1:17152880-17152899 None:intergenic 30.0%
GTCTTCTCTGTATATAAACT+CGG - chr4_1:17152891-17152910 Msa0538050:intron 30.0%
CCTTGTGTTATAAATGCAAT+TGG + chr4_1:17153334-17153353 None:intergenic 30.0%
CCAATTGCATTTATAACACA+AGG - chr4_1:17153331-17153350 Msa0538050:intron 30.0%
CCATAGTAATAGCTATTATG+GGG + chr4_1:17153461-17153480 None:intergenic 30.0%
AAGCAAAACAGAAGGATATT+TGG - chr4_1:17153541-17153560 Msa0538050:intron 30.0%
TTGTAGATTCACTTGATGTT+GGG + chr4_1:17153655-17153674 None:intergenic 30.0%
ATTGTAGATTCACTTGATGT+TGG + chr4_1:17153656-17153675 None:intergenic 30.0%
TCTGATCTTCATATCAAAGT+CGG + chr4_1:17153719-17153738 None:intergenic 30.0%
ATGGCTAATGTGAAAAACAT+AGG - chr4_1:17153767-17153786 Msa0538050:intron 30.0%
! ATTTTGTTACTGTCTATGGT+GGG + chr4_1:17153936-17153955 None:intergenic 30.0%
! AATTTTGTTACTGTCTATGG+TGG + chr4_1:17153937-17153956 None:intergenic 30.0%
! CCAAATTTTGTTACTGTCTA+TGG + chr4_1:17153940-17153959 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG - chr4_1:17153937-17153956 Msa0538050:CDS 30.0%
AAATTTGGGGAAAACTTCTA+TGG - chr4_1:17153952-17153971 Msa0538050:CDS 30.0%
!! GATAACTCAGCTTTTAACTA+TGG + chr4_1:17154016-17154035 None:intergenic 30.0%
! AAATTGGCTCAGCACAAATA+TGG + chr4_1:17145834-17145853 Msa0538040:CDS 35.0%
! CTCAATTTTGCTCTTCAAGA+TGG - chr4_1:17146143-17146162 Msa0538050:intron 35.0%
!!! AATTTTCGGTGTCTACATGT+CGG + chr4_1:17146375-17146394 Msa0538040:intron 35.0%
CAAGCTAATGCATGAATACA+AGG + chr4_1:17146679-17146698 Msa0538040:CDS 35.0%
AAATCAGAGTCATCCAATGT+TGG + chr4_1:17146726-17146745 Msa0538040:CDS 35.0%
! CTATTGACTATGTGAACACA+TGG - chr4_1:17146817-17146836 Msa0538050:three_prime_UTR 35.0%
ATGGATTCTTTGACTGTAGT+AGG - chr4_1:17146836-17146855 Msa0538050:three_prime_UTR 35.0%
GATTCTCTACCGTTGATATT+TGG - chr4_1:17146993-17147012 Msa0538050:intron 35.0%
GTGACTTTAGTGTGTACTTA+GGG - chr4_1:17147015-17147034 Msa0538050:three_prime_UTR 35.0%
TGACTTTAGTGTGTACTTAG+GGG - chr4_1:17147016-17147035 Msa0538050:three_prime_UTR 35.0%
! CCTTTCGATTGTCTACATTT+TGG + chr4_1:17147117-17147136 Msa0538040:CDS 35.0%
CCAAAATGTAGACAATCGAA+AGG - chr4_1:17147114-17147133 Msa0538050:three_prime_UTR 35.0%
!!! TCTGATCTTTTTTGTTCCTG+GGG - chr4_1:17147344-17147363 Msa0538050:three_prime_UTR 35.0%
! TAAGGTACTATTCTTTGCTC+TGG - chr4_1:17147406-17147425 Msa0538050:three_prime_UTR 35.0%
! ATTGACAGTTGACGTTTTTG+AGG - chr4_1:17147770-17147789 Msa0538050:three_prime_UTR 35.0%
! TTTTCTTACTATGCAAGCTC+TGG + chr4_1:17147932-17147951 None:intergenic 35.0%
!! GAAGTACTTGTTGCTTTGAA+AGG + chr4_1:17147974-17147993 None:intergenic 35.0%
!!! GAAGCTTTTCTGGTTTATCA+GGG + chr4_1:17148065-17148084 None:intergenic 35.0%
! GACTTTGAAGATGAGAATGA+AGG - chr4_1:17148394-17148413 Msa0538050:intron 35.0%
! TAGCTTGGTCTTTGATTCTT+TGG - chr4_1:17148779-17148798 Msa0538050:three_prime_UTR 35.0%
! TTGGTCTTTGATTCTTTGGT+AGG - chr4_1:17148783-17148802 Msa0538050:three_prime_UTR 35.0%
AATCATACTAAGAACACCTG+AGG - chr4_1:17149021-17149040 Msa0538050:intron 35.0%
CTTCAGTATAATACAGCTGT+AGG + chr4_1:17149170-17149189 None:intergenic 35.0%
!! TGACTTTTGATAGCCTTTGT+TGG - chr4_1:17149277-17149296 Msa0538050:intron 35.0%
AACTCACATTTCACCAACAA+AGG + chr4_1:17149293-17149312 None:intergenic 35.0%
AACACGTTAATTATGTGCAC+TGG - chr4_1:17149348-17149367 Msa0538050:intron 35.0%
!! AATAAAAGTGTTGGGGTTGA+TGG + chr4_1:17149441-17149460 None:intergenic 35.0%
ATCTTGAGCTAGATACACTA+CGG - chr4_1:17149463-17149482 Msa0538050:intron 35.0%
AAGCGGTATTGCAAATCTTT+GGG + chr4_1:17149621-17149640 None:intergenic 35.0%
AAAGCGGTATTGCAAATCTT+TGG + chr4_1:17149622-17149641 None:intergenic 35.0%
TTACTCCAGTGTTCTACATT+CGG - chr4_1:17149652-17149671 Msa0538050:intron 35.0%
TCGGATCAGAGATTATTCAA+AGG - chr4_1:17149671-17149690 Msa0538050:intron 35.0%
AGGGACTATTCAATAGAGAA+GGG + chr4_1:17149701-17149720 None:intergenic 35.0%
TAGGGACTATTCAATAGAGA+AGG + chr4_1:17149702-17149721 None:intergenic 35.0%
TATTAACACCAGATCTTGCA+AGG - chr4_1:17150083-17150102 Msa0538050:intron 35.0%
AAAATCTTCCTTGCAAGATC+TGG + chr4_1:17150094-17150113 None:intergenic 35.0%
! TGCTTACATACTTCCCTTTT+TGG - chr4_1:17150156-17150175 Msa0538050:CDS 35.0%
AATTACTCCCATGCCAAAAA+GGG + chr4_1:17150172-17150191 None:intergenic 35.0%
TAATTACTCCCATGCCAAAA+AGG + chr4_1:17150173-17150192 None:intergenic 35.0%
GAGTAATTAGTAAGGGAAAG+AGG - chr4_1:17150184-17150203 Msa0538050:intron 35.0%
TAGTAAGGGAAAGAGGAATA+TGG - chr4_1:17150191-17150210 Msa0538050:intron 35.0%
TGTGACTTACTTCAAGTCAA+AGG + chr4_1:17150255-17150274 None:intergenic 35.0%
TGTATCACCTGAAAAAAGCA+GGG - chr4_1:17150325-17150344 Msa0538050:CDS 35.0%
TACACAAGCATAAGAACCAT+CGG + chr4_1:17150571-17150590 None:intergenic 35.0%
TCATGAACTTACTTCACCAA+GGG + chr4_1:17150616-17150635 None:intergenic 35.0%
TTCATGAACTTACTTCACCA+AGG + chr4_1:17150617-17150636 None:intergenic 35.0%
!! TCTCTAGAATTTCTACGAAG+AGG - chr4_1:17150758-17150777 Msa0538050:intron 35.0%
AATTTCTACGAAGAGGCTAT+AGG - chr4_1:17150765-17150784 Msa0538050:intron 35.0%
ATTTCTACGAAGAGGCTATA+GGG - chr4_1:17150766-17150785 Msa0538050:intron 35.0%
! GGTTGGTATTTATGCACATT+AGG + chr4_1:17150956-17150975 None:intergenic 35.0%
! TTAAAACTGGACTAGAGACA+TGG + chr4_1:17151058-17151077 None:intergenic 35.0%
ACTGCAATATCACAAGATGT+TGG + chr4_1:17151089-17151108 None:intergenic 35.0%
!! ATTTGGAAGTATCATCTGCA+TGG - chr4_1:17151136-17151155 Msa0538050:intron 35.0%
! CTGTGTTTTATCACACACAA+TGG - chr4_1:17151191-17151210 Msa0538050:intron 35.0%
! ACTTTTGCCAAAGAAATACG+AGG - chr4_1:17151288-17151307 Msa0538050:intron 35.0%
CCAAGTTTAACACATCTACA+TGG + chr4_1:17151553-17151572 None:intergenic 35.0%
CCATGTAGATGTGTTAAACT+TGG - chr4_1:17151550-17151569 Msa0538050:intron 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr4_1:17151795-17151814 Msa0538050:intron 35.0%
GTACAGTAAGTGTAAACAAG+AGG - chr4_1:17151839-17151858 Msa0538050:intron 35.0%
TTGGGACCGAAAACTATAAA+GGG - chr4_1:17151931-17151950 Msa0538050:intron 35.0%
!!! TTTTTTTCATTGGCCCAAGT+CGG - chr4_1:17151964-17151983 Msa0538050:intron 35.0%
!! TAGGCTTGTTGAATTTCGAT+AGG + chr4_1:17152070-17152089 None:intergenic 35.0%
!! GTGGTTAGCCTATAAATACA+TGG + chr4_1:17152096-17152115 None:intergenic 35.0%
TACAAATAGTGTCATGCTGA+AGG - chr4_1:17152180-17152199 Msa0538050:intron 35.0%
TGAAGAAGTTCTTGCTTATG+AGG + chr4_1:17152246-17152265 None:intergenic 35.0%
ATACAACAGTCTATGCTTCT+CGG + chr4_1:17152377-17152396 None:intergenic 35.0%
CCTCAAAGTTCGTCAAAATT+TGG + chr4_1:17152405-17152424 None:intergenic 35.0%
!! CCAAATTTTGACGAACTTTG+AGG - chr4_1:17152402-17152421 Msa0538050:intron 35.0%
TATTACGAATCTGATTACCC+GGG + chr4_1:17152462-17152481 None:intergenic 35.0%
CAATCTATATTCAAGCTGCA+TGG + chr4_1:17152527-17152546 None:intergenic 35.0%
TCCATTGTTGCGAATAGAAA+CGG - chr4_1:17152559-17152578 Msa0538050:intron 35.0%
TAGACACATACATAGTAGAC+AGG + chr4_1:17152598-17152617 None:intergenic 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG + chr4_1:17152759-17152778 None:intergenic 35.0%
ATGAACAACATCTCATCAAC+TGG - chr4_1:17152846-17152865 Msa0538050:intron 35.0%
AAGACTTACATAGTTAGGGA+AGG + chr4_1:17152876-17152895 None:intergenic 35.0%
CAGAGAAGACTTACATAGTT+AGG + chr4_1:17152881-17152900 None:intergenic 35.0%
TGCAATGAGAAATCTCAGAA+AGG - chr4_1:17153042-17153061 Msa0538050:intron 35.0%
CCCCATAATAGCTATTACTA+TGG - chr4_1:17153458-17153477 Msa0538050:intron 35.0%
!! TTTGCTTTTCACAGTACACT+TGG + chr4_1:17153528-17153547 None:intergenic 35.0%
ACTGTGAAAAGCAAAACAGA+AGG - chr4_1:17153533-17153552 Msa0538050:intron 35.0%
! TTTTCACATTAGCCATGTAG+AGG + chr4_1:17153763-17153782 None:intergenic 35.0%
TGTTATAATGAGGACTCATG+TGG - chr4_1:17153856-17153875 Msa0538050:CDS 35.0%
! TTTTGTTACTGTCTATGGTG+GGG + chr4_1:17153935-17153954 None:intergenic 35.0%
GTTCAAGTAAGCATATACCA+GGG + chr4_1:17154099-17154118 None:intergenic 35.0%
AGTTCAAGTAAGCATATACC+AGG + chr4_1:17154100-17154119 None:intergenic 35.0%
TAGCATTGTGTTGTGTTGTG+TGG + chr4_1:17145862-17145881 Msa0538040:CDS 40.0%
CAACACAATGCTACTATCCA+TGG - chr4_1:17145869-17145888 Msa0538050:three_prime_UTR 40.0%
AATGCTACTATCCATGGCTA+TGG - chr4_1:17145875-17145894 Msa0538050:three_prime_UTR 40.0%
GATGTGAAGGAAGAAAAGTG+AGG + chr4_1:17145923-17145942 Msa0538040:CDS 40.0%
!! GATAGTGGAGAAAGATGTGA+AGG + chr4_1:17145936-17145955 Msa0538040:CDS 40.0%
GAAGAAGGTGAAGAAGATAG+TGG + chr4_1:17145951-17145970 Msa0538040:CDS 40.0%
TTAGGATCGAAACCACGATT+TGG + chr4_1:17146059-17146078 Msa0538040:intron 40.0%
GCGAGAACTTCATAAGACTT+AGG + chr4_1:17146104-17146123 Msa0538040:intron 40.0%
TGTCGTATTACTCAGTGTAG+TGG - chr4_1:17146435-17146454 Msa0538050:intron 40.0%
GTACATATCACGGACACTTA+CGG + chr4_1:17146478-17146497 Msa0538040:CDS 40.0%
!! GCTGTTGGGTATTGATTCTA+TGG - chr4_1:17146787-17146806 Msa0538050:three_prime_UTR 40.0%
GGTGACTTTAGTGTGTACTT+AGG - chr4_1:17147014-17147033 Msa0538050:three_prime_UTR 40.0%
CAAGAACGTTGAGTTTAGGA+CGG + chr4_1:17147154-17147173 Msa0538040:CDS 40.0%
AGAGCAAGAACGTTGAGTTT+AGG + chr4_1:17147158-17147177 Msa0538040:CDS 40.0%
AAGTAGGCATAGATGAACTG+AGG + chr4_1:17147642-17147661 Msa0538040:CDS 40.0%
TGCCAACATTCAACTTGTCT+TGG - chr4_1:17147873-17147892 Msa0538050:three_prime_UTR 40.0%
! AGCCAAGACAAGTTGAATGT+TGG + chr4_1:17147878-17147897 None:intergenic 40.0%
GGCTGTTGTAAAAAAGCTAC+AGG - chr4_1:17147894-17147913 Msa0538050:three_prime_UTR 40.0%
TCCGAGATGTCACTAGATTT+GGG - chr4_1:17148022-17148041 Msa0538050:three_prime_UTR 40.0%
TCCCAAATCTAGTGACATCT+CGG + chr4_1:17148026-17148045 None:intergenic 40.0%
!!! CGAAGCTTTTCTGGTTTATC+AGG + chr4_1:17148066-17148085 None:intergenic 40.0%
!! AAGGTTGATGGCCTTACTAT+AGG - chr4_1:17148301-17148320 Msa0538050:intron 40.0%
CATCTAAGGAGCCTATAGTA+AGG + chr4_1:17148315-17148334 None:intergenic 40.0%
GATCTGAAAAATGAAGCCAC+AGG + chr4_1:17148352-17148371 None:intergenic 40.0%
! AGAATGAAGGTTAGCTCTTG+CGG - chr4_1:17148407-17148426 Msa0538050:intron 40.0%
ATGAATATGTAGAGCGATGG+AGG + chr4_1:17148622-17148641 None:intergenic 40.0%
AATAGCAGTACACGTGAACT+TGG - chr4_1:17148643-17148662 Msa0538050:three_prime_UTR 40.0%
ATGAAACCTTCTAATGGCAG+AGG + chr4_1:17148696-17148715 None:intergenic 40.0%
AACACCTGAGGAACAAAAGA+GGG - chr4_1:17149033-17149052 Msa0538050:intron 40.0%
AGCTACCGGAAAATTGATAG+AGG - chr4_1:17149056-17149075 Msa0538050:intron 40.0%
! GCACACCTCTATCAATTTTC+CGG + chr4_1:17149064-17149083 None:intergenic 40.0%
ATAATACAGCTGTAGGGACA+GGG + chr4_1:17149163-17149182 None:intergenic 40.0%
TATAATACAGCTGTAGGGAC+AGG + chr4_1:17149164-17149183 None:intergenic 40.0%
! GATCAAGTTGTGTGGTCAAT+TGG + chr4_1:17149206-17149225 None:intergenic 40.0%
TACTATTTACTGCGGTCACT+GGG + chr4_1:17149234-17149253 None:intergenic 40.0%
TTACTATTTACTGCGGTCAC+TGG + chr4_1:17149235-17149254 None:intergenic 40.0%
GTAAAACTTGATGTAGGCTC+TGG - chr4_1:17149251-17149270 Msa0538050:CDS 40.0%
GTCTAAGTCCTTAACTACGT+CGG - chr4_1:17149528-17149547 Msa0538050:intron 40.0%
ATAAGTGTCCGACGTAGTTA+AGG + chr4_1:17149539-17149558 None:intergenic 40.0%
!! TGAATTCGCAGTGCTGATTT+AGG - chr4_1:17149579-17149598 Msa0538050:intron 40.0%
GGTATTGCAAATCTTTGGGT+GGG + chr4_1:17149617-17149636 None:intergenic 40.0%
GGACTATTCAATAGAGAAGG+GGG + chr4_1:17149699-17149718 None:intergenic 40.0%
GGGACTATTCAATAGAGAAG+GGG + chr4_1:17149700-17149719 None:intergenic 40.0%
!! ACATACTTCCCTTTTTGGCA+TGG - chr4_1:17150161-17150180 Msa0538050:CDS 40.0%
!! CATACTTCCCTTTTTGGCAT+GGG - chr4_1:17150162-17150181 Msa0538050:intron 40.0%
TGGCATGGGAGTAATTAGTA+AGG - chr4_1:17150176-17150195 Msa0538050:intron 40.0%
GGCATGGGAGTAATTAGTAA+GGG - chr4_1:17150177-17150196 Msa0538050:intron 40.0%
CCACGTCAAATGAGAAATAG+AGG + chr4_1:17150225-17150244 None:intergenic 40.0%
! CCTCTATTTCTCATTTGACG+TGG - chr4_1:17150222-17150241 Msa0538050:intron 40.0%
CTGTATCACCTGAAAAAAGC+AGG - chr4_1:17150324-17150343 Msa0538050:CDS 40.0%
!!! ATCTATGCCCTGCTTTTTTC+AGG + chr4_1:17150335-17150354 None:intergenic 40.0%
AGGCCAAAGAAGAATTGTTG+AGG - chr4_1:17150705-17150724 Msa0538050:intron 40.0%
GGCCAAAGAAGAATTGTTGA+GGG - chr4_1:17150706-17150725 Msa0538050:intron 40.0%
GACCCTCAACAATTCTTCTT+TGG + chr4_1:17150711-17150730 None:intergenic 40.0%
CTTGGACTTCAAGAAGAAGA+GGG - chr4_1:17150731-17150750 Msa0538050:intron 40.0%
! TGCTTGTGTCCTTTTTGCTA+TGG - chr4_1:17150829-17150848 Msa0538050:intron 40.0%
GTGGGAAGAAGATTCTGATT+TGG - chr4_1:17151119-17151138 Msa0538050:intron 40.0%
TGCTCATATGCAGAGAAAGA+AGG - chr4_1:17151222-17151241 Msa0538050:intron 40.0%
CCTTTGTCCTCGTATTTCTT+TGG + chr4_1:17151298-17151317 None:intergenic 40.0%
CCAAAGAAATACGAGGACAA+AGG - chr4_1:17151295-17151314 Msa0538050:intron 40.0%
! GGCAACTTTTATGATGCCTT+AGG - chr4_1:17151316-17151335 Msa0538050:CDS 40.0%
TTGCAATTCAAGACAGCCTA+AGG + chr4_1:17151335-17151354 None:intergenic 40.0%
CTTGGGACCGAAAACTATAA+AGG - chr4_1:17151930-17151949 Msa0538050:intron 40.0%
!!! TTTTTTCATTGGCCCAAGTC+GGG - chr4_1:17151965-17151984 Msa0538050:intron 40.0%
GCCTAGAGCCATGTATTTAT+AGG - chr4_1:17152085-17152104 Msa0538050:CDS 40.0%
GCCTATAAATACATGGCTCT+AGG + chr4_1:17152089-17152108 None:intergenic 40.0%
!! GTGTGACAAACATTTTGGTG+TGG + chr4_1:17152115-17152134 None:intergenic 40.0%
!! TCATTGAGAGCACTGAAATC+AGG - chr4_1:17152273-17152292 Msa0538050:intron 40.0%
TCTATATTCAAGCTGCATGG+AGG + chr4_1:17152524-17152543 None:intergenic 40.0%
TTCGCAACAATGGAGAACAT+GGG + chr4_1:17152553-17152572 None:intergenic 40.0%
ATTCGCAACAATGGAGAACA+TGG + chr4_1:17152554-17152573 None:intergenic 40.0%
TCCGTTTCTATTCGCAACAA+TGG + chr4_1:17152563-17152582 None:intergenic 40.0%
TACCTCACTCATAGCTTTCA+CGG - chr4_1:17152668-17152687 Msa0538050:intron 40.0%
! TTCACGGTTCTTGTTGATGA+TGG - chr4_1:17152684-17152703 Msa0538050:intron 40.0%
TGGTGAAGAGTTGCTAACAT+GGG + chr4_1:17152739-17152758 None:intergenic 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG + chr4_1:17152771-17152790 None:intergenic 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG + chr4_1:17152775-17152794 None:intergenic 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG + chr4_1:17152813-17152832 None:intergenic 40.0%
GAGATGTTGTTCATCATTCG+TGG + chr4_1:17152840-17152859 None:intergenic 40.0%
AGGGGTCGATGAAGAAAATT+TGG + chr4_1:17153161-17153180 None:intergenic 40.0%
! AATTTTCTTCATCGACCCCT+CGG - chr4_1:17153161-17153180 Msa0538050:intron 40.0%
TGGAGGAAATGAGGATCAAA+AGG + chr4_1:17153279-17153298 None:intergenic 40.0%
! AACCGACATTGATTGAAGGT+AGG - chr4_1:17153303-17153322 Msa0538050:intron 40.0%
GACCTACCTTCAATCAATGT+CGG + chr4_1:17153308-17153327 None:intergenic 40.0%
TCTTCTGATTGGAAACATGC+AGG + chr4_1:17153424-17153443 None:intergenic 40.0%
ATGGAAAACAAAACCTCTCC+AGG - chr4_1:17153477-17153496 Msa0538050:intron 40.0%
TGGAAAACAAAACCTCTCCA+GGG - chr4_1:17153478-17153497 Msa0538050:intron 40.0%
TTTCACAGTACACTTGGTCA+GGG + chr4_1:17153522-17153541 None:intergenic 40.0%
! TTTTCACAGTACACTTGGTC+AGG + chr4_1:17153523-17153542 None:intergenic 40.0%
TGAAGATCAGACACACGATA+TGG - chr4_1:17153728-17153747 Msa0538050:intron 40.0%
GAAGATCAGACACACGATAT+GGG - chr4_1:17153729-17153748 Msa0538050:intron 40.0%
ATATACCAGGGTATGACAGT+TGG + chr4_1:17154087-17154106 None:intergenic 40.0%
! GTGTTGTGTGGCACTGAAAT+TGG + chr4_1:17145850-17145869 Msa0538040:CDS 45.0%
AGATGACATAGCCATAGCCA+TGG + chr4_1:17145889-17145908 Msa0538040:CDS 45.0%
GGAAGAAAAGTGAGGTTGTG+AGG + chr4_1:17145915-17145934 Msa0538040:CDS 45.0%
TCTTCATCAGAGCCAAATCG+TGG - chr4_1:17146044-17146063 Msa0538050:three_prime_UTR 45.0%
CGTGGTTTCGATCCTAAATC+AGG - chr4_1:17146062-17146081 Msa0538050:intron 45.0%
GAAGAAATGTTGCTGGGCAA+GGG + chr4_1:17147383-17147402 Msa0538040:CDS 45.0%
TGAAGAAATGTTGCTGGGCA+AGG + chr4_1:17147384-17147403 Msa0538040:CDS 45.0%
! TCGCATGCCTTTGTTTACCA+TGG - chr4_1:17147584-17147603 Msa0538050:three_prime_UTR 45.0%
CTCCGAGATGTCACTAGATT+TGG - chr4_1:17148021-17148040 Msa0538050:three_prime_UTR 45.0%
! AGCTGCTTTGAACAACTGAG+AGG + chr4_1:17148091-17148110 None:intergenic 45.0%
TCAGTTGTTCAAAGCAGCTC+TGG - chr4_1:17148092-17148111 Msa0538050:intron 45.0%
TCCTTAGATGATATCCCTGC+AGG - chr4_1:17148325-17148344 Msa0538050:intron 45.0%
TCCTGCAGGGATATCATCTA+AGG + chr4_1:17148329-17148348 None:intergenic 45.0%
! GAATGAAGGTTAGCTCTTGC+GGG - chr4_1:17148408-17148427 Msa0538050:intron 45.0%
! TTCTTAGAAGTGCAGGTCGT+TGG - chr4_1:17148584-17148603 Msa0538050:three_prime_UTR 45.0%
ACTCACTCTTAGCTCCTGAT+TGG - chr4_1:17148940-17148959 Msa0538050:intron 45.0%
CTCACTCTTAGCTCCTGATT+GGG - chr4_1:17148941-17148960 Msa0538050:intron 45.0%
TCACTCTTAGCTCCTGATTG+GGG - chr4_1:17148942-17148961 Msa0538050:intron 45.0%
!! TTAGCTTGTACACCCCAATC+AGG + chr4_1:17148957-17148976 None:intergenic 45.0%
GAACACCTGAGGAACAAAAG+AGG - chr4_1:17149032-17149051 Msa0538050:intron 45.0%
!! AGTGCTGATTTAGGCCTTCT+AGG - chr4_1:17149588-17149607 Msa0538050:intron 45.0%
CGGTATTGCAAATCTTTGGG+TGG + chr4_1:17149618-17149637 None:intergenic 45.0%
CTGATCCGAATGTAGAACAC+TGG + chr4_1:17149660-17149679 None:intergenic 45.0%
ATATAGCTGTACCAGGGTAC+TGG + chr4_1:17149856-17149875 None:intergenic 45.0%
! AGCTATCTGGTGTTAACTGC+TGG + chr4_1:17150431-17150450 None:intergenic 45.0%
TCATAAATCGTTCAGGTCCC+TGG - chr4_1:17150526-17150545 Msa0538050:CDS 45.0%
GTGATGCTTAAGCAAACCGA+TGG - chr4_1:17150552-17150571 Msa0538050:intron 45.0%
GAAGAATTGTTGAGGGTCCT+TGG - chr4_1:17150713-17150732 Msa0538050:intron 45.0%
CCTCTTCTTCTTGAAGTCCA+AGG + chr4_1:17150733-17150752 None:intergenic 45.0%
CCTTGGACTTCAAGAAGAAG+AGG - chr4_1:17150730-17150749 Msa0538050:intron 45.0%
TGATATTGCAGTCAAGCACG+TGG - chr4_1:17151097-17151116 Msa0538050:intron 45.0%
!! TGGAAGTATCATCTGCATGG+CGG - chr4_1:17151139-17151158 Msa0538050:intron 45.0%
CCTCTAGCAATGTTCTACTC+AGG + chr4_1:17151166-17151185 None:intergenic 45.0%
CCTGAGTAGAACATTGCTAG+AGG - chr4_1:17151163-17151182 Msa0538050:intron 45.0%
GAGTAGAACATTGCTAGAGG+AGG - chr4_1:17151166-17151185 Msa0538050:intron 45.0%
CGCTGCAACGTAATTCTAAG+AGG + chr4_1:17151748-17151767 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG - chr4_1:17151753-17151772 Msa0538050:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG - chr4_1:17151754-17151773 Msa0538050:intron 45.0%
CGAATTTACGTTGAGTCCCA+AGG + chr4_1:17151773-17151792 None:intergenic 45.0%
GTATTTGTCAGCTGCAGTGT+TGG + chr4_1:17152146-17152165 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG - chr4_1:17152281-17152300 Msa0538050:intron 45.0%
! GCACTGAAATCAGGTTCTGA+GGG - chr4_1:17152282-17152301 Msa0538050:intron 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG - chr4_1:17152288-17152307 Msa0538050:intron 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG - chr4_1:17152289-17152308 Msa0538050:intron 45.0%
TTCACCAGCTCTCTTGAACT+TGG - chr4_1:17152315-17152334 Msa0538050:intron 45.0%
AGTACCAAGTTCAAGAGAGC+TGG + chr4_1:17152322-17152341 None:intergenic 45.0%
! TTTGACGAACTTTGAGGACC+CGG - chr4_1:17152408-17152427 Msa0538050:intron 45.0%
GGGAAGTGATGATTCTGCAA+GGG + chr4_1:17152442-17152461 None:intergenic 45.0%
CTTGCAGAATCATCACTTCC+CGG - chr4_1:17152441-17152460 Msa0538050:intron 45.0%
TTGCAGAATCATCACTTCCC+GGG - chr4_1:17152442-17152461 Msa0538050:intron 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG + chr4_1:17152512-17152531 None:intergenic 45.0%
!! GGCATTTGCTTTAGAAGCAG+AGG + chr4_1:17152646-17152665 None:intergenic 45.0%
GAAAGCTATGAGTGAGGTAG+AGG + chr4_1:17152667-17152686 None:intergenic 45.0%
AACCGTGAAAGCTATGAGTG+AGG + chr4_1:17152673-17152692 None:intergenic 45.0%
AGAGTTGCTAACATGGGCAT+TGG + chr4_1:17152733-17152752 None:intergenic 45.0%
GTGGTGAAGAGTTGCTAACA+TGG + chr4_1:17152740-17152759 None:intergenic 45.0%
AGAAGTGGCTTCTTCAACAG+AGG + chr4_1:17152786-17152805 None:intergenic 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG + chr4_1:17152801-17152820 None:intergenic 45.0%
!! GAGAGTGTTACTACAGATGG+TGG + chr4_1:17152810-17152829 None:intergenic 45.0%
TCGTCCATGTTAGCAAAGAG+AGG - chr4_1:17152948-17152967 Msa0538050:intron 45.0%
GGTTCCTCTCTTTGCTAACA+TGG + chr4_1:17152955-17152974 None:intergenic 45.0%
! ATTTTCTTCATCGACCCCTC+GGG - chr4_1:17153162-17153181 Msa0538050:intron 45.0%
GGGTGTTCAACCACTTGTAT+TGG - chr4_1:17153182-17153201 Msa0538050:intron 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG + chr4_1:17153299-17153318 None:intergenic 45.0%
! GACGAACCGACATTGATTGA+AGG - chr4_1:17153299-17153318 Msa0538050:intron 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG + chr4_1:17153435-17153454 None:intergenic 45.0%
AAACAAAACCTCTCCAGGGT+AGG - chr4_1:17153482-17153501 Msa0538050:intron 45.0%
TTCACAGTACACTTGGTCAG+GGG + chr4_1:17153521-17153540 None:intergenic 45.0%
GGTGGGGACTTCAGAATTTA+AGG + chr4_1:17153919-17153938 None:intergenic 45.0%
TTTCTCCAACTGTCATACCC+TGG - chr4_1:17154079-17154098 Msa0538050:CDS 45.0%
TGTTGCGGTTGTTGAGTGTG+TGG - chr4_1:17146598-17146617 Msa0538050:intron 50.0%
! CGTTGAGTTTAGGACGGAGA+GGG + chr4_1:17147148-17147167 Msa0538040:CDS 50.0%
! ACGTTGAGTTTAGGACGGAG+AGG + chr4_1:17147149-17147168 Msa0538040:CDS 50.0%
! TGCTTGCGGCTTTTATGTGC+TGG - chr4_1:17147313-17147332 Msa0538050:three_prime_UTR 50.0%
! GCTTGCGGCTTTTATGTGCT+GGG - chr4_1:17147314-17147333 Msa0538050:three_prime_UTR 50.0%
GTTCCTGGGGTTATGTATGC+AGG - chr4_1:17147357-17147376 Msa0538050:three_prime_UTR 50.0%
! TGAGAGGCTCGAAGCTTTTC+TGG + chr4_1:17148075-17148094 None:intergenic 50.0%
! GGTTAGCTCTTGCGGGAAAA+TGG - chr4_1:17148415-17148434 Msa0538050:intron 50.0%
ATGGTGCCTCTGCCATTAGA+AGG - chr4_1:17148687-17148706 Msa0538050:three_prime_UTR 50.0%
! AGCTCCCTCTTTTGTTCCTC+AGG + chr4_1:17149040-17149059 None:intergenic 50.0%
GGAACAAAAGAGGGAGCTAC+CGG - chr4_1:17149042-17149061 Msa0538050:intron 50.0%
! GGGATAGGGATCAAGTTGTG+TGG + chr4_1:17149214-17149233 None:intergenic 50.0%
TTACTGCGGTCACTGGGATA+GGG + chr4_1:17149228-17149247 None:intergenic 50.0%
TTTACTGCGGTCACTGGGAT+AGG + chr4_1:17149229-17149248 None:intergenic 50.0%
TGCTTAAGCATCACCTGCCA+GGG + chr4_1:17150546-17150565 None:intergenic 50.0%
TTGCTTAAGCATCACCTGCC+AGG + chr4_1:17150547-17150566 None:intergenic 50.0%
AAGATGCAGTGCAGAACCAC+AGG + chr4_1:17150908-17150927 None:intergenic 50.0%
TATTGCAGTCAAGCACGTGG+TGG - chr4_1:17151100-17151119 Msa0538050:intron 50.0%
ATTGCAGTCAAGCACGTGGT+GGG - chr4_1:17151101-17151120 Msa0538050:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG + chr4_1:17151980-17151999 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG + chr4_1:17151981-17152000 None:intergenic 50.0%
ATGCTGAAGGACAATCGCAG+CGG - chr4_1:17152193-17152212 Msa0538050:intron 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG + chr4_1:17152357-17152376 None:intergenic 50.0%
! TGATGATTCTGCAAGGGCGT+TGG + chr4_1:17152436-17152455 None:intergenic 50.0%
CGGGAAGTGATGATTCTGCA+AGG + chr4_1:17152443-17152462 None:intergenic 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG + chr4_1:17152496-17152515 None:intergenic 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG + chr4_1:17152500-17152519 None:intergenic 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG + chr4_1:17152506-17152525 None:intergenic 50.0%
!!! GGCAAGCTTGCTGCAGATTT+TGG - chr4_1:17152705-17152724 Msa0538050:intron 50.0%
ACAAGTGGTTGAACACCCGA+GGG + chr4_1:17153180-17153199 None:intergenic 50.0%
TACAAGTGGTTGAACACCCG+AGG + chr4_1:17153181-17153200 None:intergenic 50.0%
GACGCTACGACCAATACAAG+TGG + chr4_1:17153195-17153214 None:intergenic 50.0%
AGCGTCTGACTCTTTCCCTT+AGG - chr4_1:17153209-17153228 Msa0538050:intron 50.0%
CTGACTCTTTCCCTTAGGTC+CGG - chr4_1:17153214-17153233 Msa0538050:intron 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG + chr4_1:17153296-17153315 None:intergenic 50.0%
CTTCTGACTAGTACCTACCC+TGG + chr4_1:17153498-17153517 None:intergenic 50.0%
TGATATCCCTGCAGGACCTG+TGG - chr4_1:17148333-17148352 Msa0538050:intron 55.0%
ATGAAGCCACAGGTCCTGCA+GGG + chr4_1:17148342-17148361 None:intergenic 55.0%
AATGAAGCCACAGGTCCTGC+AGG + chr4_1:17148343-17148362 None:intergenic 55.0%
CTTTGGGTGGGAAGCCTAGA+AGG + chr4_1:17149605-17149624 None:intergenic 55.0%
AAATCGTTCAGGTCCCTGGC+AGG - chr4_1:17150530-17150549 Msa0538050:CDS 55.0%
AGTGCAACTCGCTTCACCCT+TGG - chr4_1:17150597-17150616 Msa0538050:intron 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG + chr4_1:17152430-17152449 None:intergenic 55.0%
CAAGTGGTTGAACACCCGAG+GGG + chr4_1:17153179-17153198 None:intergenic 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG - chr4_1:17153217-17153236 Msa0538050:intron 55.0%
CTTGCTTCCTCCGGACCTAA+GGG + chr4_1:17153227-17153246 None:intergenic 55.0%
GCATCATCGCTTGCTTCCTC+CGG + chr4_1:17153236-17153255 None:intergenic 55.0%
GCGATGATGCATCCACTGCT+CGG - chr4_1:17153246-17153265 Msa0538050:intron 55.0%
CGGTTCGTCTGGAGGAAATG+AGG + chr4_1:17153288-17153307 None:intergenic 55.0%
GACTAGTACCTACCCTGGAG+AGG + chr4_1:17153493-17153512 None:intergenic 55.0%
TGGGCACATGCACCTCTACA+TGG - chr4_1:17153748-17153767 Msa0538050:intron 55.0%
GGGCCTGCATACATAACCCC+AGG + chr4_1:17147363-17147382 Msa0538040:CDS 60.0%
GCTGTGTTTCGCCAGTACCC+TGG - chr4_1:17149842-17149861 Msa0538050:intron 60.0%
TCATTGGCCCAAGTCGGGAC+CGG - chr4_1:17151970-17151989 Msa0538050:intron 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG + chr4_1:17152429-17152448 None:intergenic 60.0%
AAGGCGAAGGCGAAGGAAGG+AGG + chr4_1:17152493-17152512 None:intergenic 60.0%
GCTTGCTTCCTCCGGACCTA+AGG + chr4_1:17153228-17153247 None:intergenic 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG + chr4_1:17153261-17153280 None:intergenic 60.0%
GACAATCGCAGCGGCAGCAG+TGG - chr4_1:17152202-17152221 Msa0538050:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17145821 17154162 17145821 ID=Msa0538050;Name=Msa0538050
chr4_1 mRNA 17145821 17154162 17145821 ID=Msa0538050-mRNA-1;Parent=Msa0538050;Name=Msa0538050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=55|1|1|1|0.73|0.68|16|1996|382
chr4_1 exon 17145821 17146064 17145821 ID=Msa0538050-mRNA-1:exon:5120;Parent=Msa0538050-mRNA-1
chr4_1 exon 17146448 17146559 17146448 ID=Msa0538050-mRNA-1:exon:5119;Parent=Msa0538050-mRNA-1
chr4_1 exon 17146655 17146893 17146655 ID=Msa0538050-mRNA-1:exon:5118;Parent=Msa0538050-mRNA-1
chr4_1 exon 17147010 17148081 17147010 ID=Msa0538050-mRNA-1:exon:5117;Parent=Msa0538050-mRNA-1
chr4_1 exon 17148487 17148875 17148487 ID=Msa0538050-mRNA-1:exon:5116;Parent=Msa0538050-mRNA-1
chr4_1 exon 17149196 17149276 17149196 ID=Msa0538050-mRNA-1:exon:5115;Parent=Msa0538050-mRNA-1
chr4_1 exon 17149360 17149442 17149360 ID=Msa0538050-mRNA-1:exon:5114;Parent=Msa0538050-mRNA-1
chr4_1 exon 17150120 17150180 17150120 ID=Msa0538050-mRNA-1:exon:5113;Parent=Msa0538050-mRNA-1
chr4_1 exon 17150291 17150393 17150291 ID=Msa0538050-mRNA-1:exon:5112;Parent=Msa0538050-mRNA-1
chr4_1 exon 17150499 17150557 17150499 ID=Msa0538050-mRNA-1:exon:5111;Parent=Msa0538050-mRNA-1
chr4_1 exon 17151299 17151384 17151299 ID=Msa0538050-mRNA-1:exon:5110;Parent=Msa0538050-mRNA-1
chr4_1 exon 17151568 17151679 17151568 ID=Msa0538050-mRNA-1:exon:5109;Parent=Msa0538050-mRNA-1
chr4_1 exon 17151864 17151926 17151864 ID=Msa0538050-mRNA-1:exon:5108;Parent=Msa0538050-mRNA-1
chr4_1 exon 17152041 17152133 17152041 ID=Msa0538050-mRNA-1:exon:5107;Parent=Msa0538050-mRNA-1
chr4_1 exon 17152574 17152604 17152574 ID=Msa0538050-mRNA-1:exon:5106;Parent=Msa0538050-mRNA-1
chr4_1 exon 17153791 17154162 17153791 ID=Msa0538050-mRNA-1:exon:5105;Parent=Msa0538050-mRNA-1
chr4_1 five_prime_UTR 17154108 17154162 17154108 ID=Msa0538050-mRNA-1:five_prime_utr;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17153791 17154107 17153791 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17152574 17152604 17152574 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17152041 17152133 17152041 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17151864 17151926 17151864 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17151568 17151679 17151568 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17151299 17151384 17151299 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17150499 17150557 17150499 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17150291 17150393 17150291 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17150120 17150180 17150120 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17149360 17149442 17149360 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17149196 17149276 17149196 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 CDS 17148816 17148875 17148816 ID=Msa0538050-mRNA-1:cds;Parent=Msa0538050-mRNA-1
chr4_1 three_prime_UTR 17148487 17148815 17148487 ID=Msa0538050-mRNA-1:three_prime_utr;Parent=Msa0538050-mRNA-1
chr4_1 three_prime_UTR 17147010 17148081 17147010 ID=Msa0538050-mRNA-1:three_prime_utr;Parent=Msa0538050-mRNA-1
chr4_1 three_prime_UTR 17146655 17146893 17146655 ID=Msa0538050-mRNA-1:three_prime_utr;Parent=Msa0538050-mRNA-1
chr4_1 three_prime_UTR 17146448 17146559 17146448 ID=Msa0538050-mRNA-1:three_prime_utr;Parent=Msa0538050-mRNA-1
chr4_1 three_prime_UTR 17145821 17146064 17145821 ID=Msa0538050-mRNA-1:three_prime_utr;Parent=Msa0538050-mRNA-1
Gene Sequence

>Msa0538050

ATGCTACTATCCATGGCTATGGCTATGTCATCTCTACCTCACAACCTCACTTTTCTTCCTTCACATCTTTCTCCACTATCTTCTTCACCTTCTTCAATTTCTACTACTAAATCTCTTCGAAACACTTCTTTATTCAAAATCAAATGCATTAAAACCGAAAAAGAAGCTTCTTCATCAGAGCCAAATCGTGGTTTCGATCCTAAATCAGGTGTATCTGTTTACAAACCTAAGTCTTATGAAGTTCTCGCTTCTGATGCTGCTAATTCACTCAATTTTGCTCTTCAAGATGGAAAACTGAGACTCGAAATCGATTTCCCGCCCTTGCCCAGCAACATTTCTTCATATAAGGGATCTTCAGATGATTTCATCGATGCCAACATTCAACTTGTCTTGGCTGTTGTAAAAAAGCTACAGGAGAAAAAAGAGACCAGAGCTTGCATAGTATTCCCTGATAAACCAGAAAAGCTTCGAGCCTCTCAGTTGTTCAAAGCAGCTCTGGATTCAGTTGATGGCCTTACTATAGGCTCCTTAGATGATATCCCTGCAGGACCTGTGGCTTCATTTTTCAGATCTGTTAGAAACACCCTTGATTTTGACTTTGAAGATGAGAATGAAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCTGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAATTGTTGAGGGTCCTTGGACTTCAAGAAGAAGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGA

Protein sequence

>Msa0538050

MLLSMAMAMSSLPHNLTFLPSHLSPLSSSPSSISTTKSLRNTSLFKIKCIKTEKEASSSEPNRGFDPKSGVSVYKPKSYEVLASDAANSLNFALQDGKLRLEIDFPPLPSNISSYKGSSDDFIDANIQLVLAVVKKLQEKKETRACIVFPDKPEKLRASQLFKAALDSVDGLTIGSLDDIPAGPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLYIFINSSTRELGYIEKYVEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRSSTWWEEDSDLEVSSAWRT*