AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521820 MtrunA17_Chr3g0140071 97.465 434 7 1 1 434 1 430 0.0 877
Msa0521820 MtrunA17_Chr1g0146151 61.806 432 154 2 1 432 1 421 0.0 542
Msa0521820 MtrunA17_Chr6g0486611 63.747 411 133 5 1 408 1 398 0.0 535
Msa0521820 MtrunA17_Chr8g0390211 60.641 437 156 5 1 434 1 424 0.0 523
Msa0521820 MtrunA17_Chr4g0071031 65.896 346 111 2 1 345 1 340 5.39e-172 489
Msa0521820 MtrunA17_Chr2g0329981 66.959 342 110 2 1 339 1 342 1.16e-171 489
Msa0521820 MtrunA17_Chr1g0183631 68.239 318 101 0 1 318 1 318 2.48e-168 480
Msa0521820 MtrunA17_Chr2g0299661 60.533 375 131 5 1 364 1 369 1.10e-165 474
Msa0521820 MtrunA17_Chr7g0261501 67.500 320 104 0 1 320 1 320 1.33e-165 473
Msa0521820 MtrunA17_Chr1g0166821 69.707 307 93 0 1 307 2 308 1.53e-165 473
Msa0521820 MtrunA17_Chr8g0342821 65.970 335 105 3 1 335 1 326 5.53e-165 472
Msa0521820 MtrunA17_Chr1g0187571 66.770 322 99 1 1 322 2 315 6.68e-162 464
Msa0521820 MtrunA17_Chr1g0167261 66.667 300 98 1 1 298 2 301 4.45e-148 424
Msa0521820 MtrunA17_Chr3g0140431 36.918 279 163 6 5 273 32 307 3.05e-54 190
Msa0521820 MtrunA17_Chr7g0214531 35.439 285 165 6 5 273 31 312 9.77e-54 189
Msa0521820 MtrunA17_Chr1g0146301 36.201 279 165 6 5 273 118 393 4.47e-53 188
Msa0521820 MtrunA17_Chr1g0213321 35.357 280 167 6 5 273 113 389 2.23e-52 186
Msa0521820 MtrunA17_Chr7g0253211 36.525 282 161 6 9 276 324 601 2.77e-50 182
Msa0521820 MtrunA17_Chr8g0340491 34.752 282 162 7 9 273 128 404 4.41e-46 169
Msa0521820 MtrunA17_Chr7g0245031 26.293 232 144 5 9 229 148 363 6.28e-15 76.6
Msa0521820 MtrunA17_Chr7g0276111 28.440 218 136 6 6 213 141 348 1.25e-14 75.9
Msa0521820 MtrunA17_Chr7g0272841 27.854 219 133 6 8 213 67 273 2.71e-14 75.1
Msa0521820 MtrunA17_Chr5g0405421 27.854 219 130 6 8 213 98 301 3.55e-14 74.3
Msa0521820 MtrunA17_Chr7g0242561 28.302 212 136 6 8 213 55 256 3.81e-14 74.3
Msa0521820 MtrunA17_Chr1g0201571 28.774 212 126 9 9 209 126 323 1.27e-13 72.8
Msa0521820 MtrunA17_Chr8g0374701 27.477 222 136 7 6 213 122 332 1.44e-13 72.8
Msa0521820 MtrunA17_Chr1g0203881 27.848 237 152 8 8 238 40 263 1.71e-13 72.4
Msa0521820 MtrunA17_Chr4g0045261 27.650 217 139 5 6 213 134 341 3.51e-13 71.6
Msa0521820 MtrunA17_Chr3g0127571 27.523 218 138 6 6 213 135 342 4.85e-13 70.9
Msa0521820 MtrunA17_Chr1g0173541 26.887 212 139 6 8 213 51 252 5.43e-13 70.9
Msa0521820 MtrunA17_Chr7g0257751 29.139 151 100 4 8 152 57 206 5.88e-13 70.5
Msa0521820 MtrunA17_Chr5g0402551 27.650 217 139 6 6 213 131 338 2.65e-12 68.6
Msa0521820 MtrunA17_Chr4g0059951 28.571 154 103 4 5 152 69 221 8.99e-12 67.0
Msa0521820 MtrunA17_Chr3g0093391 25.664 226 129 7 9 209 23 234 1.11e-11 66.6
Msa0521820 MtrunA17_Chr8g0385971 30.841 214 109 9 14 209 95 287 1.21e-11 66.6
Msa0521820 MtrunA17_Chr4g0018201 24.603 252 147 8 9 228 759 999 1.37e-11 67.0
Msa0521820 MtrunA17_Chr8g0339221 28.846 156 100 3 1 154 1 147 1.43e-11 65.9
Msa0521820 MtrunA17_Chr5g0428981 24.603 252 147 8 9 228 763 1003 1.66e-11 66.6
Msa0521820 MtrunA17_Chr0c02g0489761 26.977 215 141 5 5 213 74 278 1.88e-11 65.9
Msa0521820 MtrunA17_Chr3g0098951 24.793 242 151 7 9 238 84 306 1.89e-11 65.9
Msa0521820 MtrunA17_Chr7g0256001 27.570 214 137 5 9 213 141 345 2.52e-11 65.5
Msa0521820 MtrunA17_Chr5g0407121 31.250 144 87 5 5 136 34 177 2.58e-11 65.5
Msa0521820 MtrunA17_Chr5g0444171 24.885 217 135 6 9 213 92 292 3.40e-11 65.1
Msa0521820 MtrunA17_Chr5g0448721 26.360 239 151 7 9 238 96 318 3.81e-11 65.1
Msa0521820 MtrunA17_Chr3g0123491 25.523 239 134 8 8 214 92 318 3.87e-11 64.7
Msa0521820 MtrunA17_Chr3g0107051 26.484 219 135 8 7 214 19 222 4.21e-11 64.7
Msa0521820 MtrunA17_Chr3g0139371 25.316 237 134 8 8 214 73 296 7.21e-11 63.5
Msa0521820 MtrunA17_Chr3g0131861 29.245 212 115 7 14 209 102 294 7.40e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521820 AT4G28880.3 60.514 428 148 5 1 424 1 411 0.0 521
Msa0521820 AT4G28880.2 60.514 428 148 5 1 424 1 411 0.0 521
Msa0521820 AT4G28880.1 60.514 428 148 5 1 424 1 411 0.0 521
Msa0521820 AT4G28880.4 60.514 428 148 5 1 424 1 411 0.0 521
Msa0521820 AT4G28860.1 60.911 417 148 3 1 417 1 402 0.0 520
Msa0521820 AT4G28860.2 73.270 318 85 0 1 318 1 318 0.0 514
Msa0521820 AT4G26100.1 56.627 415 146 7 1 407 1 389 2.95e-167 478
Msa0521820 AT1G72710.1 66.159 328 109 2 1 327 1 327 5.80e-165 472
Msa0521820 AT5G57015.1 66.154 325 108 1 1 323 1 325 6.59e-165 471
Msa0521820 AT5G44100.1 71.044 297 86 0 1 297 1 297 5.15e-163 468
Msa0521820 AT5G44100.2 71.044 297 86 0 1 297 1 297 5.15e-163 468
Msa0521820 AT1G03930.1 69.024 297 92 0 1 297 1 297 6.28e-162 465
Msa0521820 AT3G23340.1 66.562 320 106 1 1 320 1 319 9.64e-162 463
Msa0521820 AT2G19470.1 64.438 329 110 1 1 329 1 322 1.14e-161 462
Msa0521820 AT4G28540.1 69.799 298 90 0 1 298 5 302 1.18e-161 464
Msa0521820 AT4G14340.2 63.582 335 114 1 1 335 7 333 3.02e-159 454
Msa0521820 AT4G14340.1 65.625 320 109 1 1 320 7 325 3.51e-159 457
Msa0521820 AT5G43320.2 61.756 353 131 2 1 353 1 349 1.71e-157 449
Msa0521820 AT5G43320.3 61.756 353 131 2 1 353 1 349 1.71e-157 449
Msa0521820 AT5G43320.1 69.360 297 91 0 1 297 1 297 2.01e-157 454
Msa0521820 AT1G04440.1 69.024 297 92 0 1 297 1 297 5.39e-156 449
Msa0521820 AT3G23340.2 62.813 320 104 2 1 320 1 305 3.36e-148 428
Msa0521820 AT4G08800.1 60.204 294 85 2 1 294 1 262 3.34e-129 375
Msa0521820 AT2G25760.2 36.786 280 162 4 9 273 107 386 2.49e-55 194
Msa0521820 AT2G25760.1 37.143 280 158 5 9 273 107 383 1.01e-54 193
Msa0521820 AT3G13670.1 34.948 289 169 6 5 277 131 416 3.85e-53 189
Msa0521820 AT3G03940.1 36.525 282 163 6 9 277 140 418 4.05e-52 186
Msa0521820 AT5G18190.2 35.563 284 167 6 9 279 130 410 9.00e-51 182
Msa0521820 AT5G18190.1 35.563 284 167 6 9 279 130 410 9.00e-51 182
Msa0521820 AT3G50530.1 28.111 217 138 5 6 213 145 352 3.66e-15 78.2
Msa0521820 AT1G54960.1 28.440 218 133 6 8 213 67 273 7.13e-15 77.4
Msa0521820 AT1G54960.2 28.440 218 133 6 8 213 67 273 7.13e-15 77.4
Msa0521820 AT3G49370.1 29.358 218 136 6 7 215 140 348 2.84e-14 75.5
Msa0521820 AT4G36070.2 27.230 213 139 5 8 213 70 273 4.10e-14 74.7
Msa0521820 AT2G17890.1 26.761 213 140 5 8 213 107 310 4.60e-14 74.7
Msa0521820 AT4G36070.1 27.230 213 139 5 8 213 70 273 4.64e-14 74.7
Msa0521820 AT1G09000.2 28.571 217 132 6 9 213 69 274 8.67e-14 73.9
Msa0521820 AT5G24430.1 29.224 219 135 6 7 215 141 349 8.77e-14 73.9
Msa0521820 AT1G09000.1 28.571 217 132 6 9 213 69 274 1.08e-13 73.6
Msa0521820 AT1G67580.1 30.811 185 115 6 8 182 405 586 2.39e-13 72.8
Msa0521820 AT1G67580.2 30.811 185 115 6 8 182 405 586 2.39e-13 72.8
Msa0521820 AT3G57530.2 26.047 215 143 6 5 213 59 263 3.86e-13 71.2
Msa0521820 AT3G50530.2 27.083 240 142 8 6 213 145 383 6.63e-13 71.2
Msa0521820 AT5G12480.1 25.806 217 135 7 8 213 58 259 6.94e-13 70.9
Msa0521820 AT1G74740.1 28.931 159 106 4 5 157 55 212 7.40e-13 70.9
Msa0521820 AT3G08730.1 24.569 232 158 5 4 229 128 348 8.04e-13 70.5
Msa0521820 AT3G08730.2 24.569 232 158 5 4 229 128 348 8.04e-13 70.5
Msa0521820 AT1G12580.1 25.210 238 157 6 8 238 43 266 1.09e-12 70.1
Msa0521820 AT2G41860.1 25.943 212 141 6 8 213 53 254 1.14e-12 70.1
Msa0521820 AT2G46700.1 25.664 226 132 5 6 213 140 347 1.20e-12 70.1
Msa0521820 AT3G57530.1 29.221 154 102 4 5 152 59 211 1.32e-12 70.1
Msa0521820 AT5G19450.2 26.852 216 132 7 9 213 57 257 1.37e-12 70.1
Msa0521820 AT5G19450.1 26.852 216 132 7 9 213 57 257 1.37e-12 70.1
Msa0521820 AT2G41860.2 25.943 212 141 6 8 213 53 254 1.73e-12 69.7
Msa0521820 AT2G32510.1 26.154 260 166 7 1 255 1 239 2.15e-12 68.6
Msa0521820 AT2G35890.2 26.360 239 151 7 9 238 132 354 2.20e-12 69.3
Msa0521820 AT2G35890.1 26.360 239 151 7 9 238 132 354 2.20e-12 69.3
Msa0521820 AT5G66210.3 27.064 218 131 6 9 213 62 264 2.68e-12 68.9
Msa0521820 AT4G32660.3 28.085 235 130 6 8 214 62 285 3.33e-12 68.2
Msa0521820 AT4G32660.2 28.085 235 130 6 8 214 70 293 3.51e-12 67.8
Msa0521820 AT5G66210.5 27.064 218 131 6 9 213 62 264 3.83e-12 68.6
Msa0521820 AT5G66210.1 27.064 218 131 6 9 213 62 264 3.98e-12 68.6
Msa0521820 AT5G66210.2 27.064 218 131 6 9 213 62 264 3.98e-12 68.6
Msa0521820 AT3G23000.1 26.941 219 139 8 4 213 20 226 3.99e-12 68.2
Msa0521820 AT5G66210.6 27.064 218 131 6 9 213 62 264 4.52e-12 68.2
Msa0521820 AT5G66210.4 27.064 218 131 6 9 213 62 264 4.52e-12 68.2
Msa0521820 AT4G32660.1 28.085 235 130 6 8 214 70 293 4.58e-12 67.8
Msa0521820 AT4G21940.3 26.147 218 131 7 9 213 102 302 5.21e-12 68.2
Msa0521820 AT1G18890.1 26.818 220 135 7 5 213 59 263 5.77e-12 68.2
Msa0521820 AT4G23650.1 27.700 213 138 6 9 215 78 280 6.90e-12 67.8
Msa0521820 AT4G21940.2 26.147 218 131 7 9 213 102 302 7.83e-12 67.8
Msa0521820 AT4G21940.1 26.147 218 131 7 9 213 102 302 9.18e-12 67.4
Msa0521820 AT3G17850.1 24.419 258 151 7 9 233 882 1128 1.54e-11 67.0
Msa0521820 AT3G20410.2 26.496 234 141 8 9 230 91 305 1.70e-11 66.6
Msa0521820 AT3G20410.1 26.496 234 141 8 9 230 91 305 1.70e-11 66.6
Msa0521820 AT4G10010.2 29.469 207 121 8 14 209 161 353 2.40e-11 66.2
Msa0521820 AT1G33770.1 26.354 277 160 11 14 277 146 391 2.97e-11 65.9
Msa0521820 AT5G64960.1 25.506 247 142 8 9 230 26 255 3.98e-11 65.5
Msa0521820 AT1G45160.2 27.059 255 144 9 9 233 670 912 4.54e-11 65.5
Msa0521820 AT1G45160.1 27.059 255 144 9 9 233 670 912 4.55e-11 65.5
Msa0521820 AT1G76040.3 27.801 241 143 8 9 237 112 333 5.04e-11 65.1
Msa0521820 AT1G49580.1 26.977 215 139 5 8 213 149 354 5.05e-11 65.1
Msa0521820 AT5G63370.5 27.488 211 132 7 8 207 296 496 5.33e-11 65.1
Msa0521820 AT5G63370.10 27.488 211 132 7 8 207 296 496 5.33e-11 65.1
Msa0521820 AT2G31500.1 27.189 217 132 7 8 213 65 266 5.61e-11 65.1
Msa0521820 AT5G63370.7 27.488 211 132 7 8 207 296 496 5.90e-11 65.1
Msa0521820 AT5G63370.8 27.488 211 132 7 8 207 296 496 5.90e-11 65.1
Msa0521820 AT5G63370.4 27.488 211 132 7 8 207 296 496 5.90e-11 65.1
Msa0521820 AT5G63370.6 27.488 211 132 7 8 207 296 496 5.90e-11 65.1
Msa0521820 AT5G63370.1 27.488 211 132 7 8 207 296 496 5.90e-11 65.1
Msa0521820 AT5G63370.2 27.488 211 132 7 8 207 162 362 6.57e-11 64.7
Msa0521820 AT5G63370.3 27.488 211 132 7 8 207 162 362 6.57e-11 64.7
Msa0521820 AT3G56760.1 27.826 230 142 6 9 223 124 344 6.71e-11 64.7
Msa0521820 AT5G63370.9 27.488 211 132 7 8 207 162 362 6.77e-11 64.3
Msa0521820 AT3G19100.1 25.581 215 142 5 8 213 143 348 7.13e-11 64.7
Msa0521820 AT1G76040.2 27.801 241 143 8 9 237 112 333 8.35e-11 64.3
Msa0521820 AT4G04720.2 24.885 217 135 6 9 213 80 280 9.90e-11 63.9
Msa0521820 AT4G04720.1 24.885 217 135 6 9 213 80 280 9.90e-11 63.9

Find 141 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCCTGTGGGCCTTTC+AGG 0.072007 3_4:-74782874 None:intergenic
TCAAATCTAGGTCGTGTATT+TGG 0.085941 3_4:+74782895 Msa0521820:CDS
AGGAATATGCTTGCTTGTTT+TGG 0.195324 3_4:-74779511 None:intergenic
TATAAAAGGTAAGGTTAAAA+TGG 0.205294 3_4:-74777864 None:intergenic
TATTCTGGTTATGGATCTTC+TGG 0.212846 3_4:+74778914 Msa0521820:CDS
TGTTTCTCATATAGGTATTT+TGG 0.215378 3_4:+74783121 Msa0521820:intron
TTTGATCAAGATCCAGATTA+TGG 0.217415 3_4:+74781047 Msa0521820:CDS
TTGGAGAAGACTGTATAATT+TGG 0.243957 3_4:-74778741 None:intergenic
GAATCCAGCTGCTTGAAATA+TGG 0.275973 3_4:-74782927 None:intergenic
CAAGCAAGCATATTCCTTAT+AGG 0.278492 3_4:+74779517 Msa0521820:CDS
AAGAAGAGAATGAATATAAA+AGG 0.289046 3_4:-74777878 None:intergenic
ATAACTTCCTAATGGGTATT+AGG 0.293154 3_4:+74779309 Msa0521820:CDS
GCAGCTGGATTCCTTCTTTA+CGG 0.295950 3_4:+74782938 Msa0521820:CDS
AGAGAGAATAAAAGTTTAAC+AGG 0.303019 3_4:+74780311 Msa0521820:intron
CAAATCTAGGTCGTGTATTT+GGG 0.318363 3_4:+74782896 Msa0521820:CDS
TCATTTGGTGAAATTTATAT+AGG 0.322821 3_4:+74778087 Msa0521820:CDS
GCAAAGTCGCCGTGATGATT+TGG 0.329153 3_4:+74780457 Msa0521820:CDS
ATACCCATTAGGAAGTTATC+TGG 0.331317 3_4:-74779305 None:intergenic
TAGGTTTATATTATTGATTT+CGG 0.339874 3_4:+74779465 Msa0521820:intron
TGATGGAGATCATAATATTC+TGG 0.354764 3_4:+74778899 Msa0521820:CDS
AAAATCGGAAGCGGTTCATT+TGG 0.355035 3_4:+74778072 Msa0521820:CDS
GGATCTTCTGGGACGTAGTC+TGG 0.355238 3_4:+74778926 Msa0521820:CDS
AGCATTTAGATTCTTTAGAT+TGG 0.357090 3_4:-74782567 None:intergenic
CAAACCAGATAACTTCCTAA+TGG 0.358154 3_4:+74779301 Msa0521820:CDS
CGCTTTAAGAATCCATAATC+TGG 0.362175 3_4:-74781059 None:intergenic
GTCCTTATGTACTTCTTAAG+AGG 0.366081 3_4:+74780494 Msa0521820:CDS
AACAACAAAATATACCTATA+AGG 0.367234 3_4:-74779531 None:intergenic
CGTGATGATTTGGAGTCTAT+TGG 0.367974 3_4:+74780467 Msa0521820:CDS
AGATCATAATATTCTGGTTA+TGG 0.373211 3_4:+74778905 Msa0521820:CDS
GGACAAGCCATTACATTTGA+TGG 0.374678 3_4:-74783276 None:intergenic
TGAGGTCGTTGCCGTCAAAA+TGG 0.379560 3_4:+74778221 Msa0521820:CDS
TTTAAGATTGGTCGCAAAAT+CGG 0.381240 3_4:+74778057 Msa0521820:CDS
GTTGTGTGTTATGTTGTGTT+AGG 0.381657 3_4:+74777760 Msa0521820:intron
TATATTATTGATTTCGGACT+AGG 0.399991 3_4:+74779471 Msa0521820:CDS
CACATTTGGACAATCAAGAT+TGG 0.423042 3_4:-74782525 None:intergenic
ATAAAAGGTAAGGTTAAAAT+GGG 0.430244 3_4:-74777863 None:intergenic
AAACCAGATAACTTCCTAAT+GGG 0.430261 3_4:+74779302 Msa0521820:CDS
GGTAGAGACAAAGATAGAAA+TGG 0.431337 3_4:-74777925 None:intergenic
TTTATAACTTACTTTCTCCT+TGG 0.432685 3_4:-74778760 None:intergenic
AATCCAGCTGCTTGAAATAT+GGG 0.440658 3_4:-74782926 None:intergenic
TTAGGCTGCACACGCACATT+TGG 0.441172 3_4:-74782539 None:intergenic
AATTTCTTCTACCAAATAGT+AGG 0.449095 3_4:+74782963 Msa0521820:exon
ACTCCCATATTTCAAGCAGC+TGG 0.449190 3_4:+74782923 Msa0521820:CDS
TGCTCCCGCAGAAGACAAAA+AGG 0.451965 3_4:-74778953 None:intergenic
TTTAGATTCTTTAGATTGGA+TGG 0.456240 3_4:-74782563 None:intergenic
TGAAGGAAGTTAATCGTGTC+AGG 0.462730 3_4:-74783241 None:intergenic
ATTATAATCTACAGTTCCTC+TGG 0.462864 3_4:-74783205 None:intergenic
TAACGTACATTTACTCGGTT+CGG 0.467735 3_4:+74777719 Msa0521820:five_prime_UTR
GTTGGCGGAAAGTTTAAGAT+TGG 0.473575 3_4:+74778045 Msa0521820:CDS
ATTCTGGTTATGGATCTTCT+GGG 0.476383 3_4:+74778915 Msa0521820:CDS
ACTATGACAATTTATTCGAC+TGG 0.479555 3_4:+74781759 Msa0521820:CDS
GAGAATGAATATAAAAGGTA+AGG 0.482539 3_4:-74777873 None:intergenic
CCCACAGGAACTTCAAATCT+AGG 0.486336 3_4:+74782883 Msa0521820:CDS
TGCAATACTCACTTAGGAAT+CGG 0.487644 3_4:+74780353 Msa0521820:CDS
TTCTTTAGATTGGATGGCTT+AGG 0.488699 3_4:-74782557 None:intergenic
TTCCTCTTAAGAAGTACATA+AGG 0.490195 3_4:-74780496 None:intergenic
AGGTTAAAATGGGAAATAGA+AGG 0.493888 3_4:-74777853 None:intergenic
GAAGAAATTCGCCGTAAAGA+AGG 0.496549 3_4:-74782949 None:intergenic
CAGTCTACAACCAGTGGTTG+TGG 0.500770 3_4:+74782022 Msa0521820:CDS
CACCTTCCCATCAAATGTAA+TGG 0.506530 3_4:+74783269 Msa0521820:three_prime_UTR
GTACCGCACCATCTCATAGT+TGG 0.509024 3_4:-74778876 None:intergenic
TCTAAATGCTAAGAATCATA+CGG 0.510015 3_4:+74782580 Msa0521820:CDS
CCGATCATCCGCTAACAACA+TGG 0.515593 3_4:+74778014 Msa0521820:exon
CGTGAGTTGTTCACTCGTGA+AGG 0.516158 3_4:+74781089 Msa0521820:CDS
CCATGTTGTTAGCGGATGAT+CGG 0.516513 3_4:-74778014 None:intergenic
ATGCTTGAAAGAAAATCAAA+AGG 0.519967 3_4:-74783472 None:intergenic
AATAGAGTACATGCATTCCA+AGG 0.528223 3_4:+74779259 Msa0521820:CDS
GCATCCACAACTATTGTATG+AGG 0.532224 3_4:+74778718 Msa0521820:CDS
GCAAGTTGCAATACTCACTT+AGG 0.533425 3_4:+74780347 Msa0521820:CDS
AACATGGAGTGGGTCGTTGG+CGG 0.534619 3_4:+74778030 Msa0521820:exon
GAGTCAAACATGCATGAATG+AGG 0.535206 3_4:+74783406 Msa0521820:three_prime_UTR
AGCCATTACATTTGATGGGA+AGG 0.537173 3_4:-74783271 None:intergenic
GTGGTTGTGGAAAAGCATAC+AGG 0.537634 3_4:+74782035 Msa0521820:CDS
GACCCACTCCATGTTGTTAG+CGG 0.537742 3_4:-74778022 None:intergenic
TATTAGGAGAAAATCAAGTC+AGG 0.540941 3_4:+74779325 Msa0521820:CDS
ATGTAATGGCTTGTCCCACT+TGG 0.544410 3_4:+74783283 Msa0521820:three_prime_UTR
TTGGCCTCATACAATAGTTG+TGG 0.548570 3_4:-74778722 None:intergenic
CAATGATCCGTCCACTTCAT+CGG 0.549710 3_4:+74782816 Msa0521820:CDS
GACAAGCCATTACATTTGAT+GGG 0.552401 3_4:-74783275 None:intergenic
TTATGTACTTCTTAAGAGGA+AGG 0.553282 3_4:+74780498 Msa0521820:CDS
GGTGGATGTGAGACAAAGTC+TGG 0.555403 3_4:+74783353 Msa0521820:three_prime_UTR
CTTTCAGACCCTGCCAAGGA+AGG 0.558293 3_4:-74780647 None:intergenic
ATGAGATGGTGCGGTACTGA+TGG 0.560221 3_4:+74778882 Msa0521820:CDS
AACAACATGGAGTGGGTCGT+TGG 0.562685 3_4:+74778027 Msa0521820:exon
ACCTAGATTTGAAGTTCCTG+TGG 0.563473 3_4:-74782884 None:intergenic
TTTGATGTTAGCAGACCAGA+TGG 0.566646 3_4:+74778995 Msa0521820:CDS
TGTTCAAAGCAAAAGTCGGT+TGG 0.570397 3_4:-74777824 None:intergenic
GACAGTAACGTACATTTACT+CGG 0.571575 3_4:+74777714 None:intergenic
TGTAGGAGAAGAAGAGAACA+AGG 0.572961 3_4:+74778696 Msa0521820:intron
GATGGGAAGGTGTCATCTGA+AGG 0.574063 3_4:-74783258 None:intergenic
CTAAATGCTAAGAATCATAC+GGG 0.574445 3_4:+74782581 Msa0521820:CDS
GAATAAAAGTTTAACAGGGA+CGG 0.577039 3_4:+74780316 Msa0521820:CDS
GCACTAGGCACGGCATCTGA+AGG 0.578403 3_4:-74781978 None:intergenic
GAAGTTTCTCTCTCTCCAAG+TGG 0.579252 3_4:-74783298 None:intergenic
TGGAGAGAGAGAAACTTCAA+AGG 0.582747 3_4:+74783303 Msa0521820:three_prime_UTR
TTTGGGCAAAGCCGATGAAG+TGG 0.584387 3_4:-74782827 None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG 0.585651 3_4:+74782868 Msa0521820:CDS
GATGTGAGACAAAGTCTGGC+TGG 0.588042 3_4:+74783357 Msa0521820:three_prime_UTR
CAGCGGCGGCGATGAACGAA+CGG 0.590843 3_4:-74777965 None:intergenic
AAGTTTCTCTCTCTCCAAGT+GGG 0.592899 3_4:-74783297 None:intergenic
AGTCAAACATGCATGAATGA+GGG 0.595161 3_4:+74783407 Msa0521820:three_prime_UTR
AGACTTTGTCTCACATCCAC+CGG 0.599465 3_4:-74783351 None:intergenic
AAAGTAAGACGCAAACTCCA+CGG 0.599632 3_4:-74781003 None:intergenic
CATCCGCTAACAACATGGAG+TGG 0.601509 3_4:+74778019 Msa0521820:exon
AAGTAAGACGCAAACTCCAC+GGG 0.604948 3_4:-74781002 None:intergenic
ACCACTGGTTGTAGACTGCT+AGG 0.607910 3_4:-74782017 None:intergenic
CCTAGATTTGAAGTTCCTGT+GGG 0.610904 3_4:-74782883 None:intergenic
ATCAGCAGACGCAACAGACA+AGG 0.613053 3_4:+74781795 Msa0521820:CDS
AGTTCCTCTGGTGAAGTGAG+CGG 0.613098 3_4:-74783193 None:intergenic
CTTAGCTAGATAGCAAGTAC+AGG 0.613630 3_4:+74777795 Msa0521820:five_prime_UTR
ATCCGCTAACAACATGGAGT+GGG 0.614583 3_4:+74778020 Msa0521820:exon
TGGATCTTGATCAAATGTCA+AGG 0.615184 3_4:-74781039 None:intergenic
GTGGTATTCCAACTATGAGA+TGG 0.615515 3_4:+74778868 Msa0521820:CDS
AGACTGCTAGGCACAGCACT+AGG 0.616647 3_4:-74782005 None:intergenic
TCGTTGTTCAAAGCAAAAGT+CGG 0.622233 3_4:-74777828 None:intergenic
AAGGAGACAAAAGCAATCAT+CGG 0.624317 3_4:+74781814 Msa0521820:CDS
ATTGGTCGCAAAATCGGAAG+CGG 0.626522 3_4:+74778063 Msa0521820:CDS
CTCAGAGGTGTCCATATCAG+AGG 0.626948 3_4:-74778202 None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG 0.627991 3_4:-74782823 None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG 0.629959 3_4:+74782860 Msa0521820:CDS
ACTAGGAACAGCACTAGGCA+CGG 0.636662 3_4:-74781988 None:intergenic
AAATTATACAGTCTTCTCCA+AGG 0.638640 3_4:+74778743 Msa0521820:CDS
ACGACGGTTGTTAACAGCGG+CGG 0.639831 3_4:-74777979 None:intergenic
GCCTAGCAGTCTACAACCAG+TGG 0.640292 3_4:+74782016 Msa0521820:CDS
ACAGCTTTCAGACCCTGCCA+AGG 0.644712 3_4:-74780651 None:intergenic
ATTGAAAATGTATACCTCAG+TGG 0.646544 3_4:-74780724 None:intergenic
ACAGCACTAGGAACAGCACT+AGG 0.646662 3_4:-74781993 None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG 0.649427 3_4:+74778929 Msa0521820:CDS
TCTGAAAGCTGTCACCAAAG+AGG 0.650261 3_4:+74780662 Msa0521820:CDS
GTCAAACATGCATGAATGAG+GGG 0.653208 3_4:+74783408 Msa0521820:three_prime_UTR
ATAGAGTACATGCATTCCAA+GGG 0.660373 3_4:+74779260 Msa0521820:CDS
GCTTTGCGAATCATATCCCG+TGG 0.663642 3_4:+74780986 Msa0521820:CDS
CTCTGATATGGACACCTCTG+AGG 0.669495 3_4:+74778203 Msa0521820:CDS
CAATAGACTCCAAATCATCA+CGG 0.670210 3_4:-74780466 None:intergenic
ATTCCAACTATGAGATGGTG+CGG 0.673968 3_4:+74778873 Msa0521820:CDS
GAGAGAATAAAAGTTTAACA+GGG 0.702224 3_4:+74780312 Msa0521820:intron
CATGCCGCTCACTTCACCAG+AGG 0.711353 3_4:+74783189 Msa0521820:three_prime_UTR
TTTGACGGCAACGACCTCAG+AGG 0.711927 3_4:-74778217 None:intergenic
GTTACGACGGTTGTTAACAG+CGG 0.717534 3_4:-74777982 None:intergenic
GAAGTTATCAACTTCCACTG+AGG 0.761442 3_4:+74780710 Msa0521820:CDS
TCGGCGATGATACGTTACGA+CGG 0.783157 3_4:-74777995 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTCTAATCTTTTATTA+TGG + chr3_4:74779565-74779584 Msa0521820:intron 10.0%
!!! ACATTTTGAATTTTAAAAAA+TGG + chr3_4:74780552-74780571 Msa0521820:intron 10.0%
!! GAAAAATAATAATAATAACA+AGG - chr3_4:74782327-74782346 None:intergenic 10.0%
!!! TATTATTATTATTTTTCACT+TGG + chr3_4:74782330-74782349 Msa0521820:intron 10.0%
!!! TAGGTTTATATTATTGATTT+CGG + chr3_4:74779465-74779484 Msa0521820:intron 15.0%
!! TAAACAAATCAAGTATATTT+AGG - chr3_4:74779626-74779645 None:intergenic 15.0%
!! TGATATTAATTATTCTTCAT+TGG + chr3_4:74779755-74779774 Msa0521820:intron 15.0%
!! AAAAAAATGTCTAAATTTGA+TGG + chr3_4:74779921-74779940 Msa0521820:intron 15.0%
!!! ATTCTTTTTAGGTAAATTTA+GGG + chr3_4:74780597-74780616 Msa0521820:intron 15.0%
!! AAATAAACTTCTTATTACAT+CGG - chr3_4:74781714-74781733 None:intergenic 15.0%
!!! TTGTTTTGATTTTTTTTACT+TGG + chr3_4:74782748-74782767 Msa0521820:intron 15.0%
!! TAATACAAAAAGAAGAATTA+TGG - chr3_4:74783437-74783456 None:intergenic 15.0%
!! ATAAAAGGTAAGGTTAAAAT+GGG - chr3_4:74777866-74777885 None:intergenic 20.0%
!! TATAAAAGGTAAGGTTAAAA+TGG - chr3_4:74777867-74777886 None:intergenic 20.0%
!! AAGAAGAGAATGAATATAAA+AGG - chr3_4:74777881-74777900 None:intergenic 20.0%
!!! TCATTTGGTGAAATTTATAT+AGG + chr3_4:74778087-74778106 Msa0521820:CDS 20.0%
!!! TGAAAGTGTGTAAAAAATAA+AGG - chr3_4:74778606-74778625 None:intergenic 20.0%
!!! TAAGTTATAAAAGAAGCATT+TGG + chr3_4:74778772-74778791 Msa0521820:intron 20.0%
!!! AAGTTATAAAAGAAGCATTT+GGG + chr3_4:74778773-74778792 Msa0521820:intron 20.0%
!!! TTCCTTGATGATATTAAATA+TGG + chr3_4:74779073-74779092 Msa0521820:intron 20.0%
!!! ATGATATTAAATATGGCTTT+TGG + chr3_4:74779080-74779099 Msa0521820:intron 20.0%
!! TGAAACATAAAAGGAATTAT+GGG - chr3_4:74779407-74779426 None:intergenic 20.0%
!! ATGAAACATAAAAGGAATTA+TGG - chr3_4:74779408-74779427 None:intergenic 20.0%
!! TAAGACATATGAAACATAAA+AGG - chr3_4:74779416-74779435 None:intergenic 20.0%
!! AACAACAAAATATACCTATA+AGG - chr3_4:74779534-74779553 None:intergenic 20.0%
!!! TCATGTTTTTACATGTTATA+AGG + chr3_4:74779589-74779608 Msa0521820:intron 20.0%
!!! ACATTAAAGTATTAACGTAA+GGG - chr3_4:74779997-74780016 None:intergenic 20.0%
!!! AACATTAAAGTATTAACGTA+AGG - chr3_4:74779998-74780017 None:intergenic 20.0%
!!! TAGGTATTTTTTGCTTATAA+TGG + chr3_4:74780048-74780067 Msa0521820:intron 20.0%
!! CAAAATAGAATGAAATTTGT+GGG - chr3_4:74780421-74780440 None:intergenic 20.0%
!! GTAAGAAAATTACAATGAAT+GGG - chr3_4:74780534-74780553 None:intergenic 20.0%
!! TGTAAGAAAATTACAATGAA+TGG - chr3_4:74780535-74780554 None:intergenic 20.0%
!!! CATTCTTTTTAGGTAAATTT+AGG + chr3_4:74780596-74780615 Msa0521820:intron 20.0%
!! AGGAAATTAAAAACTAGATT+GGG - chr3_4:74780775-74780794 None:intergenic 20.0%
!! AAGGAAATTAAAAACTAGAT+TGG - chr3_4:74780776-74780795 None:intergenic 20.0%
!!! AACAATATTAAGAGCTTTTA+AGG + chr3_4:74780848-74780867 Msa0521820:intron 20.0%
!! TTTAAGTAATTACTGTCAAT+TGG + chr3_4:74781142-74781161 Msa0521820:intron 20.0%
!!! ATGATAATTTGCTTATTAGT+TGG + chr3_4:74781196-74781215 Msa0521820:intron 20.0%
!!! AATTTTTGGATATAGAGTAA+TGG - chr3_4:74781541-74781560 None:intergenic 20.0%
!!! ATATCCAAAAATTCATGTTT+TGG + chr3_4:74781548-74781567 Msa0521820:intron 20.0%
!!! ATTTCCAAAACATGAATTTT+TGG - chr3_4:74781555-74781574 None:intergenic 20.0%
!! AATAAACTTCTTATTACATC+GGG - chr3_4:74781713-74781732 None:intergenic 20.0%
!! GATGTAATAAGAAGTTTATT+TGG + chr3_4:74781713-74781732 Msa0521820:intron 20.0%
!!! TGAACCTTTAAACATTTTTA+TGG + chr3_4:74781851-74781870 Msa0521820:intron 20.0%
!! TAGACCATAAAAATGTTTAA+AGG - chr3_4:74781858-74781877 None:intergenic 20.0%
!! AATCAGGAAAGTTTAATAAT+CGG - chr3_4:74781920-74781939 None:intergenic 20.0%
!! AATAATAACAAGGAATTTGT+TGG - chr3_4:74782317-74782336 None:intergenic 20.0%
!! AAAATTAAGAAGAAATCCAA+TGG - chr3_4:74782641-74782660 None:intergenic 20.0%
!! TACCATAGTTGTAAAATATT+TGG + chr3_4:74783079-74783098 Msa0521820:intron 20.0%
!!! AAAGGATTTAACAATTTTGA+AGG + chr3_4:74783321-74783340 Msa0521820:three_prime_UTR 20.0%
! GAGAATGAATATAAAAGGTA+AGG - chr3_4:74777876-74777895 None:intergenic 25.0%
! TTCTATTCAACATTCATATG+CGG + chr3_4:74778151-74778170 Msa0521820:intron 25.0%
!! AAAGAAACAAACCATTTTGA+CGG - chr3_4:74778235-74778254 None:intergenic 25.0%
! TACAAAATGTTGATCTCATT+AGG - chr3_4:74778366-74778385 None:intergenic 25.0%
!! ATGAGATCAACATTTTGTAT+CGG + chr3_4:74778367-74778386 Msa0521820:intron 25.0%
!!! GCTACATTTCTTTATTTTGT+AGG + chr3_4:74778679-74778698 Msa0521820:intron 25.0%
! TTTATAACTTACTTTCTCCT+TGG - chr3_4:74778763-74778782 None:intergenic 25.0%
!! AGATCATAATATTCTGGTTA+TGG + chr3_4:74778905-74778924 Msa0521820:CDS 25.0%
!!! TGCTTGCTTTATTTTTCAAT+TGG + chr3_4:74779041-74779060 Msa0521820:intron 25.0%
! AGCCATATTTAATATCATCA+AGG - chr3_4:74779078-74779097 None:intergenic 25.0%
! AAAACTGCTACTATATTGAT+AGG - chr3_4:74779127-74779146 None:intergenic 25.0%
! TCTAAATTCATTATCTTCAC+TGG + chr3_4:74779356-74779375 Msa0521820:intron 25.0%
!!! CTGCAATTTGTTACATTTAT+AGG + chr3_4:74779446-74779465 Msa0521820:intron 25.0%
!!! TATATTATTGATTTCGGACT+AGG + chr3_4:74779471-74779490 Msa0521820:CDS 25.0%
!! TCTATTTACAAAAGTTCTAG+AGG + chr3_4:74779650-74779669 Msa0521820:intron 25.0%
! CATTGGATAACAGTTAATAA+AGG + chr3_4:74779772-74779791 Msa0521820:intron 25.0%
! GTTAATACTTTAATGTTGTG+AGG + chr3_4:74780001-74780020 Msa0521820:intron 25.0%
!! ATCTCAAATAATTCCTTTTC+CGG + chr3_4:74780183-74780202 Msa0521820:intron 25.0%
! AGTTTAACTAGTCAAGTTAA+TGG + chr3_4:74780256-74780275 Msa0521820:intron 25.0%
! TTATCAAGGTCAAAACATTA+GGG - chr3_4:74780283-74780302 None:intergenic 25.0%
! TTTATCAAGGTCAAAACATT+AGG - chr3_4:74780284-74780303 None:intergenic 25.0%
! AGAGAGAATAAAAGTTTAAC+AGG + chr3_4:74780311-74780330 Msa0521820:intron 25.0%
! GAGAGAATAAAAGTTTAACA+GGG + chr3_4:74780312-74780331 Msa0521820:intron 25.0%
! CCAAAATAGAATGAAATTTG+TGG - chr3_4:74780422-74780441 None:intergenic 25.0%
!! CCACAAATTTCATTCTATTT+TGG + chr3_4:74780419-74780438 Msa0521820:intron 25.0%
!! ATCAATTGCACATTCTTTTT+AGG + chr3_4:74780586-74780605 Msa0521820:intron 25.0%
! GAAATTAAAAACTAGATTGG+GGG - chr3_4:74780773-74780792 None:intergenic 25.0%
! GGAAATTAAAAACTAGATTG+GGG - chr3_4:74780774-74780793 None:intergenic 25.0%
! AAGAAAGGTTAAATACTTAG+TGG - chr3_4:74781264-74781283 None:intergenic 25.0%
! CACAAAATTTGCATAACTAA+AGG - chr3_4:74781293-74781312 None:intergenic 25.0%
! ATAAACTTCTTATTACATCG+GGG - chr3_4:74781712-74781731 None:intergenic 25.0%
! ATCAGGAAAGTTTAATAATC+GGG - chr3_4:74781919-74781938 None:intergenic 25.0%
! CACTTCAATATACATTATCT+AGG - chr3_4:74782135-74782154 None:intergenic 25.0%
! TAAATTCTAACTCATTCTAC+TGG - chr3_4:74782181-74782200 None:intergenic 25.0%
!! TTTTAATGCTCATTGCAAAA+CGG + chr3_4:74782209-74782228 Msa0521820:intron 25.0%
!!! ATTATTTTTCACTTGGAAGT+TGG + chr3_4:74782337-74782356 Msa0521820:intron 25.0%
!!! TGAATTATTGATTCCTGAAA+AGG - chr3_4:74782477-74782496 None:intergenic 25.0%
! TTTAGATTCTTTAGATTGGA+TGG - chr3_4:74782566-74782585 None:intergenic 25.0%
! AGCATTTAGATTCTTTAGAT+TGG - chr3_4:74782570-74782589 None:intergenic 25.0%
! TCTAAATGCTAAGAATCATA+CGG + chr3_4:74782580-74782599 Msa0521820:CDS 25.0%
! AATTTCTTCTACCAAATAGT+AGG + chr3_4:74782963-74782982 Msa0521820:exon 25.0%
!! CAATTTTCTTACCTACTATT+TGG - chr3_4:74782977-74782996 None:intergenic 25.0%
! GACTCTGTTATATTATTATC+AGG + chr3_4:74783018-74783037 Msa0521820:intron 25.0%
!! AGCCAAATATTTTACAACTA+TGG - chr3_4:74783084-74783103 None:intergenic 25.0%
!! TGTTTCTCATATAGGTATTT+TGG + chr3_4:74783121-74783140 Msa0521820:intron 25.0%
! ATGCTTGAAAGAAAATCAAA+AGG - chr3_4:74783475-74783494 None:intergenic 25.0%
AGGTTAAAATGGGAAATAGA+AGG - chr3_4:74777856-74777875 None:intergenic 30.0%
! TTTAAGATTGGTCGCAAAAT+CGG + chr3_4:74778057-74778076 Msa0521820:CDS 30.0%
GTGATGAATGATAAAGAGAT+GGG - chr3_4:74778269-74778288 None:intergenic 30.0%
! TGTATAATTTGTGAATGCTC+CGG + chr3_4:74778315-74778334 Msa0521820:intron 30.0%
TGATCTATTCCTTAGATTAC+CGG - chr3_4:74778337-74778356 None:intergenic 30.0%
! TGAGATCAACATTTTGTATC+GGG + chr3_4:74778368-74778387 Msa0521820:intron 30.0%
! ATGAATGTAGCTTGATAACA+TGG + chr3_4:74778493-74778512 Msa0521820:intron 30.0%
! TAGCTTGATAACATGGAATT+AGG + chr3_4:74778500-74778519 Msa0521820:intron 30.0%
! AGCTTGATAACATGGAATTA+GGG + chr3_4:74778501-74778520 Msa0521820:intron 30.0%
TAAACTTATACTTGCTTGCT+AGG + chr3_4:74778568-74778587 Msa0521820:intron 30.0%
TTGGAGAAGACTGTATAATT+TGG - chr3_4:74778744-74778763 None:intergenic 30.0%
AAATTATACAGTCTTCTCCA+AGG + chr3_4:74778743-74778762 Msa0521820:CDS 30.0%
!! AAGAAGCATTTGGGTATATT+TGG + chr3_4:74778782-74778801 Msa0521820:intron 30.0%
ATTTGGATCTCATATGGAAA+AGG + chr3_4:74778799-74778818 Msa0521820:intron 30.0%
TGATGGAGATCATAATATTC+TGG + chr3_4:74778899-74778918 Msa0521820:CDS 30.0%
AAACCAGATAACTTCCTAAT+GGG + chr3_4:74779302-74779321 Msa0521820:CDS 30.0%
! ATAACTTCCTAATGGGTATT+AGG + chr3_4:74779309-74779328 Msa0521820:CDS 30.0%
! ATTTTCTCCTAATACCCATT+AGG - chr3_4:74779319-74779338 None:intergenic 30.0%
TATTAGGAGAAAATCAAGTC+AGG + chr3_4:74779325-74779344 Msa0521820:CDS 30.0%
ACATAAAAGGAATTATGGGA+CGG - chr3_4:74779403-74779422 None:intergenic 30.0%
! TAAAACAATCTGGTTTCATG+TGG - chr3_4:74779681-74779700 None:intergenic 30.0%
TGTGTGACATTAAAACAATC+TGG - chr3_4:74779691-74779710 None:intergenic 30.0%
TTACCAAAAACTTCTGTAAC+TGG + chr3_4:74779831-74779850 Msa0521820:intron 30.0%
! GATCATTGCCTATTTTCTTA+TGG + chr3_4:74779857-74779876 Msa0521820:intron 30.0%
! TTGCTTATAATGGAGTTTAG+AGG + chr3_4:74780058-74780077 Msa0521820:intron 30.0%
! TGCTTATAATGGAGTTTAGA+GGG + chr3_4:74780059-74780078 Msa0521820:intron 30.0%
AGATTACACAGATTACAAGT+TGG - chr3_4:74780167-74780186 None:intergenic 30.0%
CTCTCTGTATAAGTTTATCA+AGG - chr3_4:74780297-74780316 None:intergenic 30.0%
GAATAAAAGTTTAACAGGGA+CGG + chr3_4:74780316-74780335 Msa0521820:CDS 30.0%
! TTCCTCTTAAGAAGTACATA+AGG - chr3_4:74780499-74780518 None:intergenic 30.0%
TTATGTACTTCTTAAGAGGA+AGG + chr3_4:74780498-74780517 Msa0521820:CDS 30.0%
! AAATTTAGGGCTTGACTATA+TGG + chr3_4:74780610-74780629 Msa0521820:intron 30.0%
! CTTGTCATATTTTTCCTCTT+TGG - chr3_4:74780679-74780698 None:intergenic 30.0%
ATTGAAAATGTATACCTCAG+TGG - chr3_4:74780727-74780746 None:intergenic 30.0%
!! CTTTTAAGGATTGCTATTAC+TGG + chr3_4:74780862-74780881 Msa0521820:intron 30.0%
TTTGATCAAGATCCAGATTA+TGG + chr3_4:74781047-74781066 Msa0521820:CDS 30.0%
TTACTGTCAATTGGACATAT+AGG + chr3_4:74781151-74781170 Msa0521820:intron 30.0%
AACTAAAGGAGAAAGAAGAA+AGG - chr3_4:74781279-74781298 None:intergenic 30.0%
ATTCTTCATTTGTGTTTGCT+TGG + chr3_4:74781594-74781613 Msa0521820:intron 30.0%
ATGTACTAGTAACCAATCTT+AGG + chr3_4:74781639-74781658 Msa0521820:intron 30.0%
TGTACTAGTAACCAATCTTA+GGG + chr3_4:74781640-74781659 Msa0521820:intron 30.0%
GAAGATAAATACAACACAAG+AGG - chr3_4:74781687-74781706 None:intergenic 30.0%
TAAACTTCTTATTACATCGG+GGG - chr3_4:74781711-74781730 None:intergenic 30.0%
ACTATGACAATTTATTCGAC+TGG + chr3_4:74781759-74781778 Msa0521820:CDS 30.0%
!! AATAGTCATTGATTCAAGTG+AGG - chr3_4:74781953-74781972 None:intergenic 30.0%
CTTCTTATGTTCATACAATG+AGG + chr3_4:74782068-74782087 Msa0521820:intron 30.0%
AACGAATTCTGTTCAATTGT+GGG + chr3_4:74782101-74782120 Msa0521820:intron 30.0%
TGGTAAATATCTGTCAATCT+TGG - chr3_4:74782297-74782316 None:intergenic 30.0%
AATTAAGCATGTACATCATC+AGG - chr3_4:74782453-74782472 None:intergenic 30.0%
! ACATGCTTAATTTCCTTTTC+AGG + chr3_4:74782461-74782480 Msa0521820:intron 30.0%
!!! AGTTTTGTTACAGTAACTTG+AGG - chr3_4:74782500-74782519 None:intergenic 30.0%
CTAAATGCTAAGAATCATAC+GGG + chr3_4:74782581-74782600 Msa0521820:CDS 30.0%
GCAATTAATAGAGGATATAG+AGG - chr3_4:74782665-74782684 None:intergenic 30.0%
CATGTCTTAGCAATTAATAG+AGG - chr3_4:74782674-74782693 None:intergenic 30.0%
CTCTATTAATTGCTAAGACA+TGG + chr3_4:74782672-74782691 Msa0521820:intron 30.0%
TATTAATTGCTAAGACATGG+TGG + chr3_4:74782675-74782694 Msa0521820:intron 30.0%
!! ACATTTTCTGCAGTTGATTT+GGG - chr3_4:74782847-74782866 None:intergenic 30.0%
ACAGTCAAAATACAATGACA+GGG - chr3_4:74783048-74783067 None:intergenic 30.0%
!! TTCTCATATAGGTATTTTGG+AGG + chr3_4:74783124-74783143 Msa0521820:intron 30.0%
ATTATAATCTACAGTTCCTC+TGG - chr3_4:74783208-74783227 None:intergenic 30.0%
!! GGATTTAACAATTTTGAAGG+AGG + chr3_4:74783324-74783343 Msa0521820:three_prime_UTR 30.0%
TAACGTACATTTACTCGGTT+CGG + chr3_4:74777719-74777738 Msa0521820:five_prime_UTR 35.0%
GTTGTGTGTTATGTTGTGTT+AGG + chr3_4:74777760-74777779 Msa0521820:intron 35.0%
TCGTTGTTCAAAGCAAAAGT+CGG - chr3_4:74777831-74777850 None:intergenic 35.0%
GGTAGAGACAAAGATAGAAA+TGG - chr3_4:74777928-74777947 None:intergenic 35.0%
AACGAACGGAATGAAAAAGA+GGG - chr3_4:74777954-74777973 None:intergenic 35.0%
CGTGATGAATGATAAAGAGA+TGG - chr3_4:74778270-74778289 None:intergenic 35.0%
! ACATTTTGTATCGGGTTTGA+TGG + chr3_4:74778376-74778395 Msa0521820:intron 35.0%
! CATTTTGTATCGGGTTTGAT+GGG + chr3_4:74778377-74778396 Msa0521820:intron 35.0%
CTCAACTGATTAGGGTTAAA+AGG + chr3_4:74778409-74778428 Msa0521820:intron 35.0%
TTAGGGTTAAAAGGAGTTTG+AGG + chr3_4:74778418-74778437 Msa0521820:intron 35.0%
TGATGATCAGGGTTTAAACT+CGG - chr3_4:74778446-74778465 None:intergenic 35.0%
AGTTTAAACCCTGATCATCA+AGG + chr3_4:74778446-74778465 Msa0521820:intron 35.0%
! TGGAATTAGGGATGTGTTTT+TGG + chr3_4:74778513-74778532 Msa0521820:intron 35.0%
CTCAACAACTATTGTGTACA+AGG + chr3_4:74778636-74778655 Msa0521820:intron 35.0%
GGGTATATTTGGATCTCATA+TGG + chr3_4:74778793-74778812 Msa0521820:intron 35.0%
! TTCTGATTCGTCTTACACTT+CGG + chr3_4:74778838-74778857 Msa0521820:intron 35.0%
! TATTCTGGTTATGGATCTTC+TGG + chr3_4:74778914-74778933 Msa0521820:CDS 35.0%
! ATTCTGGTTATGGATCTTCT+GGG + chr3_4:74778915-74778934 Msa0521820:CDS 35.0%
ATCGAAAAGTTACCTCTTGT+AGG + chr3_4:74779149-74779168 Msa0521820:intron 35.0%
AATAGAGTACATGCATTCCA+AGG + chr3_4:74779259-74779278 Msa0521820:CDS 35.0%
ATAGAGTACATGCATTCCAA+GGG + chr3_4:74779260-74779279 Msa0521820:CDS 35.0%
GTCTCTATGTAAAAATCCCT+TGG - chr3_4:74779279-74779298 None:intergenic 35.0%
CAAACCAGATAACTTCCTAA+TGG + chr3_4:74779301-74779320 Msa0521820:CDS 35.0%
ATACCCATTAGGAAGTTATC+TGG - chr3_4:74779308-74779327 None:intergenic 35.0%
CATAAAAGGAATTATGGGAC+GGG - chr3_4:74779402-74779421 None:intergenic 35.0%
!!! GAATATGCTTGCTTGTTTTG+GGG - chr3_4:74779512-74779531 None:intergenic 35.0%
!! GGAATATGCTTGCTTGTTTT+GGG - chr3_4:74779513-74779532 None:intergenic 35.0%
! AGGAATATGCTTGCTTGTTT+TGG - chr3_4:74779514-74779533 None:intergenic 35.0%
CAAGCAAGCATATTCCTTAT+AGG + chr3_4:74779517-74779536 Msa0521820:CDS 35.0%
! ACACCAGTTACAGAAGTTTT+TGG - chr3_4:74779837-74779856 None:intergenic 35.0%
CAAGGATGCCATAAGAAAAT+AGG - chr3_4:74779868-74779887 None:intergenic 35.0%
TTATAACTGCACAGTAGTAC+TGG - chr3_4:74779898-74779917 None:intergenic 35.0%
ACCATAATAAGTGTGGAAGT+AGG + chr3_4:74780029-74780048 Msa0521820:intron 35.0%
ACCTACTTCCACACTTATTA+TGG - chr3_4:74780033-74780052 None:intergenic 35.0%
! GCTTATAATGGAGTTTAGAG+GGG + chr3_4:74780060-74780079 Msa0521820:intron 35.0%
! CTTATAATGGAGTTTAGAGG+GGG + chr3_4:74780061-74780080 Msa0521820:intron 35.0%
TGCAATACTCACTTAGGAAT+CGG + chr3_4:74780353-74780372 Msa0521820:CDS 35.0%
TACAAGCTTAGCTGTAAAGA+AGG - chr3_4:74780397-74780416 None:intergenic 35.0%
CAATAGACTCCAAATCATCA+CGG - chr3_4:74780469-74780488 None:intergenic 35.0%
GTCCTTATGTACTTCTTAAG+AGG + chr3_4:74780494-74780513 Msa0521820:CDS 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG + chr3_4:74780634-74780653 Msa0521820:intron 35.0%
! GTCAGGGGTTAATCATTTTA+TGG - chr3_4:74780751-74780770 None:intergenic 35.0%
TCATGTAGGTCAAAGTATGA+GGG - chr3_4:74780808-74780827 None:intergenic 35.0%
TTCATGTAGGTCAAAGTATG+AGG - chr3_4:74780809-74780828 None:intergenic 35.0%
ATAGTTCCAGGTATTCATGT+AGG - chr3_4:74780822-74780841 None:intergenic 35.0%
ATTGTTTCGTCAATAGTTCC+AGG - chr3_4:74780834-74780853 None:intergenic 35.0%
CTTCAATGATAAAACCTCTC+AGG - chr3_4:74780916-74780935 None:intergenic 35.0%
! CTTCTGAGAACAAGGAATAT+GGG - chr3_4:74780967-74780986 None:intergenic 35.0%
TGGATCTTGATCAAATGTCA+AGG - chr3_4:74781042-74781061 None:intergenic 35.0%
!! CGCTTTAAGAATCCATAATC+TGG - chr3_4:74781062-74781081 None:intergenic 35.0%
!!! TGTTTTAGCCTGTTGAATGT+AGG + chr3_4:74781220-74781239 Msa0521820:intron 35.0%
GTGCTTAAGTAGAGATATTC+TGG - chr3_4:74781316-74781335 None:intergenic 35.0%
ACATACTGCATACAGTACAT+AGG + chr3_4:74781334-74781353 Msa0521820:intron 35.0%
!! CAACTTTGAAACCCTAAGAT+TGG - chr3_4:74781654-74781673 None:intergenic 35.0%
! TAGGGTTTCAAAGTTGTTTC+TGG + chr3_4:74781658-74781677 Msa0521820:intron 35.0%
TTTGGCTGAATTTAATGAGC+AGG + chr3_4:74781731-74781750 Msa0521820:intron 35.0%
AAGGAGACAAAAGCAATCAT+CGG + chr3_4:74781814-74781833 Msa0521820:CDS 35.0%
TGCATTTACTGGAATGCATA+TGG + chr3_4:74781881-74781900 Msa0521820:intron 35.0%
GTGAGGAAGAGAATAAAATC+AGG - chr3_4:74781936-74781955 None:intergenic 35.0%
GAACGAATTCTGTTCAATTG+TGG + chr3_4:74782100-74782119 Msa0521820:intron 35.0%
CTCATTGCAAAACGGAAAAA+AGG + chr3_4:74782217-74782236 Msa0521820:intron 35.0%
AGTCTTTCTTAGTTGAACAG+CGG - chr3_4:74782388-74782407 None:intergenic 35.0%
CACATTTGGACAATCAAGAT+TGG - chr3_4:74782528-74782547 None:intergenic 35.0%
TTCTTTAGATTGGATGGCTT+AGG - chr3_4:74782560-74782579 None:intergenic 35.0%
! GACATTTTCTGCAGTTGATT+TGG - chr3_4:74782848-74782867 None:intergenic 35.0%
AAAATGTCTCTAAGCCTGAA+AGG + chr3_4:74782860-74782879 Msa0521820:CDS 35.0%
TCAAATCTAGGTCGTGTATT+TGG + chr3_4:74782895-74782914 Msa0521820:CDS 35.0%
CAAATCTAGGTCGTGTATTT+GGG + chr3_4:74782896-74782915 Msa0521820:CDS 35.0%
AATCCAGCTGCTTGAAATAT+GGG - chr3_4:74782929-74782948 None:intergenic 35.0%
GTTTATCCAGAGTGTGAAAT+TGG + chr3_4:74782996-74783015 Msa0521820:intron 35.0%
GACAGTCAAAATACAATGAC+AGG - chr3_4:74783049-74783068 None:intergenic 35.0%
ATATGAGAAACAAACAGAGG+CGG - chr3_4:74783113-74783132 None:intergenic 35.0%
CCTATATGAGAAACAAACAG+AGG - chr3_4:74783116-74783135 None:intergenic 35.0%
! CCTCTGTTTGTTTCTCATAT+AGG + chr3_4:74783113-74783132 Msa0521820:intron 35.0%
GACAAGCCATTACATTTGAT+GGG - chr3_4:74783278-74783297 None:intergenic 35.0%
AGTCAAACATGCATGAATGA+GGG + chr3_4:74783407-74783426 Msa0521820:three_prime_UTR 35.0%
CTTAGCTAGATAGCAAGTAC+AGG + chr3_4:74777795-74777814 Msa0521820:five_prime_UTR 40.0%
TGTTCAAAGCAAAAGTCGGT+TGG - chr3_4:74777827-74777846 None:intergenic 40.0%
ACGGAATGAAAAAGAGGGTT+TGG - chr3_4:74777949-74777968 None:intergenic 40.0%
GAACGAACGGAATGAAAAAG+AGG - chr3_4:74777955-74777974 None:intergenic 40.0%
! GTTGGCGGAAAGTTTAAGAT+TGG + chr3_4:74778045-74778064 Msa0521820:CDS 40.0%
AAAATCGGAAGCGGTTCATT+TGG + chr3_4:74778072-74778091 Msa0521820:CDS 40.0%
TTTGGGTAGCTCAACTGATT+AGG + chr3_4:74778400-74778419 Msa0521820:intron 40.0%
TTGGGTAGCTCAACTGATTA+GGG + chr3_4:74778401-74778420 Msa0521820:intron 40.0%
! AGTAGCTACCTTGATGATCA+GGG - chr3_4:74778457-74778476 None:intergenic 40.0%
! TAGTAGCTACCTTGATGATC+AGG - chr3_4:74778458-74778477 None:intergenic 40.0%
AGCTAGTACGAATCAGCATT+AGG - chr3_4:74778662-74778681 None:intergenic 40.0%
TGTAGGAGAAGAAGAGAACA+AGG + chr3_4:74778696-74778715 Msa0521820:intron 40.0%
GCATCCACAACTATTGTATG+AGG + chr3_4:74778718-74778737 Msa0521820:CDS 40.0%
TTGGCCTCATACAATAGTTG+TGG - chr3_4:74778725-74778744 None:intergenic 40.0%
! CGTCTTACACTTCGGATTTT+AGG + chr3_4:74778846-74778865 Msa0521820:intron 40.0%
! CTTACACTTCGGATTTTAGG+TGG + chr3_4:74778849-74778868 Msa0521820:intron 40.0%
GTGGTATTCCAACTATGAGA+TGG + chr3_4:74778868-74778887 Msa0521820:CDS 40.0%
ATTCCAACTATGAGATGGTG+CGG + chr3_4:74778873-74778892 Msa0521820:CDS 40.0%
TTTGATGTTAGCAGACCAGA+TGG + chr3_4:74778995-74779014 Msa0521820:CDS 40.0%
ATGAATCAGTGGTTACCATC+TGG - chr3_4:74779013-74779032 None:intergenic 40.0%
!! GGTAACCACTGATTCATATC+TGG + chr3_4:74779016-74779035 Msa0521820:intron 40.0%
GCAATCCAGATATGAATCAG+TGG - chr3_4:74779024-74779043 None:intergenic 40.0%
!! ATAGGAGCATTTCCTACAAG+AGG - chr3_4:74779164-74779183 None:intergenic 40.0%
TACTCTATTCTCGAAAGCTG+TGG - chr3_4:74779248-74779267 None:intergenic 40.0%
! TCGGACTAGGAAAAAGATAC+CGG + chr3_4:74779484-74779503 Msa0521820:CDS 40.0%
!! AGTAGTACTGGTACACATCA+AGG - chr3_4:74779886-74779905 None:intergenic 40.0%
GGAGATGACCATAATAAGTG+TGG + chr3_4:74780022-74780041 Msa0521820:intron 40.0%
!!! AGAGGGGGTATTTTGTGAAA+TGG + chr3_4:74780076-74780095 Msa0521820:intron 40.0%
AATCAGAACTCAGAAGAGTC+CGG - chr3_4:74780205-74780224 None:intergenic 40.0%
GCAAGTTGCAATACTCACTT+AGG + chr3_4:74780347-74780366 Msa0521820:CDS 40.0%
! CGTGATGATTTGGAGTCTAT+TGG + chr3_4:74780467-74780486 Msa0521820:CDS 40.0%
GAAGTTATCAACTTCCACTG+AGG + chr3_4:74780710-74780729 Msa0521820:CDS 40.0%
AAAAACTAGATTGGGGGTCA+GGG - chr3_4:74780767-74780786 None:intergenic 40.0%
TAAAAACTAGATTGGGGGTC+AGG - chr3_4:74780768-74780787 None:intergenic 40.0%
CTTTGACCTACATGAATACC+TGG + chr3_4:74780813-74780832 Msa0521820:intron 40.0%
CAATGATAAAACCTCTCAGG+AGG - chr3_4:74780913-74780932 None:intergenic 40.0%
! GCTTCTGAGAACAAGGAATA+TGG - chr3_4:74780968-74780987 None:intergenic 40.0%
AAAGTAAGACGCAAACTCCA+CGG - chr3_4:74781006-74781025 None:intergenic 40.0%
TTTAGCCTGTTGAATGTAGG+AGG + chr3_4:74781223-74781242 Msa0521820:intron 40.0%
TAATGCCTCCTACATTCAAC+AGG - chr3_4:74781231-74781250 None:intergenic 40.0%
! TTTGAGATGAGACCTACATG+TGG + chr3_4:74781363-74781382 Msa0521820:intron 40.0%
TTGTTCTCAAGACCACATGT+AGG - chr3_4:74781378-74781397 None:intergenic 40.0%
!! CGTCTGCTGATATTTTAGGA+TGG - chr3_4:74781786-74781805 None:intergenic 40.0%
! GTTGCGTCTGCTGATATTTT+AGG - chr3_4:74781790-74781809 None:intergenic 40.0%
! ATGGTCTAGCTTGCATTTAC+TGG + chr3_4:74781870-74781889 Msa0521820:intron 40.0%
TTCACTTGGAAGTTGGAACT+TGG + chr3_4:74782344-74782363 Msa0521820:intron 40.0%
TAATTTCTTCCGACTGCCAT+TGG + chr3_4:74782622-74782641 Msa0521820:intron 40.0%
AGAAGAAATCCAATGGCAGT+CGG - chr3_4:74782634-74782653 None:intergenic 40.0%
! CCTAGATTTGAAGTTCCTGT+GGG - chr3_4:74782886-74782905 None:intergenic 40.0%
! ACCTAGATTTGAAGTTCCTG+TGG - chr3_4:74782887-74782906 None:intergenic 40.0%
GAATCCAGCTGCTTGAAATA+TGG - chr3_4:74782930-74782949 None:intergenic 40.0%
GAAGAAATTCGCCGTAAAGA+AGG - chr3_4:74782952-74782971 None:intergenic 40.0%
TGAAGGAAGTTAATCGTGTC+AGG - chr3_4:74783244-74783263 None:intergenic 40.0%
CACCTTCCCATCAAATGTAA+TGG + chr3_4:74783269-74783288 Msa0521820:three_prime_UTR 40.0%
AGCCATTACATTTGATGGGA+AGG - chr3_4:74783274-74783293 None:intergenic 40.0%
GGACAAGCCATTACATTTGA+TGG - chr3_4:74783279-74783298 None:intergenic 40.0%
AAGTTTCTCTCTCTCCAAGT+GGG - chr3_4:74783300-74783319 None:intergenic 40.0%
TGGAGAGAGAGAAACTTCAA+AGG + chr3_4:74783303-74783322 Msa0521820:three_prime_UTR 40.0%
!! CAATTTTGAAGGAGGTATGC+CGG + chr3_4:74783332-74783351 Msa0521820:three_prime_UTR 40.0%
GAGTCAAACATGCATGAATG+AGG + chr3_4:74783406-74783425 Msa0521820:three_prime_UTR 40.0%
GTCAAACATGCATGAATGAG+GGG + chr3_4:74783408-74783427 Msa0521820:three_prime_UTR 40.0%
! GTCTTTTCACGTGTACAGTT+AGG + chr3_4:74783516-74783535 Msa0521820:three_prime_UTR 40.0%
GTTACGACGGTTGTTAACAG+CGG - chr3_4:74777985-74778004 None:intergenic 45.0%
! CCATGTTGTTAGCGGATGAT+CGG - chr3_4:74778017-74778036 None:intergenic 45.0%
ATCCGCTAACAACATGGAGT+GGG + chr3_4:74778020-74778039 Msa0521820:exon 45.0%
ATTGGTCGCAAAATCGGAAG+CGG + chr3_4:74778063-74778082 Msa0521820:CDS 45.0%
! GCTTTTTGCAGCCTCTGATA+TGG + chr3_4:74778191-74778210 Msa0521820:intron 45.0%
GTGAATGCTCCGGTAATCTA+AGG + chr3_4:74778325-74778344 Msa0521820:intron 45.0%
!! TGTATCGGGTTTGATGGGTT+TGG + chr3_4:74778382-74778401 Msa0521820:intron 45.0%
!! GTATCGGGTTTGATGGGTTT+GGG + chr3_4:74778383-74778402 Msa0521820:intron 45.0%
! GAGGACCTTTTTGTCTTCTG+CGG + chr3_4:74778948-74778967 Msa0521820:CDS 45.0%
! AGGACCTTTTTGTCTTCTGC+GGG + chr3_4:74778949-74778968 Msa0521820:CDS 45.0%
TAGGAAATGCTCCTATCCAC+AGG + chr3_4:74779168-74779187 Msa0521820:intron 45.0%
AGGAAATGCTCCTATCCACA+GGG + chr3_4:74779169-74779188 Msa0521820:intron 45.0%
CATTGAAAGTCCCTGTGGAT+AGG - chr3_4:74779182-74779201 None:intergenic 45.0%
GCTTTCATTGAAAGTCCCTG+TGG - chr3_4:74779187-74779206 None:intergenic 45.0%
! CGGACTAGGAAAAAGATACC+GGG + chr3_4:74779485-74779504 Msa0521820:CDS 45.0%
! GATGGACTCAAAGTGTCTAC+TGG + chr3_4:74779939-74779958 Msa0521820:intron 45.0%
AACTCAGAAGAGTCCGGAAA+AGG - chr3_4:74780199-74780218 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+GGG + chr3_4:74780639-74780658 Msa0521820:intron 45.0%
TCTGAAAGCTGTCACCAAAG+AGG + chr3_4:74780662-74780681 Msa0521820:CDS 45.0%
AAAACTAGATTGGGGGTCAG+GGG - chr3_4:74780766-74780785 None:intergenic 45.0%
AGTATGAGGGCGAGAAGAAA+AGG - chr3_4:74780795-74780814 None:intergenic 45.0%
ATAAAACCTCTCAGGAGGAG+GGG - chr3_4:74780908-74780927 None:intergenic 45.0%
GATAAAACCTCTCAGGAGGA+GGG - chr3_4:74780909-74780928 None:intergenic 45.0%
TGATAAAACCTCTCAGGAGG+AGG - chr3_4:74780910-74780929 None:intergenic 45.0%
! TCGCAAAGCTTCTGAGAACA+AGG - chr3_4:74780975-74780994 None:intergenic 45.0%
AAGTAAGACGCAAACTCCAC+GGG - chr3_4:74781005-74781024 None:intergenic 45.0%
! GTATGCTTTTCCACAACCAC+TGG - chr3_4:74782035-74782054 None:intergenic 45.0%
! GTGGTTGTGGAAAAGCATAC+AGG + chr3_4:74782035-74782054 Msa0521820:CDS 45.0%
CAATGATCCGTCCACTTCAT+CGG + chr3_4:74782816-74782835 Msa0521820:CDS 45.0%
CCCACAGGAACTTCAAATCT+AGG + chr3_4:74782883-74782902 Msa0521820:CDS 45.0%
ACTCCCATATTTCAAGCAGC+TGG + chr3_4:74782923-74782942 Msa0521820:CDS 45.0%
GCAGCTGGATTCCTTCTTTA+CGG + chr3_4:74782938-74782957 Msa0521820:CDS 45.0%
CAGAGTCCAATTTCACACTC+TGG - chr3_4:74783005-74783024 None:intergenic 45.0%
!! GGTATTTTGGAGGAGTCTGT+TGG + chr3_4:74783134-74783153 Msa0521820:intron 45.0%
! ATGTAATGGCTTGTCCCACT+TGG + chr3_4:74783283-74783302 Msa0521820:three_prime_UTR 45.0%
GAAGTTTCTCTCTCTCCAAG+TGG - chr3_4:74783301-74783320 None:intergenic 45.0%
AGACTTTGTCTCACATCCAC+CGG - chr3_4:74783354-74783373 None:intergenic 45.0%
TCGGCGATGATACGTTACGA+CGG - chr3_4:74777998-74778017 None:intergenic 50.0%
CCGATCATCCGCTAACAACA+TGG + chr3_4:74778014-74778033 Msa0521820:exon 50.0%
CATCCGCTAACAACATGGAG+TGG + chr3_4:74778019-74778038 Msa0521820:exon 50.0%
GACCCACTCCATGTTGTTAG+CGG - chr3_4:74778025-74778044 None:intergenic 50.0%
AACAACATGGAGTGGGTCGT+TGG + chr3_4:74778027-74778046 Msa0521820:exon 50.0%
!! CTCAGAGGTGTCCATATCAG+AGG - chr3_4:74778205-74778224 None:intergenic 50.0%
CTCTGATATGGACACCTCTG+AGG + chr3_4:74778203-74778222 Msa0521820:CDS 50.0%
TGAGGTCGTTGCCGTCAAAA+TGG + chr3_4:74778221-74778240 Msa0521820:CDS 50.0%
GTACCGCACCATCTCATAGT+TGG - chr3_4:74778879-74778898 None:intergenic 50.0%
! ATGAGATGGTGCGGTACTGA+TGG + chr3_4:74778882-74778901 Msa0521820:CDS 50.0%
TGCTCCCGCAGAAGACAAAA+AGG - chr3_4:74778956-74778975 None:intergenic 50.0%
GCAAAGTCGCCGTGATGATT+TGG + chr3_4:74780457-74780476 Msa0521820:CDS 50.0%
!! GCATTTTAGCCTTCCTTGGC+AGG + chr3_4:74780638-74780657 Msa0521820:intron 50.0%
GCTTTGCGAATCATATCCCG+TGG + chr3_4:74780986-74781005 Msa0521820:CDS 50.0%
CGTGAGTTGTTCACTCGTGA+AGG + chr3_4:74781089-74781108 Msa0521820:CDS 50.0%
ATCAGCAGACGCAACAGACA+AGG + chr3_4:74781795-74781814 Msa0521820:CDS 50.0%
ACTAGGAACAGCACTAGGCA+CGG - chr3_4:74781991-74782010 None:intergenic 50.0%
ACAGCACTAGGAACAGCACT+AGG - chr3_4:74781996-74782015 None:intergenic 50.0%
! ACCACTGGTTGTAGACTGCT+AGG - chr3_4:74782020-74782039 None:intergenic 50.0%
CAGTCTACAACCAGTGGTTG+TGG + chr3_4:74782022-74782041 Msa0521820:CDS 50.0%
TTAGGCTGCACACGCACATT+TGG - chr3_4:74782542-74782561 None:intergenic 50.0%
TTTGGGCAAAGCCGATGAAG+TGG - chr3_4:74782830-74782849 None:intergenic 50.0%
TGAGAAACAAACAGAGGCGG+TGG - chr3_4:74783110-74783129 None:intergenic 50.0%
AGTTCCTCTGGTGAAGTGAG+CGG - chr3_4:74783196-74783215 None:intergenic 50.0%
!! GATGGGAAGGTGTCATCTGA+AGG - chr3_4:74783261-74783280 None:intergenic 50.0%
!! TTTTGAAGGAGGTATGCCGG+TGG + chr3_4:74783335-74783354 Msa0521820:three_prime_UTR 50.0%
GGTGGATGTGAGACAAAGTC+TGG + chr3_4:74783353-74783372 Msa0521820:three_prime_UTR 50.0%
GATGTGAGACAAAGTCTGGC+TGG + chr3_4:74783357-74783376 Msa0521820:three_prime_UTR 50.0%
ACGACGGTTGTTAACAGCGG+CGG - chr3_4:74777982-74778001 None:intergenic 55.0%
AACATGGAGTGGGTCGTTGG+CGG + chr3_4:74778030-74778049 Msa0521820:exon 55.0%
TTTGACGGCAACGACCTCAG+AGG - chr3_4:74778220-74778239 None:intergenic 55.0%
!! GGATCTTCTGGGACGTAGTC+TGG + chr3_4:74778926-74778945 Msa0521820:CDS 55.0%
!! TCTTCTGGGACGTAGTCTGG+AGG + chr3_4:74778929-74778948 Msa0521820:CDS 55.0%
!!! GCTTGCTTGTTTTGGGGTCC+CGG - chr3_4:74779506-74779525 None:intergenic 55.0%
CTTTCAGACCCTGCCAAGGA+AGG - chr3_4:74780650-74780669 None:intergenic 55.0%
ACAGCTTTCAGACCCTGCCA+AGG - chr3_4:74780654-74780673 None:intergenic 55.0%
AGACTGCTAGGCACAGCACT+AGG - chr3_4:74782008-74782027 None:intergenic 55.0%
GCCTAGCAGTCTACAACCAG+TGG + chr3_4:74782016-74782035 Msa0521820:CDS 55.0%
GGCAAAGCCGATGAAGTGGA+CGG - chr3_4:74782826-74782845 None:intergenic 55.0%
TCTAAGCCTGAAAGGCCCAC+AGG + chr3_4:74782868-74782887 Msa0521820:CDS 55.0%
GAAGTTCCTGTGGGCCTTTC+AGG - chr3_4:74782877-74782896 None:intergenic 55.0%
AGTTAGCCCCTCCTCCTGAG+AGG + chr3_4:74780899-74780918 Msa0521820:intron 60.0%
GCACTAGGCACGGCATCTGA+AGG - chr3_4:74781981-74782000 None:intergenic 60.0%
CATGCCGCTCACTTCACCAG+AGG + chr3_4:74783189-74783208 Msa0521820:three_prime_UTR 60.0%
CAGCGGCGGCGATGAACGAA+CGG - chr3_4:74777968-74777987 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 74777716 74783572 74777716 ID=Msa0521820;Name=Msa0521820
chr3_4 mRNA 74777716 74783572 74777716 ID=Msa0521820-mRNA-1;Parent=Msa0521820;Name=Msa0521820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=293|1|1|1|0.86|0.75|16|441|434
chr3_4 exon 74777716 74777748 74777716 ID=Msa0521820-mRNA-1:exon:21199;Parent=Msa0521820-mRNA-1
chr3_4 exon 74777773 74778108 74777773 ID=Msa0521820-mRNA-1:exon:21200;Parent=Msa0521820-mRNA-1
chr3_4 exon 74778202 74778242 74778202 ID=Msa0521820-mRNA-1:exon:21201;Parent=Msa0521820-mRNA-1
chr3_4 exon 74778701 74778770 74778701 ID=Msa0521820-mRNA-1:exon:21202;Parent=Msa0521820-mRNA-1
chr3_4 exon 74778868 74779016 74778868 ID=Msa0521820-mRNA-1:exon:21203;Parent=Msa0521820-mRNA-1
chr3_4 exon 74779251 74779346 74779251 ID=Msa0521820-mRNA-1:exon:21204;Parent=Msa0521820-mRNA-1
chr3_4 exon 74779468 74779538 74779468 ID=Msa0521820-mRNA-1:exon:21205;Parent=Msa0521820-mRNA-1
chr3_4 exon 74780313 74780374 74780313 ID=Msa0521820-mRNA-1:exon:21206;Parent=Msa0521820-mRNA-1
chr3_4 exon 74780456 74780519 74780456 ID=Msa0521820-mRNA-1:exon:21207;Parent=Msa0521820-mRNA-1
chr3_4 exon 74780647 74780731 74780647 ID=Msa0521820-mRNA-1:exon:21208;Parent=Msa0521820-mRNA-1
chr3_4 exon 74780984 74781110 74780984 ID=Msa0521820-mRNA-1:exon:21209;Parent=Msa0521820-mRNA-1
chr3_4 exon 74781753 74781835 74781753 ID=Msa0521820-mRNA-1:exon:21210;Parent=Msa0521820-mRNA-1
chr3_4 exon 74781978 74782056 74781978 ID=Msa0521820-mRNA-1:exon:21211;Parent=Msa0521820-mRNA-1
chr3_4 exon 74782483 74782610 74782483 ID=Msa0521820-mRNA-1:exon:21212;Parent=Msa0521820-mRNA-1
chr3_4 exon 74782808 74782984 74782808 ID=Msa0521820-mRNA-1:exon:21213;Parent=Msa0521820-mRNA-1
chr3_4 exon 74783135 74783572 74783135 ID=Msa0521820-mRNA-1:exon:21214;Parent=Msa0521820-mRNA-1
chr3_4 five_prime_UTR 74777716 74777748 74777716 ID=Msa0521820-mRNA-1:five_prime_utr;Parent=Msa0521820-mRNA-1
chr3_4 five_prime_UTR 74777773 74778032 74777773 ID=Msa0521820-mRNA-1:five_prime_utr;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74778033 74778108 74778033 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74778202 74778242 74778202 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74778701 74778770 74778701 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74778868 74779016 74778868 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74779251 74779346 74779251 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74779468 74779538 74779468 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74780313 74780374 74780313 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74780456 74780519 74780456 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74780647 74780731 74780647 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74780984 74781110 74780984 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74781753 74781835 74781753 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74781978 74782056 74781978 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74782483 74782610 74782483 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 CDS 74782808 74782981 74782808 ID=Msa0521820-mRNA-1:cds;Parent=Msa0521820-mRNA-1
chr3_4 three_prime_UTR 74782982 74782984 74782982 ID=Msa0521820-mRNA-1:three_prime_utr;Parent=Msa0521820-mRNA-1
chr3_4 three_prime_UTR 74783135 74783572 74783135 ID=Msa0521820-mRNA-1:three_prime_utr;Parent=Msa0521820-mRNA-1
Gene Sequence

>Msa0521820

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATACCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGCGAGAAGAAGTTATCAACTTCCACTGAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGCCTTCAGATGCCGTGCCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAGCATACAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATTGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAATCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG

Protein sequence

>Msa0521820

MEWVVGGKFKIGRKIGSGSFGEIYIASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDCPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK*