Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167500 | RHN48604.1 | 97.973 | 296 | 6 | 0 | 1 | 296 | 73 | 368 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167500 | sp|Q9LF92|P2A15_ARATH | 69.565 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 1.54e-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167500 | A0A396H9X4 | 97.973 | 296 | 6 | 0 | 1 | 296 | 73 | 368 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa1167500 | -0.805148 | 1.535086e-49 | -8.615850e-47 |
| Msa0053960 | Msa1167500 | -0.814189 | 1.748424e-51 | -8.615850e-47 |
| Msa0117300 | Msa1167500 | -0.807112 | 5.926256e-50 | -8.615850e-47 |
| Msa0649530 | Msa1167500 | -0.801348 | 9.392700e-49 | -8.615850e-47 |
| Msa0651310 | Msa1167500 | -0.803017 | 4.261479e-49 | -8.615850e-47 |
| Msa0705810 | Msa1167500 | -0.808784 | 2.612189e-50 | -8.615850e-47 |
| Msa0712670 | Msa1167500 | -0.803301 | 3.721337e-49 | -8.615850e-47 |
| Msa0748980 | Msa1167500 | -0.860209 | 2.422500e-63 | -8.615850e-47 |
| Msa0752830 | Msa1167500 | -0.814696 | 1.350541e-51 | -8.615850e-47 |
| Msa0756440 | Msa1167500 | -0.814200 | 1.739067e-51 | -8.615850e-47 |
| Msa0795400 | Msa1167500 | -0.826010 | 3.429800e-54 | -8.615850e-47 |
| Msa0813630 | Msa1167500 | -0.806818 | 6.837662e-50 | -8.615850e-47 |
| Msa0825520 | Msa1167500 | -0.868050 | 8.704165e-66 | -8.615850e-47 |
| Msa0835550 | Msa1167500 | -0.817411 | 3.343231e-52 | -8.615850e-47 |
| Msa0131090 | Msa1167500 | -0.813985 | 1.939311e-51 | -8.615850e-47 |
| Msa0134400 | Msa1167500 | -0.815930 | 7.181777e-52 | -8.615850e-47 |
| Msa0135330 | Msa1167500 | 0.810723 | 1.000507e-50 | -8.615850e-47 |
| Msa0160650 | Msa1167500 | -0.806134 | 9.535118e-50 | -8.615850e-47 |
| Msa0163960 | Msa1167500 | -0.816820 | 4.540756e-52 | -8.615850e-47 |
| Msa0225880 | Msa1167500 | -0.800478 | 1.414355e-48 | -8.615850e-47 |
| Msa0372990 | Msa1167500 | -0.821198 | 4.586439e-53 | -8.615850e-47 |
| Msa0378670 | Msa1167500 | -0.812518 | 4.071209e-51 | -8.615850e-47 |
| Msa0378700 | Msa1167500 | -0.818651 | 1.754020e-52 | -8.615850e-47 |
| Msa0383550 | Msa1167500 | 0.837494 | 5.030302e-57 | -8.615850e-47 |
| Msa0393140 | Msa1167500 | -0.802310 | 5.961108e-49 | -8.615850e-47 |
| Msa0415200 | Msa1167500 | -0.844488 | 7.327619e-59 | -8.615850e-47 |
| Msa0419040 | Msa1167500 | -0.803568 | 3.276563e-49 | -8.615850e-47 |
| Msa0428330 | Msa1167500 | -0.816235 | 6.139050e-52 | -8.615850e-47 |
| Msa0431940 | Msa1167500 | -0.821341 | 4.251143e-53 | -8.615850e-47 |
| Msa0460220 | Msa1167500 | -0.807761 | 4.315684e-50 | -8.615850e-47 |
| Msa1036020 | Msa1167500 | 0.809916 | 1.493222e-50 | -8.615850e-47 |
| Msa1042130 | Msa1167500 | 0.976089 | 3.654031e-141 | -8.615850e-47 |
| Msa1067910 | Msa1167500 | -0.808799 | 2.592846e-50 | -8.615850e-47 |
| Msa1071640 | Msa1167500 | -0.814803 | 1.278959e-51 | -8.615850e-47 |
| Msa1076280 | Msa1167500 | 0.805009 | 1.641920e-49 | -8.615850e-47 |
| Msa1079970 | Msa1167500 | 0.820951 | 5.229716e-53 | -8.615850e-47 |
| Msa1083130 | Msa1167500 | 0.816210 | 6.219166e-52 | -8.615850e-47 |
| Msa1101300 | Msa1167500 | -0.800234 | 1.586015e-48 | -8.615850e-47 |
| Msa0304110 | Msa1167500 | -0.803656 | 3.141815e-49 | -8.615850e-47 |
| Msa0314980 | Msa1167500 | -0.806107 | 9.660297e-50 | -8.615850e-47 |
| Msa0341190 | Msa1167500 | -0.808995 | 2.355116e-50 | -8.615850e-47 |
| Msa1124880 | Msa1167500 | 0.973228 | 4.493120e-136 | -8.615850e-47 |
| Msa1161210 | Msa1167500 | -0.814008 | 1.916749e-51 | -8.615850e-47 |
| Msa1167500 | Msa1200270 | 0.801077 | 1.067313e-48 | -8.615850e-47 |
| Msa1167500 | Msa1219060 | -0.811007 | 8.681819e-51 | -8.615850e-47 |
| Msa1167500 | Msa1356730 | -0.833387 | 5.490281e-56 | -8.615850e-47 |
| Msa1167500 | Msa1368660 | -0.818080 | 2.361908e-52 | -8.615850e-47 |
| Msa1167500 | Msa1369180 | -0.801016 | 1.098226e-48 | -8.615850e-47 |
| Msa1167500 | Msa1384620 | -0.868995 | 4.312151e-66 | -8.615850e-47 |
| Msa1167500 | Msa1395580 | -0.809738 | 1.631537e-50 | -8.615850e-47 |
| Msa1167500 | Msa1451780 | -0.813328 | 2.705717e-51 | -8.615850e-47 |
| Msa1167500 | Msa1459630 | -0.812607 | 3.893251e-51 | -8.615850e-47 |
| Msa1167500 | Msa1462600 | -0.800020 | 1.752958e-48 | -8.615850e-47 |
| Msa0521820 | Msa1167500 | 0.804785 | 1.828079e-49 | -8.615850e-47 |
| Msa0864730 | Msa1167500 | -0.868862 | 4.763751e-66 | -8.615850e-47 |
| Msa0864750 | Msa1167500 | -0.870098 | 1.885371e-66 | -8.615850e-47 |
| Msa0887100 | Msa1167500 | -0.804482 | 2.114837e-49 | -8.615850e-47 |
| Msa0927890 | Msa1167500 | -0.802469 | 5.529032e-49 | -8.615850e-47 |
| Msa0938370 | Msa1167500 | -0.802423 | 5.650842e-49 | -8.615850e-47 |
| Msa0968960 | Msa1167500 | -0.840351 | 9.164809e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167500 | MtrunA17_Chr7g0265551 | 97.973 | 296 | 6 | 0 | 1 | 296 | 73 | 368 | 0.0 | 609 |
| Msa1167500 | MtrunA17_Chr5g0397981 | 54.983 | 291 | 116 | 4 | 1 | 290 | 19 | 295 | 2.06e-112 | 327 |
| Msa1167500 | MtrunA17_Chr4g0057281 | 57.509 | 273 | 104 | 2 | 19 | 290 | 19 | 280 | 9.36e-110 | 319 |
| Msa1167500 | MtrunA17_Chr1g0203751 | 53.020 | 298 | 120 | 2 | 1 | 289 | 1 | 287 | 2.25e-109 | 318 |
| Msa1167500 | MtrunA17_Chr8g0350401 | 54.110 | 292 | 115 | 3 | 1 | 284 | 1 | 281 | 3.93e-108 | 315 |
| Msa1167500 | MtrunA17_Chr6g0472801 | 47.603 | 292 | 139 | 2 | 1 | 289 | 1 | 281 | 2.26e-98 | 290 |
| Msa1167500 | MtrunA17_Chr7g0272101 | 31.250 | 272 | 158 | 8 | 22 | 283 | 4 | 256 | 1.45e-33 | 123 |
| Msa1167500 | MtrunA17_Chr4g0010881 | 30.712 | 267 | 154 | 7 | 22 | 287 | 4 | 240 | 2.64e-32 | 119 |
| Msa1167500 | MtrunA17_Chr1g0189721 | 26.354 | 277 | 176 | 6 | 19 | 283 | 4 | 264 | 2.03e-30 | 115 |
| Msa1167500 | MtrunA17_Chr1g0203281 | 26.241 | 282 | 173 | 6 | 21 | 283 | 6 | 271 | 5.88e-29 | 111 |
| Msa1167500 | MtrunA17_Chr1g0189671 | 26.481 | 287 | 176 | 6 | 18 | 285 | 3 | 273 | 1.24e-28 | 110 |
| Msa1167500 | MtrunA17_Chr1g0192371 | 25.862 | 290 | 175 | 8 | 18 | 283 | 7 | 280 | 2.83e-27 | 107 |
| Msa1167500 | MtrunA17_Chr1g0189611 | 25.818 | 275 | 176 | 7 | 21 | 283 | 6 | 264 | 3.95e-27 | 106 |
| Msa1167500 | MtrunA17_Chr1g0189621 | 26.715 | 277 | 170 | 11 | 21 | 283 | 6 | 263 | 1.81e-26 | 104 |
| Msa1167500 | MtrunA17_Chr1g0189821 | 24.727 | 275 | 184 | 6 | 21 | 285 | 6 | 267 | 3.32e-26 | 104 |
| Msa1167500 | MtrunA17_Chr1g0189591 | 37.762 | 143 | 86 | 2 | 21 | 160 | 15 | 157 | 7.57e-26 | 104 |
| Msa1167500 | MtrunA17_Chr1g0189751 | 26.715 | 277 | 175 | 7 | 19 | 283 | 4 | 264 | 1.54e-25 | 103 |
| Msa1167500 | MtrunA17_Chr7g0272091 | 24.742 | 291 | 180 | 7 | 18 | 283 | 6 | 282 | 6.80e-25 | 101 |
| Msa1167500 | MtrunA17_Chr1g0189641 | 24.823 | 282 | 178 | 6 | 21 | 283 | 6 | 272 | 5.28e-24 | 98.6 |
| Msa1167500 | MtrunA17_Chr1g0203331 | 26.971 | 241 | 140 | 5 | 35 | 253 | 5 | 231 | 1.27e-23 | 96.7 |
| Msa1167500 | MtrunA17_Chr3g0097191 | 25.182 | 274 | 179 | 5 | 19 | 283 | 10 | 266 | 3.70e-22 | 93.2 |
| Msa1167500 | MtrunA17_Chr1g0190071 | 24.490 | 294 | 176 | 8 | 21 | 285 | 6 | 282 | 3.69e-21 | 90.9 |
| Msa1167500 | MtrunA17_Chr1g0189771 | 32.414 | 145 | 95 | 2 | 22 | 163 | 15 | 159 | 6.88e-21 | 87.8 |
| Msa1167500 | MtrunA17_Chr1g0189781 | 31.757 | 148 | 92 | 3 | 22 | 163 | 11 | 155 | 1.46e-19 | 86.3 |
| Msa1167500 | MtrunA17_Chr3g0095261 | 24.286 | 280 | 190 | 7 | 19 | 283 | 10 | 282 | 1.64e-17 | 80.9 |
| Msa1167500 | MtrunA17_Chr7g0260801 | 25.177 | 282 | 175 | 8 | 21 | 290 | 18 | 275 | 1.03e-16 | 78.6 |
| Msa1167500 | MtrunA17_Chr1g0189661 | 25.965 | 285 | 180 | 8 | 21 | 285 | 6 | 279 | 3.43e-16 | 77.4 |
| Msa1167500 | MtrunA17_Chr1g0189711 | 24.514 | 257 | 158 | 8 | 18 | 253 | 3 | 244 | 6.46e-14 | 70.5 |
| Msa1167500 | MtrunA17_Chr3g0078331 | 22.222 | 216 | 142 | 5 | 21 | 223 | 19 | 221 | 9.60e-13 | 67.4 |
| Msa1167500 | MtrunA17_Chr1g0189541 | 26.667 | 180 | 101 | 6 | 115 | 283 | 24 | 183 | 7.84e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167500 | AT3G53000.1 | 69.565 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 1.57e-155 | 436 |
| Msa1167500 | AT3G61060.1 | 56.554 | 267 | 106 | 1 | 19 | 285 | 25 | 281 | 4.04e-110 | 321 |
| Msa1167500 | AT3G61060.2 | 56.716 | 268 | 105 | 2 | 19 | 285 | 25 | 282 | 5.99e-109 | 318 |
| Msa1167500 | AT1G12710.1 | 52.805 | 303 | 113 | 5 | 1 | 289 | 1 | 287 | 8.69e-107 | 312 |
| Msa1167500 | AT1G12710.2 | 46.377 | 345 | 113 | 6 | 1 | 289 | 1 | 329 | 2.54e-98 | 292 |
| Msa1167500 | AT1G63090.1 | 51.916 | 287 | 125 | 3 | 4 | 289 | 11 | 285 | 5.10e-98 | 290 |
| Msa1167500 | AT5G52120.1 | 45.791 | 297 | 135 | 3 | 8 | 289 | 1 | 286 | 1.23e-90 | 271 |
| Msa1167500 | AT2G02360.1 | 26.667 | 270 | 176 | 7 | 23 | 286 | 18 | 271 | 1.07e-27 | 108 |
| Msa1167500 | AT2G02340.1 | 27.425 | 299 | 178 | 10 | 9 | 287 | 26 | 305 | 4.75e-27 | 107 |
| Msa1167500 | AT2G02240.1 | 26.599 | 297 | 180 | 9 | 5 | 285 | 44 | 318 | 2.36e-26 | 106 |
| Msa1167500 | AT2G02230.1 | 36.424 | 151 | 88 | 3 | 14 | 162 | 27 | 171 | 7.69e-26 | 105 |
| Msa1167500 | AT1G09155.1 | 26.510 | 298 | 178 | 10 | 22 | 291 | 3 | 287 | 7.49e-25 | 101 |
| Msa1167500 | AT1G80110.1 | 23.810 | 273 | 182 | 5 | 19 | 283 | 1 | 255 | 2.10e-23 | 96.7 |
| Msa1167500 | AT2G02250.1 | 34.395 | 157 | 96 | 4 | 10 | 163 | 36 | 188 | 4.36e-23 | 97.1 |
| Msa1167500 | AT5G24560.1 | 32.143 | 140 | 91 | 1 | 21 | 160 | 5 | 140 | 3.10e-22 | 92.0 |
| Msa1167500 | AT2G02350.2 | 30.464 | 151 | 100 | 3 | 10 | 159 | 15 | 161 | 5.22e-22 | 94.0 |
| Msa1167500 | AT2G02310.1 | 25.714 | 280 | 176 | 9 | 21 | 287 | 47 | 307 | 4.56e-21 | 91.3 |
| Msa1167500 | AT1G56240.1 | 24.830 | 294 | 180 | 7 | 22 | 287 | 4 | 284 | 2.76e-20 | 89.0 |
| Msa1167500 | AT1G56250.1 | 24.828 | 290 | 177 | 7 | 22 | 283 | 4 | 280 | 9.89e-20 | 87.4 |
| Msa1167500 | AT2G02320.1 | 24.579 | 297 | 188 | 10 | 4 | 285 | 25 | 300 | 5.98e-19 | 85.5 |
| Msa1167500 | AT2G02300.1 | 33.117 | 154 | 96 | 4 | 11 | 163 | 28 | 175 | 4.53e-17 | 80.1 |
| Msa1167500 | AT4G19840.1 | 30.603 | 232 | 124 | 11 | 62 | 285 | 44 | 246 | 1.23e-12 | 66.6 |
Find 100 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTTGTTAAGGTAATTT+AGG | 0.218817 | 7_4:+60005402 | Msa1167500:three_prime_UTR |
| ACTCGCTCGCGTGCGTGTTA+TGG | 0.238373 | 7_4:+60002601 | Msa1167500:exon |
| TAGTTGTCGTTGAAATAATT+TGG | 0.246489 | 7_4:-60002522 | None:intergenic |
| GCGAAAGGTTTGTCTATTAC+TGG | 0.248170 | 7_4:+60003066 | Msa1167500:CDS |
| TCAACGTTCTTCTCTTACTA+TGG | 0.253730 | 7_4:+60002562 | Msa1167500:five_prime_UTR |
| CTGCTTCCGCTGATTCCGTT+TGG | 0.279164 | 7_4:+60002774 | Msa1167500:CDS |
| TGCTTCCGCTGATTCCGTTT+GGG | 0.281862 | 7_4:+60002775 | Msa1167500:CDS |
| AAGATCCCAACAAAGTATTC+TGG | 0.282202 | 7_4:-60005370 | None:intergenic |
| CTAACTATCAACATCTTCTA+AGG | 0.282361 | 7_4:+60002813 | Msa1167500:CDS |
| TTCCGACAGCGTAGTTCTTC+GGG | 0.292375 | 7_4:-60002842 | None:intergenic |
| TAGCATATTTGCAGCAAATA+TGG | 0.292809 | 7_4:+60004860 | Msa1167500:CDS |
| TTGTGGCTTGATAGGGTTAC+TGG | 0.305604 | 7_4:+60003021 | Msa1167500:CDS |
| ATAATTATACTCTCTCCTTT+AGG | 0.320102 | 7_4:+60004926 | Msa1167500:CDS |
| GGTGCTTCGTTGTCGAATCT+TGG | 0.327372 | 7_4:+60002623 | Msa1167500:CDS |
| ATTCCGACAGCGTAGTTCTT+CGG | 0.334823 | 7_4:-60002843 | None:intergenic |
| TACGCGCCGACCGAGTCTTT+TGG | 0.340105 | 7_4:-60004968 | None:intergenic |
| TCATTTCCCTGCTGTTCTAT+AGG | 0.348895 | 7_4:+60005493 | Msa1167500:three_prime_UTR |
| TAGGGTTTGCATGTCAATTT+CGG | 0.355678 | 7_4:+60003044 | Msa1167500:CDS |
| GCAATCATAAGCGTGGATAT+TGG | 0.361605 | 7_4:+60005115 | Msa1167500:CDS |
| CAATCATAAGCGTGGATATT+GGG | 0.364455 | 7_4:+60005116 | Msa1167500:CDS |
| TGCAGCAATTGTGGCTTGAT+AGG | 0.373892 | 7_4:+60003013 | Msa1167500:intron |
| ACCGTTTGATGATGGTAATA+AGG | 0.383826 | 7_4:+60002907 | Msa1167500:CDS |
| TGTACAGTCAATCTGTTTCA+TGG | 0.389000 | 7_4:-60005202 | None:intergenic |
| TTTGATCCCAACCATGGGTC+TGG | 0.400313 | 7_4:-60005002 | None:intergenic |
| GAATTGATGATCGGAGATAC+TGG | 0.406343 | 7_4:+60003088 | Msa1167500:CDS |
| AGAAGATGTTGATAGTTAGA+AGG | 0.406652 | 7_4:-60002809 | None:intergenic |
| TTACACAGCTACCTTTGTTA+AGG | 0.413923 | 7_4:+60005393 | Msa1167500:three_prime_UTR |
| AATATCCCAGAATACTTTGT+TGG | 0.417409 | 7_4:+60005364 | Msa1167500:three_prime_UTR |
| TCAGGGATGTCGCCGAGACT+TGG | 0.421026 | 7_4:-60002668 | None:intergenic |
| GGGTTCCTACTGAAGAATCT+AGG | 0.427818 | 7_4:+60003115 | Msa1167500:CDS |
| GAAATGATCAGACATAGAAT+AGG | 0.429253 | 7_4:+60005305 | Msa1167500:exon |
| GCTTGATAGGGTTACTGGTA+GGG | 0.443412 | 7_4:+60003026 | Msa1167500:CDS |
| GGCTTGATAGGGTTACTGGT+AGG | 0.446268 | 7_4:+60003025 | Msa1167500:CDS |
| GTGGTGTGGGAACATGTTAT+TGG | 0.449768 | 7_4:-60002458 | None:intergenic |
| AGATCCCAACAAAGTATTCT+GGG | 0.449929 | 7_4:-60005369 | None:intergenic |
| GTATAATTATCAGCAGGAAA+TGG | 0.451382 | 7_4:-60004913 | None:intergenic |
| GCGAGCTAAGTTACAAATCT+CGG | 0.453621 | 7_4:-60002729 | None:intergenic |
| ATATCCCAGAATACTTTGTT+GGG | 0.456744 | 7_4:+60005365 | Msa1167500:three_prime_UTR |
| GCTGTCAACTTCAGATGGTC+AGG | 0.460205 | 7_4:+60005041 | Msa1167500:CDS |
| ATGATCGGAGATACTGGACT+TGG | 0.466267 | 7_4:+60003094 | Msa1167500:CDS |
| AAATGATCAGACATAGAATA+GGG | 0.473844 | 7_4:+60005306 | Msa1167500:exon |
| AAAGCTGAGTTGGTATGATT+TGG | 0.475575 | 7_4:-60002482 | None:intergenic |
| CTCTCCTTTAGGCTTCACCT+TGG | 0.478658 | 7_4:+60004937 | Msa1167500:CDS |
| TGGTATGATTTGGTGTGGTG+TGG | 0.482664 | 7_4:-60002472 | None:intergenic |
| GTGGGTGAGTTTATTGTGAC+TGG | 0.484846 | 7_4:+60005150 | Msa1167500:CDS |
| AGCATCATCTGAGTGCTGCT+TGG | 0.485935 | 7_4:+60005065 | Msa1167500:CDS |
| GCAGCAATTGTGGCTTGATA+GGG | 0.487718 | 7_4:+60003014 | Msa1167500:intron |
| TAAGGTAATTTAGGATGTGA+TGG | 0.489704 | 7_4:+60005411 | Msa1167500:three_prime_UTR |
| TGACAAACCTATAGAACAGC+AGG | 0.491660 | 7_4:-60005500 | None:intergenic |
| GTTGACAGCTTAAATATGAC+TGG | 0.492659 | 7_4:-60005027 | None:intergenic |
| TTACCATCATCAAACGGTAA+AGG | 0.493520 | 7_4:-60002902 | None:intergenic |
| TGGAGCGATGGTTGAACCGT+TGG | 0.500130 | 7_4:-60002648 | None:intergenic |
| TGCATGTCAATTTCGGCGAA+AGG | 0.505228 | 7_4:+60003051 | Msa1167500:CDS |
| AAACCTTTACCGTTTGATGA+TGG | 0.507236 | 7_4:+60002899 | Msa1167500:CDS |
| GGTATGATTTGGTGTGGTGT+GGG | 0.511687 | 7_4:-60002471 | None:intergenic |
| CGAGCTAAGTTACAAATCTC+GGG | 0.515282 | 7_4:-60002728 | None:intergenic |
| TCAACCATCGCTCCAAGTCT+CGG | 0.520611 | 7_4:+60002656 | Msa1167500:CDS |
| ATTGACTGTACACATTCAAA+AGG | 0.523702 | 7_4:+60005213 | Msa1167500:CDS |
| TTGAGAGACCGCAAGGGAGG+CGG | 0.525474 | 7_4:+60005276 | Msa1167500:CDS |
| ATATGGTGGTTTGAAGTGGA+TGG | 0.529067 | 7_4:+60004877 | Msa1167500:CDS |
| CTATGACCAGACCCATGGTT+GGG | 0.529358 | 7_4:+60004996 | Msa1167500:CDS |
| TATGGTGGTTTGAAGTGGAT+GGG | 0.530496 | 7_4:+60004878 | Msa1167500:CDS |
| GAGAGAGTATAATTATCAGC+AGG | 0.530526 | 7_4:-60004919 | None:intergenic |
| ATGTAAATGTAAAGCTGAGT+TGG | 0.530610 | 7_4:-60002492 | None:intergenic |
| TCGTCCAAGGTGAAGCCTAA+AGG | 0.536499 | 7_4:-60004941 | None:intergenic |
| TTGCGGTCTCTCAACTCGCT+AGG | 0.541840 | 7_4:-60005267 | None:intergenic |
| ACCTTATTACCATCATCAAA+CGG | 0.548291 | 7_4:-60002908 | None:intergenic |
| GTTATTGGCGTCAACATCAA+AGG | 0.548839 | 7_4:-60002443 | None:intergenic |
| TTGTCGAATCTTGGATCCAA+CGG | 0.552308 | 7_4:+60002632 | Msa1167500:CDS |
| TTTAAGCTGTCAACTTCAGA+TGG | 0.554061 | 7_4:+60005036 | Msa1167500:CDS |
| CTATTACTGGAATTGATGAT+CGG | 0.557562 | 7_4:+60003079 | Msa1167500:CDS |
| TTGTCGTTGAAATAATTTGG+TGG | 0.561692 | 7_4:-60002519 | None:intergenic |
| TGGATATTGGGTAGATTACA+AGG | 0.565259 | 7_4:+60005128 | Msa1167500:CDS |
| CATATTTGCAGCAAATATGG+TGG | 0.572697 | 7_4:+60004863 | Msa1167500:CDS |
| GCAAATATGGTGGTTTGAAG+TGG | 0.575682 | 7_4:+60004873 | Msa1167500:CDS |
| TATTGGGTAGATTACAAGGT+GGG | 0.580797 | 7_4:+60005132 | Msa1167500:CDS |
| TAGCGAGTTGAGAGACCGCA+AGG | 0.584165 | 7_4:+60005269 | Msa1167500:CDS |
| ATGGTGGTTTGAAGTGGATG+GGG | 0.588532 | 7_4:+60004879 | Msa1167500:CDS |
| GTCGCCGAGACTTGGAGCGA+TGG | 0.591097 | 7_4:-60002660 | None:intergenic |
| TGTAACCTAGATTCTTCAGT+AGG | 0.600640 | 7_4:-60003120 | None:intergenic |
| AGGTAACTTAGATTCCCAAA+CGG | 0.601089 | 7_4:-60002789 | None:intergenic |
| TGCAGCTATGACCAGACCCA+TGG | 0.603310 | 7_4:+60004991 | Msa1167500:CDS |
| GCTATGACCAGACCCATGGT+TGG | 0.608469 | 7_4:+60004995 | Msa1167500:CDS |
| ACTGTCCACGATGATACATA+CGG | 0.613314 | 7_4:+60005093 | Msa1167500:CDS |
| GAGTTGAGAGACCGCAAGGG+AGG | 0.616169 | 7_4:+60005273 | Msa1167500:CDS |
| TGAGTTGGTATGATTTGGTG+TGG | 0.618701 | 7_4:-60002477 | None:intergenic |
| ATCCTAAATTACCTTAACAA+AGG | 0.629176 | 7_4:-60005404 | None:intergenic |
| GTGGTTTGAAGTGGATGGGG+AGG | 0.629340 | 7_4:+60004882 | Msa1167500:CDS |
| TGCCCGAAGAACTACGCTGT+CGG | 0.632314 | 7_4:+60002840 | Msa1167500:CDS |
| GACTGTACACATTCAAAAGG+TGG | 0.636157 | 7_4:+60005216 | Msa1167500:CDS |
| TGATCGGAGATACTGGACTT+GGG | 0.644140 | 7_4:+60003095 | Msa1167500:CDS |
| AGCGAGTTGAGAGACCGCAA+GGG | 0.651355 | 7_4:+60005270 | Msa1167500:CDS |
| AGATTCCCAAACGGAATCAG+CGG | 0.656920 | 7_4:-60002780 | None:intergenic |
| ACATACGGCAATCATAAGCG+TGG | 0.659891 | 7_4:+60005108 | Msa1167500:CDS |
| GACAAACCTATAGAACAGCA+GGG | 0.676920 | 7_4:-60005499 | None:intergenic |
| GATTGCCGTATGTATCATCG+TGG | 0.696598 | 7_4:-60005098 | None:intergenic |
| GCTAAGTTACAAATCTCGGG+AGG | 0.700399 | 7_4:-60002725 | None:intergenic |
| TAAATACAGAATCTACACAA+AGG | 0.700993 | 7_4:-60005239 | None:intergenic |
| TGGGATATTTGACATCACCA+AGG | 0.706573 | 7_4:-60005350 | None:intergenic |
| ATATTGGGTAGATTACAAGG+TGG | 0.766319 | 7_4:+60005131 | Msa1167500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTACCT+TGG | + | chr7_4:60005333-60005352 | Msa1167500:three_prime_UTR | 10.0% |
| !! | TGTAATTAAAAACAAGTATT+GGG | - | chr7_4:60003242-60003261 | None:intergenic | 15.0% |
| !! | TTGTAATTAAAAACAAGTAT+TGG | - | chr7_4:60003243-60003262 | None:intergenic | 15.0% |
| !! | TTTCATAAGTTAAATTAAGA+TGG | + | chr7_4:60003381-60003400 | Msa1167500:intron | 15.0% |
| !! | AATTAAGATGGAAATATTAT+TGG | + | chr7_4:60003393-60003412 | Msa1167500:intron | 15.0% |
| !!! | AAAAAATATGTTGACTTTTA+AGG | + | chr7_4:60003818-60003837 | Msa1167500:intron | 15.0% |
| !!! | TTGTAAACTTAATTTTCAAT+GGG | + | chr7_4:60004016-60004035 | Msa1167500:intron | 15.0% |
| !! | GTTTATTGTTTCAAATCATT+CGG | + | chr7_4:60002959-60002978 | Msa1167500:intron | 20.0% |
| !!! | TTTTTATTGATGATGGAATT+AGG | + | chr7_4:60002986-60003005 | Msa1167500:intron | 20.0% |
| !! | ATTACAAGACTTGAAATATT+TGG | - | chr7_4:60003534-60003553 | None:intergenic | 20.0% |
| !!! | TTAAATTCTTTTAATCCAAG+AGG | + | chr7_4:60003691-60003710 | Msa1167500:intron | 20.0% |
| !!! | GTTGTAAACTTAATTTTCAA+TGG | + | chr7_4:60004015-60004034 | Msa1167500:intron | 20.0% |
| !! | AATTCAATTGAACTGTTAAT+TGG | + | chr7_4:60004104-60004123 | Msa1167500:intron | 20.0% |
| !! | ATTCAATTGAACTGTTAATT+GGG | + | chr7_4:60004105-60004124 | Msa1167500:intron | 20.0% |
| !! | TTAATAAAACATCAACATGT+AGG | + | chr7_4:60004619-60004638 | Msa1167500:intron | 20.0% |
| !! | TTTCTATTATCATTCATTTC+AGG | + | chr7_4:60004827-60004846 | Msa1167500:intron | 20.0% |
| ! | TAGTTGTCGTTGAAATAATT+TGG | - | chr7_4:60002525-60002544 | None:intergenic | 25.0% |
| !!! | CGGTTTATTTTTATTGATGA+TGG | + | chr7_4:60002979-60002998 | Msa1167500:intron | 25.0% |
| !!! | CTTTTTCTCACATTTAAAGT+TGG | + | chr7_4:60003201-60003220 | Msa1167500:intron | 25.0% |
| !!! | TAATTTTTGAGAGCATGTTT+GGG | + | chr7_4:60003266-60003285 | Msa1167500:intron | 25.0% |
| ! | AGTTTATTTACAGTTTAGCT+AGG | - | chr7_4:60003490-60003509 | None:intergenic | 25.0% |
| ! | ACTTGAAATATTTGGATCTT+AGG | - | chr7_4:60003526-60003545 | None:intergenic | 25.0% |
| !!! | ATTTTGAGATAAGTGGAAAT+TGG | + | chr7_4:60003653-60003672 | Msa1167500:intron | 25.0% |
| ! | TGGAAATTGGATTATTACTT+TGG | + | chr7_4:60003666-60003685 | Msa1167500:intron | 25.0% |
| ! | ACTCTTGAATATAGTCTTTA+TGG | + | chr7_4:60003741-60003760 | Msa1167500:intron | 25.0% |
| ! | TTGAATATAGTCTTTATGGT+TGG | + | chr7_4:60003745-60003764 | Msa1167500:intron | 25.0% |
| ! | GATAGACAAATTATTGTAAG+AGG | + | chr7_4:60004489-60004508 | Msa1167500:intron | 25.0% |
| !!! | ATTGGAATAGTTTTACGAAT+GGG | - | chr7_4:60004694-60004713 | None:intergenic | 25.0% |
| ! | ATAATTATACTCTCTCCTTT+AGG | + | chr7_4:60004926-60004945 | Msa1167500:CDS | 25.0% |
| ! | TAAATACAGAATCTACACAA+AGG | - | chr7_4:60005242-60005261 | None:intergenic | 25.0% |
| ! | AAATGATCAGACATAGAATA+GGG | + | chr7_4:60005306-60005325 | Msa1167500:exon | 25.0% |
| ! | TACCTTTGTTAAGGTAATTT+AGG | + | chr7_4:60005402-60005421 | Msa1167500:three_prime_UTR | 25.0% |
| ! | ATCCTAAATTACCTTAACAA+AGG | - | chr7_4:60005407-60005426 | None:intergenic | 25.0% |
| ATGTAAATGTAAAGCTGAGT+TGG | - | chr7_4:60002495-60002514 | None:intergenic | 30.0% | |
| TTGTCGTTGAAATAATTTGG+TGG | - | chr7_4:60002522-60002541 | None:intergenic | 30.0% | |
| !! | AGAAGATGTTGATAGTTAGA+AGG | - | chr7_4:60002812-60002831 | None:intergenic | 30.0% |
| CTAACTATCAACATCTTCTA+AGG | + | chr7_4:60002813-60002832 | Msa1167500:CDS | 30.0% | |
| ACCTTATTACCATCATCAAA+CGG | - | chr7_4:60002911-60002930 | None:intergenic | 30.0% | |
| !! | TTTGATGATGGTAATAAGGT+AGG | + | chr7_4:60002911-60002930 | Msa1167500:intron | 30.0% |
| !! | TTGATGATGGTAATAAGGTA+GGG | + | chr7_4:60002912-60002931 | Msa1167500:intron | 30.0% |
| ! | CTATTACTGGAATTGATGAT+CGG | + | chr7_4:60003079-60003098 | Msa1167500:CDS | 30.0% |
| !! | GTAATTTTTGAGAGCATGTT+TGG | + | chr7_4:60003265-60003284 | Msa1167500:intron | 30.0% |
| !!! | GCTTGTAATTTTGAGATAAG+TGG | + | chr7_4:60003646-60003665 | Msa1167500:intron | 30.0% |
| CAACTCTTCTTGAAATTGAA+TGG | - | chr7_4:60003851-60003870 | None:intergenic | 30.0% | |
| ! | TATTTCTCTGGTTCAAACAT+AGG | + | chr7_4:60003892-60003911 | Msa1167500:intron | 30.0% |
| CAACAAAACACATAGAATCA+GGG | - | chr7_4:60003969-60003988 | None:intergenic | 30.0% | |
| ACAACAAAACACATAGAATC+AGG | - | chr7_4:60003970-60003989 | None:intergenic | 30.0% | |
| ATTATAATTGAGCCTCCTAA+AGG | + | chr7_4:60004282-60004301 | Msa1167500:intron | 30.0% | |
| ! | AACATCTTGTTATCAATGCT+AGG | + | chr7_4:60004348-60004367 | Msa1167500:intron | 30.0% |
| ! | ACATCTTGTTATCAATGCTA+GGG | + | chr7_4:60004349-60004368 | Msa1167500:intron | 30.0% |
| ATTAACCTGTGTTACACTAT+AGG | - | chr7_4:60004536-60004555 | None:intergenic | 30.0% | |
| ATTAACCTGTGTTACACTAT+AGG | - | chr7_4:60004536-60004555 | None:intergenic | 30.0% | |
| AAAACATCAACATGTAGGTT+TGG | + | chr7_4:60004624-60004643 | Msa1167500:intron | 30.0% | |
| !! | AATAGTTTTACGAATGGGAA+TGG | - | chr7_4:60004689-60004708 | None:intergenic | 30.0% |
| !! | GATTGGAATAGTTTTACGAA+TGG | - | chr7_4:60004695-60004714 | None:intergenic | 30.0% |
| ATAGCTTATAAGCAGTAGAT+TGG | - | chr7_4:60004712-60004731 | None:intergenic | 30.0% | |
| ! | CTTAATAGTGCTACTATTAC+TGG | - | chr7_4:60004747-60004766 | None:intergenic | 30.0% |
| TAGCATATTTGCAGCAAATA+TGG | + | chr7_4:60004860-60004879 | Msa1167500:CDS | 30.0% | |
| GTATAATTATCAGCAGGAAA+TGG | - | chr7_4:60004916-60004935 | None:intergenic | 30.0% | |
| !! | GAGAATCTAACTTTTGTTGT+AGG | - | chr7_4:60005183-60005202 | None:intergenic | 30.0% |
| ATTGACTGTACACATTCAAA+AGG | + | chr7_4:60005213-60005232 | Msa1167500:CDS | 30.0% | |
| GAAATGATCAGACATAGAAT+AGG | + | chr7_4:60005305-60005324 | Msa1167500:exon | 30.0% | |
| AATATCCCAGAATACTTTGT+TGG | + | chr7_4:60005364-60005383 | Msa1167500:three_prime_UTR | 30.0% | |
| ATATCCCAGAATACTTTGTT+GGG | + | chr7_4:60005365-60005384 | Msa1167500:three_prime_UTR | 30.0% | |
| ! | TAAGGTAATTTAGGATGTGA+TGG | + | chr7_4:60005411-60005430 | Msa1167500:three_prime_UTR | 30.0% |
| !! | AAAGCTGAGTTGGTATGATT+TGG | - | chr7_4:60002485-60002504 | None:intergenic | 35.0% |
| TCAACGTTCTTCTCTTACTA+TGG | + | chr7_4:60002562-60002581 | Msa1167500:five_prime_UTR | 35.0% | |
| AGGTAACTTAGATTCCCAAA+CGG | - | chr7_4:60002792-60002811 | None:intergenic | 35.0% | |
| AAACCTTTACCGTTTGATGA+TGG | + | chr7_4:60002899-60002918 | Msa1167500:CDS | 35.0% | |
| TTACCATCATCAAACGGTAA+AGG | - | chr7_4:60002905-60002924 | None:intergenic | 35.0% | |
| !! | ACCGTTTGATGATGGTAATA+AGG | + | chr7_4:60002907-60002926 | Msa1167500:CDS | 35.0% |
| ! | TTAGGTTTTTGCAGCAATTG+TGG | + | chr7_4:60003004-60003023 | Msa1167500:intron | 35.0% |
| TAGGGTTTGCATGTCAATTT+CGG | + | chr7_4:60003044-60003063 | Msa1167500:CDS | 35.0% | |
| TGTAACCTAGATTCTTCAGT+AGG | - | chr7_4:60003123-60003142 | None:intergenic | 35.0% | |
| TTTGGATCTTAGGATGCATT+AGG | - | chr7_4:60003516-60003535 | None:intergenic | 35.0% | |
| GGAATTGTTGAGACTATAAC+AGG | - | chr7_4:60003591-60003610 | None:intergenic | 35.0% | |
| TAGTCTCAACAATTCCTGAT+TGG | + | chr7_4:60003595-60003614 | Msa1167500:intron | 35.0% | |
| TTTAATCCAAGAGGATTGCT+AGG | + | chr7_4:60003700-60003719 | Msa1167500:intron | 35.0% | |
| CAATGGGAATGTTAAATTGC+TGG | + | chr7_4:60004032-60004051 | Msa1167500:intron | 35.0% | |
| GGCAGTGTAGTTTCTAATAT+TGG | - | chr7_4:60004217-60004236 | None:intergenic | 35.0% | |
| AAACTGCATCTATAGTGAGA+AGG | - | chr7_4:60004238-60004257 | None:intergenic | 35.0% | |
| CAGGTTAATCTCACAGAAAA+AGG | + | chr7_4:60004582-60004601 | Msa1167500:intron | 35.0% | |
| TACGAATGGGAATGGAAATT+TGG | - | chr7_4:60004681-60004700 | None:intergenic | 35.0% | |
| CATATTTGCAGCAAATATGG+TGG | + | chr7_4:60004863-60004882 | Msa1167500:CDS | 35.0% | |
| ! | GAGAGAGTATAATTATCAGC+AGG | - | chr7_4:60004922-60004941 | None:intergenic | 35.0% |
| GTTGACAGCTTAAATATGAC+TGG | - | chr7_4:60005030-60005049 | None:intergenic | 35.0% | |
| TTTAAGCTGTCAACTTCAGA+TGG | + | chr7_4:60005036-60005055 | Msa1167500:CDS | 35.0% | |
| CAATCATAAGCGTGGATATT+GGG | + | chr7_4:60005116-60005135 | Msa1167500:CDS | 35.0% | |
| TGGATATTGGGTAGATTACA+AGG | + | chr7_4:60005128-60005147 | Msa1167500:CDS | 35.0% | |
| ATATTGGGTAGATTACAAGG+TGG | + | chr7_4:60005131-60005150 | Msa1167500:CDS | 35.0% | |
| TATTGGGTAGATTACAAGGT+GGG | + | chr7_4:60005132-60005151 | Msa1167500:CDS | 35.0% | |
| TGTACAGTCAATCTGTTTCA+TGG | - | chr7_4:60005205-60005224 | None:intergenic | 35.0% | |
| ! | AGATCCCAACAAAGTATTCT+GGG | - | chr7_4:60005372-60005391 | None:intergenic | 35.0% |
| ! | AAGATCCCAACAAAGTATTC+TGG | - | chr7_4:60005373-60005392 | None:intergenic | 35.0% |
| TTACACAGCTACCTTTGTTA+AGG | + | chr7_4:60005393-60005412 | Msa1167500:three_prime_UTR | 35.0% | |
| GTTATTGGCGTCAACATCAA+AGG | - | chr7_4:60002446-60002465 | None:intergenic | 40.0% | |
| !! | TGAGTTGGTATGATTTGGTG+TGG | - | chr7_4:60002480-60002499 | None:intergenic | 40.0% |
| TTGTCGAATCTTGGATCCAA+CGG | + | chr7_4:60002632-60002651 | Msa1167500:CDS | 40.0% | |
| CGAGCTAAGTTACAAATCTC+GGG | - | chr7_4:60002731-60002750 | None:intergenic | 40.0% | |
| GCGAGCTAAGTTACAAATCT+CGG | - | chr7_4:60002732-60002751 | None:intergenic | 40.0% | |
| GCGAAAGGTTTGTCTATTAC+TGG | + | chr7_4:60003066-60003085 | Msa1167500:CDS | 40.0% | |
| ! | GAATTGATGATCGGAGATAC+TGG | + | chr7_4:60003088-60003107 | Msa1167500:CDS | 40.0% |
| !! | CAATTCCTGATTGGTTTGCT+TGG | + | chr7_4:60003604-60003623 | Msa1167500:intron | 40.0% |
| ACAAACCAAGCAAACCAATC+AGG | - | chr7_4:60003612-60003631 | None:intergenic | 40.0% | |
| !! | GCGACTTGCTAATATTTCTC+TGG | + | chr7_4:60003880-60003899 | Msa1167500:intron | 40.0% |
| ! | TGCGACATTTTACTGATGAC+CGG | + | chr7_4:60004257-60004276 | Msa1167500:intron | 40.0% |
| GGAGGCTCAATTATAATTGC+CGG | - | chr7_4:60004279-60004298 | None:intergenic | 40.0% | |
| !!! | TTTGCGACTTTTGGTGTCAT+AGG | + | chr7_4:60004313-60004332 | Msa1167500:intron | 40.0% |
| CGAAGTTTAGCAGAACTTGT+TGG | + | chr7_4:60004444-60004463 | Msa1167500:intron | 40.0% | |
| TACAGCCTATAGTGTAACAC+AGG | + | chr7_4:60004563-60004582 | Msa1167500:intron | 40.0% | |
| CTGCTCTGCGTAGTTTATTA+TGG | + | chr7_4:60004647-60004666 | Msa1167500:intron | 40.0% | |
| GCAAATATGGTGGTTTGAAG+TGG | + | chr7_4:60004873-60004892 | Msa1167500:CDS | 40.0% | |
| ! | ATATGGTGGTTTGAAGTGGA+TGG | + | chr7_4:60004877-60004896 | Msa1167500:CDS | 40.0% |
| ! | TATGGTGGTTTGAAGTGGAT+GGG | + | chr7_4:60004878-60004897 | Msa1167500:CDS | 40.0% |
| !! | GTCTTTTGGAAAATCGTCCA+AGG | - | chr7_4:60004957-60004976 | None:intergenic | 40.0% |
| ! | GGACGATTTTCCAAAAGACT+CGG | + | chr7_4:60004958-60004977 | Msa1167500:CDS | 40.0% |
| !! | GATTTTCCAAAAGACTCGGT+CGG | + | chr7_4:60004962-60004981 | Msa1167500:CDS | 40.0% |
| ACTGTCCACGATGATACATA+CGG | + | chr7_4:60005093-60005112 | Msa1167500:CDS | 40.0% | |
| GCAATCATAAGCGTGGATAT+TGG | + | chr7_4:60005115-60005134 | Msa1167500:CDS | 40.0% | |
| GACTGTACACATTCAAAAGG+TGG | + | chr7_4:60005216-60005235 | Msa1167500:CDS | 40.0% | |
| TGGGATATTTGACATCACCA+AGG | - | chr7_4:60005353-60005372 | None:intergenic | 40.0% | |
| TCATTTCCCTGCTGTTCTAT+AGG | + | chr7_4:60005493-60005512 | Msa1167500:three_prime_UTR | 40.0% | |
| GACAAACCTATAGAACAGCA+GGG | - | chr7_4:60005502-60005521 | None:intergenic | 40.0% | |
| TGACAAACCTATAGAACAGC+AGG | - | chr7_4:60005503-60005522 | None:intergenic | 40.0% | |
| GTGGTGTGGGAACATGTTAT+TGG | - | chr7_4:60002461-60002480 | None:intergenic | 45.0% | |
| !! | GGTATGATTTGGTGTGGTGT+GGG | - | chr7_4:60002474-60002493 | None:intergenic | 45.0% |
| !! | TGGTATGATTTGGTGTGGTG+TGG | - | chr7_4:60002475-60002494 | None:intergenic | 45.0% |
| ! | CACGAGCAACACAGTTTTCA+GGG | - | chr7_4:60002688-60002707 | None:intergenic | 45.0% |
| ! | ACACGAGCAACACAGTTTTC+AGG | - | chr7_4:60002689-60002708 | None:intergenic | 45.0% |
| GCTAAGTTACAAATCTCGGG+AGG | - | chr7_4:60002728-60002747 | None:intergenic | 45.0% | |
| AGATTCCCAAACGGAATCAG+CGG | - | chr7_4:60002783-60002802 | None:intergenic | 45.0% | |
| ATTCCGACAGCGTAGTTCTT+CGG | - | chr7_4:60002846-60002865 | None:intergenic | 45.0% | |
| TGCAGCAATTGTGGCTTGAT+AGG | + | chr7_4:60003013-60003032 | Msa1167500:intron | 45.0% | |
| GCAGCAATTGTGGCTTGATA+GGG | + | chr7_4:60003014-60003033 | Msa1167500:intron | 45.0% | |
| TTGTGGCTTGATAGGGTTAC+TGG | + | chr7_4:60003021-60003040 | Msa1167500:CDS | 45.0% | |
| GCTTGATAGGGTTACTGGTA+GGG | + | chr7_4:60003026-60003045 | Msa1167500:CDS | 45.0% | |
| TGCATGTCAATTTCGGCGAA+AGG | + | chr7_4:60003051-60003070 | Msa1167500:CDS | 45.0% | |
| ATGATCGGAGATACTGGACT+TGG | + | chr7_4:60003094-60003113 | Msa1167500:CDS | 45.0% | |
| TGATCGGAGATACTGGACTT+GGG | + | chr7_4:60003095-60003114 | Msa1167500:CDS | 45.0% | |
| GGGTTCCTACTGAAGAATCT+AGG | + | chr7_4:60003115-60003134 | Msa1167500:CDS | 45.0% | |
| ! | TTGAGAGCATGTTTGGGCTT+TGG | + | chr7_4:60003272-60003291 | Msa1167500:intron | 45.0% |
| TGTGTTCCTAGCAATCCTCT+TGG | - | chr7_4:60003709-60003728 | None:intergenic | 45.0% | |
| !! | CAAAGAGAAGCACCTTTAGG+AGG | - | chr7_4:60004297-60004316 | None:intergenic | 45.0% |
| !! | TCGCAAAGAGAAGCACCTTT+AGG | - | chr7_4:60004300-60004319 | None:intergenic | 45.0% |
| ! | GTGCTTCTCTTTGCGACTTT+TGG | + | chr7_4:60004304-60004323 | Msa1167500:intron | 45.0% |
| TGCAGCCTATAGTGTAACAC+AGG | + | chr7_4:60004528-60004547 | Msa1167500:intron | 45.0% | |
| ! | ATGGTGGTTTGAAGTGGATG+GGG | + | chr7_4:60004879-60004898 | Msa1167500:CDS | 45.0% |
| ! | TGGCTTTTGATCCCAACCAT+GGG | - | chr7_4:60005010-60005029 | None:intergenic | 45.0% |
| GATTGCCGTATGTATCATCG+TGG | - | chr7_4:60005101-60005120 | None:intergenic | 45.0% | |
| ACATACGGCAATCATAAGCG+TGG | + | chr7_4:60005108-60005127 | Msa1167500:CDS | 45.0% | |
| GTGGGTGAGTTTATTGTGAC+TGG | + | chr7_4:60005150-60005169 | Msa1167500:CDS | 45.0% | |
| GGTGCTTCGTTGTCGAATCT+TGG | + | chr7_4:60002623-60002642 | Msa1167500:CDS | 50.0% | |
| TCAACCATCGCTCCAAGTCT+CGG | + | chr7_4:60002656-60002675 | Msa1167500:CDS | 50.0% | |
| ! | CGCTTAAATCGCGCTTTTCG+CGG | + | chr7_4:60002749-60002768 | Msa1167500:CDS | 50.0% |
| !! | TGCTTCCGCTGATTCCGTTT+GGG | + | chr7_4:60002775-60002794 | Msa1167500:CDS | 50.0% |
| TTCCGACAGCGTAGTTCTTC+GGG | - | chr7_4:60002845-60002864 | None:intergenic | 50.0% | |
| GGCTTGATAGGGTTACTGGT+AGG | + | chr7_4:60003025-60003044 | Msa1167500:CDS | 50.0% | |
| CGAGAACTCGTGAAGACTTC+AGG | - | chr7_4:60004426-60004445 | None:intergenic | 50.0% | |
| CTCTCCTTTAGGCTTCACCT+TGG | + | chr7_4:60004937-60004956 | Msa1167500:CDS | 50.0% | |
| TCGTCCAAGGTGAAGCCTAA+AGG | - | chr7_4:60004944-60004963 | None:intergenic | 50.0% | |
| CTATGACCAGACCCATGGTT+GGG | + | chr7_4:60004996-60005015 | Msa1167500:CDS | 50.0% | |
| TTTGATCCCAACCATGGGTC+TGG | - | chr7_4:60005005-60005024 | None:intergenic | 50.0% | |
| !! | CTGGCTTTTGATCCCAACCA+TGG | - | chr7_4:60005011-60005030 | None:intergenic | 50.0% |
| GCTGTCAACTTCAGATGGTC+AGG | + | chr7_4:60005041-60005060 | Msa1167500:CDS | 50.0% | |
| ! | AGCATCATCTGAGTGCTGCT+TGG | + | chr7_4:60005065-60005084 | Msa1167500:CDS | 50.0% |
| TCAAAAAACCGCCTCCCTTG+CGG | - | chr7_4:60005287-60005306 | None:intergenic | 50.0% | |
| TGGAGCGATGGTTGAACCGT+TGG | - | chr7_4:60002651-60002670 | None:intergenic | 55.0% | |
| !! | CTGCTTCCGCTGATTCCGTT+TGG | + | chr7_4:60002774-60002793 | Msa1167500:CDS | 55.0% |
| TGCCCGAAGAACTACGCTGT+CGG | + | chr7_4:60002840-60002859 | Msa1167500:CDS | 55.0% | |
| ! | GTGGTTTGAAGTGGATGGGG+AGG | + | chr7_4:60004882-60004901 | Msa1167500:CDS | 55.0% |
| TGCAGCTATGACCAGACCCA+TGG | + | chr7_4:60004991-60005010 | Msa1167500:CDS | 55.0% | |
| GCTATGACCAGACCCATGGT+TGG | + | chr7_4:60004995-60005014 | Msa1167500:CDS | 55.0% | |
| TTGCGGTCTCTCAACTCGCT+AGG | - | chr7_4:60005270-60005289 | None:intergenic | 55.0% | |
| ! | TAGCGAGTTGAGAGACCGCA+AGG | + | chr7_4:60005269-60005288 | Msa1167500:CDS | 55.0% |
| ! | AGCGAGTTGAGAGACCGCAA+GGG | + | chr7_4:60005270-60005289 | Msa1167500:CDS | 55.0% |
| ACTCGCTCGCGTGCGTGTTA+TGG | + | chr7_4:60002601-60002620 | Msa1167500:exon | 60.0% | |
| CTCGCTCGCGTGCGTGTTAT+GGG | + | chr7_4:60002602-60002621 | Msa1167500:exon | 60.0% | |
| TCAGGGATGTCGCCGAGACT+TGG | - | chr7_4:60002671-60002690 | None:intergenic | 60.0% | |
| !! | TACGCGCCGACCGAGTCTTT+TGG | - | chr7_4:60004971-60004990 | None:intergenic | 60.0% |
| GAGTTGAGAGACCGCAAGGG+AGG | + | chr7_4:60005273-60005292 | Msa1167500:CDS | 60.0% | |
| TTGAGAGACCGCAAGGGAGG+CGG | + | chr7_4:60005276-60005295 | Msa1167500:CDS | 60.0% | |
| GTCGCCGAGACTTGGAGCGA+TGG | - | chr7_4:60002663-60002682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 60002430 | 60005564 | 60002430 | ID=Msa1167500;Name=Msa1167500 |
| chr7_4 | mRNA | 60002430 | 60005564 | 60002430 | ID=Msa1167500-mRNA-1;Parent=Msa1167500;Name=Msa1167500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190|1|1|1|1|1|3|253|296 |
| chr7_4 | exon | 60002430 | 60002928 | 60002430 | ID=Msa1167500-mRNA-1:exon:18669;Parent=Msa1167500-mRNA-1 |
| chr7_4 | exon | 60003018 | 60003136 | 60003018 | ID=Msa1167500-mRNA-1:exon:18670;Parent=Msa1167500-mRNA-1 |
| chr7_4 | exon | 60004849 | 60005564 | 60004849 | ID=Msa1167500-mRNA-1:exon:18671;Parent=Msa1167500-mRNA-1 |
| chr7_4 | five_prime_UTR | 60002430 | 60002619 | 60002430 | ID=Msa1167500-mRNA-1:five_prime_utr;Parent=Msa1167500-mRNA-1 |
| chr7_4 | CDS | 60002620 | 60002928 | 60002620 | ID=Msa1167500-mRNA-1:cds;Parent=Msa1167500-mRNA-1 |
| chr7_4 | CDS | 60003018 | 60003136 | 60003018 | ID=Msa1167500-mRNA-1:cds;Parent=Msa1167500-mRNA-1 |
| chr7_4 | CDS | 60004849 | 60005311 | 60004849 | ID=Msa1167500-mRNA-1:cds;Parent=Msa1167500-mRNA-1 |
| chr7_4 | three_prime_UTR | 60005312 | 60005564 | 60005312 | ID=Msa1167500-mRNA-1:three_prime_utr;Parent=Msa1167500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
