AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524040 MtrunA17_Chr3g0145261 97.149 491 10 2 1 491 1 487 0.0 984
Msa0524040 MtrunA17_Chr8g0391391 61.966 468 172 4 27 491 29 493 0.0 601
Msa0524040 MtrunA17_Chr1g0195271 59.091 462 186 2 27 488 38 496 0.0 563
Msa0524040 MtrunA17_Chr3g0119821 57.602 467 194 3 23 488 30 493 0.0 559
Msa0524040 MtrunA17_Chr3g0080171 57.082 466 191 5 28 491 25 483 0.0 530
Msa0524040 MtrunA17_Chr4g0018361 54.970 493 204 7 6 488 5 489 0.0 523
Msa0524040 MtrunA17_Chr4g0018301 52.891 467 212 4 22 488 39 497 4.03e-180 514
Msa0524040 MtrunA17_Chr8g0388051 50.427 468 221 6 26 486 26 489 7.54e-163 475
Msa0524040 MtrunA17_Chr5g0397201 51.188 463 212 6 27 486 39 490 1.59e-162 469
Msa0524040 MtrunA17_Chr3g0119371 47.035 489 245 7 9 489 24 506 9.68e-154 448
Msa0524040 MtrunA17_Chr5g0439311 42.742 496 268 8 3 489 9 497 1.08e-147 432
Msa0524040 MtrunA17_Chr1g0164201 47.228 487 241 10 9 489 6 482 1.17e-142 418
Msa0524040 MtrunA17_Chr4g0038131 46.681 467 237 6 28 486 28 490 1.15e-141 421
Msa0524040 MtrunA17_Chr3g0086311 44.672 488 250 7 1 486 8 477 3.60e-139 409
Msa0524040 MtrunA17_Chr3g0142501 42.827 474 250 10 27 489 56 519 1.09e-120 363
Msa0524040 MtrunA17_Chr5g0397181 44.444 405 211 6 89 490 1 394 4.93e-120 357
Msa0524040 MtrunA17_Chr8g0372031 42.283 473 252 8 29 490 64 526 4.90e-116 352
Msa0524040 MtrunA17_Chr3g0136381 42.895 380 203 5 9 386 10 377 1.28e-109 332
Msa0524040 MtrunA17_Chr5g0444721 36.216 555 277 12 5 486 12 562 2.00e-105 325
Msa0524040 MtrunA17_Chr4g0018341 50.530 283 131 4 207 488 2 276 3.69e-105 315
Msa0524040 MtrunA17_Chr2g0291461 39.096 509 264 16 10 485 91 586 4.42e-89 285
Msa0524040 MtrunA17_Chr3g0120661 38.193 487 258 17 28 485 116 588 3.07e-86 277
Msa0524040 MtrunA17_Chr3g0126111 35.306 507 290 16 7 485 84 580 2.65e-85 274
Msa0524040 MtrunA17_Chr4g0018351 59.016 183 74 1 28 210 30 211 9.07e-65 208
Msa0524040 MtrunA17_Chr7g0269571 52.096 167 69 1 333 488 43 209 7.27e-57 189
Msa0524040 MtrunA17_Chr4g0022271 54.167 144 60 2 333 475 20 158 1.32e-45 157
Msa0524040 MtrunA17_Chr1g0164181 45.509 167 89 2 321 486 164 329 5.16e-41 149
Msa0524040 MtrunA17_Chr1g0164181 52.632 152 71 1 71 221 4 155 1.61e-39 145
Msa0524040 MtrunA17_Chr4g0072811 37.342 158 93 3 331 485 8 162 8.22e-26 104
Msa0524040 MtrunA17_Chr3g0136371 48.936 94 46 2 386 478 1 93 3.73e-22 91.3
Msa0524040 MtrunA17_Chr7g0269561 45.238 84 32 1 239 322 25 94 2.77e-18 80.9
Msa0524040 MtrunA17_Chr5g0397171 70.455 44 13 0 27 70 40 83 4.43e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524040 AT4G39010.1 74.468 470 119 1 23 491 24 493 0.0 744
Msa0524040 AT1G70710.1 60.081 491 191 3 3 491 1 488 0.0 615
Msa0524040 AT4G39000.1 57.819 486 204 1 7 491 4 489 0.0 591
Msa0524040 AT1G23210.1 57.230 491 205 3 3 491 1 488 0.0 590
Msa0524040 AT4G38990.2 57.377 488 199 4 10 491 8 492 0.0 578
Msa0524040 AT4G39010.2 72.253 364 100 1 23 385 24 387 0.0 572
Msa0524040 AT4G02290.1 58.874 462 187 2 27 488 51 509 0.0 571
Msa0524040 AT1G02800.1 59.660 471 185 3 18 488 33 498 0.0 565
Msa0524040 AT1G22880.1 55.144 486 210 4 7 491 3 481 0.0 516
Msa0524040 AT1G71380.1 54.545 484 211 5 8 490 5 480 6.16e-180 513
Msa0524040 AT4G02290.2 57.250 400 168 2 89 488 1 397 9.25e-167 477
Msa0524040 AT4G09740.1 49.691 485 228 6 12 491 4 477 5.25e-159 460
Msa0524040 AT4G11050.2 48.632 475 233 6 23 490 21 491 8.98e-159 462
Msa0524040 AT4G11050.1 48.632 475 233 6 23 490 21 491 7.35e-158 462
Msa0524040 AT4G11050.3 48.632 475 233 6 23 490 21 491 1.02e-157 462
Msa0524040 AT4G23560.1 48.454 485 237 5 9 491 4 477 6.52e-157 454
Msa0524040 AT1G64390.1 48.832 471 230 6 23 486 20 486 2.05e-156 458
Msa0524040 AT1G22880.2 55.446 404 172 4 89 491 1 397 1.05e-151 438
Msa0524040 AT2G32990.1 44.266 497 258 7 6 486 9 502 5.43e-148 434
Msa0524040 AT2G44540.1 46.362 481 245 7 11 486 16 488 3.95e-139 410
Msa0524040 AT2G44570.1 47.433 487 240 9 6 486 13 489 6.51e-139 409
Msa0524040 AT2G44550.1 46.998 483 240 9 9 486 16 487 8.64e-139 409
Msa0524040 AT2G44560.1 46.362 481 245 7 11 486 16 488 1.58e-136 403
Msa0524040 AT3G43860.2 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa0524040 AT3G43860.1 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa0524040 AT4G38990.1 55.618 356 129 3 10 364 8 335 2.50e-134 392
Msa0524040 AT1G48930.1 47.109 467 236 6 27 486 29 491 2.57e-132 397
Msa0524040 AT1G75680.1 45.852 458 231 8 29 479 58 505 7.03e-128 382
Msa0524040 AT1G19940.2 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa0524040 AT1G19940.1 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa0524040 AT1G22880.3 54.878 328 140 4 7 333 3 323 1.00e-110 332
Msa0524040 AT2G44570.2 43.890 401 210 8 6 401 13 403 7.07e-94 291
Msa0524040 AT1G19940.3 42.005 369 201 7 25 386 45 407 6.54e-88 276
Msa0524040 AT5G49720.1 37.718 517 276 16 3 485 79 583 7.75e-83 268
Msa0524040 AT1G65610.1 35.391 486 274 14 28 486 116 588 6.47e-81 263
Msa0524040 AT4G24260.1 36.327 490 268 16 28 486 108 584 1.20e-69 234
Msa0524040 AT4G24260.3 34.872 390 214 15 28 386 108 488 7.01e-41 153
Msa0524040 AT4G24260.2 36.562 320 168 12 28 319 108 420 1.60e-39 149
Msa0524040 AT3G42153.1 42.708 96 47 3 240 331 16 107 7.13e-15 71.2

Find 175 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTTCTTCTTAACTTAT+TGG 0.124007 3_4:+77482072 Msa0524040:three_prime_UTR
GCCGGTGATAACATCAAATT+TGG 0.145877 3_4:+77478139 Msa0524040:CDS
GAGATTCAACATTTCCTTCT+AGG 0.166797 3_4:-77481104 None:intergenic
ATTAACCTGTTAAGGATTAA+TGG 0.215794 3_4:-77481698 None:intergenic
CTGTTTGTGTCCATGTCTTC+TGG 0.223582 3_4:-77479283 None:intergenic
TTCAATATGCAGACAGTTAC+AGG 0.227377 3_4:+77479449 Msa0524040:CDS
ATGTGTGAACTTGATGTTTC+AGG 0.237520 3_4:-77481174 None:intergenic
TTTGCTGGCCAATGCCATTT+TGG 0.261265 3_4:-77477900 None:intergenic
CATTGCTTTGAATGTAGTTT+AGG 0.285334 3_4:-77480723 None:intergenic
ATAAACATTGCCACAATTGA+TGG 0.289598 3_4:-77481313 None:intergenic
TGGAAGTATAAAATGGGTTT+GGG 0.290805 3_4:-77477880 None:intergenic
CTCATCTCTACCTTCTATTA+AGG 0.295970 3_4:+77481464 Msa0524040:CDS
CGCACTTGCTGCTTCTTCAA+TGG 0.299034 3_4:+77479366 Msa0524040:CDS
TAATCCCATTAATCCTTAAC+AGG 0.300223 3_4:+77481693 Msa0524040:exon
TTGGAAGTATAAAATGGGTT+TGG 0.308683 3_4:-77477881 None:intergenic
TTAACCTGTTAAGGATTAAT+GGG 0.317615 3_4:-77481697 None:intergenic
ACAGAAGTGGCGTGGGAATT+CGG 0.323001 3_4:+77478063 Msa0524040:CDS
TTCTTTGAAGGACAACGTTC+GGG 0.326700 3_4:+77478019 Msa0524040:CDS
TCCTTGTAATTAACCTGTTA+AGG 0.327414 3_4:-77481706 None:intergenic
CAGAAGTGGCGTGGGAATTC+GGG 0.333466 3_4:+77478064 Msa0524040:CDS
TATATTAATGCGCCATTTGT+TGG 0.343277 3_4:+77481645 Msa0524040:CDS
TTATCTTACATGGTTGGTTA+TGG 0.346424 3_4:+77481408 Msa0524040:CDS
AAAGCGTTTCTGAGTTCATT+AGG 0.346536 3_4:-77478229 None:intergenic
ATATTAATGCGCCATTTGTT+GGG 0.347405 3_4:+77481646 Msa0524040:CDS
CCCCTTGGGTTTATCTTACA+TGG 0.349502 3_4:+77481398 Msa0524040:CDS
CCTAACCCAAATGTTCTTGT+AGG 0.353533 3_4:+77481543 Msa0524040:CDS
GAGTAATGTCTCAGAATAAC+CGG 0.358072 3_4:-77479407 None:intergenic
CCATCAAAATCACAATAATA+AGG 0.363676 3_4:-77479514 None:intergenic
ATAGCTCCTACAAGAACATT+TGG 0.366293 3_4:-77481549 None:intergenic
TCTCCGGCGACATCGGAAGC+TGG 0.368714 3_4:-77479334 None:intergenic
TGACGTGCGAGATAAGTAAT+TGG 0.370872 3_4:-77481286 None:intergenic
TCGTGGAGTGTGATTGAGTT+TGG 0.383558 3_4:+77478193 Msa0524040:CDS
AACAAACAACAACGATTTGC+TGG 0.392456 3_4:-77477915 None:intergenic
TTGTACAGGACGAATTGTTA+TGG 0.396581 3_4:+77480659 Msa0524040:intron
CCTACAAGAACATTTGGGTT+AGG 0.401102 3_4:-77481543 None:intergenic
TATGGGGAGCCGCATGGTTA+AGG 0.403036 3_4:+77480677 Msa0524040:CDS
GTTCTTTGAAGGACAACGTT+CGG 0.406507 3_4:+77478018 Msa0524040:CDS
CAGAAGACATGGACACAAAC+AGG 0.408396 3_4:+77479284 Msa0524040:CDS
GATGGGATTTGGAGGGAAGT+AGG 0.412617 3_4:-77477657 None:intergenic
GTGGTTGTTTGTTAATTGTC+TGG 0.416256 3_4:+77482009 Msa0524040:three_prime_UTR
TGTACAGGACGAATTGTTAT+GGG 0.417837 3_4:+77480660 Msa0524040:intron
TCCCACGCCACTTCTGTCTC+TGG 0.419554 3_4:-77478057 None:intergenic
TGTTAGTGCACAAACACTTC+GGG 0.420044 3_4:+77481335 Msa0524040:CDS
AAGTGCGGCGGCTGTTTCTC+CGG 0.426242 3_4:-77479350 None:intergenic
ATAGTAAAAGGTTTATATAC+AGG 0.427214 3_4:+77481777 Msa0524040:three_prime_UTR
ACTTACAACACTGATCTTAC+CGG 0.429293 3_4:+77478103 Msa0524040:CDS
GGGAATTCGGGTTTGAGTGA+TGG 0.430739 3_4:+77478076 Msa0524040:CDS
GTCTGTCTCTTAAATAAACT+TGG 0.431349 3_4:+77477728 Msa0524040:five_prime_UTR
CACTTCTGTCTCTGGTCCTC+TGG 0.435129 3_4:-77478049 None:intergenic
TATAAAATGGGTTTGGGGTA+AGG 0.435558 3_4:-77477874 None:intergenic
CTACTACTGGTGATGCTGAT+TGG 0.435595 3_4:+77477938 Msa0524040:CDS
ACTTGCTTGTGTCTGTTGGC+TGG 0.436665 3_4:+77481845 Msa0524040:three_prime_UTR
GTTGTTGTTTGTTCTACTAC+TGG 0.438724 3_4:+77477925 Msa0524040:CDS
GGAATTCGGGTTTGAGTGAT+GGG 0.438904 3_4:+77478077 Msa0524040:CDS
GCGACATCGGAAGCTGGGTT+AGG 0.440796 3_4:-77479328 None:intergenic
TTGTTATAGGAAGTCCTAGA+AGG 0.447365 3_4:+77481090 Msa0524040:intron
GGCTGTTTCTCCGGCGACAT+CGG 0.450417 3_4:-77479341 None:intergenic
ATGTGATGAATGAAATTAAT+GGG 0.453632 3_4:-77477849 None:intergenic
TTGGGTTTATCTTACATGGT+TGG 0.457905 3_4:+77481402 Msa0524040:CDS
AATGTAATCAACTTGTCTCT+TGG 0.459625 3_4:-77481364 None:intergenic
CAGTGACAATGCTGATGTTA+AGG 0.460357 3_4:+77479480 Msa0524040:CDS
ATTACTCAGAAATGCTGTTA+AGG 0.461567 3_4:+77479423 Msa0524040:CDS
ACGCTTTGGTCGCAATTCGT+TGG 0.466420 3_4:+77478245 Msa0524040:CDS
GAGAGAGAGATGGGATTTGG+AGG 0.469253 3_4:-77477665 None:intergenic
GGAGCTATTGTGGGAGGACC+TGG 0.473308 3_4:+77481564 Msa0524040:CDS
ATGGTTAAGGAGGGCTACTC+AGG 0.477602 3_4:+77480690 Msa0524040:CDS
TAGCTCCTACAAGAACATTT+GGG 0.479600 3_4:-77481548 None:intergenic
TTATACTTCCAAAATGGCAT+TGG 0.482936 3_4:+77477892 Msa0524040:exon
TAATGAACTCAGAAACGCTT+TGG 0.483275 3_4:+77478231 Msa0524040:CDS
AAGGCAATCATGTTCTTTGA+AGG 0.484150 3_4:+77478007 Msa0524040:CDS
GAAGACAACATTAATGAGTT+CGG 0.484613 3_4:+77480763 Msa0524040:CDS
TGAGGATGGTCCTTAATAGA+AGG 0.486620 3_4:-77481474 None:intergenic
TTCAATGGCATTCCGATCAT+CGG 0.487461 3_4:+77479381 Msa0524040:CDS
AGAGACTTGCTTGTGTCTGT+TGG 0.487501 3_4:+77481841 Msa0524040:three_prime_UTR
CAACAGTTGTGGTCTGAGGT+TGG 0.488075 3_4:-77479253 None:intergenic
CTCCGGCGACATCGGAAGCT+GGG 0.490926 3_4:-77479333 None:intergenic
TGAATGAAATTAATGGGTTG+TGG 0.494144 3_4:-77477843 None:intergenic
CCGGTGATAACATCAAATTT+GGG 0.494860 3_4:+77478140 Msa0524040:CDS
ACAACATTAATGAGTTCGGT+TGG 0.496036 3_4:+77480767 Msa0524040:CDS
TGTTGTAAGTTGCTTCCACC+TGG 0.503502 3_4:-77481228 None:intergenic
AACCTCAGACCACAACTGTT+GGG 0.503584 3_4:+77479255 Msa0524040:CDS
CTCCCAACAGTTGTGGTCTG+AGG 0.506354 3_4:-77479257 None:intergenic
TGTTCTTGTAGGAGCTATTG+TGG 0.507021 3_4:+77481554 Msa0524040:CDS
TCCTTAACAGGTTAATTACA+AGG 0.507651 3_4:+77481705 Msa0524040:three_prime_UTR
TAATGGGTTGTGGGTAAAGT+GGG 0.510030 3_4:-77477833 None:intergenic
CCCAAATTTGATGTTATCAC+CGG 0.511014 3_4:-77478140 None:intergenic
TATGCTAAAACCCCAACAAA+TGG 0.511723 3_4:-77481657 None:intergenic
CAACCTCAGACCACAACTGT+TGG 0.514008 3_4:+77479254 Msa0524040:CDS
GAATGAAATTAATGGGTTGT+GGG 0.515419 3_4:-77477842 None:intergenic
TCCTCAACAGATTGCATGCA+AGG 0.516979 3_4:+77481491 Msa0524040:CDS
CCTCAACGTTCTTGTCTCCA+AGG 0.518942 3_4:+77480807 Msa0524040:CDS
TTAATGGGTTGTGGGTAAAG+TGG 0.519196 3_4:-77477834 None:intergenic
AATGTGATGAATGAAATTAA+TGG 0.521183 3_4:-77477850 None:intergenic
ATGATGTTTATGTGGATGAC+AGG 0.521412 3_4:+77481592 Msa0524040:CDS
CAACAGATTGCATGCAAGGA+AGG 0.522778 3_4:+77481495 Msa0524040:CDS
CAACATTAATGAGTTCGGTT+GGG 0.522809 3_4:+77480768 Msa0524040:CDS
CTGGCCTCTCCCAACAGTTG+TGG 0.526446 3_4:-77479264 None:intergenic
ATGTTAGTGCACAAACACTT+CGG 0.530340 3_4:+77481334 Msa0524040:CDS
AAATGGCGCATTAATATATG+TGG 0.534377 3_4:-77481640 None:intergenic
CTAAACTACATTCAAAGCAA+TGG 0.537231 3_4:+77480724 Msa0524040:CDS
TCCTTGCATGCAATCTGTTG+AGG 0.537233 3_4:-77481492 None:intergenic
GGGGAGCCGCATGGTTAAGG+AGG 0.537973 3_4:+77480680 Msa0524040:CDS
CATCAAATTTGGGTTTCCGA+TGG 0.547688 3_4:+77478150 Msa0524040:CDS
AGAGAGAGATGGGATTTGGA+GGG 0.549561 3_4:-77477664 None:intergenic
GACCAGAGACAGAAGTGGCG+TGG 0.550720 3_4:+77478055 Msa0524040:CDS
AATAACCGGGATCCGATGAT+CGG 0.551697 3_4:-77479393 None:intergenic
ATTTGGAGGGAAGTAGGAGT+AGG 0.552853 3_4:-77477651 None:intergenic
AAAAGGTTTATATACAGGAA+AGG 0.553561 3_4:+77481782 Msa0524040:three_prime_UTR
GTTCTTGTAGGAGCTATTGT+GGG 0.555313 3_4:+77481555 Msa0524040:CDS
CCGACAGATAAACGAGGGAG+AGG 0.556209 3_4:-77477610 None:intergenic
TGTCTGTTGGCTGGATACAT+AGG 0.556277 3_4:+77481854 Msa0524040:three_prime_UTR
TCAATATGCAGACAGTTACA+GGG 0.557642 3_4:+77479450 Msa0524040:CDS
TCACACATCGAGTACACTCC+TGG 0.560468 3_4:+77481189 Msa0524040:CDS
TTGGGAGAGGCCAGAAGACA+TGG 0.561765 3_4:+77479273 Msa0524040:CDS
GGTTGGGACAACAAGCATGC+TGG 0.562101 3_4:+77480784 Msa0524040:CDS
ATGAGATGGTGTGGTGTCAC+GGG 0.564685 3_4:-77477765 None:intergenic
ATTGTTGTCGTAAACGCCAT+CGG 0.566271 3_4:-77478166 None:intergenic
CTAACGCATTAGAGATGAGA+TGG 0.567462 3_4:-77477779 None:intergenic
ACATAAACATCATCTTCTCC+AGG 0.567710 3_4:-77481582 None:intergenic
TATTAATGCGCCATTTGTTG+GGG 0.570106 3_4:+77481647 Msa0524040:CDS
ACCAGAGACAGAAGTGGCGT+GGG 0.571423 3_4:+77478056 Msa0524040:CDS
CTACTGGTGATGCTGATTGG+AGG 0.572389 3_4:+77477941 Msa0524040:CDS
ATTCGGGTTTGAGTGATGGG+TGG 0.574191 3_4:+77478080 Msa0524040:CDS
CAAAGCAATGGTAAAACACT+CGG 0.575426 3_4:+77480736 Msa0524040:CDS
ACCGGCGGTTACTACGACGC+CGG 0.576662 3_4:+77478121 Msa0524040:CDS
GGAAGTATAAAATGGGTTTG+GGG 0.578043 3_4:-77477879 None:intergenic
AACCCAGCTTCCGATGTCGC+CGG 0.578286 3_4:+77479331 Msa0524040:CDS
GGCGCATTAATATATGTGGT+TGG 0.580585 3_4:-77481636 None:intergenic
CCTCTCCCTCGTTTATCTGT+CGG 0.582430 3_4:+77477610 Msa0524040:five_prime_UTR
CTTGTAGGAGCTATTGTGGG+AGG 0.586975 3_4:+77481558 Msa0524040:CDS
TGGAGAAGATGATGTTTATG+TGG 0.587154 3_4:+77481584 Msa0524040:CDS
CATTGAAGAAGCAGCAAGTG+CGG 0.587315 3_4:-77479365 None:intergenic
GCATTCCGATCATCGGATCC+CGG 0.593312 3_4:+77479388 Msa0524040:CDS
AATTGTTATGGGGAGCCGCA+TGG 0.602591 3_4:+77480671 Msa0524040:CDS
TCATCTTAAGAAAATCAAGA+AGG 0.603437 3_4:+77481817 Msa0524040:three_prime_UTR
GCATAGGAAGCTCTCTGCTG+AGG 0.604029 3_4:-77481142 None:intergenic
TGCATGCAATCTGTTGAGGA+TGG 0.606925 3_4:-77481488 None:intergenic
GGTCTGTATATGAGTCCACC+AGG 0.612971 3_4:-77481207 None:intergenic
GATGAGATGGTGTGGTGTCA+CGG 0.625483 3_4:-77477766 None:intergenic
TTTCAGGTAGTAGTGTGCAT+AGG 0.626912 3_4:-77481158 None:intergenic
TGAAGAAGCAGCAAGTGCGG+CGG 0.632124 3_4:-77479362 None:intergenic
ATTTAACAAGAATAGAGTGA+GGG 0.633690 3_4:+77481979 Msa0524040:three_prime_UTR
GCGTTTCTGAGTTCATTAGG+AGG 0.634386 3_4:-77478226 None:intergenic
AACCATGTAAGATAAACCCA+AGG 0.635575 3_4:-77481400 None:intergenic
AATTGGCGTAGACTAACTCA+AGG 0.637923 3_4:-77481269 None:intergenic
CAGACCACAACTGTTGGGAG+AGG 0.640454 3_4:+77479260 Msa0524040:CDS
CAGAGGACCAGAGACAGAAG+TGG 0.641335 3_4:+77478050 Msa0524040:CDS
ACCATGTAAGATAAACCCAA+GGG 0.641726 3_4:-77481399 None:intergenic
ACGTCACAAACCATCAATTG+TGG 0.642957 3_4:+77481303 Msa0524040:CDS
TACAACACTGATCTTACCGG+CGG 0.646779 3_4:+77478106 Msa0524040:CDS
TTACGACAACAATGTTGTCG+TGG 0.652135 3_4:+77478176 Msa0524040:CDS
GACAATGCTGATGTTAAGGA+TGG 0.656075 3_4:+77479484 Msa0524040:CDS
AATTTAACAAGAATAGAGTG+AGG 0.657793 3_4:+77481978 Msa0524040:three_prime_UTR
ACCGGCGTCGTAGTAACCGC+CGG 0.660182 3_4:-77478122 None:intergenic
ATAGAGTGAGGGTGTCATTG+TGG 0.661242 3_4:+77481990 Msa0524040:three_prime_UTR
AGTAATGTCTCAGAATAACC+GGG 0.665758 3_4:-77479406 None:intergenic
GTACAGGACGAATTGTTATG+GGG 0.670217 3_4:+77480661 Msa0524040:intron
TTATGCGGAGGCATTATCGA+AGG 0.671544 3_4:+77477988 Msa0524040:CDS
CACATCGAGTACACTCCTGG+TGG 0.672404 3_4:+77481192 Msa0524040:CDS
TCTTTGAAGGACAACGTTCG+GGG 0.677942 3_4:+77478020 Msa0524040:CDS
GGTGGACTCATATACAGACC+AGG 0.680214 3_4:+77481210 Msa0524040:CDS
GGGAGCCGCATGGTTAAGGA+GGG 0.683185 3_4:+77480681 Msa0524040:CDS
CAATATGCAGACAGTTACAG+GGG 0.695263 3_4:+77479451 Msa0524040:CDS
CCACGATGATGAATACGTTG+TGG 0.695422 3_4:-77481441 None:intergenic
TGTGAATGCACATGATTATG+CGG 0.701086 3_4:+77477973 Msa0524040:CDS
GGACTCATATACAGACCAGG+TGG 0.718917 3_4:+77481213 Msa0524040:CDS
AAGCGCCGACAGATAAACGA+GGG 0.724034 3_4:-77477615 None:intergenic
CCTTGGAGACAAGAACGTTG+AGG 0.724038 3_4:-77480807 None:intergenic
GCATTAGAGATGAGATGGTG+TGG 0.724238 3_4:-77477774 None:intergenic
CCACAACGTATTCATCATCG+TGG 0.724350 3_4:+77481441 Msa0524040:CDS
TGATGTTTATGTGGATGACA+GGG 0.726322 3_4:+77481593 Msa0524040:CDS
CCATGTAAGATAAACCCAAG+GGG 0.735452 3_4:-77481398 None:intergenic
AGTAGCCCTCCTTAACCATG+CGG 0.745611 3_4:-77480686 None:intergenic
GAATGCACATGATTATGCGG+AGG 0.747781 3_4:+77477976 Msa0524040:CDS
AAAGCGCCGACAGATAAACG+AGG 0.756166 3_4:-77477616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTCTTTTTTGATTAA+GGG - chr3_4:77478504-77478523 None:intergenic 10.0%
!! TTAATCAAAAAAGAAATTTA+CGG + chr3_4:77478504-77478523 Msa0524040:intron 10.0%
!! AATTTGATTGTATAAAAAAA+CGG + chr3_4:77478728-77478747 Msa0524040:intron 10.0%
!! ATTCTCATTAATTTAAAAAT+TGG - chr3_4:77479096-77479115 None:intergenic 10.0%
!! ATATTAGATATATCAAAAAA+TGG + chr3_4:77479145-77479164 Msa0524040:intron 10.0%
!!! TTCTAATAATAAATACTTTT+TGG + chr3_4:77479905-77479924 Msa0524040:intron 10.0%
!! ATTAGTTAATTAATTAAAAG+TGG + chr3_4:77480333-77480352 Msa0524040:intron 10.0%
!! AAATAAATAAATAAAGGAAG+AGG - chr3_4:77478439-77478458 None:intergenic 15.0%
!!! GTAAATTTCTTTTTTGATTA+AGG - chr3_4:77478505-77478524 None:intergenic 15.0%
!! TCTAAAAAGTAAAATACAAA+TGG - chr3_4:77478663-77478682 None:intergenic 15.0%
!! TCATTAATTTAAAAATTGGA+TGG - chr3_4:77479092-77479111 None:intergenic 15.0%
!! TGTCATGTAATTTAATAATT+AGG - chr3_4:77479205-77479224 None:intergenic 15.0%
!!! GAATTTAGAATTATAAAAAC+AGG + chr3_4:77479944-77479963 Msa0524040:intron 15.0%
!! ATGTGATGAATGAAATTAAT+GGG - chr3_4:77477852-77477871 None:intergenic 20.0%
!! AATGTGATGAATGAAATTAA+TGG - chr3_4:77477853-77477872 None:intergenic 20.0%
!!! CCATTTCAATAAATTGATTT+AGG - chr3_4:77478534-77478553 None:intergenic 20.0%
!! CCTAAATCAATTTATTGAAA+TGG + chr3_4:77478531-77478550 Msa0524040:intron 20.0%
!! CAAAAAAAAAAAACTGAAAG+CGG - chr3_4:77478612-77478631 None:intergenic 20.0%
!! TTGTTCACATTTAGAAATAT+AGG + chr3_4:77478629-77478648 Msa0524040:intron 20.0%
!! AAAAGTAAAATACAAATGGA+AGG - chr3_4:77478659-77478678 None:intergenic 20.0%
!!! TCAAAATCATCATTTTTCTT+AGG - chr3_4:77478796-77478815 None:intergenic 20.0%
!!! ATTGCATTTTTCCTTTTTAT+AGG + chr3_4:77479587-77479606 Msa0524040:intron 20.0%
!! AAAATTCAAAACGATAACAT+CGG - chr3_4:77479616-77479635 None:intergenic 20.0%
!!! ACATTGATAATGATAGTATA+TGG + chr3_4:77479647-77479666 Msa0524040:intron 20.0%
!! TGTATTCATTTCATATCATA+TGG + chr3_4:77479834-77479853 Msa0524040:intron 20.0%
!! GTATTCATTTCATATCATAT+GGG + chr3_4:77479835-77479854 Msa0524040:intron 20.0%
!! TATTAGAAATTGAGTGTAAA+AGG - chr3_4:77479893-77479912 None:intergenic 20.0%
!! TAAGGTTTGAAAAATATAAG+CGG + chr3_4:77480019-77480038 Msa0524040:intron 20.0%
!! TAAATTGAATAGTGCATATT+TGG - chr3_4:77480169-77480188 None:intergenic 20.0%
!! AAATTTGAATTGAATAGAGA+TGG - chr3_4:77480835-77480854 None:intergenic 20.0%
!!! AGTAAATGAATTGTTGTTAT+AGG + chr3_4:77481077-77481096 Msa0524040:intron 20.0%
!! ATAGTAAAAGGTTTATATAC+AGG + chr3_4:77481777-77481796 Msa0524040:three_prime_UTR 20.0%
!!! CCATTTTGGAAGTATAAAAT+GGG - chr3_4:77477889-77477908 None:intergenic 25.0%
! AAATAAATAAAGGAAGAGGA+AGG - chr3_4:77478435-77478454 None:intergenic 25.0%
! GATCGTAAATGTAAATAAAC+TGG - chr3_4:77478590-77478609 None:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG + chr3_4:77478685-77478704 Msa0524040:intron 25.0%
! TTGATTGTATAAAAAAACGG+AGG + chr3_4:77478731-77478750 Msa0524040:intron 25.0%
! TGATTGTATAAAAAAACGGA+GGG + chr3_4:77478732-77478751 Msa0524040:intron 25.0%
! GTAGTGATGACAAAAATAAA+GGG - chr3_4:77478824-77478843 None:intergenic 25.0%
! TGTAGTGATGACAAAAATAA+AGG - chr3_4:77478825-77478844 None:intergenic 25.0%
!!! TATTTTTGTCATCACTACAA+AGG + chr3_4:77478826-77478845 Msa0524040:intron 25.0%
! GTATACAGTTATAATCGAAA+CGG - chr3_4:77479036-77479055 None:intergenic 25.0%
!!! AAATGGTTGATGACAAAATT+TGG + chr3_4:77479162-77479181 Msa0524040:intron 25.0%
! CCATCAAAATCACAATAATA+AGG - chr3_4:77479517-77479536 None:intergenic 25.0%
!! CCTTATTATTGTGATTTTGA+TGG + chr3_4:77479514-77479533 Msa0524040:CDS 25.0%
! CAATCAACATCGAATTATAT+AGG + chr3_4:77480464-77480483 Msa0524040:intron 25.0%
! TTATTACTAGTACTATGTGA+AGG + chr3_4:77480526-77480545 Msa0524040:intron 25.0%
! TATTACTAGTACTATGTGAA+GGG + chr3_4:77480527-77480546 Msa0524040:intron 25.0%
!! CTATTTGCTACACTATTAAT+TGG + chr3_4:77480621-77480640 Msa0524040:intron 25.0%
!!! AGACAAGTTGATTACATTTT+AGG + chr3_4:77481369-77481388 Msa0524040:CDS 25.0%
! TTAACCTGTTAAGGATTAAT+GGG - chr3_4:77481700-77481719 None:intergenic 25.0%
! ATTAACCTGTTAAGGATTAA+TGG - chr3_4:77481701-77481720 None:intergenic 25.0%
!! CTTCTTTTGTAGATAGTAAA+AGG + chr3_4:77481765-77481784 Msa0524040:three_prime_UTR 25.0%
! AAAAGGTTTATATACAGGAA+AGG + chr3_4:77481782-77481801 Msa0524040:three_prime_UTR 25.0%
! TCATCTTAAGAAAATCAAGA+AGG + chr3_4:77481817-77481836 Msa0524040:three_prime_UTR 25.0%
! AATTTAACAAGAATAGAGTG+AGG + chr3_4:77481978-77481997 Msa0524040:three_prime_UTR 25.0%
! ATTTAACAAGAATAGAGTGA+GGG + chr3_4:77481979-77481998 Msa0524040:three_prime_UTR 25.0%
! CTAACTTCTTCTTAACTTAT+TGG + chr3_4:77482072-77482091 Msa0524040:three_prime_UTR 25.0%
GTCTGTCTCTTAAATAAACT+TGG + chr3_4:77477728-77477747 Msa0524040:five_prime_UTR 30.0%
!! GAATGAAATTAATGGGTTGT+GGG - chr3_4:77477845-77477864 None:intergenic 30.0%
!! TGAATGAAATTAATGGGTTG+TGG - chr3_4:77477846-77477865 None:intergenic 30.0%
! TGGAAGTATAAAATGGGTTT+GGG - chr3_4:77477883-77477902 None:intergenic 30.0%
! TTGGAAGTATAAAATGGGTT+TGG - chr3_4:77477884-77477903 None:intergenic 30.0%
! CCCATTTTATACTTCCAAAA+TGG + chr3_4:77477886-77477905 Msa0524040:exon 30.0%
!! GCCATTTTGGAAGTATAAAA+TGG - chr3_4:77477890-77477909 None:intergenic 30.0%
TTATACTTCCAAAATGGCAT+TGG + chr3_4:77477892-77477911 Msa0524040:exon 30.0%
ATTGTACCTGAACAAAAATG+CGG - chr3_4:77478309-77478328 None:intergenic 30.0%
ACAATTTACTACTGAATCGT+TGG + chr3_4:77478324-77478343 Msa0524040:intron 30.0%
CAATTTACTACTGAATCGTT+GGG + chr3_4:77478325-77478344 Msa0524040:intron 30.0%
!! AAATTTTCCGTGTCATTATG+TGG + chr3_4:77478908-77478927 Msa0524040:intron 30.0%
AGTTATAATCGAAACGGAAA+TGG - chr3_4:77479030-77479049 None:intergenic 30.0%
ACATTGTACATGCTACTATT+AGG + chr3_4:77479222-77479241 Msa0524040:intron 30.0%
ATTACTCAGAAATGCTGTTA+AGG + chr3_4:77479423-77479442 Msa0524040:CDS 30.0%
AACTATACTACTTACTAACC+TGG - chr3_4:77479543-77479562 None:intergenic 30.0%
AACATCGGATACCTATAAAA+AGG - chr3_4:77479601-77479620 None:intergenic 30.0%
! ATTTCATATCATATGGGCTA+TGG + chr3_4:77479841-77479860 Msa0524040:intron 30.0%
TAGAAATTGAGTGTAAAAGG+TGG - chr3_4:77479890-77479909 None:intergenic 30.0%
! ACAAGTGATTTTGCGAAATA+AGG + chr3_4:77480001-77480020 Msa0524040:intron 30.0%
GTTTGAAAAATATAAGCGGT+GGG + chr3_4:77480023-77480042 Msa0524040:intron 30.0%
!!! TTTGGAATTTTTTGCCAGTT+AGG + chr3_4:77480046-77480065 Msa0524040:intron 30.0%
! AATTGCATCTCGAGAATTTT+TGG + chr3_4:77480410-77480429 Msa0524040:intron 30.0%
ATTACTAGTACTATGTGAAG+GGG + chr3_4:77480528-77480547 Msa0524040:intron 30.0%
TGCTACACTATTAATTGGTT+TGG + chr3_4:77480626-77480645 Msa0524040:intron 30.0%
TTGGATACATTACATTGTAC+AGG + chr3_4:77480645-77480664 Msa0524040:intron 30.0%
! CATTGCTTTGAATGTAGTTT+AGG - chr3_4:77480726-77480745 None:intergenic 30.0%
CTAAACTACATTCAAAGCAA+TGG + chr3_4:77480724-77480743 Msa0524040:CDS 30.0%
GAAGACAACATTAATGAGTT+CGG + chr3_4:77480763-77480782 Msa0524040:CDS 30.0%
ATAAACATTGCCACAATTGA+TGG - chr3_4:77481316-77481335 None:intergenic 30.0%
AATGTAATCAACTTGTCTCT+TGG - chr3_4:77481367-77481386 None:intergenic 30.0%
! TTATCTTACATGGTTGGTTA+TGG + chr3_4:77481408-77481427 Msa0524040:CDS 30.0%
AAATGGCGCATTAATATATG+TGG - chr3_4:77481643-77481662 None:intergenic 30.0%
TATATTAATGCGCCATTTGT+TGG + chr3_4:77481645-77481664 Msa0524040:CDS 30.0%
ATATTAATGCGCCATTTGTT+GGG + chr3_4:77481646-77481665 Msa0524040:CDS 30.0%
TAATCCCATTAATCCTTAAC+AGG + chr3_4:77481693-77481712 Msa0524040:exon 30.0%
TCCTTAACAGGTTAATTACA+AGG + chr3_4:77481705-77481724 Msa0524040:three_prime_UTR 30.0%
TCCTTGTAATTAACCTGTTA+AGG - chr3_4:77481709-77481728 None:intergenic 30.0%
! ATATGTGACTTTTCCATTGA+AGG + chr3_4:77481905-77481924 Msa0524040:three_prime_UTR 30.0%
! TATGTGACTTTTCCATTGAA+GGG + chr3_4:77481906-77481925 Msa0524040:three_prime_UTR 30.0%
AATCAAAACAAAAAGCTTCG+TGG - chr3_4:77482042-77482061 None:intergenic 30.0%
AAAAAGAGAGAGAGAGAGAT+GGG - chr3_4:77477677-77477696 None:intergenic 35.0%
AAAAAAGAGAGAGAGAGAGA+TGG - chr3_4:77477678-77477697 None:intergenic 35.0%
! TATAAAATGGGTTTGGGGTA+AGG - chr3_4:77477877-77477896 None:intergenic 35.0%
! GGAAGTATAAAATGGGTTTG+GGG - chr3_4:77477882-77477901 None:intergenic 35.0%
AACAAACAACAACGATTTGC+TGG - chr3_4:77477918-77477937 None:intergenic 35.0%
!! GTTGTTGTTTGTTCTACTAC+TGG + chr3_4:77477925-77477944 Msa0524040:CDS 35.0%
TGTGAATGCACATGATTATG+CGG + chr3_4:77477973-77477992 Msa0524040:CDS 35.0%
AAGGCAATCATGTTCTTTGA+AGG + chr3_4:77478007-77478026 Msa0524040:CDS 35.0%
ACTTACAACACTGATCTTAC+CGG + chr3_4:77478103-77478122 Msa0524040:CDS 35.0%
CCCAAATTTGATGTTATCAC+CGG - chr3_4:77478143-77478162 None:intergenic 35.0%
CCGGTGATAACATCAAATTT+GGG + chr3_4:77478140-77478159 Msa0524040:CDS 35.0%
! AAAGCGTTTCTGAGTTCATT+AGG - chr3_4:77478232-77478251 None:intergenic 35.0%
TAATGAACTCAGAAACGCTT+TGG + chr3_4:77478231-77478250 Msa0524040:CDS 35.0%
TTCTTAGGAACGACTAAACA+TGG - chr3_4:77478781-77478800 None:intergenic 35.0%
TTGAAGTCCGTGAATTTCAT+CGG + chr3_4:77478955-77478974 Msa0524040:intron 35.0%
TTGTACATGCTACTATTAGG+TGG + chr3_4:77479225-77479244 Msa0524040:intron 35.0%
TGTACATGCTACTATTAGGT+GGG + chr3_4:77479226-77479245 Msa0524040:intron 35.0%
AGTAATGTCTCAGAATAACC+GGG - chr3_4:77479409-77479428 None:intergenic 35.0%
GAGTAATGTCTCAGAATAAC+CGG - chr3_4:77479410-77479429 None:intergenic 35.0%
TTCAATATGCAGACAGTTAC+AGG + chr3_4:77479449-77479468 Msa0524040:CDS 35.0%
TCAATATGCAGACAGTTACA+GGG + chr3_4:77479450-77479469 Msa0524040:CDS 35.0%
!! TTGTGATTTTGATGGATACC+AGG + chr3_4:77479522-77479541 Msa0524040:CDS 35.0%
AAATCCGAAGCAAACTATTG+TGG + chr3_4:77479762-77479781 Msa0524040:intron 35.0%
!! TTTGCCACAATAGTTTGCTT+CGG - chr3_4:77479769-77479788 None:intergenic 35.0%
GGTTTGAAAAATATAAGCGG+TGG + chr3_4:77480022-77480041 Msa0524040:intron 35.0%
! AAAAATATAAGCGGTGGGTT+TGG + chr3_4:77480028-77480047 Msa0524040:intron 35.0%
ACAACAAAGCTTCTGCAAAA+CGG - chr3_4:77480105-77480124 None:intergenic 35.0%
TAACACTTCCATTATGTGTC+GGG - chr3_4:77480386-77480405 None:intergenic 35.0%
GTAACACTTCCATTATGTGT+CGG - chr3_4:77480387-77480406 None:intergenic 35.0%
AAGGGGTAATATTTGTCTGA+GGG + chr3_4:77480545-77480564 Msa0524040:intron 35.0%
TTGTACAGGACGAATTGTTA+TGG + chr3_4:77480659-77480678 Msa0524040:intron 35.0%
TGTACAGGACGAATTGTTAT+GGG + chr3_4:77480660-77480679 Msa0524040:intron 35.0%
CAAAGCAATGGTAAAACACT+CGG + chr3_4:77480736-77480755 Msa0524040:CDS 35.0%
ACAACATTAATGAGTTCGGT+TGG + chr3_4:77480767-77480786 Msa0524040:CDS 35.0%
CAACATTAATGAGTTCGGTT+GGG + chr3_4:77480768-77480787 Msa0524040:CDS 35.0%
ATTGAATAGAGATGGAACCT+TGG - chr3_4:77480827-77480846 None:intergenic 35.0%
TTGTTATAGGAAGTCCTAGA+AGG + chr3_4:77481090-77481109 Msa0524040:intron 35.0%
GAGATTCAACATTTCCTTCT+AGG - chr3_4:77481107-77481126 None:intergenic 35.0%
ATGTGTGAACTTGATGTTTC+AGG - chr3_4:77481177-77481196 None:intergenic 35.0%
ATGTTAGTGCACAAACACTT+CGG + chr3_4:77481334-77481353 Msa0524040:CDS 35.0%
!! ATTTTAGGTGATAACCCCTT+GGG + chr3_4:77481384-77481403 Msa0524040:CDS 35.0%
ACCATGTAAGATAAACCCAA+GGG - chr3_4:77481402-77481421 None:intergenic 35.0%
AACCATGTAAGATAAACCCA+AGG - chr3_4:77481403-77481422 None:intergenic 35.0%
TTGGGTTTATCTTACATGGT+TGG + chr3_4:77481402-77481421 Msa0524040:CDS 35.0%
CTCATCTCTACCTTCTATTA+AGG + chr3_4:77481464-77481483 Msa0524040:CDS 35.0%
TAGCTCCTACAAGAACATTT+GGG - chr3_4:77481551-77481570 None:intergenic 35.0%
ATAGCTCCTACAAGAACATT+TGG - chr3_4:77481552-77481571 None:intergenic 35.0%
ACATAAACATCATCTTCTCC+AGG - chr3_4:77481585-77481604 None:intergenic 35.0%
TGGAGAAGATGATGTTTATG+TGG + chr3_4:77481584-77481603 Msa0524040:CDS 35.0%
ATGATGTTTATGTGGATGAC+AGG + chr3_4:77481592-77481611 Msa0524040:CDS 35.0%
TGATGTTTATGTGGATGACA+GGG + chr3_4:77481593-77481612 Msa0524040:CDS 35.0%
! TATTAATGCGCCATTTGTTG+GGG + chr3_4:77481647-77481666 Msa0524040:CDS 35.0%
TATGCTAAAACCCCAACAAA+TGG - chr3_4:77481660-77481679 None:intergenic 35.0%
! GTGGTTGTTTGTTAATTGTC+TGG + chr3_4:77482009-77482028 Msa0524040:three_prime_UTR 35.0%
CTAACGCATTAGAGATGAGA+TGG - chr3_4:77477782-77477801 None:intergenic 40.0%
!! TAATGGGTTGTGGGTAAAGT+GGG - chr3_4:77477836-77477855 None:intergenic 40.0%
!! TTAATGGGTTGTGGGTAAAG+TGG - chr3_4:77477837-77477856 None:intergenic 40.0%
! GTTCTTTGAAGGACAACGTT+CGG + chr3_4:77478018-77478037 Msa0524040:CDS 40.0%
! TTCTTTGAAGGACAACGTTC+GGG + chr3_4:77478019-77478038 Msa0524040:CDS 40.0%
GCCGGTGATAACATCAAATT+TGG + chr3_4:77478139-77478158 Msa0524040:CDS 40.0%
! CATCAAATTTGGGTTTCCGA+TGG + chr3_4:77478150-77478169 Msa0524040:CDS 40.0%
ATTGTTGTCGTAAACGCCAT+CGG - chr3_4:77478169-77478188 None:intergenic 40.0%
TTACGACAACAATGTTGTCG+TGG + chr3_4:77478176-77478195 Msa0524040:CDS 40.0%
! GTCTAACCGCATTTTTGTTC+AGG + chr3_4:77478300-77478319 Msa0524040:CDS 40.0%
ATAAACTGGCACAGCTATCA+AGG - chr3_4:77478576-77478595 None:intergenic 40.0%
GATGAAATTCACGGACTTCA+AGG - chr3_4:77478956-77478975 None:intergenic 40.0%
TGCAAAGCCGATGAAATTCA+CGG - chr3_4:77478965-77478984 None:intergenic 40.0%
ATGAGTAACACTGCCATGTT+TGG - chr3_4:77479066-77479085 None:intergenic 40.0%
TTCAATGGCATTCCGATCAT+CGG + chr3_4:77479381-77479400 Msa0524040:CDS 40.0%
CAATATGCAGACAGTTACAG+GGG + chr3_4:77479451-77479470 Msa0524040:CDS 40.0%
CAGTGACAATGCTGATGTTA+AGG + chr3_4:77479480-77479499 Msa0524040:CDS 40.0%
GACAATGCTGATGTTAAGGA+TGG + chr3_4:77479484-77479503 Msa0524040:CDS 40.0%
! TAGAGTGTTTGATCACGTGA+AGG - chr3_4:77479690-77479709 None:intergenic 40.0%
! ATATCATATGGGCTATGGCA+TGG + chr3_4:77479846-77479865 Msa0524040:intron 40.0%
! TATCATATGGGCTATGGCAT+GGG + chr3_4:77479847-77479866 Msa0524040:intron 40.0%
TGAGTGTAAAAGGTGGATGT+GGG - chr3_4:77479883-77479902 None:intergenic 40.0%
TTGAGTGTAAAAGGTGGATG+TGG - chr3_4:77479884-77479903 None:intergenic 40.0%
! TTTTGCCAGTTAGGACATGT+CGG + chr3_4:77480055-77480074 Msa0524040:intron 40.0%
GAAGGGGTAATATTTGTCTG+AGG + chr3_4:77480544-77480563 Msa0524040:intron 40.0%
AGGGCAATTCGTGTATTTAG+TGG + chr3_4:77480564-77480583 Msa0524040:intron 40.0%
GTACAGGACGAATTGTTATG+GGG + chr3_4:77480661-77480680 Msa0524040:intron 40.0%
! TTTCAGGTAGTAGTGTGCAT+AGG - chr3_4:77481161-77481180 None:intergenic 40.0%
AATTGGCGTAGACTAACTCA+AGG - chr3_4:77481272-77481291 None:intergenic 40.0%
TGACGTGCGAGATAAGTAAT+TGG - chr3_4:77481289-77481308 None:intergenic 40.0%
ACGTCACAAACCATCAATTG+TGG + chr3_4:77481303-77481322 Msa0524040:CDS 40.0%
TGTTAGTGCACAAACACTTC+GGG + chr3_4:77481335-77481354 Msa0524040:CDS 40.0%
!! CATTTTAGGTGATAACCCCT+TGG + chr3_4:77481383-77481402 Msa0524040:CDS 40.0%
CCATGTAAGATAAACCCAAG+GGG - chr3_4:77481401-77481420 None:intergenic 40.0%
TGAGGATGGTCCTTAATAGA+AGG - chr3_4:77481477-77481496 None:intergenic 40.0%
! CCTACAAGAACATTTGGGTT+AGG - chr3_4:77481546-77481565 None:intergenic 40.0%
CCTAACCCAAATGTTCTTGT+AGG + chr3_4:77481543-77481562 Msa0524040:CDS 40.0%
TGTTCTTGTAGGAGCTATTG+TGG + chr3_4:77481554-77481573 Msa0524040:CDS 40.0%
GTTCTTGTAGGAGCTATTGT+GGG + chr3_4:77481555-77481574 Msa0524040:CDS 40.0%
GGCGCATTAATATATGTGGT+TGG - chr3_4:77481639-77481658 None:intergenic 40.0%
!! TCTCGTTTTTCACCCTTCAA+TGG - chr3_4:77481921-77481940 None:intergenic 40.0%
ATTTGGAGGGAAGTAGGAGT+AGG - chr3_4:77477654-77477673 None:intergenic 45.0%
AGAGAGAGATGGGATTTGGA+GGG - chr3_4:77477667-77477686 None:intergenic 45.0%
AGAGAGAGAGAGATGGGATT+TGG - chr3_4:77477671-77477690 None:intergenic 45.0%
GCATTAGAGATGAGATGGTG+TGG - chr3_4:77477777-77477796 None:intergenic 45.0%
!! TTTGCTGGCCAATGCCATTT+TGG - chr3_4:77477903-77477922 None:intergenic 45.0%
! CTACTACTGGTGATGCTGAT+TGG + chr3_4:77477938-77477957 Msa0524040:CDS 45.0%
GAATGCACATGATTATGCGG+AGG + chr3_4:77477976-77477995 Msa0524040:CDS 45.0%
!! TTATGCGGAGGCATTATCGA+AGG + chr3_4:77477988-77478007 Msa0524040:CDS 45.0%
! TCTTTGAAGGACAACGTTCG+GGG + chr3_4:77478020-77478039 Msa0524040:CDS 45.0%
! GGAATTCGGGTTTGAGTGAT+GGG + chr3_4:77478077-77478096 Msa0524040:CDS 45.0%
TACAACACTGATCTTACCGG+CGG + chr3_4:77478106-77478125 Msa0524040:CDS 45.0%
TCGTGGAGTGTGATTGAGTT+TGG + chr3_4:77478193-77478212 Msa0524040:CDS 45.0%
GCGTTTCTGAGTTCATTAGG+AGG - chr3_4:77478229-77478248 None:intergenic 45.0%
TTGACTCACTCACTCACTCA+CGG + chr3_4:77478348-77478367 Msa0524040:intron 45.0%
GAGTGAGTGAGAAAGAGAAG+TGG - chr3_4:77478395-77478414 None:intergenic 45.0%
TATCAAGGAAGAACGCACGA+TGG - chr3_4:77478561-77478580 None:intergenic 45.0%
! TTCCGTGTCATTATGTGGAC+TGG + chr3_4:77478913-77478932 Msa0524040:intron 45.0%
CTCCAGTCCACATAATGACA+CGG - chr3_4:77478918-77478937 None:intergenic 45.0%
!! TGTCATTATGTGGACTGGAG+TGG + chr3_4:77478918-77478937 Msa0524040:intron 45.0%
AACCTCAGACCACAACTGTT+GGG + chr3_4:77479255-77479274 Msa0524040:CDS 45.0%
CTGTTTGTGTCCATGTCTTC+TGG - chr3_4:77479286-77479305 None:intergenic 45.0%
CAGAAGACATGGACACAAAC+AGG + chr3_4:77479284-77479303 Msa0524040:CDS 45.0%
CATTGAAGAAGCAGCAAGTG+CGG - chr3_4:77479368-77479387 None:intergenic 45.0%
AATAACCGGGATCCGATGAT+CGG - chr3_4:77479396-77479415 None:intergenic 45.0%
TTACACCGACATGTCCTAAC+TGG - chr3_4:77480063-77480082 None:intergenic 45.0%
GTTAGGACATGTCGGTGTAA+TGG + chr3_4:77480063-77480082 Msa0524040:intron 45.0%
TGTTGTAAGTTGCTTCCACC+TGG - chr3_4:77481231-77481250 None:intergenic 45.0%
CCCCTTGGGTTTATCTTACA+TGG + chr3_4:77481398-77481417 Msa0524040:CDS 45.0%
CCACGATGATGAATACGTTG+TGG - chr3_4:77481444-77481463 None:intergenic 45.0%
CCACAACGTATTCATCATCG+TGG + chr3_4:77481441-77481460 Msa0524040:CDS 45.0%
TGCATGCAATCTGTTGAGGA+TGG - chr3_4:77481491-77481510 None:intergenic 45.0%
TCCTCAACAGATTGCATGCA+AGG + chr3_4:77481491-77481510 Msa0524040:CDS 45.0%
TCCTTGCATGCAATCTGTTG+AGG - chr3_4:77481495-77481514 None:intergenic 45.0%
CAACAGATTGCATGCAAGGA+AGG + chr3_4:77481495-77481514 Msa0524040:CDS 45.0%
! AGAGACTTGCTTGTGTCTGT+TGG + chr3_4:77481841-77481860 Msa0524040:three_prime_UTR 45.0%
! TGTCTGTTGGCTGGATACAT+AGG + chr3_4:77481854-77481873 Msa0524040:three_prime_UTR 45.0%
!! ATAGAGTGAGGGTGTCATTG+TGG + chr3_4:77481990-77482009 Msa0524040:three_prime_UTR 45.0%
!! TGTAATAAATAAATAAATAA+AGG - chr3_4:77478445-77478464 None:intergenic 5.0%
!!! TTTATTTATTTATTACATTT+TGG + chr3_4:77478448-77478467 Msa0524040:intron 5.0%
CCTCTCCCTCGTTTATCTGT+CGG + chr3_4:77477610-77477629 Msa0524040:five_prime_UTR 50.0%
!! AAGCGCCGACAGATAAACGA+GGG - chr3_4:77477618-77477637 None:intergenic 50.0%
!! AAAGCGCCGACAGATAAACG+AGG - chr3_4:77477619-77477638 None:intergenic 50.0%
GATGGGATTTGGAGGGAAGT+AGG - chr3_4:77477660-77477679 None:intergenic 50.0%
GAGAGAGAGATGGGATTTGG+AGG - chr3_4:77477668-77477687 None:intergenic 50.0%
!! ATGAGATGGTGTGGTGTCAC+GGG - chr3_4:77477768-77477787 None:intergenic 50.0%
! GATGAGATGGTGTGGTGTCA+CGG - chr3_4:77477769-77477788 None:intergenic 50.0%
! CTACTGGTGATGCTGATTGG+AGG + chr3_4:77477941-77477960 Msa0524040:CDS 50.0%
! ACGTTCGGGGTTTTTACCAG+AGG + chr3_4:77478033-77478052 Msa0524040:CDS 50.0%
ACAGAAGTGGCGTGGGAATT+CGG + chr3_4:77478063-77478082 Msa0524040:CDS 50.0%
! GGGAATTCGGGTTTGAGTGA+TGG + chr3_4:77478076-77478095 Msa0524040:CDS 50.0%
! ATTCGGGTTTGAGTGATGGG+TGG + chr3_4:77478080-77478099 Msa0524040:CDS 50.0%
ACGCTTTGGTCGCAATTCGT+TGG + chr3_4:77478245-77478264 Msa0524040:CDS 50.0%
AGGAAGAGGAAGGAGTGAGT+AGG - chr3_4:77478425-77478444 None:intergenic 50.0%
CGGACTTCAAGGATACGAAC+TGG - chr3_4:77478945-77478964 None:intergenic 50.0%
! CAACAGTTGTGGTCTGAGGT+TGG - chr3_4:77479256-77479275 None:intergenic 50.0%
CAACCTCAGACCACAACTGT+TGG + chr3_4:77479254-77479273 Msa0524040:CDS 50.0%
! CGCACTTGCTGCTTCTTCAA+TGG + chr3_4:77479366-77479385 Msa0524040:CDS 50.0%
CACGTGATCCCGACACATAA+TGG + chr3_4:77480375-77480394 Msa0524040:intron 50.0%
AATTGTTATGGGGAGCCGCA+TGG + chr3_4:77480671-77480690 Msa0524040:CDS 50.0%
AGTAGCCCTCCTTAACCATG+CGG - chr3_4:77480689-77480708 None:intergenic 50.0%
ATGGTTAAGGAGGGCTACTC+AGG + chr3_4:77480690-77480709 Msa0524040:CDS 50.0%
CCTTGGAGACAAGAACGTTG+AGG - chr3_4:77480810-77480829 None:intergenic 50.0%
CCTCAACGTTCTTGTCTCCA+AGG + chr3_4:77480807-77480826 Msa0524040:CDS 50.0%
AAAAAACAATTCGCCCCCCG+TGG + chr3_4:77480915-77480934 Msa0524040:intron 50.0%
AAAAACAATTCGCCCCCCGT+GGG + chr3_4:77480916-77480935 Msa0524040:intron 50.0%
GCTCTTAACCTTGTGGTCGT+GGG - chr3_4:77480949-77480968 None:intergenic 50.0%
GCTCTACCAACTGAGCTAGA+CGG + chr3_4:77480974-77480993 Msa0524040:intron 50.0%
CTCTACCAACTGAGCTAGAC+GGG + chr3_4:77480975-77480994 Msa0524040:intron 50.0%
TCACACATCGAGTACACTCC+TGG + chr3_4:77481189-77481208 Msa0524040:CDS 50.0%
GGTCTGTATATGAGTCCACC+AGG - chr3_4:77481210-77481229 None:intergenic 50.0%
! GGTGGACTCATATACAGACC+AGG + chr3_4:77481210-77481229 Msa0524040:CDS 50.0%
GGACTCATATACAGACCAGG+TGG + chr3_4:77481213-77481232 Msa0524040:CDS 50.0%
CTTGTAGGAGCTATTGTGGG+AGG + chr3_4:77481558-77481577 Msa0524040:CDS 50.0%
ACTTGCTTGTGTCTGTTGGC+TGG + chr3_4:77481845-77481864 Msa0524040:three_prime_UTR 50.0%
CCGACAGATAAACGAGGGAG+AGG - chr3_4:77477613-77477632 None:intergenic 55.0%
CACTTCTGTCTCTGGTCCTC+TGG - chr3_4:77478052-77478071 None:intergenic 55.0%
CAGAGGACCAGAGACAGAAG+TGG + chr3_4:77478050-77478069 Msa0524040:CDS 55.0%
ACCAGAGACAGAAGTGGCGT+GGG + chr3_4:77478056-77478075 Msa0524040:CDS 55.0%
CAGAAGTGGCGTGGGAATTC+GGG + chr3_4:77478064-77478083 Msa0524040:CDS 55.0%
CTCACTCACTCACTCACGGA+CGG + chr3_4:77478352-77478371 Msa0524040:intron 55.0%
GTATACCCACGCGCCAAACA+TGG + chr3_4:77479050-77479069 Msa0524040:intron 55.0%
CTCCCAACAGTTGTGGTCTG+AGG - chr3_4:77479260-77479279 None:intergenic 55.0%
CAGACCACAACTGTTGGGAG+AGG + chr3_4:77479260-77479279 Msa0524040:CDS 55.0%
TTGGGAGAGGCCAGAAGACA+TGG + chr3_4:77479273-77479292 Msa0524040:CDS 55.0%
TGAAGAAGCAGCAAGTGCGG+CGG - chr3_4:77479365-77479384 None:intergenic 55.0%
GCATTCCGATCATCGGATCC+CGG + chr3_4:77479388-77479407 Msa0524040:CDS 55.0%
TATGGGGAGCCGCATGGTTA+AGG + chr3_4:77480677-77480696 Msa0524040:CDS 55.0%
GGTTGGGACAACAAGCATGC+TGG + chr3_4:77480784-77480803 Msa0524040:CDS 55.0%
AAAACAATTCGCCCCCCGTG+GGG + chr3_4:77480917-77480936 Msa0524040:intron 55.0%
GGCTCTTAACCTTGTGGTCG+TGG - chr3_4:77480950-77480969 None:intergenic 55.0%
GCGCAAGGCTCTTAACCTTG+TGG - chr3_4:77480956-77480975 None:intergenic 55.0%
!! AGCTCAGTTGGTAGAGCGCA+AGG - chr3_4:77480971-77480990 None:intergenic 55.0%
! AACAGCCCGTCTAGCTCAGT+TGG - chr3_4:77480983-77481002 None:intergenic 55.0%
GCATAGGAAGCTCTCTGCTG+AGG - chr3_4:77481145-77481164 None:intergenic 55.0%
CACATCGAGTACACTCCTGG+TGG + chr3_4:77481192-77481211 Msa0524040:CDS 55.0%
GACCAGAGACAGAAGTGGCG+TGG + chr3_4:77478055-77478074 Msa0524040:CDS 60.0%
TCCCACGCCACTTCTGTCTC+TGG - chr3_4:77478060-77478079 None:intergenic 60.0%
CACTGCCATGTTTGGCGCGT+GGG - chr3_4:77479058-77479077 None:intergenic 60.0%
ACACTGCCATGTTTGGCGCG+TGG - chr3_4:77479059-77479078 None:intergenic 60.0%
CTGGCCTCTCCCAACAGTTG+TGG - chr3_4:77479267-77479286 None:intergenic 60.0%
GCGACATCGGAAGCTGGGTT+AGG - chr3_4:77479331-77479350 None:intergenic 60.0%
AACCCAGCTTCCGATGTCGC+CGG + chr3_4:77479331-77479350 Msa0524040:CDS 60.0%
!! GGCTGTTTCTCCGGCGACAT+CGG - chr3_4:77479344-77479363 None:intergenic 60.0%
!! AAGTGCGGCGGCTGTTTCTC+CGG - chr3_4:77479353-77479372 None:intergenic 60.0%
GGGAGCCGCATGGTTAAGGA+GGG + chr3_4:77480681-77480700 Msa0524040:CDS 60.0%
GGAGCTATTGTGGGAGGACC+TGG + chr3_4:77481564-77481583 Msa0524040:CDS 60.0%
ACCGGCGGTTACTACGACGC+CGG + chr3_4:77478121-77478140 Msa0524040:CDS 65.0%
ACCGGCGTCGTAGTAACCGC+CGG - chr3_4:77478125-77478144 None:intergenic 65.0%
CTCCGGCGACATCGGAAGCT+GGG - chr3_4:77479336-77479355 None:intergenic 65.0%
TCTCCGGCGACATCGGAAGC+TGG - chr3_4:77479337-77479356 None:intergenic 65.0%
GGGGAGCCGCATGGTTAAGG+AGG + chr3_4:77480680-77480699 Msa0524040:CDS 65.0%
GGCTCGAACCCACGACCACA+AGG + chr3_4:77480938-77480957 Msa0524040:intron 65.0%
TCGTGGGTTCGAGCCCCACG+GGG - chr3_4:77480933-77480952 None:intergenic 70.0%
GTCGTGGGTTCGAGCCCCAC+GGG - chr3_4:77480934-77480953 None:intergenic 70.0%
GGTCGTGGGTTCGAGCCCCA+CGG - chr3_4:77480935-77480954 None:intergenic 70.0%
GTGGGTTCGAGCCCCACGGG+GGG - chr3_4:77480931-77480950 None:intergenic 75.0%
CGTGGGTTCGAGCCCCACGG+GGG - chr3_4:77480932-77480951 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77477578 77482137 77477578 ID=Msa0524040;Name=Msa0524040
chr3_4 mRNA 77477578 77482137 77477578 ID=Msa0524040-mRNA-1;Parent=Msa0524040;Name=Msa0524040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=327|1|1|1|1|1|4|442|491
chr3_4 exon 77477578 77478321 77477578 ID=Msa0524040-mRNA-1:exon:22673;Parent=Msa0524040-mRNA-1
chr3_4 exon 77479244 77479543 77479244 ID=Msa0524040-mRNA-1:exon:22674;Parent=Msa0524040-mRNA-1
chr3_4 exon 77480667 77480828 77480667 ID=Msa0524040-mRNA-1:exon:22675;Parent=Msa0524040-mRNA-1
chr3_4 exon 77481099 77482137 77481099 ID=Msa0524040-mRNA-1:exon:22676;Parent=Msa0524040-mRNA-1
chr3_4 five_prime_UTR 77477578 77477904 77477578 ID=Msa0524040-mRNA-1:five_prime_utr;Parent=Msa0524040-mRNA-1
chr3_4 CDS 77477905 77478321 77477905 ID=Msa0524040-mRNA-1:cds;Parent=Msa0524040-mRNA-1
chr3_4 CDS 77479244 77479543 77479244 ID=Msa0524040-mRNA-1:cds;Parent=Msa0524040-mRNA-1
chr3_4 CDS 77480667 77480828 77480667 ID=Msa0524040-mRNA-1:cds;Parent=Msa0524040-mRNA-1
chr3_4 CDS 77481099 77481695 77481099 ID=Msa0524040-mRNA-1:cds;Parent=Msa0524040-mRNA-1
chr3_4 three_prime_UTR 77481696 77482137 77481696 ID=Msa0524040-mRNA-1:three_prime_utr;Parent=Msa0524040-mRNA-1
Gene Sequence

>Msa0524040

ATGGCATTGGCCAGCAAATCGTTGTTGTTTGTTCTACTACTGGTGATGCTGATTGGAGGAAGAAGAAGTGTGAATGCACATGATTATGCGGAGGCATTATCGAAGGCAATCATGTTCTTTGAAGGACAACGTTCGGGGTTTTTACCAGAGGACCAGAGACAGAAGTGGCGTGGGAATTCGGGTTTGAGTGATGGGTGGACTTACAACACTGATCTTACCGGCGGTTACTACGACGCCGGTGATAACATCAAATTTGGGTTTCCGATGGCGTTTACGACAACAATGTTGTCGTGGAGTGTGATTGAGTTTGGTGAAAACATGCCTCCTAATGAACTCAGAAACGCTTTGGTCGCAATTCGTTGGAGTACTGATTATTTGCTTAAGACTGTTTCTCAGTCTAACCGCATTTTTGTTCAGGTGGGTGAACCAACCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACAAACAGGAAAGTGTATGCTGTTGATGCACCTAACCCAGCTTCCGATGTCGCCGGAGAAACAGCCGCCGCACTTGCTGCTTCTTCAATGGCATTCCGATCATCGGATCCCGGTTATTCTGAGACATTACTCAGAAATGCTGTTAAGGCATTTCAATATGCAGACAGTTACAGGGGCGCATACAGTGACAATGCTGATGTTAAGGATGGTGTCTGTCCTTATTATTGTGATTTTGATGGATACCAGGACGAATTGTTATGGGGAGCCGCATGGTTAAGGAGGGCTACTCAGGATGAAAATTTCCTAAACTACATTCAAAGCAATGGTAAAACACTCGGTGCTGAAGACAACATTAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTTGTCTCCAAGGAAGTCCTAGAAGGAAATGTTGAATCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCCTATGCACACTACTACCTGAAACATCAAGTTCACACATCGAGTACACTCCTGGTGGACTCATATACAGACCAGGTGGAAGCAACTTACAACATGCAACTTCAATTGCTTTCCTTGAGTTAGTCTACGCCAATTACTTATCTCGCACGTCACAAACCATCAATTGTGGCAATGTTTATGTTAGTGCACAAACACTTCGGGAGCGTGCCAAGAGACAAGTTGATTACATTTTAGGTGATAACCCCTTGGGTTTATCTTACATGGTTGGTTATGGTAACAATTATCCACAACGTATTCATCATCGTGGCTCATCTCTACCTTCTATTAAGGACCATCCTCAACAGATTGCATGCAAGGAAGGTTCAATATACTTCAATTCAACAAATCCTAACCCAAATGTTCTTGTAGGAGCTATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTATAGAAAATCTGAGCCAACCACATATATTAATGCGCCATTTGTTGGGGTTTTAGCATATTTTGTTGCTAATTAA
Protein sequence

>Msa0524040

MALASKSLLFVLLLVMLIGGRRSVNAHDYAEALSKAIMFFEGQRSGFLPEDQRQKWRGNSGLSDGWTYNTDLTGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGENMPPNELRNALVAIRWSTDYLLKTVSQSNRIFVQVGEPTSDHNCWERPEDMDTNRKVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQYADSYRGAYSDNADVKDGVCPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGNVESLESYKTSAESFLCTLLPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRERAKRQVDYILGDNPLGLSYMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADYRKSEPTTYINAPFVGVLAYFVAN*