AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438610 MtrunA17_Chr3g0145261 97.149 491 10 2 1 491 1 487 0.0 984
Msa1438610 MtrunA17_Chr8g0391391 61.966 468 172 4 27 491 29 493 0.0 601
Msa1438610 MtrunA17_Chr1g0195271 59.091 462 186 2 27 488 38 496 0.0 563
Msa1438610 MtrunA17_Chr3g0119821 57.602 467 194 3 23 488 30 493 0.0 559
Msa1438610 MtrunA17_Chr3g0080171 57.082 466 191 5 28 491 25 483 0.0 530
Msa1438610 MtrunA17_Chr4g0018361 54.970 493 204 7 6 488 5 489 0.0 523
Msa1438610 MtrunA17_Chr4g0018301 52.891 467 212 4 22 488 39 497 4.03e-180 514
Msa1438610 MtrunA17_Chr8g0388051 50.427 468 221 6 26 486 26 489 7.54e-163 475
Msa1438610 MtrunA17_Chr5g0397201 51.188 463 212 6 27 486 39 490 1.59e-162 469
Msa1438610 MtrunA17_Chr3g0119371 47.035 489 245 7 9 489 24 506 9.68e-154 448
Msa1438610 MtrunA17_Chr5g0439311 42.742 496 268 8 3 489 9 497 1.08e-147 432
Msa1438610 MtrunA17_Chr1g0164201 47.228 487 241 10 9 489 6 482 1.17e-142 418
Msa1438610 MtrunA17_Chr4g0038131 46.681 467 237 6 28 486 28 490 1.15e-141 421
Msa1438610 MtrunA17_Chr3g0086311 44.672 488 250 7 1 486 8 477 3.60e-139 409
Msa1438610 MtrunA17_Chr3g0142501 42.827 474 250 10 27 489 56 519 1.09e-120 363
Msa1438610 MtrunA17_Chr5g0397181 44.444 405 211 6 89 490 1 394 4.93e-120 357
Msa1438610 MtrunA17_Chr8g0372031 42.283 473 252 8 29 490 64 526 4.90e-116 352
Msa1438610 MtrunA17_Chr3g0136381 42.895 380 203 5 9 386 10 377 1.28e-109 332
Msa1438610 MtrunA17_Chr5g0444721 36.216 555 277 12 5 486 12 562 2.00e-105 325
Msa1438610 MtrunA17_Chr4g0018341 50.530 283 131 4 207 488 2 276 3.69e-105 315
Msa1438610 MtrunA17_Chr2g0291461 39.096 509 264 16 10 485 91 586 4.42e-89 285
Msa1438610 MtrunA17_Chr3g0120661 38.193 487 258 17 28 485 116 588 3.07e-86 277
Msa1438610 MtrunA17_Chr3g0126111 35.306 507 290 16 7 485 84 580 2.65e-85 274
Msa1438610 MtrunA17_Chr4g0018351 59.016 183 74 1 28 210 30 211 9.07e-65 208
Msa1438610 MtrunA17_Chr7g0269571 52.096 167 69 1 333 488 43 209 7.27e-57 189
Msa1438610 MtrunA17_Chr4g0022271 54.167 144 60 2 333 475 20 158 1.32e-45 157
Msa1438610 MtrunA17_Chr1g0164181 45.509 167 89 2 321 486 164 329 5.16e-41 149
Msa1438610 MtrunA17_Chr1g0164181 52.632 152 71 1 71 221 4 155 1.61e-39 145
Msa1438610 MtrunA17_Chr4g0072811 37.342 158 93 3 331 485 8 162 8.22e-26 104
Msa1438610 MtrunA17_Chr3g0136371 48.936 94 46 2 386 478 1 93 3.73e-22 91.3
Msa1438610 MtrunA17_Chr7g0269561 45.238 84 32 1 239 322 25 94 2.77e-18 80.9
Msa1438610 MtrunA17_Chr5g0397171 70.455 44 13 0 27 70 40 83 4.43e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438610 AT4G39010.1 74.468 470 119 1 23 491 24 493 0.0 744
Msa1438610 AT1G70710.1 60.081 491 191 3 3 491 1 488 0.0 615
Msa1438610 AT4G39000.1 57.819 486 204 1 7 491 4 489 0.0 591
Msa1438610 AT1G23210.1 57.230 491 205 3 3 491 1 488 0.0 590
Msa1438610 AT4G38990.2 57.377 488 199 4 10 491 8 492 0.0 578
Msa1438610 AT4G39010.2 72.253 364 100 1 23 385 24 387 0.0 572
Msa1438610 AT4G02290.1 58.874 462 187 2 27 488 51 509 0.0 571
Msa1438610 AT1G02800.1 59.660 471 185 3 18 488 33 498 0.0 565
Msa1438610 AT1G22880.1 55.144 486 210 4 7 491 3 481 0.0 516
Msa1438610 AT1G71380.1 54.545 484 211 5 8 490 5 480 6.16e-180 513
Msa1438610 AT4G02290.2 57.250 400 168 2 89 488 1 397 9.25e-167 477
Msa1438610 AT4G09740.1 49.691 485 228 6 12 491 4 477 5.25e-159 460
Msa1438610 AT4G11050.2 48.632 475 233 6 23 490 21 491 8.98e-159 462
Msa1438610 AT4G11050.1 48.632 475 233 6 23 490 21 491 7.35e-158 462
Msa1438610 AT4G11050.3 48.632 475 233 6 23 490 21 491 1.02e-157 462
Msa1438610 AT4G23560.1 48.454 485 237 5 9 491 4 477 6.52e-157 454
Msa1438610 AT1G64390.1 48.832 471 230 6 23 486 20 486 2.05e-156 458
Msa1438610 AT1G22880.2 55.446 404 172 4 89 491 1 397 1.05e-151 438
Msa1438610 AT2G32990.1 44.266 497 258 7 6 486 9 502 5.43e-148 434
Msa1438610 AT2G44540.1 46.362 481 245 7 11 486 16 488 3.95e-139 410
Msa1438610 AT2G44570.1 47.433 487 240 9 6 486 13 489 6.51e-139 409
Msa1438610 AT2G44550.1 46.998 483 240 9 9 486 16 487 8.64e-139 409
Msa1438610 AT2G44560.1 46.362 481 245 7 11 486 16 488 1.58e-136 403
Msa1438610 AT3G43860.2 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa1438610 AT3G43860.1 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa1438610 AT4G38990.1 55.618 356 129 3 10 364 8 335 2.50e-134 392
Msa1438610 AT1G48930.1 47.109 467 236 6 27 486 29 491 2.57e-132 397
Msa1438610 AT1G75680.1 45.852 458 231 8 29 479 58 505 7.03e-128 382
Msa1438610 AT1G19940.2 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa1438610 AT1G19940.1 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa1438610 AT1G22880.3 54.878 328 140 4 7 333 3 323 1.00e-110 332
Msa1438610 AT2G44570.2 43.890 401 210 8 6 401 13 403 7.07e-94 291
Msa1438610 AT1G19940.3 42.005 369 201 7 25 386 45 407 6.54e-88 276
Msa1438610 AT5G49720.1 37.718 517 276 16 3 485 79 583 7.75e-83 268
Msa1438610 AT1G65610.1 35.391 486 274 14 28 486 116 588 6.47e-81 263
Msa1438610 AT4G24260.1 36.327 490 268 16 28 486 108 584 1.20e-69 234
Msa1438610 AT4G24260.3 34.872 390 214 15 28 386 108 488 7.01e-41 153
Msa1438610 AT4G24260.2 36.562 320 168 12 28 319 108 420 1.60e-39 149
Msa1438610 AT3G42153.1 42.708 96 47 3 240 331 16 107 7.13e-15 71.2

Find 173 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTTCTTCTTAACTTAT+TGG 0.124007 tig0028593:+13963 Msa1438610:three_prime_UTR
GCCGGTGATAACATCAAATT+TGG 0.145877 tig0028593:+9981 Msa1438610:CDS
GAGATTCAACATTTCCTTCT+AGG 0.166797 tig0028593:-12995 None:intergenic
ATTAACCTGTTAAGGATTAA+TGG 0.215794 tig0028593:-13589 None:intergenic
CTGTTTGTGTCCATGTCTTC+TGG 0.223582 tig0028593:-11171 None:intergenic
TTCAATATGCAGACAGTTAC+AGG 0.227377 tig0028593:+11337 Msa1438610:CDS
ATGTGTGAACTTGATGTTTC+AGG 0.237520 tig0028593:-13065 None:intergenic
TTTGCTGGCCAATGCCATTT+TGG 0.261265 tig0028593:-9742 None:intergenic
CATTGCTTTGAATGTAGTTT+AGG 0.285334 tig0028593:-12611 None:intergenic
ATAAACATTGCCACAATTGA+TGG 0.289598 tig0028593:-13204 None:intergenic
TGGAAGTATAAAATGGGTTT+GGG 0.290805 tig0028593:-9722 None:intergenic
CTCATCTCTACCTTCTATTA+AGG 0.295970 tig0028593:+13355 Msa1438610:CDS
TAATCCCATTAATCCTTAAC+AGG 0.300223 tig0028593:+13584 Msa1438610:exon
TTGGAAGTATAAAATGGGTT+TGG 0.308683 tig0028593:-9723 None:intergenic
TTAACCTGTTAAGGATTAAT+GGG 0.317615 tig0028593:-13588 None:intergenic
ACAGAAGTGGCGTGGGAATT+CGG 0.323001 tig0028593:+9905 Msa1438610:CDS
TTCTTTGAAGGACAACGTTC+GGG 0.326700 tig0028593:+9861 Msa1438610:CDS
TCCTTGTAATTAACCTGTTA+AGG 0.327414 tig0028593:-13597 None:intergenic
CAGAAGTGGCGTGGGAATTC+GGG 0.333466 tig0028593:+9906 Msa1438610:CDS
TATATTAATGCGCCATTTGT+TGG 0.343277 tig0028593:+13536 Msa1438610:CDS
TTATCTTACATGGTTGGTTA+TGG 0.346424 tig0028593:+13299 Msa1438610:CDS
AAAGCGTTTCTGAGTTCATT+AGG 0.346536 tig0028593:-10071 None:intergenic
ATATTAATGCGCCATTTGTT+GGG 0.347405 tig0028593:+13537 Msa1438610:CDS
CCCCTTGGGTTTATCTTACA+TGG 0.349502 tig0028593:+13289 Msa1438610:CDS
CCTAACCCAAATGTTCTTGT+AGG 0.353533 tig0028593:+13434 Msa1438610:CDS
GAGTAATGTCTCAGAATAAC+CGG 0.358072 tig0028593:-11295 None:intergenic
CCATCAAAATCACAATAATA+AGG 0.363676 tig0028593:-11402 None:intergenic
ATAGCTCCTACAAGAACATT+TGG 0.366293 tig0028593:-13440 None:intergenic
AACAAACAGCAACGATTTGC+TGG 0.367650 tig0028593:-9757 None:intergenic
TCTCCGGCGACATCGGAAGC+TGG 0.368714 tig0028593:-11222 None:intergenic
TGACGTGCGAGATAAGTAAT+TGG 0.370872 tig0028593:-13177 None:intergenic
TCGTGGAGTGTGATTGAGTT+TGG 0.383558 tig0028593:+10035 Msa1438610:CDS
TTGTACAGGACGAATTGTTA+TGG 0.396581 tig0028593:+12547 Msa1438610:intron
CCTACAAGAACATTTGGGTT+AGG 0.401102 tig0028593:-13434 None:intergenic
CGCACTTGCTGCTTCTTCGA+TGG 0.401999 tig0028593:+11254 Msa1438610:CDS
TATGGGGAGCCGCATGGTTA+AGG 0.403036 tig0028593:+12565 Msa1438610:CDS
GTTCTTTGAAGGACAACGTT+CGG 0.406507 tig0028593:+9860 Msa1438610:CDS
CAGAAGACATGGACACAAAC+AGG 0.408396 tig0028593:+11172 Msa1438610:CDS
GTGGTTGTTTGTTAATTGTC+TGG 0.416256 tig0028593:+13900 Msa1438610:three_prime_UTR
TGTACAGGACGAATTGTTAT+GGG 0.417837 tig0028593:+12548 Msa1438610:intron
TCCCACGCCACTTCTGTCTC+TGG 0.419554 tig0028593:-9899 None:intergenic
TGTTAGTGCACAAACACTTC+GGG 0.420044 tig0028593:+13226 Msa1438610:CDS
AAGTGCGGCGGCTGTTTCTC+CGG 0.426242 tig0028593:-11238 None:intergenic
ATAGTAAAAGGTTTATATAC+AGG 0.427214 tig0028593:+13668 Msa1438610:three_prime_UTR
ACTTACAACACTGATCTTAC+CGG 0.429293 tig0028593:+9945 Msa1438610:CDS
GGGAATTCGGGTTTGAGTGA+TGG 0.430739 tig0028593:+9918 Msa1438610:CDS
GTCTGTCTCTTAAATAAACT+TGG 0.431349 tig0028593:+9575 Msa1438610:five_prime_UTR
CACTTCTGTCTCTGGTCCTC+TGG 0.435129 tig0028593:-9891 None:intergenic
TGTTGTAAGTTGCTTCCTCC+TGG 0.435163 tig0028593:-13119 None:intergenic
TATAAAATGGGTTTGGGGTA+AGG 0.435558 tig0028593:-9716 None:intergenic
CTACTACTGGTGATGCTGAT+TGG 0.435595 tig0028593:+9780 Msa1438610:CDS
ACTTGCTTGTGTCTGTTGGC+TGG 0.436665 tig0028593:+13736 Msa1438610:three_prime_UTR
GGAATTCGGGTTTGAGTGAT+GGG 0.438904 tig0028593:+9919 Msa1438610:CDS
GCGACATCGGAAGCTGGGTT+AGG 0.440796 tig0028593:-11216 None:intergenic
TTGTTATAGGAAGTCCTAGA+AGG 0.447365 tig0028593:+12981 Msa1438610:intron
GGCTGTTTCTCCGGCGACAT+CGG 0.450417 tig0028593:-11229 None:intergenic
ATGTGATGAATGAAATTAAT+GGG 0.453632 tig0028593:-9691 None:intergenic
TTGGGTTTATCTTACATGGT+TGG 0.457905 tig0028593:+13293 Msa1438610:CDS
AATGTAATCAACTTGTCTCT+TGG 0.459625 tig0028593:-13255 None:intergenic
CAGTGACAATGCTGATGTTA+AGG 0.460357 tig0028593:+11368 Msa1438610:CDS
ATTACTCAGAAATGCTGTTA+AGG 0.461567 tig0028593:+11311 Msa1438610:CDS
ACGCTTTGGTCGCAATTCGT+TGG 0.466420 tig0028593:+10087 Msa1438610:CDS
GTTGCTGTTTGTTCTACTAC+TGG 0.467883 tig0028593:+9767 Msa1438610:CDS
GAGAGAGAGATGGGATTTGG+AGG 0.469253 tig0028593:-9512 None:intergenic
GGAGCTATTGTGGGAGGACC+TGG 0.473308 tig0028593:+13455 Msa1438610:CDS
ATGGTTAAGGAGGGCTACTC+AGG 0.477602 tig0028593:+12578 Msa1438610:CDS
ATTTGGAGGGAAGTAGTAGT+AGG 0.477831 tig0028593:-9498 None:intergenic
TAGCTCCTACAAGAACATTT+GGG 0.479600 tig0028593:-13439 None:intergenic
TTATACTTCCAAAATGGCAT+TGG 0.482936 tig0028593:+9734 Msa1438610:exon
TAATGAACTCAGAAACGCTT+TGG 0.483275 tig0028593:+10073 Msa1438610:CDS
AAGGCAATCATGTTCTTTGA+AGG 0.484150 tig0028593:+9849 Msa1438610:CDS
GAAGACAACATTAATGAGTT+CGG 0.484613 tig0028593:+12651 Msa1438610:CDS
TGAGGATGGTCCTTAATAGA+AGG 0.486620 tig0028593:-13365 None:intergenic
AGAGACTTGCTTGTGTCTGT+TGG 0.487501 tig0028593:+13732 Msa1438610:three_prime_UTR
CAACAGTTGTGGTCTGAGGT+TGG 0.488075 tig0028593:-11141 None:intergenic
CTCCGGCGACATCGGAAGCT+GGG 0.490926 tig0028593:-11221 None:intergenic
TGAATGAAATTAATGGGTTG+TGG 0.494144 tig0028593:-9685 None:intergenic
CCGGTGATAACATCAAATTT+GGG 0.494860 tig0028593:+9982 Msa1438610:CDS
ACAACATTAATGAGTTCGGT+TGG 0.496036 tig0028593:+12655 Msa1438610:CDS
TTCGATGGCATTCCGATCAT+CGG 0.503475 tig0028593:+11269 Msa1438610:CDS
AACCTCAGACCACAACTGTT+GGG 0.503584 tig0028593:+11143 Msa1438610:CDS
CTCCCAACAGTTGTGGTCTG+AGG 0.506354 tig0028593:-11145 None:intergenic
TGTTCTTGTAGGAGCTATTG+TGG 0.507021 tig0028593:+13445 Msa1438610:CDS
TCCTTAACAGGTTAATTACA+AGG 0.507651 tig0028593:+13596 Msa1438610:three_prime_UTR
TAATGGGTTGTGGGTAAAGT+GGG 0.510030 tig0028593:-9675 None:intergenic
CCCAAATTTGATGTTATCAC+CGG 0.511014 tig0028593:-9982 None:intergenic
TATGCTAAAACCCCAACAAA+TGG 0.511723 tig0028593:-13548 None:intergenic
CAACCTCAGACCACAACTGT+TGG 0.514008 tig0028593:+11142 Msa1438610:CDS
GAATGAAATTAATGGGTTGT+GGG 0.515419 tig0028593:-9684 None:intergenic
TCCTCAACAGATTGCATGCA+AGG 0.516979 tig0028593:+13382 Msa1438610:CDS
CCTCAACGTTCTTGTCTCCA+AGG 0.518942 tig0028593:+12695 Msa1438610:CDS
TTAATGGGTTGTGGGTAAAG+TGG 0.519196 tig0028593:-9676 None:intergenic
AATGTGATGAATGAAATTAA+TGG 0.521183 tig0028593:-9692 None:intergenic
ATGATGTTTATGTGGATGAC+AGG 0.521412 tig0028593:+13483 Msa1438610:CDS
CAACAGATTGCATGCAAGGA+AGG 0.522778 tig0028593:+13386 Msa1438610:CDS
CAACATTAATGAGTTCGGTT+GGG 0.522809 tig0028593:+12656 Msa1438610:CDS
CTGGCCTCTCCCAACAGTTG+TGG 0.526446 tig0028593:-11152 None:intergenic
ATGTTAGTGCACAAACACTT+CGG 0.530340 tig0028593:+13225 Msa1438610:CDS
AAATGGCGCATTAATATATG+TGG 0.534377 tig0028593:-13531 None:intergenic
CTAAACTACATTCAAAGCAA+TGG 0.537231 tig0028593:+12612 Msa1438610:CDS
TCCTTGCATGCAATCTGTTG+AGG 0.537233 tig0028593:-13383 None:intergenic
GGGGAGCCGCATGGTTAAGG+AGG 0.537973 tig0028593:+12568 Msa1438610:CDS
CATCAAATTTGGGTTTCCGA+TGG 0.547688 tig0028593:+9992 Msa1438610:CDS
AGAGAGAGATGGGATTTGGA+GGG 0.549561 tig0028593:-9511 None:intergenic
GACCAGAGACAGAAGTGGCG+TGG 0.550720 tig0028593:+9897 Msa1438610:CDS
AATAACCGGGATCCGATGAT+CGG 0.551697 tig0028593:-11281 None:intergenic
AAAAGGTTTATATACAGGAA+AGG 0.553561 tig0028593:+13673 Msa1438610:three_prime_UTR
GTTCTTGTAGGAGCTATTGT+GGG 0.555313 tig0028593:+13446 Msa1438610:CDS
CCGACAGATAAACGAGGGAG+AGG 0.556209 tig0028593:-9457 None:intergenic
TGTCTGTTGGCTGGATACAT+AGG 0.556277 tig0028593:+13745 Msa1438610:three_prime_UTR
TAGAGATGAGATGGTGTCAC+GGG 0.556783 tig0028593:-9612 None:intergenic
TCAATATGCAGACAGTTACA+GGG 0.557642 tig0028593:+11338 Msa1438610:CDS
TCACACATCGAGTACACTCC+TGG 0.560468 tig0028593:+13080 Msa1438610:CDS
TTGGGAGAGGCCAGAAGACA+TGG 0.561765 tig0028593:+11161 Msa1438610:CDS
GGTTGGGACAACAAGCATGC+TGG 0.562101 tig0028593:+12672 Msa1438610:CDS
ATTGTTGTCGTAAACGCCAT+CGG 0.566271 tig0028593:-10008 None:intergenic
CTAACGCATTAGAGATGAGA+TGG 0.567462 tig0028593:-9621 None:intergenic
ACATAAACATCATCTTCTCC+AGG 0.567710 tig0028593:-13473 None:intergenic
TATTAATGCGCCATTTGTTG+GGG 0.570106 tig0028593:+13538 Msa1438610:CDS
ACCAGAGACAGAAGTGGCGT+GGG 0.571423 tig0028593:+9898 Msa1438610:CDS
CTACTGGTGATGCTGATTGG+AGG 0.572389 tig0028593:+9783 Msa1438610:CDS
ATTCGGGTTTGAGTGATGGG+TGG 0.574191 tig0028593:+9922 Msa1438610:CDS
CAAAGCAATGGTAAAACACT+CGG 0.575426 tig0028593:+12624 Msa1438610:CDS
ACCGGCGGTTACTACGACGC+CGG 0.576662 tig0028593:+9963 Msa1438610:CDS
GGAAGTATAAAATGGGTTTG+GGG 0.578043 tig0028593:-9721 None:intergenic
AACCCAGCTTCCGATGTCGC+CGG 0.578286 tig0028593:+11219 Msa1438610:CDS
GGCGCATTAATATATGTGGT+TGG 0.580585 tig0028593:-13527 None:intergenic
CCTCTCCCTCGTTTATCTGT+CGG 0.582430 tig0028593:+9457 Msa1438610:five_prime_UTR
CTTGTAGGAGCTATTGTGGG+AGG 0.586975 tig0028593:+13449 Msa1438610:CDS
TGGAGAAGATGATGTTTATG+TGG 0.587154 tig0028593:+13475 Msa1438610:CDS
CATCGAAGAAGCAGCAAGTG+CGG 0.597641 tig0028593:-11253 None:intergenic
AATTGTTATGGGGAGCCGCA+TGG 0.602591 tig0028593:+12559 Msa1438610:CDS
TCATCTTAAGAAAATCAAGA+AGG 0.603437 tig0028593:+13708 Msa1438610:three_prime_UTR
GCATAGGAAGCTCTCTGCTG+AGG 0.604029 tig0028593:-13033 None:intergenic
TGCATGCAATCTGTTGAGGA+TGG 0.606925 tig0028593:-13379 None:intergenic
GCATTCCGATCATCGGATCC+CGG 0.607253 tig0028593:+11276 Msa1438610:CDS
GGTCTGTATATGAGTCCACC+AGG 0.608813 tig0028593:-13098 None:intergenic
TTTCAGGTAGTAGTGTGCAT+AGG 0.626912 tig0028593:-13049 None:intergenic
CGAAGAAGCAGCAAGTGCGG+CGG 0.628435 tig0028593:-11250 None:intergenic
ATTTAACAAGAATAGAGTGA+GGG 0.633690 tig0028593:+13870 Msa1438610:three_prime_UTR
GCGTTTCTGAGTTCATTAGG+AGG 0.634386 tig0028593:-10068 None:intergenic
AACCATGTAAGATAAACCCA+AGG 0.635575 tig0028593:-13291 None:intergenic
AATTGGCGTAGACTAACTCA+AGG 0.637923 tig0028593:-13160 None:intergenic
TTAGAGATGAGATGGTGTCA+CGG 0.639592 tig0028593:-9613 None:intergenic
CAGACCACAACTGTTGGGAG+AGG 0.640454 tig0028593:+11148 Msa1438610:CDS
CAGAGGACCAGAGACAGAAG+TGG 0.641335 tig0028593:+9892 Msa1438610:CDS
ACCATGTAAGATAAACCCAA+GGG 0.641726 tig0028593:-13290 None:intergenic
ACGTCACAAACCATCAATTG+TGG 0.642957 tig0028593:+13194 Msa1438610:CDS
TACAACACTGATCTTACCGG+CGG 0.646779 tig0028593:+9948 Msa1438610:CDS
TTACGACAACAATGTTGTCG+TGG 0.652135 tig0028593:+10018 Msa1438610:CDS
GACAATGCTGATGTTAAGGA+TGG 0.656075 tig0028593:+11372 Msa1438610:CDS
AATTTAACAAGAATAGAGTG+AGG 0.657793 tig0028593:+13869 Msa1438610:three_prime_UTR
ACCGGCGTCGTAGTAACCGC+CGG 0.660182 tig0028593:-9964 None:intergenic
ATAGAGTGAGGGTGTCATTG+TGG 0.661242 tig0028593:+13881 Msa1438610:three_prime_UTR
AGTAATGTCTCAGAATAACC+GGG 0.665758 tig0028593:-11294 None:intergenic
GTACAGGACGAATTGTTATG+GGG 0.670217 tig0028593:+12549 Msa1438610:intron
TTATGCGGAGGCATTATCGA+AGG 0.671544 tig0028593:+9830 Msa1438610:CDS
CACATCGAGTACACTCCTGG+TGG 0.672404 tig0028593:+13083 Msa1438610:CDS
GGTGGACTCATATACAGACC+AGG 0.674184 tig0028593:+13101 Msa1438610:CDS
TCTTTGAAGGACAACGTTCG+GGG 0.677942 tig0028593:+9862 Msa1438610:CDS
GGGAGCCGCATGGTTAAGGA+GGG 0.683185 tig0028593:+12569 Msa1438610:CDS
CAATATGCAGACAGTTACAG+GGG 0.695263 tig0028593:+11339 Msa1438610:CDS
CCACGATGATGAATACGTTG+TGG 0.695422 tig0028593:-13332 None:intergenic
TGTGAATGCACATGATTATG+CGG 0.701086 tig0028593:+9815 Msa1438610:CDS
AAGCGCCGACAGATAAACGA+GGG 0.724034 tig0028593:-9462 None:intergenic
CCTTGGAGACAAGAACGTTG+AGG 0.724038 tig0028593:-12695 None:intergenic
CCACAACGTATTCATCATCG+TGG 0.724350 tig0028593:+13332 Msa1438610:CDS
TGATGTTTATGTGGATGACA+GGG 0.726322 tig0028593:+13484 Msa1438610:CDS
CCATGTAAGATAAACCCAAG+GGG 0.735452 tig0028593:-13289 None:intergenic
AGTAGCCCTCCTTAACCATG+CGG 0.745611 tig0028593:-12574 None:intergenic
GGACTCATATACAGACCAGG+AGG 0.746362 tig0028593:+13104 Msa1438610:CDS
GAATGCACATGATTATGCGG+AGG 0.747781 tig0028593:+9818 Msa1438610:CDS
AAAGCGCCGACAGATAAACG+AGG 0.756166 tig0028593:-9463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAATAA+AGG - tig0028593:10291-10310 None:intergenic 0.0%
!!! TAAATTTCTTTTTTGATTAA+GGG - tig0028593:10354-10373 None:intergenic 10.0%
!! TTAATCAAAAAAGAAATTTA+CGG + tig0028593:10354-10373 Msa1438610:intron 10.0%
!! AATTTACTTATAAAAAGAAA+TGG - tig0028593:10513-10532 None:intergenic 10.0%
!! ATTCTCATTAATTTAAAAAT+TGG - tig0028593:10984-11003 None:intergenic 10.0%
!! ATATTAGATATATCAAAAAA+TGG + tig0028593:11033-11052 Msa1438610:intron 10.0%
!!! TTCTAATAATAAATACTTTT+TGG + tig0028593:11793-11812 Msa1438610:intron 10.0%
!! ATTAGTTAATTAATTAAAAG+TGG + tig0028593:12221-12240 Msa1438610:intron 10.0%
!! AAATAAATAAATAAAGGAAG+AGG - tig0028593:10285-10304 None:intergenic 15.0%
!!! GTAAATTTCTTTTTTGATTA+AGG - tig0028593:10355-10374 None:intergenic 15.0%
!!! AATTTGCTTGTATAAAAAAA+CGG + tig0028593:10590-10609 Msa1438610:intron 15.0%
!! TCATTAATTTAAAAATTGGA+TGG - tig0028593:10980-10999 None:intergenic 15.0%
!! TGTCATGTAATTTAATAATT+AGG - tig0028593:11093-11112 None:intergenic 15.0%
!!! GAATTTAGAATTATAAAAAC+AGG + tig0028593:11832-11851 Msa1438610:intron 15.0%
!! ATGTGATGAATGAAATTAAT+GGG - tig0028593:9694-9713 None:intergenic 20.0%
!! AATGTGATGAATGAAATTAA+TGG - tig0028593:9695-9714 None:intergenic 20.0%
!!! CCATTTCAATAAATTGATTT+AGG - tig0028593:10384-10403 None:intergenic 20.0%
!! CCTAAATCAATTTATTGAAA+TGG + tig0028593:10381-10400 Msa1438610:intron 20.0%
!! CAAAAAAAAAAAACTGAAAG+CGG - tig0028593:10462-10481 None:intergenic 20.0%
!! TTGTTCACATTTAGAAATAT+AGG + tig0028593:10479-10498 Msa1438610:intron 20.0%
!! TACTTATAAAAAGAAATGGA+AGG - tig0028593:10509-10528 None:intergenic 20.0%
!!! TCAAAATCATCATTTTTCTT+AGG - tig0028593:10658-10677 None:intergenic 20.0%
!!! ATTGCATTTTTCCTTTTTAT+AGG + tig0028593:11475-11494 Msa1438610:intron 20.0%
!! AAAATTCAAAACGATAACAT+CGG - tig0028593:11504-11523 None:intergenic 20.0%
!!! ACATTGATAATGATAGTATA+TGG + tig0028593:11535-11554 Msa1438610:intron 20.0%
!! TGTATTCATTTCATATCATA+TGG + tig0028593:11722-11741 Msa1438610:intron 20.0%
!! GTATTCATTTCATATCATAT+GGG + tig0028593:11723-11742 Msa1438610:intron 20.0%
!! TATTAGAAATTGAGTGTAAA+AGG - tig0028593:11781-11800 None:intergenic 20.0%
!! TAAGGTTTGAAAAATATAAG+CGG + tig0028593:11907-11926 Msa1438610:intron 20.0%
!! TAAATTGAATAGTGCATATT+TGG - tig0028593:12057-12076 None:intergenic 20.0%
!!! CTATTTGCTACAATATTAAT+TGG + tig0028593:12509-12528 Msa1438610:intron 20.0%
!! AAATTTGAATTGAATAGAGA+TGG - tig0028593:12723-12742 None:intergenic 20.0%
!!! AGTAAATGAATTGTTGTTAT+AGG + tig0028593:12968-12987 Msa1438610:intron 20.0%
!! ATAGTAAAAGGTTTATATAC+AGG + tig0028593:13668-13687 Msa1438610:three_prime_UTR 20.0%
!!! CCATTTTGGAAGTATAAAAT+GGG - tig0028593:9731-9750 None:intergenic 25.0%
! AAATAAATAAAGGAAGAGGA+AGG - tig0028593:10281-10300 None:intergenic 25.0%
! GATCGTAAATGTAAATAAAC+TGG - tig0028593:10440-10459 None:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG + tig0028593:10547-10566 Msa1438610:intron 25.0%
! GTAGTGATGACAAAAATAAA+GGG - tig0028593:10686-10705 None:intergenic 25.0%
! TGTAGTGATGACAAAAATAA+AGG - tig0028593:10687-10706 None:intergenic 25.0%
!!! TATTTTTGTCATCACTACAA+AGG + tig0028593:10688-10707 Msa1438610:intron 25.0%
! GTATACAGTTATAATCGAAA+CGG - tig0028593:10924-10943 None:intergenic 25.0%
!!! AAATGGTTGATGACAAAATT+TGG + tig0028593:11050-11069 Msa1438610:intron 25.0%
! CCATCAAAATCACAATAATA+AGG - tig0028593:11405-11424 None:intergenic 25.0%
!! CCTTATTATTGTGATTTTGA+TGG + tig0028593:11402-11421 Msa1438610:CDS 25.0%
! CAATCAACATCGAATTATAT+AGG + tig0028593:12352-12371 Msa1438610:intron 25.0%
! TTATTACTAGTACTATGTGA+AGG + tig0028593:12414-12433 Msa1438610:intron 25.0%
! TATTACTAGTACTATGTGAA+GGG + tig0028593:12415-12434 Msa1438610:intron 25.0%
! TGCTACAATATTAATTGGTT+TGG + tig0028593:12514-12533 Msa1438610:intron 25.0%
!!! AGACAAGTTGATTACATTTT+AGG + tig0028593:13260-13279 Msa1438610:CDS 25.0%
! TTAACCTGTTAAGGATTAAT+GGG - tig0028593:13591-13610 None:intergenic 25.0%
! ATTAACCTGTTAAGGATTAA+TGG - tig0028593:13592-13611 None:intergenic 25.0%
!! CTTCTTTTGTAGATAGTAAA+AGG + tig0028593:13656-13675 Msa1438610:three_prime_UTR 25.0%
! AAAAGGTTTATATACAGGAA+AGG + tig0028593:13673-13692 Msa1438610:three_prime_UTR 25.0%
! TCATCTTAAGAAAATCAAGA+AGG + tig0028593:13708-13727 Msa1438610:three_prime_UTR 25.0%
! AATTTAACAAGAATAGAGTG+AGG + tig0028593:13869-13888 Msa1438610:three_prime_UTR 25.0%
! ATTTAACAAGAATAGAGTGA+GGG + tig0028593:13870-13889 Msa1438610:three_prime_UTR 25.0%
! CTAACTTCTTCTTAACTTAT+TGG + tig0028593:13963-13982 Msa1438610:three_prime_UTR 25.0%
GTCTGTCTCTTAAATAAACT+TGG + tig0028593:9575-9594 Msa1438610:five_prime_UTR 30.0%
!! GAATGAAATTAATGGGTTGT+GGG - tig0028593:9687-9706 None:intergenic 30.0%
!! TGAATGAAATTAATGGGTTG+TGG - tig0028593:9688-9707 None:intergenic 30.0%
! TGGAAGTATAAAATGGGTTT+GGG - tig0028593:9725-9744 None:intergenic 30.0%
! TTGGAAGTATAAAATGGGTT+TGG - tig0028593:9726-9745 None:intergenic 30.0%
! CCCATTTTATACTTCCAAAA+TGG + tig0028593:9728-9747 Msa1438610:exon 30.0%
!! GCCATTTTGGAAGTATAAAA+TGG - tig0028593:9732-9751 None:intergenic 30.0%
TTATACTTCCAAAATGGCAT+TGG + tig0028593:9734-9753 Msa1438610:exon 30.0%
ATTGTACCTGAACAAAAATG+CGG - tig0028593:10151-10170 None:intergenic 30.0%
ACAATTTACTACTGAATCGT+TGG + tig0028593:10166-10185 Msa1438610:intron 30.0%
CAATTTACTACTGAATCGTT+GGG + tig0028593:10167-10186 Msa1438610:intron 30.0%
TTGCTTGTATAAAAAAACGG+AGG + tig0028593:10593-10612 Msa1438610:intron 30.0%
TGCTTGTATAAAAAAACGGA+GGG + tig0028593:10594-10613 Msa1438610:intron 30.0%
!! AAATTTTCCGTGTCATTATG+TGG + tig0028593:10796-10815 Msa1438610:intron 30.0%
AGTTATAATCGAAACGGAAA+TGG - tig0028593:10918-10937 None:intergenic 30.0%
ACATTGTACATGCTACTATT+AGG + tig0028593:11110-11129 Msa1438610:intron 30.0%
ATTACTCAGAAATGCTGTTA+AGG + tig0028593:11311-11330 Msa1438610:CDS 30.0%
AACTATACTACTTACTAACC+TGG - tig0028593:11431-11450 None:intergenic 30.0%
AACATCGGATACCTATAAAA+AGG - tig0028593:11489-11508 None:intergenic 30.0%
! ATTTCATATCATATGGGCTA+TGG + tig0028593:11729-11748 Msa1438610:intron 30.0%
TAGAAATTGAGTGTAAAAGG+TGG - tig0028593:11778-11797 None:intergenic 30.0%
! ACAAGTGATTTTGCGAAATA+AGG + tig0028593:11889-11908 Msa1438610:intron 30.0%
GTTTGAAAAATATAAGCGGT+GGG + tig0028593:11911-11930 Msa1438610:intron 30.0%
!!! TTTGGAATTTTTTGCCAGTT+AGG + tig0028593:11934-11953 Msa1438610:intron 30.0%
ACAACAAAGCTTCTGTAAAA+CGG - tig0028593:11993-12012 None:intergenic 30.0%
! AATTGCATCTCGAGAATTTT+TGG + tig0028593:12298-12317 Msa1438610:intron 30.0%
ATTACTAGTACTATGTGAAG+GGG + tig0028593:12416-12435 Msa1438610:intron 30.0%
TTGGATACATTACATTGTAC+AGG + tig0028593:12533-12552 Msa1438610:intron 30.0%
! CATTGCTTTGAATGTAGTTT+AGG - tig0028593:12614-12633 None:intergenic 30.0%
CTAAACTACATTCAAAGCAA+TGG + tig0028593:12612-12631 Msa1438610:CDS 30.0%
GAAGACAACATTAATGAGTT+CGG + tig0028593:12651-12670 Msa1438610:CDS 30.0%
ATAAACATTGCCACAATTGA+TGG - tig0028593:13207-13226 None:intergenic 30.0%
AATGTAATCAACTTGTCTCT+TGG - tig0028593:13258-13277 None:intergenic 30.0%
! TTATCTTACATGGTTGGTTA+TGG + tig0028593:13299-13318 Msa1438610:CDS 30.0%
AAATGGCGCATTAATATATG+TGG - tig0028593:13534-13553 None:intergenic 30.0%
TATATTAATGCGCCATTTGT+TGG + tig0028593:13536-13555 Msa1438610:CDS 30.0%
ATATTAATGCGCCATTTGTT+GGG + tig0028593:13537-13556 Msa1438610:CDS 30.0%
TAATCCCATTAATCCTTAAC+AGG + tig0028593:13584-13603 Msa1438610:exon 30.0%
TCCTTAACAGGTTAATTACA+AGG + tig0028593:13596-13615 Msa1438610:three_prime_UTR 30.0%
TCCTTGTAATTAACCTGTTA+AGG - tig0028593:13600-13619 None:intergenic 30.0%
! ATATGTGACTTTTCCATTGA+AGG + tig0028593:13796-13815 Msa1438610:three_prime_UTR 30.0%
! TATGTGACTTTTCCATTGAA+GGG + tig0028593:13797-13816 Msa1438610:three_prime_UTR 30.0%
AATCAAAACAAAAAGCTTCG+TGG - tig0028593:13933-13952 None:intergenic 30.0%
! TATAAAATGGGTTTGGGGTA+AGG - tig0028593:9719-9738 None:intergenic 35.0%
! GGAAGTATAAAATGGGTTTG+GGG - tig0028593:9724-9743 None:intergenic 35.0%
TGTGAATGCACATGATTATG+CGG + tig0028593:9815-9834 Msa1438610:CDS 35.0%
AAGGCAATCATGTTCTTTGA+AGG + tig0028593:9849-9868 Msa1438610:CDS 35.0%
ACTTACAACACTGATCTTAC+CGG + tig0028593:9945-9964 Msa1438610:CDS 35.0%
CCCAAATTTGATGTTATCAC+CGG - tig0028593:9985-10004 None:intergenic 35.0%
CCGGTGATAACATCAAATTT+GGG + tig0028593:9982-10001 Msa1438610:CDS 35.0%
! AAAGCGTTTCTGAGTTCATT+AGG - tig0028593:10074-10093 None:intergenic 35.0%
TAATGAACTCAGAAACGCTT+TGG + tig0028593:10073-10092 Msa1438610:CDS 35.0%
TTCTTAGGAACGACTAAACA+TGG - tig0028593:10643-10662 None:intergenic 35.0%
TTGAAGTCCGTGAATTTCAT+CGG + tig0028593:10843-10862 Msa1438610:intron 35.0%
TTGTACATGCTACTATTAGG+TGG + tig0028593:11113-11132 Msa1438610:intron 35.0%
TGTACATGCTACTATTAGGT+GGG + tig0028593:11114-11133 Msa1438610:intron 35.0%
AGTAATGTCTCAGAATAACC+GGG - tig0028593:11297-11316 None:intergenic 35.0%
GAGTAATGTCTCAGAATAAC+CGG - tig0028593:11298-11317 None:intergenic 35.0%
TTCAATATGCAGACAGTTAC+AGG + tig0028593:11337-11356 Msa1438610:CDS 35.0%
TCAATATGCAGACAGTTACA+GGG + tig0028593:11338-11357 Msa1438610:CDS 35.0%
!! TTGTGATTTTGATGGATACC+AGG + tig0028593:11410-11429 Msa1438610:CDS 35.0%
AAATCCGAAGCAAACTATTG+TGG + tig0028593:11650-11669 Msa1438610:intron 35.0%
!! TTTGCCACAATAGTTTGCTT+CGG - tig0028593:11657-11676 None:intergenic 35.0%
GGTTTGAAAAATATAAGCGG+TGG + tig0028593:11910-11929 Msa1438610:intron 35.0%
! AAAAATATAAGCGGTGGGTT+TGG + tig0028593:11916-11935 Msa1438610:intron 35.0%
TAACACTTCCATTATGTGTC+GGG - tig0028593:12274-12293 None:intergenic 35.0%
GTAACACTTCCATTATGTGT+CGG - tig0028593:12275-12294 None:intergenic 35.0%
AAGGGGTAATATTTGTCTGA+GGG + tig0028593:12433-12452 Msa1438610:intron 35.0%
TTGTACAGGACGAATTGTTA+TGG + tig0028593:12547-12566 Msa1438610:intron 35.0%
TGTACAGGACGAATTGTTAT+GGG + tig0028593:12548-12567 Msa1438610:intron 35.0%
CAAAGCAATGGTAAAACACT+CGG + tig0028593:12624-12643 Msa1438610:CDS 35.0%
ACAACATTAATGAGTTCGGT+TGG + tig0028593:12655-12674 Msa1438610:CDS 35.0%
CAACATTAATGAGTTCGGTT+GGG + tig0028593:12656-12675 Msa1438610:CDS 35.0%
ATTGAATAGAGATGGAACCT+TGG - tig0028593:12715-12734 None:intergenic 35.0%
TTGTTATAGGAAGTCCTAGA+AGG + tig0028593:12981-13000 Msa1438610:intron 35.0%
GAGATTCAACATTTCCTTCT+AGG - tig0028593:12998-13017 None:intergenic 35.0%
ATGTGTGAACTTGATGTTTC+AGG - tig0028593:13068-13087 None:intergenic 35.0%
ATGTTAGTGCACAAACACTT+CGG + tig0028593:13225-13244 Msa1438610:CDS 35.0%
!! ATTTTAGGTGATAACCCCTT+GGG + tig0028593:13275-13294 Msa1438610:CDS 35.0%
ACCATGTAAGATAAACCCAA+GGG - tig0028593:13293-13312 None:intergenic 35.0%
AACCATGTAAGATAAACCCA+AGG - tig0028593:13294-13313 None:intergenic 35.0%
TTGGGTTTATCTTACATGGT+TGG + tig0028593:13293-13312 Msa1438610:CDS 35.0%
CTCATCTCTACCTTCTATTA+AGG + tig0028593:13355-13374 Msa1438610:CDS 35.0%
TAGCTCCTACAAGAACATTT+GGG - tig0028593:13442-13461 None:intergenic 35.0%
ATAGCTCCTACAAGAACATT+TGG - tig0028593:13443-13462 None:intergenic 35.0%
ACATAAACATCATCTTCTCC+AGG - tig0028593:13476-13495 None:intergenic 35.0%
TGGAGAAGATGATGTTTATG+TGG + tig0028593:13475-13494 Msa1438610:CDS 35.0%
ATGATGTTTATGTGGATGAC+AGG + tig0028593:13483-13502 Msa1438610:CDS 35.0%
TGATGTTTATGTGGATGACA+GGG + tig0028593:13484-13503 Msa1438610:CDS 35.0%
! TATTAATGCGCCATTTGTTG+GGG + tig0028593:13538-13557 Msa1438610:CDS 35.0%
TATGCTAAAACCCCAACAAA+TGG - tig0028593:13551-13570 None:intergenic 35.0%
! GTGGTTGTTTGTTAATTGTC+TGG + tig0028593:13900-13919 Msa1438610:three_prime_UTR 35.0%
ATTTGGAGGGAAGTAGTAGT+AGG - tig0028593:9501-9520 None:intergenic 40.0%
AAAGAGAGAGAGAGAGAGAT+GGG - tig0028593:9524-9543 None:intergenic 40.0%
AAAAGAGAGAGAGAGAGAGA+TGG - tig0028593:9525-9544 None:intergenic 40.0%
! TTAGAGATGAGATGGTGTCA+CGG - tig0028593:9616-9635 None:intergenic 40.0%
CTAACGCATTAGAGATGAGA+TGG - tig0028593:9624-9643 None:intergenic 40.0%
!! TAATGGGTTGTGGGTAAAGT+GGG - tig0028593:9678-9697 None:intergenic 40.0%
!! TTAATGGGTTGTGGGTAAAG+TGG - tig0028593:9679-9698 None:intergenic 40.0%
AACAAACAGCAACGATTTGC+TGG - tig0028593:9760-9779 None:intergenic 40.0%
!! GTTGCTGTTTGTTCTACTAC+TGG + tig0028593:9767-9786 Msa1438610:CDS 40.0%
! GTTCTTTGAAGGACAACGTT+CGG + tig0028593:9860-9879 Msa1438610:CDS 40.0%
! TTCTTTGAAGGACAACGTTC+GGG + tig0028593:9861-9880 Msa1438610:CDS 40.0%
GCCGGTGATAACATCAAATT+TGG + tig0028593:9981-10000 Msa1438610:CDS 40.0%
! CATCAAATTTGGGTTTCCGA+TGG + tig0028593:9992-10011 Msa1438610:CDS 40.0%
ATTGTTGTCGTAAACGCCAT+CGG - tig0028593:10011-10030 None:intergenic 40.0%
TTACGACAACAATGTTGTCG+TGG + tig0028593:10018-10037 Msa1438610:CDS 40.0%
! GTCTAACCGCATTTTTGTTC+AGG + tig0028593:10142-10161 Msa1438610:CDS 40.0%
ATAAACTGGCACAGCTATCA+AGG - tig0028593:10426-10445 None:intergenic 40.0%
GATGAAATTCACGGACTTCA+AGG - tig0028593:10844-10863 None:intergenic 40.0%
TGCAAAGCCGATGAAATTCA+CGG - tig0028593:10853-10872 None:intergenic 40.0%
ATGAGTAACACTGCCATGTT+TGG - tig0028593:10954-10973 None:intergenic 40.0%
CAATATGCAGACAGTTACAG+GGG + tig0028593:11339-11358 Msa1438610:CDS 40.0%
CAGTGACAATGCTGATGTTA+AGG + tig0028593:11368-11387 Msa1438610:CDS 40.0%
GACAATGCTGATGTTAAGGA+TGG + tig0028593:11372-11391 Msa1438610:CDS 40.0%
! TAGAGTGTTTGATCACGTGA+AGG - tig0028593:11578-11597 None:intergenic 40.0%
! ATATCATATGGGCTATGGCA+TGG + tig0028593:11734-11753 Msa1438610:intron 40.0%
! TATCATATGGGCTATGGCAT+GGG + tig0028593:11735-11754 Msa1438610:intron 40.0%
TGAGTGTAAAAGGTGGATGT+GGG - tig0028593:11771-11790 None:intergenic 40.0%
TTGAGTGTAAAAGGTGGATG+TGG - tig0028593:11772-11791 None:intergenic 40.0%
! TTTTGCCAGTTAGGACATGT+CGG + tig0028593:11943-11962 Msa1438610:intron 40.0%
GAAGGGGTAATATTTGTCTG+AGG + tig0028593:12432-12451 Msa1438610:intron 40.0%
AGGGCAATTCGTGTATTTAG+TGG + tig0028593:12452-12471 Msa1438610:intron 40.0%
GTACAGGACGAATTGTTATG+GGG + tig0028593:12549-12568 Msa1438610:intron 40.0%
! TTTCAGGTAGTAGTGTGCAT+AGG - tig0028593:13052-13071 None:intergenic 40.0%
AATTGGCGTAGACTAACTCA+AGG - tig0028593:13163-13182 None:intergenic 40.0%
TGACGTGCGAGATAAGTAAT+TGG - tig0028593:13180-13199 None:intergenic 40.0%
ACGTCACAAACCATCAATTG+TGG + tig0028593:13194-13213 Msa1438610:CDS 40.0%
TGTTAGTGCACAAACACTTC+GGG + tig0028593:13226-13245 Msa1438610:CDS 40.0%
!! CATTTTAGGTGATAACCCCT+TGG + tig0028593:13274-13293 Msa1438610:CDS 40.0%
CCATGTAAGATAAACCCAAG+GGG - tig0028593:13292-13311 None:intergenic 40.0%
TGAGGATGGTCCTTAATAGA+AGG - tig0028593:13368-13387 None:intergenic 40.0%
! CCTACAAGAACATTTGGGTT+AGG - tig0028593:13437-13456 None:intergenic 40.0%
CCTAACCCAAATGTTCTTGT+AGG + tig0028593:13434-13453 Msa1438610:CDS 40.0%
TGTTCTTGTAGGAGCTATTG+TGG + tig0028593:13445-13464 Msa1438610:CDS 40.0%
GTTCTTGTAGGAGCTATTGT+GGG + tig0028593:13446-13465 Msa1438610:CDS 40.0%
GGCGCATTAATATATGTGGT+TGG - tig0028593:13530-13549 None:intergenic 40.0%
!! TCTCGTTTTTCACCCTTCAA+TGG - tig0028593:13812-13831 None:intergenic 40.0%
AGAGAGAGATGGGATTTGGA+GGG - tig0028593:9514-9533 None:intergenic 45.0%
AGAGAGAGAGAGATGGGATT+TGG - tig0028593:9518-9537 None:intergenic 45.0%
!! TAGAGATGAGATGGTGTCAC+GGG - tig0028593:9615-9634 None:intergenic 45.0%
!! TTTGCTGGCCAATGCCATTT+TGG - tig0028593:9745-9764 None:intergenic 45.0%
! CTACTACTGGTGATGCTGAT+TGG + tig0028593:9780-9799 Msa1438610:CDS 45.0%
GAATGCACATGATTATGCGG+AGG + tig0028593:9818-9837 Msa1438610:CDS 45.0%
!! TTATGCGGAGGCATTATCGA+AGG + tig0028593:9830-9849 Msa1438610:CDS 45.0%
! TCTTTGAAGGACAACGTTCG+GGG + tig0028593:9862-9881 Msa1438610:CDS 45.0%
! GGAATTCGGGTTTGAGTGAT+GGG + tig0028593:9919-9938 Msa1438610:CDS 45.0%
TACAACACTGATCTTACCGG+CGG + tig0028593:9948-9967 Msa1438610:CDS 45.0%
TCGTGGAGTGTGATTGAGTT+TGG + tig0028593:10035-10054 Msa1438610:CDS 45.0%
GCGTTTCTGAGTTCATTAGG+AGG - tig0028593:10071-10090 None:intergenic 45.0%
GAGTGAGTGAGAAAGAGAAG+TGG - tig0028593:10233-10252 None:intergenic 45.0%
TATCAAGGAAGAACGCACGA+TGG - tig0028593:10411-10430 None:intergenic 45.0%
! TTCCGTGTCATTATGTGGAC+TGG + tig0028593:10801-10820 Msa1438610:intron 45.0%
CTCCAGTCCACATAATGACA+CGG - tig0028593:10806-10825 None:intergenic 45.0%
!! TGTCATTATGTGGACTGGAG+TGG + tig0028593:10806-10825 Msa1438610:intron 45.0%
AACCTCAGACCACAACTGTT+GGG + tig0028593:11143-11162 Msa1438610:CDS 45.0%
CTGTTTGTGTCCATGTCTTC+TGG - tig0028593:11174-11193 None:intergenic 45.0%
CAGAAGACATGGACACAAAC+AGG + tig0028593:11172-11191 Msa1438610:CDS 45.0%
TTCGATGGCATTCCGATCAT+CGG + tig0028593:11269-11288 Msa1438610:CDS 45.0%
AATAACCGGGATCCGATGAT+CGG - tig0028593:11284-11303 None:intergenic 45.0%
TTACACCGACATGTCCTAAC+TGG - tig0028593:11951-11970 None:intergenic 45.0%
GTTAGGACATGTCGGTGTAA+TGG + tig0028593:11951-11970 Msa1438610:intron 45.0%
TGTTGTAAGTTGCTTCCTCC+TGG - tig0028593:13122-13141 None:intergenic 45.0%
CCCCTTGGGTTTATCTTACA+TGG + tig0028593:13289-13308 Msa1438610:CDS 45.0%
CCACGATGATGAATACGTTG+TGG - tig0028593:13335-13354 None:intergenic 45.0%
CCACAACGTATTCATCATCG+TGG + tig0028593:13332-13351 Msa1438610:CDS 45.0%
TGCATGCAATCTGTTGAGGA+TGG - tig0028593:13382-13401 None:intergenic 45.0%
TCCTCAACAGATTGCATGCA+AGG + tig0028593:13382-13401 Msa1438610:CDS 45.0%
TCCTTGCATGCAATCTGTTG+AGG - tig0028593:13386-13405 None:intergenic 45.0%
CAACAGATTGCATGCAAGGA+AGG + tig0028593:13386-13405 Msa1438610:CDS 45.0%
! AGAGACTTGCTTGTGTCTGT+TGG + tig0028593:13732-13751 Msa1438610:three_prime_UTR 45.0%
! TGTCTGTTGGCTGGATACAT+AGG + tig0028593:13745-13764 Msa1438610:three_prime_UTR 45.0%
!! ATAGAGTGAGGGTGTCATTG+TGG + tig0028593:13881-13900 Msa1438610:three_prime_UTR 45.0%
!!! TTTATTTATTTATTACATTT+TGG + tig0028593:10298-10317 Msa1438610:intron 5.0%
CCTCTCCCTCGTTTATCTGT+CGG + tig0028593:9457-9476 Msa1438610:five_prime_UTR 50.0%
!! AAGCGCCGACAGATAAACGA+GGG - tig0028593:9465-9484 None:intergenic 50.0%
!! AAAGCGCCGACAGATAAACG+AGG - tig0028593:9466-9485 None:intergenic 50.0%
GAGAGAGAGATGGGATTTGG+AGG - tig0028593:9515-9534 None:intergenic 50.0%
! CTACTGGTGATGCTGATTGG+AGG + tig0028593:9783-9802 Msa1438610:CDS 50.0%
! ACGTTCGGGGTTTTTACCAG+AGG + tig0028593:9875-9894 Msa1438610:CDS 50.0%
ACAGAAGTGGCGTGGGAATT+CGG + tig0028593:9905-9924 Msa1438610:CDS 50.0%
! GGGAATTCGGGTTTGAGTGA+TGG + tig0028593:9918-9937 Msa1438610:CDS 50.0%
! ATTCGGGTTTGAGTGATGGG+TGG + tig0028593:9922-9941 Msa1438610:CDS 50.0%
ACGCTTTGGTCGCAATTCGT+TGG + tig0028593:10087-10106 Msa1438610:CDS 50.0%
! TGGGTTGACTCACTCACTCA+CGG + tig0028593:10186-10205 Msa1438610:intron 50.0%
TTGACTCACTCACTCACGGA+CGG + tig0028593:10190-10209 Msa1438610:intron 50.0%
AGGAAGAGGAAGGAGTGAGT+AGG - tig0028593:10271-10290 None:intergenic 50.0%
CGGACTTCAAGGATACGAAC+TGG - tig0028593:10833-10852 None:intergenic 50.0%
! CAACAGTTGTGGTCTGAGGT+TGG - tig0028593:11144-11163 None:intergenic 50.0%
CAACCTCAGACCACAACTGT+TGG + tig0028593:11142-11161 Msa1438610:CDS 50.0%
CATCGAAGAAGCAGCAAGTG+CGG - tig0028593:11256-11275 None:intergenic 50.0%
CACGTGATCCCGACACATAA+TGG + tig0028593:12263-12282 Msa1438610:intron 50.0%
AATTGTTATGGGGAGCCGCA+TGG + tig0028593:12559-12578 Msa1438610:CDS 50.0%
AGTAGCCCTCCTTAACCATG+CGG - tig0028593:12577-12596 None:intergenic 50.0%
ATGGTTAAGGAGGGCTACTC+AGG + tig0028593:12578-12597 Msa1438610:CDS 50.0%
CCTTGGAGACAAGAACGTTG+AGG - tig0028593:12698-12717 None:intergenic 50.0%
CCTCAACGTTCTTGTCTCCA+AGG + tig0028593:12695-12714 Msa1438610:CDS 50.0%
AAAAAACAATTCGCCCCCCG+TGG + tig0028593:12806-12825 Msa1438610:intron 50.0%
AAAAACAATTCGCCCCCCGT+GGG + tig0028593:12807-12826 Msa1438610:intron 50.0%
GCTCTTAACCTTGTGGTCGT+GGG - tig0028593:12840-12859 None:intergenic 50.0%
GCTCTACCAACTGAGCTAGA+CGG + tig0028593:12865-12884 Msa1438610:intron 50.0%
CTCTACCAACTGAGCTAGAC+GGG + tig0028593:12866-12885 Msa1438610:intron 50.0%
TCACACATCGAGTACACTCC+TGG + tig0028593:13080-13099 Msa1438610:CDS 50.0%
GGTCTGTATATGAGTCCACC+AGG - tig0028593:13101-13120 None:intergenic 50.0%
! GGTGGACTCATATACAGACC+AGG + tig0028593:13101-13120 Msa1438610:CDS 50.0%
GGACTCATATACAGACCAGG+AGG + tig0028593:13104-13123 Msa1438610:CDS 50.0%
CTTGTAGGAGCTATTGTGGG+AGG + tig0028593:13449-13468 Msa1438610:CDS 50.0%
ACTTGCTTGTGTCTGTTGGC+TGG + tig0028593:13736-13755 Msa1438610:three_prime_UTR 50.0%
CCGACAGATAAACGAGGGAG+AGG - tig0028593:9460-9479 None:intergenic 55.0%
CACTTCTGTCTCTGGTCCTC+TGG - tig0028593:9894-9913 None:intergenic 55.0%
CAGAGGACCAGAGACAGAAG+TGG + tig0028593:9892-9911 Msa1438610:CDS 55.0%
ACCAGAGACAGAAGTGGCGT+GGG + tig0028593:9898-9917 Msa1438610:CDS 55.0%
CAGAAGTGGCGTGGGAATTC+GGG + tig0028593:9906-9925 Msa1438610:CDS 55.0%
GTATACCCACGCGCCAAACA+TGG + tig0028593:10938-10957 Msa1438610:intron 55.0%
CTCCCAACAGTTGTGGTCTG+AGG - tig0028593:11148-11167 None:intergenic 55.0%
CAGACCACAACTGTTGGGAG+AGG + tig0028593:11148-11167 Msa1438610:CDS 55.0%
TTGGGAGAGGCCAGAAGACA+TGG + tig0028593:11161-11180 Msa1438610:CDS 55.0%
! CGCACTTGCTGCTTCTTCGA+TGG + tig0028593:11254-11273 Msa1438610:CDS 55.0%
GCATTCCGATCATCGGATCC+CGG + tig0028593:11276-11295 Msa1438610:CDS 55.0%
TATGGGGAGCCGCATGGTTA+AGG + tig0028593:12565-12584 Msa1438610:CDS 55.0%
GGTTGGGACAACAAGCATGC+TGG + tig0028593:12672-12691 Msa1438610:CDS 55.0%
AAAACAATTCGCCCCCCGTG+GGG + tig0028593:12808-12827 Msa1438610:intron 55.0%
GGCTCTTAACCTTGTGGTCG+TGG - tig0028593:12841-12860 None:intergenic 55.0%
GCGCAAGGCTCTTAACCTTG+TGG - tig0028593:12847-12866 None:intergenic 55.0%
!! AGCTCAGTTGGTAGAGCGCA+AGG - tig0028593:12862-12881 None:intergenic 55.0%
! AACAGCCCGTCTAGCTCAGT+TGG - tig0028593:12874-12893 None:intergenic 55.0%
GCATAGGAAGCTCTCTGCTG+AGG - tig0028593:13036-13055 None:intergenic 55.0%
CACATCGAGTACACTCCTGG+TGG + tig0028593:13083-13102 Msa1438610:CDS 55.0%
GACCAGAGACAGAAGTGGCG+TGG + tig0028593:9897-9916 Msa1438610:CDS 60.0%
TCCCACGCCACTTCTGTCTC+TGG - tig0028593:9902-9921 None:intergenic 60.0%
CACTGCCATGTTTGGCGCGT+GGG - tig0028593:10946-10965 None:intergenic 60.0%
ACACTGCCATGTTTGGCGCG+TGG - tig0028593:10947-10966 None:intergenic 60.0%
CTGGCCTCTCCCAACAGTTG+TGG - tig0028593:11155-11174 None:intergenic 60.0%
GCGACATCGGAAGCTGGGTT+AGG - tig0028593:11219-11238 None:intergenic 60.0%
AACCCAGCTTCCGATGTCGC+CGG + tig0028593:11219-11238 Msa1438610:CDS 60.0%
!! GGCTGTTTCTCCGGCGACAT+CGG - tig0028593:11232-11251 None:intergenic 60.0%
!! AAGTGCGGCGGCTGTTTCTC+CGG - tig0028593:11241-11260 None:intergenic 60.0%
CGAAGAAGCAGCAAGTGCGG+CGG - tig0028593:11253-11272 None:intergenic 60.0%
GGGAGCCGCATGGTTAAGGA+GGG + tig0028593:12569-12588 Msa1438610:CDS 60.0%
GGAGCTATTGTGGGAGGACC+TGG + tig0028593:13455-13474 Msa1438610:CDS 60.0%
ACCGGCGGTTACTACGACGC+CGG + tig0028593:9963-9982 Msa1438610:CDS 65.0%
ACCGGCGTCGTAGTAACCGC+CGG - tig0028593:9967-9986 None:intergenic 65.0%
CTCCGGCGACATCGGAAGCT+GGG - tig0028593:11224-11243 None:intergenic 65.0%
TCTCCGGCGACATCGGAAGC+TGG - tig0028593:11225-11244 None:intergenic 65.0%
GGGGAGCCGCATGGTTAAGG+AGG + tig0028593:12568-12587 Msa1438610:CDS 65.0%
GGCTCGAACCCACGACCACA+AGG + tig0028593:12829-12848 Msa1438610:intron 65.0%
TCGTGGGTTCGAGCCCCACG+GGG - tig0028593:12824-12843 None:intergenic 70.0%
GTCGTGGGTTCGAGCCCCAC+GGG - tig0028593:12825-12844 None:intergenic 70.0%
GGTCGTGGGTTCGAGCCCCA+CGG - tig0028593:12826-12845 None:intergenic 70.0%
GTGGGTTCGAGCCCCACGGG+GGG - tig0028593:12822-12841 None:intergenic 75.0%
CGTGGGTTCGAGCCCCACGG+GGG - tig0028593:12823-12842 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028593 gene 9425 14028 9425 ID=Msa1438610;Name=Msa1438610
tig0028593 mRNA 9425 14028 9425 ID=Msa1438610-mRNA-1;Parent=Msa1438610;Name=Msa1438610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=322|1|1|1|1|1|4|442|491
tig0028593 exon 9425 10163 9425 ID=Msa1438610-mRNA-1:exon:11333;Parent=Msa1438610-mRNA-1
tig0028593 exon 11132 11431 11132 ID=Msa1438610-mRNA-1:exon:11334;Parent=Msa1438610-mRNA-1
tig0028593 exon 12555 12716 12555 ID=Msa1438610-mRNA-1:exon:11335;Parent=Msa1438610-mRNA-1
tig0028593 exon 12990 14028 12990 ID=Msa1438610-mRNA-1:exon:11336;Parent=Msa1438610-mRNA-1
tig0028593 five_prime_UTR 9425 9746 9425 ID=Msa1438610-mRNA-1:five_prime_utr;Parent=Msa1438610-mRNA-1
tig0028593 CDS 9747 10163 9747 ID=Msa1438610-mRNA-1:cds;Parent=Msa1438610-mRNA-1
tig0028593 CDS 11132 11431 11132 ID=Msa1438610-mRNA-1:cds;Parent=Msa1438610-mRNA-1
tig0028593 CDS 12555 12716 12555 ID=Msa1438610-mRNA-1:cds;Parent=Msa1438610-mRNA-1
tig0028593 CDS 12990 13586 12990 ID=Msa1438610-mRNA-1:cds;Parent=Msa1438610-mRNA-1
tig0028593 three_prime_UTR 13587 14028 13587 ID=Msa1438610-mRNA-1:three_prime_utr;Parent=Msa1438610-mRNA-1
Gene Sequence

>Msa1438610

ATGGCATTGGCCAGCAAATCGTTGCTGTTTGTTCTACTACTGGTGATGCTGATTGGAGGAAGAAGAAGTGTGAATGCACATGATTATGCGGAGGCATTATCGAAGGCAATCATGTTCTTTGAAGGACAACGTTCGGGGTTTTTACCAGAGGACCAGAGACAGAAGTGGCGTGGGAATTCGGGTTTGAGTGATGGGTGGACTTACAACACTGATCTTACCGGCGGTTACTACGACGCCGGTGATAACATCAAATTTGGGTTTCCGATGGCGTTTACGACAACAATGTTGTCGTGGAGTGTGATTGAGTTTGGTGAAAACATGCCTCCTAATGAACTCAGAAACGCTTTGGTCGCAATTCGTTGGAGTACTGATTATTTGCTTAAGACTGTTTCTCAGTCTAACCGCATTTTTGTTCAGGTGGGTGAACCAACCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACAAACAGGAAAGTGTATGCTGTTGATGCACCTAACCCAGCTTCCGATGTCGCCGGAGAAACAGCCGCCGCACTTGCTGCTTCTTCGATGGCATTCCGATCATCGGATCCCGGTTATTCTGAGACATTACTCAGAAATGCTGTTAAGGCATTTCAATATGCAGACAGTTACAGGGGCGCATACAGTGACAATGCTGATGTTAAGGATGGTGTCTGTCCTTATTATTGTGATTTTGATGGATACCAGGACGAATTGTTATGGGGAGCCGCATGGTTAAGGAGGGCTACTCAGGATGAAAATTTCCTAAACTACATTCAAAGCAATGGTAAAACACTCGGTGCTGAAGACAACATTAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTTGTCTCCAAGGAAGTCCTAGAAGGAAATGTTGAATCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCCTATGCACACTACTACCTGAAACATCAAGTTCACACATCGAGTACACTCCTGGTGGACTCATATACAGACCAGGAGGAAGCAACTTACAACATGCAACTTCAATTGCTTTCCTTGAGTTAGTCTACGCCAATTACTTATCTCGCACGTCACAAACCATCAATTGTGGCAATGTTTATGTTAGTGCACAAACACTTCGGGAGCGTGCCAAGAGACAAGTTGATTACATTTTAGGTGATAACCCCTTGGGTTTATCTTACATGGTTGGTTATGGTAACAATTATCCACAACGTATTCATCATCGTGGCTCATCTCTACCTTCTATTAAGGACCATCCTCAACAGATTGCATGCAAGGAAGGTTCAATATACTTCAATTCAACAAATCCTAACCCAAATGTTCTTGTAGGAGCTATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTATAGAAAATCTGAGCCAACCACATATATTAATGCGCCATTTGTTGGGGTTTTAGCATATTTTGTTGCTAATTAA
Protein sequence

>Msa1438610

MALASKSLLFVLLLVMLIGGRRSVNAHDYAEALSKAIMFFEGQRSGFLPEDQRQKWRGNSGLSDGWTYNTDLTGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGENMPPNELRNALVAIRWSTDYLLKTVSQSNRIFVQVGEPTSDHNCWERPEDMDTNRKVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQYADSYRGAYSDNADVKDGVCPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGNVESLESYKTSAESFLCTLLPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRERAKRQVDYILGDNPLGLSYMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADYRKSEPTTYINAPFVGVLAYFVAN*