AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369010 MtrunA17_Chr3g0145261 97.149 491 10 2 1 491 1 487 0.0 984
Msa1369010 MtrunA17_Chr8g0391391 61.966 468 172 4 27 491 29 493 0.0 601
Msa1369010 MtrunA17_Chr1g0195271 59.091 462 186 2 27 488 38 496 0.0 563
Msa1369010 MtrunA17_Chr3g0119821 57.602 467 194 3 23 488 30 493 0.0 559
Msa1369010 MtrunA17_Chr3g0080171 57.082 466 191 5 28 491 25 483 0.0 530
Msa1369010 MtrunA17_Chr4g0018361 54.970 493 204 7 6 488 5 489 0.0 523
Msa1369010 MtrunA17_Chr4g0018301 52.891 467 212 4 22 488 39 497 4.03e-180 514
Msa1369010 MtrunA17_Chr8g0388051 50.427 468 221 6 26 486 26 489 7.54e-163 475
Msa1369010 MtrunA17_Chr5g0397201 51.188 463 212 6 27 486 39 490 1.59e-162 469
Msa1369010 MtrunA17_Chr3g0119371 47.035 489 245 7 9 489 24 506 9.68e-154 448
Msa1369010 MtrunA17_Chr5g0439311 42.742 496 268 8 3 489 9 497 1.08e-147 432
Msa1369010 MtrunA17_Chr1g0164201 47.228 487 241 10 9 489 6 482 1.17e-142 418
Msa1369010 MtrunA17_Chr4g0038131 46.681 467 237 6 28 486 28 490 1.15e-141 421
Msa1369010 MtrunA17_Chr3g0086311 44.672 488 250 7 1 486 8 477 3.60e-139 409
Msa1369010 MtrunA17_Chr3g0142501 42.827 474 250 10 27 489 56 519 1.09e-120 363
Msa1369010 MtrunA17_Chr5g0397181 44.444 405 211 6 89 490 1 394 4.93e-120 357
Msa1369010 MtrunA17_Chr8g0372031 42.283 473 252 8 29 490 64 526 4.90e-116 352
Msa1369010 MtrunA17_Chr3g0136381 42.895 380 203 5 9 386 10 377 1.28e-109 332
Msa1369010 MtrunA17_Chr5g0444721 36.216 555 277 12 5 486 12 562 2.00e-105 325
Msa1369010 MtrunA17_Chr4g0018341 50.530 283 131 4 207 488 2 276 3.69e-105 315
Msa1369010 MtrunA17_Chr2g0291461 39.096 509 264 16 10 485 91 586 4.42e-89 285
Msa1369010 MtrunA17_Chr3g0120661 38.193 487 258 17 28 485 116 588 3.07e-86 277
Msa1369010 MtrunA17_Chr3g0126111 35.306 507 290 16 7 485 84 580 2.65e-85 274
Msa1369010 MtrunA17_Chr4g0018351 59.016 183 74 1 28 210 30 211 9.07e-65 208
Msa1369010 MtrunA17_Chr7g0269571 52.096 167 69 1 333 488 43 209 7.27e-57 189
Msa1369010 MtrunA17_Chr4g0022271 54.167 144 60 2 333 475 20 158 1.32e-45 157
Msa1369010 MtrunA17_Chr1g0164181 45.509 167 89 2 321 486 164 329 5.16e-41 149
Msa1369010 MtrunA17_Chr1g0164181 52.632 152 71 1 71 221 4 155 1.61e-39 145
Msa1369010 MtrunA17_Chr4g0072811 37.342 158 93 3 331 485 8 162 8.22e-26 104
Msa1369010 MtrunA17_Chr3g0136371 48.936 94 46 2 386 478 1 93 3.73e-22 91.3
Msa1369010 MtrunA17_Chr7g0269561 45.238 84 32 1 239 322 25 94 2.77e-18 80.9
Msa1369010 MtrunA17_Chr5g0397171 70.455 44 13 0 27 70 40 83 4.43e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369010 AT4G39010.1 74.468 470 119 1 23 491 24 493 0.0 744
Msa1369010 AT1G70710.1 60.081 491 191 3 3 491 1 488 0.0 615
Msa1369010 AT4G39000.1 57.819 486 204 1 7 491 4 489 0.0 591
Msa1369010 AT1G23210.1 57.230 491 205 3 3 491 1 488 0.0 590
Msa1369010 AT4G38990.2 57.377 488 199 4 10 491 8 492 0.0 578
Msa1369010 AT4G39010.2 72.253 364 100 1 23 385 24 387 0.0 572
Msa1369010 AT4G02290.1 58.874 462 187 2 27 488 51 509 0.0 571
Msa1369010 AT1G02800.1 59.660 471 185 3 18 488 33 498 0.0 565
Msa1369010 AT1G22880.1 55.144 486 210 4 7 491 3 481 0.0 516
Msa1369010 AT1G71380.1 54.545 484 211 5 8 490 5 480 6.16e-180 513
Msa1369010 AT4G02290.2 57.250 400 168 2 89 488 1 397 9.25e-167 477
Msa1369010 AT4G09740.1 49.691 485 228 6 12 491 4 477 5.25e-159 460
Msa1369010 AT4G11050.2 48.632 475 233 6 23 490 21 491 8.98e-159 462
Msa1369010 AT4G11050.1 48.632 475 233 6 23 490 21 491 7.35e-158 462
Msa1369010 AT4G11050.3 48.632 475 233 6 23 490 21 491 1.02e-157 462
Msa1369010 AT4G23560.1 48.454 485 237 5 9 491 4 477 6.52e-157 454
Msa1369010 AT1G64390.1 48.832 471 230 6 23 486 20 486 2.05e-156 458
Msa1369010 AT1G22880.2 55.446 404 172 4 89 491 1 397 1.05e-151 438
Msa1369010 AT2G32990.1 44.266 497 258 7 6 486 9 502 5.43e-148 434
Msa1369010 AT2G44540.1 46.362 481 245 7 11 486 16 488 3.95e-139 410
Msa1369010 AT2G44570.1 47.433 487 240 9 6 486 13 489 6.51e-139 409
Msa1369010 AT2G44550.1 46.998 483 240 9 9 486 16 487 8.64e-139 409
Msa1369010 AT2G44560.1 46.362 481 245 7 11 486 16 488 1.58e-136 403
Msa1369010 AT3G43860.2 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa1369010 AT3G43860.1 45.161 465 240 6 28 490 34 485 5.67e-135 399
Msa1369010 AT4G38990.1 55.618 356 129 3 10 364 8 335 2.50e-134 392
Msa1369010 AT1G48930.1 47.109 467 236 6 27 486 29 491 2.57e-132 397
Msa1369010 AT1G75680.1 45.852 458 231 8 29 479 58 505 7.03e-128 382
Msa1369010 AT1G19940.2 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa1369010 AT1G19940.1 42.918 466 249 8 25 483 45 500 8.00e-123 369
Msa1369010 AT1G22880.3 54.878 328 140 4 7 333 3 323 1.00e-110 332
Msa1369010 AT2G44570.2 43.890 401 210 8 6 401 13 403 7.07e-94 291
Msa1369010 AT1G19940.3 42.005 369 201 7 25 386 45 407 6.54e-88 276
Msa1369010 AT5G49720.1 37.718 517 276 16 3 485 79 583 7.75e-83 268
Msa1369010 AT1G65610.1 35.391 486 274 14 28 486 116 588 6.47e-81 263
Msa1369010 AT4G24260.1 36.327 490 268 16 28 486 108 584 1.20e-69 234
Msa1369010 AT4G24260.3 34.872 390 214 15 28 386 108 488 7.01e-41 153
Msa1369010 AT4G24260.2 36.562 320 168 12 28 319 108 420 1.60e-39 149
Msa1369010 AT3G42153.1 42.708 96 47 3 240 331 16 107 7.13e-15 71.2

Find 173 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTTCTTCTTAACTTAT+TGG 0.124007 tig0018691:+42713 Msa1369010:three_prime_UTR
GCCGGTGATAACATCAAATT+TGG 0.145877 tig0018691:+38768 Msa1369010:CDS
GAGATTCAACATTTCCTTCT+AGG 0.166797 tig0018691:-41745 Msa1369010:intergenic
ATTAACCTGTTAAGGATTAA+TGG 0.215794 tig0018691:-42339 Msa1369010:intergenic
CTGTTTGTGTCCATGTCTTC+TGG 0.223582 tig0018691:-39927 Msa1369010:intergenic
TTCAATATGCAGACAGTTAC+AGG 0.227377 tig0018691:+40093 Msa1369010:CDS
ATGTGTGAACTTGATGTTTC+AGG 0.237520 tig0018691:-41815 Msa1369010:intergenic
TTTGCTGGCCAATGCCATTT+TGG 0.261265 tig0018691:-38529 Msa1369010:intergenic
CATTGCTTTGAATGTAGTTT+AGG 0.285334 tig0018691:-41374 Msa1369010:intergenic
ATAAACATTGCCACAATTGA+TGG 0.289598 tig0018691:-41954 Msa1369010:intergenic
TGGAAGTATAAAATGGGTTT+GGG 0.290805 tig0018691:-38509 Msa1369010:intergenic
CTCATCTCTACCTTCTATTA+AGG 0.295970 tig0018691:+42105 Msa1369010:CDS
CGCACTTGCTGCTTCTTCAA+TGG 0.299034 tig0018691:+40010 Msa1369010:CDS
TAATCCCATTAATCCTTAAC+AGG 0.300223 tig0018691:+42334 Msa1369010:exon
TTGGAAGTATAAAATGGGTT+TGG 0.308683 tig0018691:-38510 Msa1369010:intergenic
TTAACCTGTTAAGGATTAAT+GGG 0.317615 tig0018691:-42338 Msa1369010:intergenic
ACAGAAGTGGCGTGGGAATT+CGG 0.323001 tig0018691:+38692 Msa1369010:CDS
TTCTTTGAAGGACAACGTTC+GGG 0.326700 tig0018691:+38648 Msa1369010:CDS
TCCTTGTAATTAACCTGTTA+AGG 0.327414 tig0018691:-42347 Msa1369010:intergenic
CAGAAGTGGCGTGGGAATTC+GGG 0.333466 tig0018691:+38693 Msa1369010:CDS
TATATTAATGCGCCATTTGT+TGG 0.343277 tig0018691:+42286 Msa1369010:CDS
TTATCTTACATGGTTGGTTA+TGG 0.346424 tig0018691:+42049 Msa1369010:CDS
AAAGCGTTTCTGAGTTCATT+AGG 0.346536 tig0018691:-38858 Msa1369010:intergenic
ATATTAATGCGCCATTTGTT+GGG 0.347405 tig0018691:+42287 Msa1369010:CDS
CCCCTTGGGTTTATCTTACA+TGG 0.349502 tig0018691:+42039 Msa1369010:CDS
CCTAACCCAAATGTTCTTGT+AGG 0.353533 tig0018691:+42184 Msa1369010:CDS
GAGTAATGTCTCAGAATAAC+CGG 0.358072 tig0018691:-40051 Msa1369010:intergenic
CCATCAAAATCACAATAATA+AGG 0.363676 tig0018691:-40158 Msa1369010:intergenic
ATAGCTCCTACAAGAACATT+TGG 0.366293 tig0018691:-42190 Msa1369010:intergenic
TCTCCGGCGACATCGGAAGC+TGG 0.368714 tig0018691:-39978 Msa1369010:intergenic
TGACGTGCGAGATAAGTAAT+TGG 0.370872 tig0018691:-41927 Msa1369010:intergenic
TCGTGGAGTGTGATTGAGTT+TGG 0.383558 tig0018691:+38822 Msa1369010:CDS
AACAAACAACAACGATTTGC+TGG 0.392456 tig0018691:-38544 Msa1369010:intergenic
TTGTACAGGACGAATTGTTA+TGG 0.396581 tig0018691:+41310 Msa1369010:intron
CCTACAAGAACATTTGGGTT+AGG 0.401102 tig0018691:-42184 Msa1369010:intergenic
TATGGGGAGCCGCATGGTTA+AGG 0.403036 tig0018691:+41328 Msa1369010:CDS
GTTCTTTGAAGGACAACGTT+CGG 0.406507 tig0018691:+38647 Msa1369010:CDS
CAGAAGACATGGACACAAAC+AGG 0.408396 tig0018691:+39928 Msa1369010:CDS
GTGGTTGTTTGTTAATTGTC+TGG 0.416256 tig0018691:+42650 Msa1369010:three_prime_UTR
TGTACAGGACGAATTGTTAT+GGG 0.417837 tig0018691:+41311 Msa1369010:intron
TCCCACGCCACTTCTGTCTC+TGG 0.419554 tig0018691:-38686 Msa1369010:intergenic
TGTTAGTGCACAAACACTTC+GGG 0.420044 tig0018691:+41976 Msa1369010:CDS
AAGTGCGGCGGCTGTTTCTC+CGG 0.426242 tig0018691:-39994 Msa1369010:intergenic
ATAGTAAAAGGTTTATATAC+AGG 0.427214 tig0018691:+42418 Msa1369010:three_prime_UTR
ACTTACAACACTGATCTTAC+CGG 0.429293 tig0018691:+38732 Msa1369010:CDS
GGGAATTCGGGTTTGAGTGA+TGG 0.430739 tig0018691:+38705 Msa1369010:CDS
GTCTGTCTCTTAAATAAACT+TGG 0.431349 tig0018691:+38362 Msa1369010:five_prime_UTR
CACTTCTGTCTCTGGTCCTC+TGG 0.435129 tig0018691:-38678 Msa1369010:intergenic
TATAAAATGGGTTTGGGGTA+AGG 0.435558 tig0018691:-38503 Msa1369010:intergenic
CTACTACTGGTGATGCTGAT+TGG 0.435595 tig0018691:+38567 Msa1369010:CDS
ACTTGCTTGTGTCTGTTGGC+TGG 0.436665 tig0018691:+42486 Msa1369010:three_prime_UTR
GTTGTTGTTTGTTCTACTAC+TGG 0.438724 tig0018691:+38554 Msa1369010:CDS
GGAATTCGGGTTTGAGTGAT+GGG 0.438904 tig0018691:+38706 Msa1369010:CDS
GCGACATCGGAAGCTGGGTT+AGG 0.440796 tig0018691:-39972 Msa1369010:intergenic
TTGTTATAGGAAGTCCTAGA+AGG 0.447365 tig0018691:+41731 Msa1369010:intron
CAACAGATTGCTTGCAAGGA+AGG 0.449168 tig0018691:+42136 Msa1369010:CDS
GGCTGTTTCTCCGGCGACAT+CGG 0.450417 tig0018691:-39985 Msa1369010:intergenic
ATGTGATGAATGAAATTAAT+GGG 0.453632 tig0018691:-38478 Msa1369010:intergenic
TTGGGTTTATCTTACATGGT+TGG 0.457905 tig0018691:+42043 Msa1369010:CDS
AATGTAATCAACTTGTCTCT+TGG 0.459625 tig0018691:-42005 Msa1369010:intergenic
CAGTGACAATGCTGATGTTA+AGG 0.460357 tig0018691:+40124 Msa1369010:CDS
ATTACTCAGAAATGCTGTTA+AGG 0.461567 tig0018691:+40067 Msa1369010:CDS
ACGCTTTGGTCGCAATTCGT+TGG 0.466420 tig0018691:+38874 Msa1369010:CDS
GAGAGAGAGATGGGATTTGG+AGG 0.469253 tig0018691:-38299 Msa1369010:intergenic
GGAGCTATTGTGGGAGGACC+TGG 0.473308 tig0018691:+42205 Msa1369010:CDS
ATGGTTAAGGAGGGCTACTC+AGG 0.477602 tig0018691:+41341 Msa1369010:CDS
ATTTGGAGGGAAGTAGTAGT+AGG 0.477831 tig0018691:-38285 Msa1369010:intergenic
TAGCTCCTACAAGAACATTT+GGG 0.479600 tig0018691:-42189 Msa1369010:intergenic
TTATACTTCCAAAATGGCAT+TGG 0.482936 tig0018691:+38521 Msa1369010:exon
TAATGAACTCAGAAACGCTT+TGG 0.483275 tig0018691:+38860 Msa1369010:CDS
AAGGCAATCATGTTCTTTGA+AGG 0.484150 tig0018691:+38636 Msa1369010:CDS
GAAGACAACATTAATGAGTT+CGG 0.484613 tig0018691:+41414 Msa1369010:CDS
TGAGGATGGTCCTTAATAGA+AGG 0.486620 tig0018691:-42115 Msa1369010:intergenic
TTCAATGGCATTCCGATCAT+CGG 0.487461 tig0018691:+40025 Msa1369010:CDS
AGAGACTTGCTTGTGTCTGT+TGG 0.487501 tig0018691:+42482 Msa1369010:three_prime_UTR
CAACAGTTGTGGTCTGAGGT+TGG 0.488075 tig0018691:-39897 Msa1369010:intergenic
CTCCGGCGACATCGGAAGCT+GGG 0.490926 tig0018691:-39977 Msa1369010:intergenic
TGAATGAAATTAATGGGTTG+TGG 0.494144 tig0018691:-38472 Msa1369010:intergenic
CCGGTGATAACATCAAATTT+GGG 0.494860 tig0018691:+38769 Msa1369010:CDS
ACAACATTAATGAGTTCGGT+TGG 0.496036 tig0018691:+41418 Msa1369010:CDS
TGTTGTAAGTTGCTTCCACC+TGG 0.503502 tig0018691:-41869 Msa1369010:intergenic
AACCTCAGACCACAACTGTT+GGG 0.503584 tig0018691:+39899 Msa1369010:CDS
CTCCCAACAGTTGTGGTCTG+AGG 0.506354 tig0018691:-39901 Msa1369010:intergenic
TGTTCTTGTAGGAGCTATTG+TGG 0.507021 tig0018691:+42195 Msa1369010:CDS
TCCTTAACAGGTTAATTACA+AGG 0.507651 tig0018691:+42346 Msa1369010:three_prime_UTR
TAATGGGTTGTGGGTAAAGT+GGG 0.510030 tig0018691:-38462 Msa1369010:intergenic
CCCAAATTTGATGTTATCAC+CGG 0.511014 tig0018691:-38769 Msa1369010:intergenic
TATGCTAAAACCCCAACAAA+TGG 0.511723 tig0018691:-42298 Msa1369010:intergenic
CAACCTCAGACCACAACTGT+TGG 0.514008 tig0018691:+39898 Msa1369010:CDS
GAATGAAATTAATGGGTTGT+GGG 0.515419 tig0018691:-38471 Msa1369010:intergenic
CCTCAACGTTCTTGTCTCCA+AGG 0.518942 tig0018691:+41458 Msa1369010:CDS
TTAATGGGTTGTGGGTAAAG+TGG 0.519196 tig0018691:-38463 Msa1369010:intergenic
AATGTGATGAATGAAATTAA+TGG 0.521183 tig0018691:-38479 Msa1369010:intergenic
ATGATGTTTATGTGGATGAC+AGG 0.521412 tig0018691:+42233 Msa1369010:CDS
CAACATTAATGAGTTCGGTT+GGG 0.522809 tig0018691:+41419 Msa1369010:CDS
CTGGCCTCTCCCAACAGTTG+TGG 0.526446 tig0018691:-39908 Msa1369010:intergenic
ATGTTAGTGCACAAACACTT+CGG 0.530340 tig0018691:+41975 Msa1369010:CDS
TCCTCAACAGATTGCTTGCA+AGG 0.531094 tig0018691:+42132 Msa1369010:CDS
AAATGGCGCATTAATATATG+TGG 0.534377 tig0018691:-42281 Msa1369010:intergenic
CTAAACTACATTCAAAGCAA+TGG 0.537231 tig0018691:+41375 Msa1369010:CDS
GGGGAGCCGCATGGTTAAGG+AGG 0.537973 tig0018691:+41331 Msa1369010:CDS
CATCAAATTTGGGTTTCCGA+TGG 0.547688 tig0018691:+38779 Msa1369010:CDS
AGAGAGAGATGGGATTTGGA+GGG 0.549561 tig0018691:-38298 Msa1369010:intergenic
GACCAGAGACAGAAGTGGCG+TGG 0.550720 tig0018691:+38684 Msa1369010:CDS
AATAACCGGGATCCGATGAT+CGG 0.551697 tig0018691:-40037 Msa1369010:intergenic
AAAAGGTTTATATACAGGAA+AGG 0.553561 tig0018691:+42423 Msa1369010:three_prime_UTR
GTTCTTGTAGGAGCTATTGT+GGG 0.555313 tig0018691:+42196 Msa1369010:CDS
TCCTTGCAAGCAATCTGTTG+AGG 0.555459 tig0018691:-42133 Msa1369010:intergenic
CCGACAGATAAACGAGGGAG+AGG 0.556209 tig0018691:-38244 Msa1369010:intergenic
TGTCTGTTGGCTGGATACAT+AGG 0.556277 tig0018691:+42495 Msa1369010:three_prime_UTR
TAGAGATGAGATGGTGTCAC+GGG 0.556783 tig0018691:-38399 Msa1369010:intergenic
TCAATATGCAGACAGTTACA+GGG 0.557642 tig0018691:+40094 Msa1369010:CDS
TCACACATCGAGTACACTCC+TGG 0.560468 tig0018691:+41830 Msa1369010:CDS
TTGGGAGAGGCCAGAAGACA+TGG 0.561765 tig0018691:+39917 Msa1369010:CDS
GGTTGGGACAACAAGCATGC+TGG 0.562101 tig0018691:+41435 Msa1369010:CDS
ATTGTTGTCGTAAACGCCAT+CGG 0.566271 tig0018691:-38795 Msa1369010:intergenic
CTAACGCATTAGAGATGAGA+TGG 0.567462 tig0018691:-38408 Msa1369010:intergenic
ACATAAACATCATCTTCTCC+AGG 0.567710 tig0018691:-42223 Msa1369010:intergenic
TATTAATGCGCCATTTGTTG+GGG 0.570106 tig0018691:+42288 Msa1369010:CDS
ACCAGAGACAGAAGTGGCGT+GGG 0.571423 tig0018691:+38685 Msa1369010:CDS
CTACTGGTGATGCTGATTGG+AGG 0.572389 tig0018691:+38570 Msa1369010:CDS
ATTCGGGTTTGAGTGATGGG+TGG 0.574191 tig0018691:+38709 Msa1369010:CDS
CAAAGCAATGGTAAAACACT+CGG 0.575426 tig0018691:+41387 Msa1369010:CDS
ACCGGCGGTTACTACGACGC+CGG 0.576662 tig0018691:+38750 Msa1369010:CDS
GGAAGTATAAAATGGGTTTG+GGG 0.578043 tig0018691:-38508 Msa1369010:intergenic
AACCCAGCTTCCGATGTCGC+CGG 0.578286 tig0018691:+39975 Msa1369010:CDS
GGCGCATTAATATATGTGGT+TGG 0.580585 tig0018691:-42277 Msa1369010:intergenic
CCTCTCCCTCGTTTATCTGT+CGG 0.582430 tig0018691:+38244 Msa1369010:five_prime_UTR
CTTGTAGGAGCTATTGTGGG+AGG 0.586975 tig0018691:+42199 Msa1369010:CDS
TGGAGAAGATGATGTTTATG+TGG 0.587154 tig0018691:+42225 Msa1369010:CDS
CATTGAAGAAGCAGCAAGTG+CGG 0.587315 tig0018691:-40009 Msa1369010:intergenic
TGCAAGCAATCTGTTGAGGA+TGG 0.591228 tig0018691:-42129 Msa1369010:intergenic
GCATTCCGATCATCGGATCC+CGG 0.593312 tig0018691:+40032 Msa1369010:CDS
AATTGTTATGGGGAGCCGCA+TGG 0.602591 tig0018691:+41322 Msa1369010:CDS
TCATCTTAAGAAAATCAAGA+AGG 0.603437 tig0018691:+42458 Msa1369010:three_prime_UTR
GCATAGGAAGCTCTCTGCTG+AGG 0.604029 tig0018691:-41783 Msa1369010:intergenic
GGTCTGTATATGAGTCCACC+AGG 0.612971 tig0018691:-41848 Msa1369010:intergenic
TTTCAGGTAGTAGTGTGCAT+AGG 0.626912 tig0018691:-41799 Msa1369010:intergenic
TGAAGAAGCAGCAAGTGCGG+CGG 0.632124 tig0018691:-40006 Msa1369010:intergenic
ATTTAACAAGAATAGAGTGA+GGG 0.633690 tig0018691:+42620 Msa1369010:three_prime_UTR
GCGTTTCTGAGTTCATTAGG+AGG 0.634386 tig0018691:-38855 Msa1369010:intergenic
AACCATGTAAGATAAACCCA+AGG 0.635575 tig0018691:-42041 Msa1369010:intergenic
AATTGGCGTAGACTAACTCA+AGG 0.637923 tig0018691:-41910 Msa1369010:intergenic
TTAGAGATGAGATGGTGTCA+CGG 0.639592 tig0018691:-38400 Msa1369010:intergenic
CAGACCACAACTGTTGGGAG+AGG 0.640454 tig0018691:+39904 Msa1369010:CDS
CAGAGGACCAGAGACAGAAG+TGG 0.641335 tig0018691:+38679 Msa1369010:CDS
ACCATGTAAGATAAACCCAA+GGG 0.641726 tig0018691:-42040 Msa1369010:intergenic
ACGTCACAAACCATCAATTG+TGG 0.642957 tig0018691:+41944 Msa1369010:CDS
TACAACACTGATCTTACCGG+CGG 0.646779 tig0018691:+38735 Msa1369010:CDS
TTACGACAACAATGTTGTCG+TGG 0.652135 tig0018691:+38805 Msa1369010:CDS
GACAATGCTGATGTTAAGGA+TGG 0.656075 tig0018691:+40128 Msa1369010:CDS
AATTTAACAAGAATAGAGTG+AGG 0.657793 tig0018691:+42619 Msa1369010:three_prime_UTR
ACCGGCGTCGTAGTAACCGC+CGG 0.660182 tig0018691:-38751 Msa1369010:intergenic
ATAGAGTGAGGGTGTCATTG+TGG 0.661242 tig0018691:+42631 Msa1369010:three_prime_UTR
AGTAATGTCTCAGAATAACC+GGG 0.665758 tig0018691:-40050 Msa1369010:intergenic
GTACAGGACGAATTGTTATG+GGG 0.670217 tig0018691:+41312 Msa1369010:intron
TTATGCGGAGGCATTATCGA+AGG 0.671544 tig0018691:+38617 Msa1369010:CDS
CACATCGAGTACACTCCTGG+TGG 0.672404 tig0018691:+41833 Msa1369010:CDS
TCTTTGAAGGACAACGTTCG+GGG 0.677942 tig0018691:+38649 Msa1369010:CDS
GGTGGACTCATATACAGACC+AGG 0.680214 tig0018691:+41851 Msa1369010:CDS
GGGAGCCGCATGGTTAAGGA+GGG 0.683185 tig0018691:+41332 Msa1369010:CDS
CAATATGCAGACAGTTACAG+GGG 0.695263 tig0018691:+40095 Msa1369010:CDS
CCACGATGATGAATACGTTG+TGG 0.695422 tig0018691:-42082 Msa1369010:intergenic
TGTGAATGCACATGATTATG+CGG 0.701086 tig0018691:+38602 Msa1369010:CDS
GGACTCATATACAGACCAGG+TGG 0.718917 tig0018691:+41854 Msa1369010:CDS
AAGCGCCGACAGATAAACGA+GGG 0.724034 tig0018691:-38249 Msa1369010:intergenic
CCTTGGAGACAAGAACGTTG+AGG 0.724038 tig0018691:-41458 Msa1369010:intergenic
CCACAACGTATTCATCATCG+TGG 0.724350 tig0018691:+42082 Msa1369010:CDS
TGATGTTTATGTGGATGACA+GGG 0.726322 tig0018691:+42234 Msa1369010:CDS
CCATGTAAGATAAACCCAAG+GGG 0.735452 tig0018691:-42039 Msa1369010:intergenic
AGTAGCCCTCCTTAACCATG+CGG 0.745611 tig0018691:-41337 Msa1369010:intergenic
GAATGCACATGATTATGCGG+AGG 0.747781 tig0018691:+38605 Msa1369010:CDS
AAAGCGCCGACAGATAAACG+AGG 0.756166 tig0018691:-38250 Msa1369000:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAATAA+AGG - tig0018691:39070-39089 Msa1369010:intergenic 0.0%
!!! TAAATTTCTTTTTTGATTAA+GGG - tig0018691:39137-39156 Msa1369010:intergenic 10.0%
!! TTAATCAAAAAAGAAATTTA+CGG + tig0018691:39137-39156 Msa1369010:intron 10.0%
!! AATTTACTTATAAAAAGAAA+TGG - tig0018691:39295-39314 Msa1369010:intergenic 10.0%
!! ATTCTCATTAATTTAAAAAT+TGG - tig0018691:39740-39759 Msa1369010:intergenic 10.0%
!! ATATTAGATATATCAAAAAA+TGG + tig0018691:39789-39808 Msa1369010:intron 10.0%
!!! TTCTAATAATAAATACTTTT+TGG + tig0018691:40549-40568 Msa1369010:intron 10.0%
!! ATTAGTTAATTAATTAAAAG+TGG + tig0018691:40977-40996 Msa1369010:intron 10.0%
!! AAATAAATAAATAAAGGAAG+AGG - tig0018691:39064-39083 Msa1369010:intergenic 15.0%
!!! GTAAATTTCTTTTTTGATTA+AGG - tig0018691:39138-39157 Msa1369010:intergenic 15.0%
!!! AATTTGCTTGTATAAAAAAA+CGG + tig0018691:39372-39391 Msa1369010:intron 15.0%
!! TCATTAATTTAAAAATTGGA+TGG - tig0018691:39736-39755 Msa1369010:intergenic 15.0%
!! TGTCATGTAATTTAATAATT+AGG - tig0018691:39849-39868 Msa1369010:intergenic 15.0%
!!! GAATTTAGAATTATAAAAAC+AGG + tig0018691:40588-40607 Msa1369010:intron 15.0%
!! ATGTGATGAATGAAATTAAT+GGG - tig0018691:38481-38500 Msa1369010:intergenic 20.0%
!! AATGTGATGAATGAAATTAA+TGG - tig0018691:38482-38501 Msa1369010:intergenic 20.0%
!! TCCTAAATCAATTTATTGAA+TGG + tig0018691:39163-39182 Msa1369010:intron 20.0%
!!! TCCATTCAATAAATTGATTT+AGG - tig0018691:39167-39186 Msa1369010:intergenic 20.0%
!! CAAAAAAAAAAAACTGAAAG+CGG - tig0018691:39244-39263 Msa1369010:intergenic 20.0%
!! TTGTTCACATTTAGAAATAT+AGG + tig0018691:39261-39280 Msa1369010:intron 20.0%
!! TACTTATAAAAAGAAATGGA+AGG - tig0018691:39291-39310 Msa1369010:intergenic 20.0%
!!! TCAAAATCATCATTTTTCTT+AGG - tig0018691:39440-39459 Msa1369010:intergenic 20.0%
!!! ATTGCATTTTTCCTTTTTAT+AGG + tig0018691:40231-40250 Msa1369010:intron 20.0%
!! AAAATTCAAAACGATAACAT+CGG - tig0018691:40260-40279 Msa1369010:intergenic 20.0%
!!! ACATTGATAATGATAGTATA+TGG + tig0018691:40291-40310 Msa1369010:intron 20.0%
!! TGTATTCATTTCATATCATA+TGG + tig0018691:40478-40497 Msa1369010:intron 20.0%
!! GTATTCATTTCATATCATAT+GGG + tig0018691:40479-40498 Msa1369010:intron 20.0%
!! TATTAGAAATTGAGTGTAAA+AGG - tig0018691:40537-40556 Msa1369010:intergenic 20.0%
!! TAAGGTTTGAAAAATATAAG+CGG + tig0018691:40663-40682 Msa1369010:intron 20.0%
!! TAAATTGAATAGTGCATATT+TGG - tig0018691:40813-40832 Msa1369010:intergenic 20.0%
!! AAATTTGAATTGAATAGAGA+TGG - tig0018691:41486-41505 Msa1369010:intergenic 20.0%
!!! AGTAAATGAATTGTTGTTAT+AGG + tig0018691:41718-41737 Msa1369010:intron 20.0%
!! ATAGTAAAAGGTTTATATAC+AGG + tig0018691:42418-42437 Msa1369010:three_prime_UTR 20.0%
!!! CCATTTTGGAAGTATAAAAT+GGG - tig0018691:38518-38537 Msa1369010:intergenic 25.0%
! AAATAAATAAAGGAAGAGGA+AGG - tig0018691:39060-39079 Msa1369010:intergenic 25.0%
! GATCGTAAATGTAAATAAAC+TGG - tig0018691:39222-39241 Msa1369010:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG + tig0018691:39329-39348 Msa1369010:intron 25.0%
! GTAGTGATGACAAAAATAAA+GGG - tig0018691:39468-39487 Msa1369010:intergenic 25.0%
! TGTAGTGATGACAAAAATAA+AGG - tig0018691:39469-39488 Msa1369010:intergenic 25.0%
!!! TATTTTTGTCATCACTACAA+AGG + tig0018691:39470-39489 Msa1369010:intron 25.0%
! GTATACAGTTATAATCGAAA+CGG - tig0018691:39680-39699 Msa1369010:intergenic 25.0%
!!! AAATGGTTGATGACAAAATT+TGG + tig0018691:39806-39825 Msa1369010:intron 25.0%
! CCATCAAAATCACAATAATA+AGG - tig0018691:40161-40180 Msa1369010:intergenic 25.0%
!! CCTTATTATTGTGATTTTGA+TGG + tig0018691:40158-40177 Msa1369010:CDS 25.0%
! CAATCAACATCGAATTATAT+AGG + tig0018691:41115-41134 Msa1369010:intron 25.0%
! TTATTACTAGTACTATGTGA+AGG + tig0018691:41177-41196 Msa1369010:intron 25.0%
! TATTACTAGTACTATGTGAA+GGG + tig0018691:41178-41197 Msa1369010:intron 25.0%
!! CTATTTGCTACACTATTAAT+TGG + tig0018691:41272-41291 Msa1369010:intron 25.0%
!!! AGACAAGTTGATTACATTTT+AGG + tig0018691:42010-42029 Msa1369010:CDS 25.0%
! TTAACCTGTTAAGGATTAAT+GGG - tig0018691:42341-42360 Msa1369010:intergenic 25.0%
! ATTAACCTGTTAAGGATTAA+TGG - tig0018691:42342-42361 Msa1369010:intergenic 25.0%
!! CTTCTTTTGTAGATAGTAAA+AGG + tig0018691:42406-42425 Msa1369010:three_prime_UTR 25.0%
! AAAAGGTTTATATACAGGAA+AGG + tig0018691:42423-42442 Msa1369010:three_prime_UTR 25.0%
! TCATCTTAAGAAAATCAAGA+AGG + tig0018691:42458-42477 Msa1369010:three_prime_UTR 25.0%
! AATTTAACAAGAATAGAGTG+AGG + tig0018691:42619-42638 Msa1369010:three_prime_UTR 25.0%
! ATTTAACAAGAATAGAGTGA+GGG + tig0018691:42620-42639 Msa1369010:three_prime_UTR 25.0%
! CTAACTTCTTCTTAACTTAT+TGG + tig0018691:42713-42732 Msa1369010:three_prime_UTR 25.0%
GTCTGTCTCTTAAATAAACT+TGG + tig0018691:38362-38381 Msa1369010:five_prime_UTR 30.0%
!! GAATGAAATTAATGGGTTGT+GGG - tig0018691:38474-38493 Msa1369010:intergenic 30.0%
!! TGAATGAAATTAATGGGTTG+TGG - tig0018691:38475-38494 Msa1369010:intergenic 30.0%
! TGGAAGTATAAAATGGGTTT+GGG - tig0018691:38512-38531 Msa1369010:intergenic 30.0%
! TTGGAAGTATAAAATGGGTT+TGG - tig0018691:38513-38532 Msa1369010:intergenic 30.0%
! CCCATTTTATACTTCCAAAA+TGG + tig0018691:38515-38534 Msa1369010:exon 30.0%
!! GCCATTTTGGAAGTATAAAA+TGG - tig0018691:38519-38538 Msa1369010:intergenic 30.0%
TTATACTTCCAAAATGGCAT+TGG + tig0018691:38521-38540 Msa1369010:exon 30.0%
ATTGTACCTGAACAAAAATG+CGG - tig0018691:38938-38957 Msa1369010:intergenic 30.0%
ACAATTTACTACTGAATCGT+TGG + tig0018691:38953-38972 Msa1369010:intron 30.0%
CAATTTACTACTGAATCGTT+GGG + tig0018691:38954-38973 Msa1369010:intron 30.0%
TTGCTTGTATAAAAAAACGG+AGG + tig0018691:39375-39394 Msa1369010:intron 30.0%
TGCTTGTATAAAAAAACGGA+GGG + tig0018691:39376-39395 Msa1369010:intron 30.0%
!! AAATTTTCCGTGTCATTATG+TGG + tig0018691:39552-39571 Msa1369010:intron 30.0%
AGTTATAATCGAAACGGAAA+TGG - tig0018691:39674-39693 Msa1369010:intergenic 30.0%
ACATTGTACATGCTACTATT+AGG + tig0018691:39866-39885 Msa1369010:intron 30.0%
ATTACTCAGAAATGCTGTTA+AGG + tig0018691:40067-40086 Msa1369010:CDS 30.0%
AACTATACTACTTACTAACC+TGG - tig0018691:40187-40206 Msa1369010:intergenic 30.0%
AACATCGGATACCTATAAAA+AGG - tig0018691:40245-40264 Msa1369010:intergenic 30.0%
! ATTTCATATCATATGGGCTA+TGG + tig0018691:40485-40504 Msa1369010:intron 30.0%
TAGAAATTGAGTGTAAAAGG+TGG - tig0018691:40534-40553 Msa1369010:intergenic 30.0%
! ACAAGTGATTTTGCGAAATA+AGG + tig0018691:40645-40664 Msa1369010:intron 30.0%
GTTTGAAAAATATAAGCGGT+GGG + tig0018691:40667-40686 Msa1369010:intron 30.0%
!!! TTTGGAATTTTTTGCCAGTT+AGG + tig0018691:40690-40709 Msa1369010:intron 30.0%
ACAACAAAGCTTCTGTAAAA+CGG - tig0018691:40749-40768 Msa1369010:intergenic 30.0%
! CTCTAACTGACAATTTGTTT+AGG + tig0018691:40943-40962 Msa1369010:intron 30.0%
! AATTGCATCTCGAGAATTTT+TGG + tig0018691:41054-41073 Msa1369010:intron 30.0%
ATTACTAGTACTATGTGAAG+GGG + tig0018691:41179-41198 Msa1369010:intron 30.0%
TGCTACACTATTAATTGGTT+TGG + tig0018691:41277-41296 Msa1369010:intron 30.0%
TTGGATACATTACATTGTAC+AGG + tig0018691:41296-41315 Msa1369010:intron 30.0%
! CATTGCTTTGAATGTAGTTT+AGG - tig0018691:41377-41396 Msa1369010:intergenic 30.0%
CTAAACTACATTCAAAGCAA+TGG + tig0018691:41375-41394 Msa1369010:CDS 30.0%
GAAGACAACATTAATGAGTT+CGG + tig0018691:41414-41433 Msa1369010:CDS 30.0%
ATAAACATTGCCACAATTGA+TGG - tig0018691:41957-41976 Msa1369010:intergenic 30.0%
AATGTAATCAACTTGTCTCT+TGG - tig0018691:42008-42027 Msa1369010:intergenic 30.0%
! TTATCTTACATGGTTGGTTA+TGG + tig0018691:42049-42068 Msa1369010:CDS 30.0%
AAATGGCGCATTAATATATG+TGG - tig0018691:42284-42303 Msa1369010:intergenic 30.0%
TATATTAATGCGCCATTTGT+TGG + tig0018691:42286-42305 Msa1369010:CDS 30.0%
ATATTAATGCGCCATTTGTT+GGG + tig0018691:42287-42306 Msa1369010:CDS 30.0%
TAATCCCATTAATCCTTAAC+AGG + tig0018691:42334-42353 Msa1369010:exon 30.0%
TCCTTAACAGGTTAATTACA+AGG + tig0018691:42346-42365 Msa1369010:three_prime_UTR 30.0%
TCCTTGTAATTAACCTGTTA+AGG - tig0018691:42350-42369 Msa1369010:intergenic 30.0%
! ATATGTGACTTTTCCATTGA+AGG + tig0018691:42546-42565 Msa1369010:three_prime_UTR 30.0%
! TATGTGACTTTTCCATTGAA+GGG + tig0018691:42547-42566 Msa1369010:three_prime_UTR 30.0%
AATCAAAACAAAAAGCTTCG+TGG - tig0018691:42683-42702 Msa1369010:intergenic 30.0%
AAAAAGAGAGAGAGAGAGAT+GGG - tig0018691:38311-38330 Msa1369010:intergenic 35.0%
AAAAAAGAGAGAGAGAGAGA+TGG - tig0018691:38312-38331 Msa1369010:intergenic 35.0%
! TATAAAATGGGTTTGGGGTA+AGG - tig0018691:38506-38525 Msa1369010:intergenic 35.0%
! GGAAGTATAAAATGGGTTTG+GGG - tig0018691:38511-38530 Msa1369010:intergenic 35.0%
AACAAACAACAACGATTTGC+TGG - tig0018691:38547-38566 Msa1369010:intergenic 35.0%
!! GTTGTTGTTTGTTCTACTAC+TGG + tig0018691:38554-38573 Msa1369010:CDS 35.0%
TGTGAATGCACATGATTATG+CGG + tig0018691:38602-38621 Msa1369010:CDS 35.0%
AAGGCAATCATGTTCTTTGA+AGG + tig0018691:38636-38655 Msa1369010:CDS 35.0%
ACTTACAACACTGATCTTAC+CGG + tig0018691:38732-38751 Msa1369010:CDS 35.0%
CCCAAATTTGATGTTATCAC+CGG - tig0018691:38772-38791 Msa1369010:intergenic 35.0%
CCGGTGATAACATCAAATTT+GGG + tig0018691:38769-38788 Msa1369010:CDS 35.0%
! AAAGCGTTTCTGAGTTCATT+AGG - tig0018691:38861-38880 Msa1369010:intergenic 35.0%
TAATGAACTCAGAAACGCTT+TGG + tig0018691:38860-38879 Msa1369010:CDS 35.0%
TTCTTAGGAACGACTAAACA+TGG - tig0018691:39425-39444 Msa1369010:intergenic 35.0%
TTGAAGTCCGTGAATTTCAT+CGG + tig0018691:39599-39618 Msa1369010:intron 35.0%
TTGTACATGCTACTATTAGG+TGG + tig0018691:39869-39888 Msa1369010:intron 35.0%
TGTACATGCTACTATTAGGT+GGG + tig0018691:39870-39889 Msa1369010:intron 35.0%
AGTAATGTCTCAGAATAACC+GGG - tig0018691:40053-40072 Msa1369010:intergenic 35.0%
GAGTAATGTCTCAGAATAAC+CGG - tig0018691:40054-40073 Msa1369010:intergenic 35.0%
TTCAATATGCAGACAGTTAC+AGG + tig0018691:40093-40112 Msa1369010:CDS 35.0%
TCAATATGCAGACAGTTACA+GGG + tig0018691:40094-40113 Msa1369010:CDS 35.0%
!! TTGTGATTTTGATGGATACC+AGG + tig0018691:40166-40185 Msa1369010:CDS 35.0%
AAATCCGAAGCAAACTATTG+TGG + tig0018691:40406-40425 Msa1369010:intron 35.0%
!! TTTGCCACAATAGTTTGCTT+CGG - tig0018691:40413-40432 Msa1369010:intergenic 35.0%
GGTTTGAAAAATATAAGCGG+TGG + tig0018691:40666-40685 Msa1369010:intron 35.0%
! AAAAATATAAGCGGTGGGTT+TGG + tig0018691:40672-40691 Msa1369010:intron 35.0%
TAACACTTCCATTATGTGTC+GGG - tig0018691:41030-41049 Msa1369010:intergenic 35.0%
GTAACACTTCCATTATGTGT+CGG - tig0018691:41031-41050 Msa1369010:intergenic 35.0%
AAGGGGTAATATTTGTCTGA+GGG + tig0018691:41196-41215 Msa1369010:intron 35.0%
TTGTACAGGACGAATTGTTA+TGG + tig0018691:41310-41329 Msa1369010:intron 35.0%
TGTACAGGACGAATTGTTAT+GGG + tig0018691:41311-41330 Msa1369010:intron 35.0%
CAAAGCAATGGTAAAACACT+CGG + tig0018691:41387-41406 Msa1369010:CDS 35.0%
ACAACATTAATGAGTTCGGT+TGG + tig0018691:41418-41437 Msa1369010:CDS 35.0%
CAACATTAATGAGTTCGGTT+GGG + tig0018691:41419-41438 Msa1369010:CDS 35.0%
ATTGAATAGAGATGGAACCT+TGG - tig0018691:41478-41497 Msa1369010:intergenic 35.0%
TTGTTATAGGAAGTCCTAGA+AGG + tig0018691:41731-41750 Msa1369010:intron 35.0%
GAGATTCAACATTTCCTTCT+AGG - tig0018691:41748-41767 Msa1369010:intergenic 35.0%
ATGTGTGAACTTGATGTTTC+AGG - tig0018691:41818-41837 Msa1369010:intergenic 35.0%
ATGTTAGTGCACAAACACTT+CGG + tig0018691:41975-41994 Msa1369010:CDS 35.0%
!! ATTTTAGGTGATAACCCCTT+GGG + tig0018691:42025-42044 Msa1369010:CDS 35.0%
ACCATGTAAGATAAACCCAA+GGG - tig0018691:42043-42062 Msa1369010:intergenic 35.0%
AACCATGTAAGATAAACCCA+AGG - tig0018691:42044-42063 Msa1369010:intergenic 35.0%
TTGGGTTTATCTTACATGGT+TGG + tig0018691:42043-42062 Msa1369010:CDS 35.0%
CTCATCTCTACCTTCTATTA+AGG + tig0018691:42105-42124 Msa1369010:CDS 35.0%
TAGCTCCTACAAGAACATTT+GGG - tig0018691:42192-42211 Msa1369010:intergenic 35.0%
ATAGCTCCTACAAGAACATT+TGG - tig0018691:42193-42212 Msa1369010:intergenic 35.0%
ACATAAACATCATCTTCTCC+AGG - tig0018691:42226-42245 Msa1369010:intergenic 35.0%
TGGAGAAGATGATGTTTATG+TGG + tig0018691:42225-42244 Msa1369010:CDS 35.0%
ATGATGTTTATGTGGATGAC+AGG + tig0018691:42233-42252 Msa1369010:CDS 35.0%
TGATGTTTATGTGGATGACA+GGG + tig0018691:42234-42253 Msa1369010:CDS 35.0%
! TATTAATGCGCCATTTGTTG+GGG + tig0018691:42288-42307 Msa1369010:CDS 35.0%
TATGCTAAAACCCCAACAAA+TGG - tig0018691:42301-42320 Msa1369010:intergenic 35.0%
! GTGGTTGTTTGTTAATTGTC+TGG + tig0018691:42650-42669 Msa1369010:three_prime_UTR 35.0%
ATTTGGAGGGAAGTAGTAGT+AGG - tig0018691:38288-38307 Msa1369010:intergenic 40.0%
! TTAGAGATGAGATGGTGTCA+CGG - tig0018691:38403-38422 Msa1369010:intergenic 40.0%
CTAACGCATTAGAGATGAGA+TGG - tig0018691:38411-38430 Msa1369010:intergenic 40.0%
!! TAATGGGTTGTGGGTAAAGT+GGG - tig0018691:38465-38484 Msa1369010:intergenic 40.0%
!! TTAATGGGTTGTGGGTAAAG+TGG - tig0018691:38466-38485 Msa1369010:intergenic 40.0%
! GTTCTTTGAAGGACAACGTT+CGG + tig0018691:38647-38666 Msa1369010:CDS 40.0%
! TTCTTTGAAGGACAACGTTC+GGG + tig0018691:38648-38667 Msa1369010:CDS 40.0%
GCCGGTGATAACATCAAATT+TGG + tig0018691:38768-38787 Msa1369010:CDS 40.0%
! CATCAAATTTGGGTTTCCGA+TGG + tig0018691:38779-38798 Msa1369010:CDS 40.0%
ATTGTTGTCGTAAACGCCAT+CGG - tig0018691:38798-38817 Msa1369010:intergenic 40.0%
TTACGACAACAATGTTGTCG+TGG + tig0018691:38805-38824 Msa1369010:CDS 40.0%
! GTCTAACCGCATTTTTGTTC+AGG + tig0018691:38929-38948 Msa1369010:CDS 40.0%
ATAAACTGGCACAGCTATCA+AGG - tig0018691:39208-39227 Msa1369010:intergenic 40.0%
GATGAAATTCACGGACTTCA+AGG - tig0018691:39600-39619 Msa1369010:intergenic 40.0%
TGCAAAGCCGATGAAATTCA+CGG - tig0018691:39609-39628 Msa1369010:intergenic 40.0%
ATGAGTAACACTGCCATGTT+TGG - tig0018691:39710-39729 Msa1369010:intergenic 40.0%
TTCAATGGCATTCCGATCAT+CGG + tig0018691:40025-40044 Msa1369010:CDS 40.0%
CAATATGCAGACAGTTACAG+GGG + tig0018691:40095-40114 Msa1369010:CDS 40.0%
CAGTGACAATGCTGATGTTA+AGG + tig0018691:40124-40143 Msa1369010:CDS 40.0%
GACAATGCTGATGTTAAGGA+TGG + tig0018691:40128-40147 Msa1369010:CDS 40.0%
! TAGAGTGTTTGATCACGTGA+AGG - tig0018691:40334-40353 Msa1369010:intergenic 40.0%
! ATATCATATGGGCTATGGCA+TGG + tig0018691:40490-40509 Msa1369010:intron 40.0%
! TATCATATGGGCTATGGCAT+GGG + tig0018691:40491-40510 Msa1369010:intron 40.0%
TGAGTGTAAAAGGTGGATGT+GGG - tig0018691:40527-40546 Msa1369010:intergenic 40.0%
TTGAGTGTAAAAGGTGGATG+TGG - tig0018691:40528-40547 Msa1369010:intergenic 40.0%
! TTTTGCCAGTTAGGACATGT+CGG + tig0018691:40699-40718 Msa1369010:intron 40.0%
GAAGGGGTAATATTTGTCTG+AGG + tig0018691:41195-41214 Msa1369010:intron 40.0%
AGGGCAATTCGTGTATTTAG+TGG + tig0018691:41215-41234 Msa1369010:intron 40.0%
GTACAGGACGAATTGTTATG+GGG + tig0018691:41312-41331 Msa1369010:intron 40.0%
! TTTCAGGTAGTAGTGTGCAT+AGG - tig0018691:41802-41821 Msa1369010:intergenic 40.0%
AATTGGCGTAGACTAACTCA+AGG - tig0018691:41913-41932 Msa1369010:intergenic 40.0%
TGACGTGCGAGATAAGTAAT+TGG - tig0018691:41930-41949 Msa1369010:intergenic 40.0%
ACGTCACAAACCATCAATTG+TGG + tig0018691:41944-41963 Msa1369010:CDS 40.0%
TGTTAGTGCACAAACACTTC+GGG + tig0018691:41976-41995 Msa1369010:CDS 40.0%
!! CATTTTAGGTGATAACCCCT+TGG + tig0018691:42024-42043 Msa1369010:CDS 40.0%
CCATGTAAGATAAACCCAAG+GGG - tig0018691:42042-42061 Msa1369010:intergenic 40.0%
TGAGGATGGTCCTTAATAGA+AGG - tig0018691:42118-42137 Msa1369010:intergenic 40.0%
! CCTACAAGAACATTTGGGTT+AGG - tig0018691:42187-42206 Msa1369010:intergenic 40.0%
CCTAACCCAAATGTTCTTGT+AGG + tig0018691:42184-42203 Msa1369010:CDS 40.0%
TGTTCTTGTAGGAGCTATTG+TGG + tig0018691:42195-42214 Msa1369010:CDS 40.0%
GTTCTTGTAGGAGCTATTGT+GGG + tig0018691:42196-42215 Msa1369010:CDS 40.0%
GGCGCATTAATATATGTGGT+TGG - tig0018691:42280-42299 Msa1369010:intergenic 40.0%
!! TCTCGTTTTTCACCCTTCAA+TGG - tig0018691:42562-42581 Msa1369010:intergenic 40.0%
AGAGAGAGATGGGATTTGGA+GGG - tig0018691:38301-38320 Msa1369010:intergenic 45.0%
AGAGAGAGAGAGATGGGATT+TGG - tig0018691:38305-38324 Msa1369010:intergenic 45.0%
!! TAGAGATGAGATGGTGTCAC+GGG - tig0018691:38402-38421 Msa1369010:intergenic 45.0%
!! TTTGCTGGCCAATGCCATTT+TGG - tig0018691:38532-38551 Msa1369010:intergenic 45.0%
! CTACTACTGGTGATGCTGAT+TGG + tig0018691:38567-38586 Msa1369010:CDS 45.0%
GAATGCACATGATTATGCGG+AGG + tig0018691:38605-38624 Msa1369010:CDS 45.0%
!! TTATGCGGAGGCATTATCGA+AGG + tig0018691:38617-38636 Msa1369010:CDS 45.0%
! TCTTTGAAGGACAACGTTCG+GGG + tig0018691:38649-38668 Msa1369010:CDS 45.0%
! GGAATTCGGGTTTGAGTGAT+GGG + tig0018691:38706-38725 Msa1369010:CDS 45.0%
TACAACACTGATCTTACCGG+CGG + tig0018691:38735-38754 Msa1369010:CDS 45.0%
TCGTGGAGTGTGATTGAGTT+TGG + tig0018691:38822-38841 Msa1369010:CDS 45.0%
GCGTTTCTGAGTTCATTAGG+AGG - tig0018691:38858-38877 Msa1369010:intergenic 45.0%
GAGTGAGTGAGAAAGAGAAG+TGG - tig0018691:39020-39039 Msa1369010:intergenic 45.0%
TATCAAGGAAGAACGCACGA+TGG - tig0018691:39193-39212 Msa1369010:intergenic 45.0%
! TTCCGTGTCATTATGTGGAC+TGG + tig0018691:39557-39576 Msa1369010:intron 45.0%
CTCCAGTCCACATAATGACA+CGG - tig0018691:39562-39581 Msa1369010:intergenic 45.0%
!! TGTCATTATGTGGACTGGAG+TGG + tig0018691:39562-39581 Msa1369010:intron 45.0%
AACCTCAGACCACAACTGTT+GGG + tig0018691:39899-39918 Msa1369010:CDS 45.0%
CTGTTTGTGTCCATGTCTTC+TGG - tig0018691:39930-39949 Msa1369010:intergenic 45.0%
CAGAAGACATGGACACAAAC+AGG + tig0018691:39928-39947 Msa1369010:CDS 45.0%
CATTGAAGAAGCAGCAAGTG+CGG - tig0018691:40012-40031 Msa1369010:intergenic 45.0%
AATAACCGGGATCCGATGAT+CGG - tig0018691:40040-40059 Msa1369010:intergenic 45.0%
TTACACCGACATGTCCTAAC+TGG - tig0018691:40707-40726 Msa1369010:intergenic 45.0%
GTTAGGACATGTCGGTGTAA+TGG + tig0018691:40707-40726 Msa1369010:intron 45.0%
TGTTGTAAGTTGCTTCCACC+TGG - tig0018691:41872-41891 Msa1369010:intergenic 45.0%
CCCCTTGGGTTTATCTTACA+TGG + tig0018691:42039-42058 Msa1369010:CDS 45.0%
CCACGATGATGAATACGTTG+TGG - tig0018691:42085-42104 Msa1369010:intergenic 45.0%
CCACAACGTATTCATCATCG+TGG + tig0018691:42082-42101 Msa1369010:CDS 45.0%
TGCAAGCAATCTGTTGAGGA+TGG - tig0018691:42132-42151 Msa1369010:intergenic 45.0%
TCCTCAACAGATTGCTTGCA+AGG + tig0018691:42132-42151 Msa1369010:CDS 45.0%
TCCTTGCAAGCAATCTGTTG+AGG - tig0018691:42136-42155 Msa1369010:intergenic 45.0%
CAACAGATTGCTTGCAAGGA+AGG + tig0018691:42136-42155 Msa1369010:CDS 45.0%
! AGAGACTTGCTTGTGTCTGT+TGG + tig0018691:42482-42501 Msa1369010:three_prime_UTR 45.0%
! TGTCTGTTGGCTGGATACAT+AGG + tig0018691:42495-42514 Msa1369010:three_prime_UTR 45.0%
!! ATAGAGTGAGGGTGTCATTG+TGG + tig0018691:42631-42650 Msa1369010:three_prime_UTR 45.0%
!!! TTTATTTATTTATTACATTT+TGG + tig0018691:39081-39100 Msa1369010:intron 5.0%
CCTCTCCCTCGTTTATCTGT+CGG + tig0018691:38244-38263 Msa1369010:five_prime_UTR 50.0%
!! AAGCGCCGACAGATAAACGA+GGG - tig0018691:38252-38271 Msa1369010:intergenic 50.0%
!! AAAGCGCCGACAGATAAACG+AGG - tig0018691:38253-38272 Msa1369010:intergenic 50.0%
GAGAGAGAGATGGGATTTGG+AGG - tig0018691:38302-38321 Msa1369010:intergenic 50.0%
! CTACTGGTGATGCTGATTGG+AGG + tig0018691:38570-38589 Msa1369010:CDS 50.0%
! ACGTTCGGGGTTTTTACCAG+AGG + tig0018691:38662-38681 Msa1369010:CDS 50.0%
ACAGAAGTGGCGTGGGAATT+CGG + tig0018691:38692-38711 Msa1369010:CDS 50.0%
! GGGAATTCGGGTTTGAGTGA+TGG + tig0018691:38705-38724 Msa1369010:CDS 50.0%
! ATTCGGGTTTGAGTGATGGG+TGG + tig0018691:38709-38728 Msa1369010:CDS 50.0%
ACGCTTTGGTCGCAATTCGT+TGG + tig0018691:38874-38893 Msa1369010:CDS 50.0%
! TGGGTTGACTCACTCACTCA+CGG + tig0018691:38973-38992 Msa1369010:intron 50.0%
TTGACTCACTCACTCACGGA+CGG + tig0018691:38977-38996 Msa1369010:intron 50.0%
AGGAAGAGGAAGGAGTGAGT+AGG - tig0018691:39050-39069 Msa1369010:intergenic 50.0%
CGGACTTCAAGGATACGAAC+TGG - tig0018691:39589-39608 Msa1369010:intergenic 50.0%
! CAACAGTTGTGGTCTGAGGT+TGG - tig0018691:39900-39919 Msa1369010:intergenic 50.0%
CAACCTCAGACCACAACTGT+TGG + tig0018691:39898-39917 Msa1369010:CDS 50.0%
! CGCACTTGCTGCTTCTTCAA+TGG + tig0018691:40010-40029 Msa1369010:CDS 50.0%
CACGTGATCCCGACACATAA+TGG + tig0018691:41019-41038 Msa1369010:intron 50.0%
AATTGTTATGGGGAGCCGCA+TGG + tig0018691:41322-41341 Msa1369010:CDS 50.0%
AGTAGCCCTCCTTAACCATG+CGG - tig0018691:41340-41359 Msa1369010:intergenic 50.0%
ATGGTTAAGGAGGGCTACTC+AGG + tig0018691:41341-41360 Msa1369010:CDS 50.0%
CCTTGGAGACAAGAACGTTG+AGG - tig0018691:41461-41480 Msa1369010:intergenic 50.0%
CCTCAACGTTCTTGTCTCCA+AGG + tig0018691:41458-41477 Msa1369010:CDS 50.0%
AAAAAACAATTCGCCCCCCG+TGG + tig0018691:41556-41575 Msa1369010:intron 50.0%
AAAAACAATTCGCCCCCCGT+GGG + tig0018691:41557-41576 Msa1369010:intron 50.0%
GCTCTTAACCTTGTGGTCGT+GGG - tig0018691:41590-41609 Msa1369010:intergenic 50.0%
GCTCTACCAACTGAGCTAGA+CGG + tig0018691:41615-41634 Msa1369010:intron 50.0%
CTCTACCAACTGAGCTAGAC+GGG + tig0018691:41616-41635 Msa1369010:intron 50.0%
TCACACATCGAGTACACTCC+TGG + tig0018691:41830-41849 Msa1369010:CDS 50.0%
GGTCTGTATATGAGTCCACC+AGG - tig0018691:41851-41870 Msa1369010:intergenic 50.0%
! GGTGGACTCATATACAGACC+AGG + tig0018691:41851-41870 Msa1369010:CDS 50.0%
GGACTCATATACAGACCAGG+TGG + tig0018691:41854-41873 Msa1369010:CDS 50.0%
CTTGTAGGAGCTATTGTGGG+AGG + tig0018691:42199-42218 Msa1369010:CDS 50.0%
ACTTGCTTGTGTCTGTTGGC+TGG + tig0018691:42486-42505 Msa1369010:three_prime_UTR 50.0%
CCGACAGATAAACGAGGGAG+AGG - tig0018691:38247-38266 Msa0849120:intergenic 55.0%
CACTTCTGTCTCTGGTCCTC+TGG - tig0018691:38681-38700 Msa1369010:intergenic 55.0%
CAGAGGACCAGAGACAGAAG+TGG + tig0018691:38679-38698 Msa1369010:CDS 55.0%
ACCAGAGACAGAAGTGGCGT+GGG + tig0018691:38685-38704 Msa1369010:CDS 55.0%
CAGAAGTGGCGTGGGAATTC+GGG + tig0018691:38693-38712 Msa1369010:CDS 55.0%
GTATACCCACGCGCCAAACA+TGG + tig0018691:39694-39713 Msa1369010:intron 55.0%
CTCCCAACAGTTGTGGTCTG+AGG - tig0018691:39904-39923 Msa1369010:intergenic 55.0%
CAGACCACAACTGTTGGGAG+AGG + tig0018691:39904-39923 Msa1369010:CDS 55.0%
TTGGGAGAGGCCAGAAGACA+TGG + tig0018691:39917-39936 Msa1369010:CDS 55.0%
TGAAGAAGCAGCAAGTGCGG+CGG - tig0018691:40009-40028 Msa1369010:intergenic 55.0%
GCATTCCGATCATCGGATCC+CGG + tig0018691:40032-40051 Msa1369010:CDS 55.0%
TATGGGGAGCCGCATGGTTA+AGG + tig0018691:41328-41347 Msa1369010:CDS 55.0%
GGTTGGGACAACAAGCATGC+TGG + tig0018691:41435-41454 Msa1369010:CDS 55.0%
AAAACAATTCGCCCCCCGTG+GGG + tig0018691:41558-41577 Msa1369010:intron 55.0%
GGCTCTTAACCTTGTGGTCG+TGG - tig0018691:41591-41610 Msa1369010:intergenic 55.0%
GCGCAAGGCTCTTAACCTTG+TGG - tig0018691:41597-41616 Msa1369010:intergenic 55.0%
!! AGCTCAGTTGGTAGAGCGCA+AGG - tig0018691:41612-41631 Msa1369010:intergenic 55.0%
! AACAGCCCGTCTAGCTCAGT+TGG - tig0018691:41624-41643 Msa1369010:intergenic 55.0%
GCATAGGAAGCTCTCTGCTG+AGG - tig0018691:41786-41805 Msa1369010:intergenic 55.0%
CACATCGAGTACACTCCTGG+TGG + tig0018691:41833-41852 Msa1369010:CDS 55.0%
GACCAGAGACAGAAGTGGCG+TGG + tig0018691:38684-38703 Msa1369010:CDS 60.0%
TCCCACGCCACTTCTGTCTC+TGG - tig0018691:38689-38708 Msa1369010:intergenic 60.0%
CACTGCCATGTTTGGCGCGT+GGG - tig0018691:39702-39721 Msa1369010:intergenic 60.0%
ACACTGCCATGTTTGGCGCG+TGG - tig0018691:39703-39722 Msa1369010:intergenic 60.0%
CTGGCCTCTCCCAACAGTTG+TGG - tig0018691:39911-39930 Msa1369010:intergenic 60.0%
GCGACATCGGAAGCTGGGTT+AGG - tig0018691:39975-39994 Msa1369010:intergenic 60.0%
AACCCAGCTTCCGATGTCGC+CGG + tig0018691:39975-39994 Msa1369010:CDS 60.0%
!! GGCTGTTTCTCCGGCGACAT+CGG - tig0018691:39988-40007 Msa1369010:intergenic 60.0%
!! AAGTGCGGCGGCTGTTTCTC+CGG - tig0018691:39997-40016 Msa1369010:intergenic 60.0%
GGGAGCCGCATGGTTAAGGA+GGG + tig0018691:41332-41351 Msa1369010:CDS 60.0%
GGAGCTATTGTGGGAGGACC+TGG + tig0018691:42205-42224 Msa1369010:CDS 60.0%
ACCGGCGGTTACTACGACGC+CGG + tig0018691:38750-38769 Msa1369010:CDS 65.0%
ACCGGCGTCGTAGTAACCGC+CGG - tig0018691:38754-38773 Msa1369010:intergenic 65.0%
CTCCGGCGACATCGGAAGCT+GGG - tig0018691:39980-39999 Msa1369010:intergenic 65.0%
TCTCCGGCGACATCGGAAGC+TGG - tig0018691:39981-40000 Msa1369010:intergenic 65.0%
GGGGAGCCGCATGGTTAAGG+AGG + tig0018691:41331-41350 Msa1369010:CDS 65.0%
GGCTCGAACCCACGACCACA+AGG + tig0018691:41579-41598 Msa1369010:intron 65.0%
TCGTGGGTTCGAGCCCCACG+GGG - tig0018691:41574-41593 Msa1369010:intergenic 70.0%
GTCGTGGGTTCGAGCCCCAC+GGG - tig0018691:41575-41594 Msa1369010:intergenic 70.0%
GGTCGTGGGTTCGAGCCCCA+CGG - tig0018691:41576-41595 Msa1369010:intergenic 70.0%
GTGGGTTCGAGCCCCACGGG+GGG - tig0018691:41572-41591 Msa1369010:intergenic 75.0%
CGTGGGTTCGAGCCCCACGG+GGG - tig0018691:41573-41592 Msa1369010:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0018691 gene 38212 42770 38212 ID=Msa1369010;Name=Msa1369010
tig0018691 mRNA 38212 42770 38212 ID=Msa1369010-mRNA-1;Parent=Msa1369010;Name=Msa1369010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=322|1|1|1|1|1|4|434|491
tig0018691 exon 38212 38950 38212 ID=Msa1369010-mRNA-1:exon:863;Parent=Msa1369010-mRNA-1
tig0018691 exon 39888 40187 39888 ID=Msa1369010-mRNA-1:exon:864;Parent=Msa1369010-mRNA-1
tig0018691 exon 41318 41479 41318 ID=Msa1369010-mRNA-1:exon:865;Parent=Msa1369010-mRNA-1
tig0018691 exon 41740 42770 41740 ID=Msa1369010-mRNA-1:exon:866;Parent=Msa1369010-mRNA-1
tig0018691 five_prime_UTR 38212 38533 38212 ID=Msa1369010-mRNA-1:five_prime_utr;Parent=Msa1369010-mRNA-1
tig0018691 CDS 38534 38950 38534 ID=Msa1369010-mRNA-1:cds;Parent=Msa1369010-mRNA-1
tig0018691 CDS 39888 40187 39888 ID=Msa1369010-mRNA-1:cds;Parent=Msa1369010-mRNA-1
tig0018691 CDS 41318 41479 41318 ID=Msa1369010-mRNA-1:cds;Parent=Msa1369010-mRNA-1
tig0018691 CDS 41740 42336 41740 ID=Msa1369010-mRNA-1:cds;Parent=Msa1369010-mRNA-1
tig0018691 three_prime_UTR 42337 42770 42337 ID=Msa1369010-mRNA-1:three_prime_utr;Parent=Msa1369010-mRNA-1
Gene Sequence

>Msa1369010

ATGGCATTGGCCAGCAAATCGTTGTTGTTTGTTCTACTACTGGTGATGCTGATTGGAGGAAGAAGAAGTGTGAATGCACATGATTATGCGGAGGCATTATCGAAGGCAATCATGTTCTTTGAAGGACAACGTTCGGGGTTTTTACCAGAGGACCAGAGACAGAAGTGGCGTGGGAATTCGGGTTTGAGTGATGGGTGGACTTACAACACTGATCTTACCGGCGGTTACTACGACGCCGGTGATAACATCAAATTTGGGTTTCCGATGGCGTTTACGACAACAATGTTGTCGTGGAGTGTGATTGAGTTTGGTGAAAACATGCCTCCTAATGAACTCAGAAACGCTTTGGTCGCAATTCGTTGGAGTACTGATTATTTGCTTAAGACTGTTTCTCAGTCTAACCGCATTTTTGTTCAGGTGGGTGAACCAACCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACAAACAGGAAAGTGTATGCTGTTGATGCACCTAACCCAGCTTCCGATGTCGCCGGAGAAACAGCCGCCGCACTTGCTGCTTCTTCAATGGCATTCCGATCATCGGATCCCGGTTATTCTGAGACATTACTCAGAAATGCTGTTAAGGCATTTCAATATGCAGACAGTTACAGGGGCGCATACAGTGACAATGCTGATGTTAAGGATGGTGTCTGTCCTTATTATTGTGATTTTGATGGATACCAGGACGAATTGTTATGGGGAGCCGCATGGTTAAGGAGGGCTACTCAGGATGAAAATTTCCTAAACTACATTCAAAGCAATGGTAAAACACTCGGTGCTGAAGACAACATTAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTTGTCTCCAAGGAAGTCCTAGAAGGAAATGTTGAATCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCCTATGCACACTACTACCTGAAACATCAAGTTCACACATCGAGTACACTCCTGGTGGACTCATATACAGACCAGGTGGAAGCAACTTACAACATGCAACTTCAATTGCTTTCCTTGAGTTAGTCTACGCCAATTACTTATCTCGCACGTCACAAACCATCAATTGTGGCAATGTTTATGTTAGTGCACAAACACTTCGGGAGCGTGCCAAGAGACAAGTTGATTACATTTTAGGTGATAACCCCTTGGGTTTATCTTACATGGTTGGTTATGGTAACAATTATCCACAACGTATTCATCATCGTGGCTCATCTCTACCTTCTATTAAGGACCATCCTCAACAGATTGCTTGCAAGGAAGGTTCAATATACTTCAATTCAACAAATCCTAACCCAAATGTTCTTGTAGGAGCTATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTATAGAAAATCTGAGCCAACCACATATATTAATGCGCCATTTGTTGGGGTTTTAGCATATTTTGTTGCTAATTAA
Protein sequence

>Msa1369010

MALASKSLLFVLLLVMLIGGRRSVNAHDYAEALSKAIMFFEGQRSGFLPEDQRQKWRGNSGLSDGWTYNTDLTGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGENMPPNELRNALVAIRWSTDYLLKTVSQSNRIFVQVGEPTSDHNCWERPEDMDTNRKVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQYADSYRGAYSDNADVKDGVCPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGNVESLESYKTSAESFLCTLLPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRERAKRQVDYILGDNPLGLSYMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADYRKSEPTTYINAPFVGVLAYFVAN*