Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526440 | XP_013447077.1 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526440 | A0A072TU95 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0526440 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0526440 | Msa0571840 | 0.868671 | 5.488840e-66 | -8.615850e-47 |
| Msa0526440 | Msa0577000 | 0.977455 | 8.145245e-144 | -8.615850e-47 |
| Msa0526440 | Msa0618820 | 0.991126 | 5.040477e-186 | -8.615850e-47 |
| Msa0526440 | Msa1085950 | 0.995237 | 2.633366e-214 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526440 | MtrunA17_Chr8g0387241 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Msa0526440 | MtrunA17_Chr5g0397361 | 44.068 | 295 | 100 | 9 | 3 | 291 | 5 | 240 | 2.93e-56 | 182 |
| Msa0526440 | MtrunA17_Chr2g0327621 | 49.315 | 146 | 55 | 6 | 143 | 279 | 71 | 206 | 6.40e-28 | 108 |
| Msa0526440 | MtrunA17_Chr2g0311591 | 77.419 | 62 | 14 | 0 | 211 | 272 | 156 | 217 | 7.03e-25 | 101 |
| Msa0526440 | MtrunA17_Chr1g0186171 | 38.854 | 157 | 72 | 4 | 133 | 269 | 208 | 360 | 1.37e-23 | 100 |
| Msa0526440 | MtrunA17_Chr1g0168401 | 67.797 | 59 | 19 | 0 | 211 | 269 | 305 | 363 | 9.09e-22 | 95.1 |
| Msa0526440 | MtrunA17_Chr1g0147111 | 49.412 | 85 | 41 | 1 | 185 | 269 | 194 | 276 | 1.90e-21 | 92.0 |
| Msa0526440 | MtrunA17_Chr4g0030421 | 59.375 | 64 | 26 | 0 | 211 | 274 | 21 | 84 | 4.08e-20 | 84.7 |
| Msa0526440 | MtrunA17_Chr3g0126721 | 47.826 | 92 | 46 | 1 | 184 | 275 | 191 | 280 | 3.09e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526440 | AT5G41380.1 | 55.440 | 193 | 64 | 7 | 129 | 309 | 114 | 296 | 5.77e-52 | 174 |
| Msa0526440 | AT1G63820.1 | 51.397 | 179 | 56 | 5 | 167 | 314 | 115 | 293 | 3.58e-43 | 150 |
| Msa0526440 | AT3G12890.1 | 63.514 | 74 | 27 | 0 | 199 | 272 | 113 | 186 | 3.62e-24 | 99.4 |
| Msa0526440 | AT2G33350.2 | 63.768 | 69 | 24 | 1 | 202 | 269 | 286 | 354 | 2.48e-22 | 97.1 |
| Msa0526440 | AT2G33350.1 | 63.768 | 69 | 24 | 1 | 202 | 269 | 287 | 355 | 2.81e-22 | 96.7 |
| Msa0526440 | AT2G33350.4 | 63.768 | 69 | 24 | 1 | 202 | 269 | 275 | 343 | 2.96e-22 | 96.7 |
| Msa0526440 | AT2G33350.5 | 63.768 | 69 | 24 | 1 | 202 | 269 | 295 | 363 | 3.00e-22 | 96.7 |
| Msa0526440 | AT1G04500.4 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0526440 | AT1G04500.1 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0526440 | AT1G04500.3 | 68.254 | 63 | 20 | 0 | 216 | 278 | 270 | 332 | 7.83e-22 | 95.1 |
| Msa0526440 | AT5G59990.1 | 42.405 | 158 | 73 | 4 | 135 | 289 | 85 | 227 | 2.10e-20 | 89.0 |
| Msa0526440 | AT4G27900.1 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0526440 | AT4G27900.2 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0526440 | AT5G53420.2 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0526440 | AT5G53420.5 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0526440 | AT5G53420.4 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0526440 | AT5G53420.1 | 43.529 | 85 | 41 | 1 | 185 | 269 | 185 | 262 | 1.37e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTGATTCTTATTAAAA+AGG | 0.223649 | 3_4:-80291485 | Msa0526440:five_prime_UTR |
| ATGAAGACGAAGTCGATTTC+TGG | 0.227779 | 3_4:-80290424 | Msa0526440:CDS |
| GAACTTTAACAAGACTATTA+AGG | 0.296751 | 3_4:-80290627 | Msa0526440:intron |
| TGTTCTCTTGGCTCTGTACT+TGG | 0.332786 | 3_4:+80290655 | None:intergenic |
| AAAGTTCCTCTGTGTTCTCT+TGG | 0.348760 | 3_4:+80290643 | None:intergenic |
| TTGTAGCACAGGTGATTTGC+AGG | 0.358853 | 3_4:-80290872 | Msa0526440:intron |
| GTTGGTCAATTTCAGTACTT+TGG | 0.368744 | 3_4:-80289961 | Msa0526440:CDS |
| GGAAGAAAAGGTTCATCAAA+TGG | 0.376126 | 3_4:+80291261 | None:intergenic |
| CTGATTAAACATGGAGCCTT+AGG | 0.397252 | 3_4:+80290449 | None:intergenic |
| TTGGTCAATTTCAGTACTTT+GGG | 0.401778 | 3_4:-80289960 | Msa0526440:CDS |
| TTGAGAAGGGTTTGTAGCAC+AGG | 0.409705 | 3_4:-80290883 | Msa0526440:CDS |
| ATTAGTACTGTGATGAGAAT+TGG | 0.436310 | 3_4:+80291311 | None:intergenic |
| TGAAGACGAAGTCGATTTCT+GGG | 0.449240 | 3_4:-80290423 | Msa0526440:intron |
| GGGTCTAGAGAAGGAAGAAA+AGG | 0.456147 | 3_4:+80291249 | None:intergenic |
| GAAATAGTCTCTTCTAATGA+TGG | 0.462483 | 3_4:-80291378 | Msa0526440:CDS |
| AAGAATAGTGGTTACGGAGT+TGG | 0.483748 | 3_4:-80289979 | Msa0526440:CDS |
| GAAGAAAAGGTTCATCAAAT+GGG | 0.486506 | 3_4:+80291262 | None:intergenic |
| TCTTGCGAATTCCCCTCCGT+TGG | 0.487308 | 3_4:+80290734 | None:intergenic |
| TCTTCGGAACTATATTCATT+CGG | 0.490450 | 3_4:-80291432 | Msa0526440:CDS |
| GTCTCTTCTAATGATGGAAG+TGG | 0.496551 | 3_4:-80291372 | Msa0526440:CDS |
| GAACAATATCTGAAGAATAG+TGG | 0.497442 | 3_4:-80289991 | Msa0526440:CDS |
| GAGGAACAAAATTTCAAAGT+AGG | 0.499993 | 3_4:-80290713 | Msa0526440:CDS |
| CTGCAGTCGTGTGCAGAGGC+AGG | 0.500528 | 3_4:-80291507 | Msa0526440:five_prime_UTR |
| TGAGTTTGAAATAGAAAACT+AGG | 0.503168 | 3_4:+80290970 | None:intergenic |
| ATCGACCACGCGTACGTGGC+AGG | 0.512738 | 3_4:-80290502 | Msa0526440:CDS |
| TTGATTCATCGAAATTTCAA+AGG | 0.515625 | 3_4:-80290933 | Msa0526440:CDS |
| TATCTGAAGAATAGTGGTTA+CGG | 0.515829 | 3_4:-80289985 | Msa0526440:CDS |
| CCCTGAAAATAGTTTGAGAA+GGG | 0.527305 | 3_4:-80290896 | Msa0526440:CDS |
| AATAATATGTCTCCAACGGA+GGG | 0.534384 | 3_4:-80290746 | Msa0526440:CDS |
| GAGAAACTTTCATTACAAAG+AGG | 0.548482 | 3_4:+80291165 | None:intergenic |
| ATGAATCAACGAGATTATCA+TGG | 0.556874 | 3_4:+80290947 | None:intergenic |
| AAATAATATGTCTCCAACGG+AGG | 0.560154 | 3_4:-80290747 | Msa0526440:CDS |
| AGAAAATAATATGTCTCCAA+CGG | 0.563673 | 3_4:-80290750 | Msa0526440:CDS |
| CGAGCCCACGGAGATTCCTA+AGG | 0.567771 | 3_4:-80290465 | Msa0526440:CDS |
| TCTTCATCTCTGATTAAACA+TGG | 0.570013 | 3_4:+80290440 | None:intergenic |
| CCCCTGAAAATAGTTTGAGA+AGG | 0.571206 | 3_4:-80290897 | Msa0526440:CDS |
| TCATCACCACTGTAACTATG+AGG | 0.575325 | 3_4:+80291048 | None:intergenic |
| ATTAGAAGAGACTATTTCTG+AGG | 0.581489 | 3_4:+80291383 | None:intergenic |
| CACCACTGTAACTATGAGGA+AGG | 0.587875 | 3_4:+80291052 | None:intergenic |
| GTCTCTGCAGTCGTGTGCAG+AGG | 0.597260 | 3_4:-80291511 | Msa0526440:five_prime_UTR |
| TGCACGCAATGACGAGCCCA+CGG | 0.603558 | 3_4:-80290477 | Msa0526440:CDS |
| GCAAACCTGCCACGTACGCG+TGG | 0.603581 | 3_4:+80290497 | None:intergenic |
| TTCCTTCCTCATAGTTACAG+TGG | 0.611300 | 3_4:-80291054 | Msa0526440:CDS |
| GACAATCGACCACGCGTACG+TGG | 0.616500 | 3_4:-80290506 | Msa0526440:CDS |
| TTTCTGAGGTTGAATGTGTG+TGG | 0.627039 | 3_4:+80291397 | None:intergenic |
| TGATGTAGATGGAAGAATTG+CGG | 0.651165 | 3_4:-80290047 | Msa0526440:intron |
| AACGGAGGGGAATTCGCAAG+AGG | 0.653430 | 3_4:-80290732 | Msa0526440:CDS |
| ATAATATGTCTCCAACGGAG+GGG | 0.654626 | 3_4:-80290745 | Msa0526440:CDS |
| CAAAGTAGGTCGTTATAGCG+CGG | 0.657198 | 3_4:-80290699 | Msa0526440:CDS |
| CATGAAGATGATGTAACAGT+GGG | 0.675111 | 3_4:-80290021 | Msa0526440:CDS |
| GGAGCCTTAGGAATCTCCGT+GGG | 0.684622 | 3_4:+80290461 | None:intergenic |
| GCATGAAGATGATGTAACAG+TGG | 0.695685 | 3_4:-80290022 | Msa0526440:CDS |
| TGGAGCCTTAGGAATCTCCG+TGG | 0.702219 | 3_4:+80290460 | None:intergenic |
| AAAGAGGCTGCACTGCACTG+TGG | 0.704215 | 3_4:+80291181 | None:intergenic |
| TGAATGTGTGTGGAAAGTAG+TGG | 0.760361 | 3_4:+80291407 | None:intergenic |
| ACAGAGCCAAGAGAACACAG+AGG | 0.782868 | 3_4:-80290649 | Msa0526440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr3_4:80290677-80290696 | Msa0526440:CDS | 20.0% |
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr3_4:80290677-80290696 | Msa0526440:CDS | 20.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr3_4:80289985-80290004 | Msa0526440:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr3_4:80290022-80290041 | Msa0526440:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr3_4:80290244-80290263 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr3_4:80290503-80290522 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr3_4:80290537-80290556 | Msa0526440:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr3_4:80290720-80290739 | Msa0526440:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr3_4:80290843-80290862 | Msa0526440:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr3_4:80291133-80291152 | Msa0526440:CDS | 25.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr3_4:80289985-80290004 | Msa0526440:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr3_4:80290022-80290041 | Msa0526440:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr3_4:80290244-80290263 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr3_4:80290503-80290522 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr3_4:80290537-80290556 | Msa0526440:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr3_4:80290720-80290739 | Msa0526440:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr3_4:80290843-80290862 | Msa0526440:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr3_4:80291133-80291152 | Msa0526440:CDS | 25.0% |
| TCTTCGGAACTATATTCATT+CGG | - | chr3_4:80290038-80290057 | Msa0526440:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr3_4:80290090-80290109 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr3_4:80290092-80290111 | Msa0526440:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr3_4:80290151-80290170 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr3_4:80290152-80290171 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr3_4:80290162-80290181 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr3_4:80290211-80290230 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr3_4:80290245-80290264 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr3_4:80290308-80290327 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr3_4:80290337-80290356 | Msa0526440:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr3_4:80290526-80290545 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr3_4:80290757-80290776 | Msa0526440:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr3_4:80291033-80291052 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr3_4:80291192-80291211 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr3_4:80291379-80291398 | Msa0526440:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr3_4:80291380-80291399 | Msa0526440:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr3_4:80291397-80291416 | Msa0526440:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr3_4:80291479-80291498 | Msa0526440:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr3_4:80291485-80291504 | Msa0526440:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr3_4:80291510-80291529 | Msa0526440:five_prime_UTR | 30.0% | |
| TCTTCGGAACTATATTCATT+CGG | - | chr3_4:80290038-80290057 | Msa0526440:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr3_4:80290090-80290109 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr3_4:80290092-80290111 | Msa0526440:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr3_4:80290151-80290170 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr3_4:80290152-80290171 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr3_4:80290162-80290181 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr3_4:80290211-80290230 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr3_4:80290245-80290264 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr3_4:80290308-80290327 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr3_4:80290337-80290356 | Msa0526440:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr3_4:80290526-80290545 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr3_4:80290757-80290776 | Msa0526440:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr3_4:80291033-80291052 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr3_4:80291192-80291211 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr3_4:80291379-80291398 | Msa0526440:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr3_4:80291380-80291399 | Msa0526440:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr3_4:80291397-80291416 | Msa0526440:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr3_4:80291479-80291498 | Msa0526440:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr3_4:80291485-80291504 | Msa0526440:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr3_4:80291510-80291529 | Msa0526440:five_prime_UTR | 30.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr3_4:80290127-80290146 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr3_4:80290212-80290231 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr3_4:80290254-80290273 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr3_4:80290345-80290364 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr3_4:80290576-80290595 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr3_4:80290577-80290596 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr3_4:80290574-80290593 | Msa0526440:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr3_4:80290578-80290597 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr3_4:80290723-80290742 | Msa0526440:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr3_4:80290724-80290743 | Msa0526440:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr3_4:80291146-80291165 | Msa0526440:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr3_4:80291412-80291431 | Msa0526440:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr3_4:80291423-80291442 | Msa0526440:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr3_4:80291449-80291468 | Msa0526440:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr3_4:80291509-80291528 | Msa0526440:five_prime_UTR | 35.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr3_4:80290127-80290146 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr3_4:80290212-80290231 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr3_4:80290254-80290273 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr3_4:80290345-80290364 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr3_4:80290576-80290595 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr3_4:80290577-80290596 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr3_4:80290574-80290593 | Msa0526440:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr3_4:80290578-80290597 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr3_4:80290723-80290742 | Msa0526440:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr3_4:80290724-80290743 | Msa0526440:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr3_4:80291146-80291165 | Msa0526440:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr3_4:80291412-80291431 | Msa0526440:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr3_4:80291423-80291442 | Msa0526440:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr3_4:80291449-80291468 | Msa0526440:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr3_4:80291509-80291528 | Msa0526440:five_prime_UTR | 35.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr3_4:80290066-80290085 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr3_4:80290076-80290095 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr3_4:80290098-80290117 | Msa0526440:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr3_4:80290131-80290150 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr3_4:80290346-80290365 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr3_4:80290416-80290435 | Msa0526440:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr3_4:80290425-80290444 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr3_4:80290573-80290592 | Msa0526440:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr3_4:80290725-80290744 | Msa0526440:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr3_4:80290830-80290849 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr3_4:80291024-80291043 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr3_4:80291046-80291065 | Msa0526440:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr3_4:80291047-80291066 | Msa0526440:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr3_4:80291448-80291467 | Msa0526440:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr3_4:80291491-80291510 | Msa0526440:five_prime_UTR | 40.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr3_4:80290066-80290085 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr3_4:80290076-80290095 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr3_4:80290098-80290117 | Msa0526440:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr3_4:80290131-80290150 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr3_4:80290346-80290365 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr3_4:80290416-80290435 | Msa0526440:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr3_4:80290425-80290444 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr3_4:80290573-80290592 | Msa0526440:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr3_4:80290725-80290744 | Msa0526440:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr3_4:80290830-80290849 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr3_4:80291024-80291043 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr3_4:80291046-80291065 | Msa0526440:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr3_4:80291047-80291066 | Msa0526440:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr3_4:80291448-80291467 | Msa0526440:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr3_4:80291491-80291510 | Msa0526440:five_prime_UTR | 40.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr3_4:80290224-80290243 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr3_4:80290233-80290252 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr3_4:80290275-80290294 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr3_4:80290278-80290297 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr3_4:80290421-80290440 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr3_4:80290587-80290606 | Msa0526440:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr3_4:80290598-80290617 | Msa0526440:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr3_4:80290771-80290790 | Msa0526440:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr3_4:80290818-80290837 | None:intergenic | 45.0% |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr3_4:80290224-80290243 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr3_4:80290233-80290252 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr3_4:80290275-80290294 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr3_4:80290278-80290297 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr3_4:80290421-80290440 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr3_4:80290587-80290606 | Msa0526440:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr3_4:80290598-80290617 | Msa0526440:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr3_4:80290771-80290790 | Msa0526440:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr3_4:80290818-80290837 | None:intergenic | 45.0% |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr3_4:80290821-80290840 | Msa0526440:intron | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr3_4:80290821-80290840 | Msa0526440:intron | 50.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr3_4:80290292-80290311 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr3_4:80290739-80290758 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr3_4:80290738-80290757 | Msa0526440:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr3_4:80291012-80291031 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr3_4:80291013-80291032 | None:intergenic | 55.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr3_4:80290292-80290311 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr3_4:80290739-80290758 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr3_4:80290738-80290757 | Msa0526440:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr3_4:80291012-80291031 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr3_4:80291013-80291032 | None:intergenic | 55.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr3_4:80289959-80289978 | Msa0526440:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr3_4:80290964-80290983 | Msa0526440:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr3_4:80290993-80291012 | Msa0526440:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr3_4:80291005-80291024 | Msa0526440:CDS | 60.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr3_4:80289959-80289978 | Msa0526440:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr3_4:80290964-80290983 | Msa0526440:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr3_4:80290993-80291012 | Msa0526440:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr3_4:80291005-80291024 | Msa0526440:CDS | 60.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr3_4:80289963-80289982 | Msa0526440:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr3_4:80290968-80290987 | Msa0526440:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr3_4:80290976-80290995 | None:intergenic | 65.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr3_4:80289963-80289982 | Msa0526440:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr3_4:80290968-80290987 | Msa0526440:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr3_4:80290976-80290995 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 80289954 | 80291538 | 80289954 | ID=Msa0526440;Name=Msa0526440 |
| chr3_4 | mRNA | 80289954 | 80291538 | 80289954 | ID=Msa0526440-mRNA-1;Parent=Msa0526440;Name=Msa0526440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|0.5|1|1|1|4|0|324 |
| chr3_4 | exon | 80289954 | 80290061 | 80289954 | ID=Msa0526440-mRNA-1:exon:24147;Parent=Msa0526440-mRNA-1 |
| chr3_4 | exon | 80290424 | 80290552 | 80290424 | ID=Msa0526440-mRNA-1:exon:24146;Parent=Msa0526440-mRNA-1 |
| chr3_4 | exon | 80290628 | 80290780 | 80290628 | ID=Msa0526440-mRNA-1:exon:24145;Parent=Msa0526440-mRNA-1 |
| chr3_4 | exon | 80290873 | 80291538 | 80290873 | ID=Msa0526440-mRNA-1:exon:24144;Parent=Msa0526440-mRNA-1 |
| chr3_4 | five_prime_UTR | 80291458 | 80291538 | 80291458 | ID=Msa0526440-mRNA-1:five_prime_utr;Parent=Msa0526440-mRNA-1 |
| chr3_4 | CDS | 80290873 | 80291457 | 80290873 | ID=Msa0526440-mRNA-1:cds;Parent=Msa0526440-mRNA-1 |
| chr3_4 | CDS | 80290628 | 80290780 | 80290628 | ID=Msa0526440-mRNA-1:cds;Parent=Msa0526440-mRNA-1 |
| chr3_4 | CDS | 80290424 | 80290552 | 80290424 | ID=Msa0526440-mRNA-1:cds;Parent=Msa0526440-mRNA-1 |
| chr3_4 | CDS | 80289954 | 80290061 | 80289954 | ID=Msa0526440-mRNA-1:cds;Parent=Msa0526440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
