Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571840 | XP_013447077.1 | 98.765 | 324 | 4 | 0 | 1 | 324 | 1 | 324 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571840 | A0A072TU95 | 98.765 | 324 | 4 | 0 | 1 | 324 | 1 | 324 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0571840 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0526440 | Msa0571840 | 0.868671 | 5.488840e-66 | -8.615850e-47 |
| Msa0571840 | Msa0577000 | 0.872133 | 4.018409e-67 | -8.615850e-47 |
| Msa0571840 | Msa0618820 | 0.868449 | 6.477708e-66 | -8.615850e-47 |
| Msa0571840 | Msa1085950 | 0.863516 | 2.354206e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571840 | MtrunA17_Chr8g0387241 | 98.765 | 324 | 4 | 0 | 1 | 324 | 1 | 324 | 0.0 | 661 |
| Msa0571840 | MtrunA17_Chr5g0397361 | 44.068 | 295 | 100 | 9 | 3 | 291 | 5 | 240 | 2.97e-56 | 182 |
| Msa0571840 | MtrunA17_Chr2g0327621 | 49.315 | 146 | 55 | 6 | 143 | 279 | 71 | 206 | 6.27e-28 | 108 |
| Msa0571840 | MtrunA17_Chr2g0311591 | 77.419 | 62 | 14 | 0 | 211 | 272 | 156 | 217 | 7.10e-25 | 101 |
| Msa0571840 | MtrunA17_Chr1g0186171 | 38.854 | 157 | 72 | 4 | 133 | 269 | 208 | 360 | 1.29e-23 | 100 |
| Msa0571840 | MtrunA17_Chr1g0168401 | 67.797 | 59 | 19 | 0 | 211 | 269 | 305 | 363 | 9.26e-22 | 95.1 |
| Msa0571840 | MtrunA17_Chr1g0147111 | 49.412 | 85 | 41 | 1 | 185 | 269 | 194 | 276 | 1.88e-21 | 92.4 |
| Msa0571840 | MtrunA17_Chr4g0030421 | 59.375 | 64 | 26 | 0 | 211 | 274 | 21 | 84 | 4.04e-20 | 84.7 |
| Msa0571840 | MtrunA17_Chr3g0126721 | 47.826 | 92 | 46 | 1 | 184 | 275 | 191 | 280 | 3.18e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571840 | AT5G41380.1 | 55.440 | 193 | 64 | 7 | 129 | 309 | 114 | 296 | 5.83e-52 | 174 |
| Msa0571840 | AT1G63820.1 | 51.397 | 179 | 56 | 5 | 167 | 314 | 115 | 293 | 3.62e-43 | 150 |
| Msa0571840 | AT3G12890.1 | 63.514 | 74 | 27 | 0 | 199 | 272 | 113 | 186 | 3.51e-24 | 99.4 |
| Msa0571840 | AT2G33350.2 | 63.768 | 69 | 24 | 1 | 202 | 269 | 286 | 354 | 2.45e-22 | 97.1 |
| Msa0571840 | AT2G33350.1 | 63.768 | 69 | 24 | 1 | 202 | 269 | 287 | 355 | 2.57e-22 | 97.1 |
| Msa0571840 | AT2G33350.5 | 63.768 | 69 | 24 | 1 | 202 | 269 | 295 | 363 | 3.00e-22 | 96.7 |
| Msa0571840 | AT2G33350.4 | 63.768 | 69 | 24 | 1 | 202 | 269 | 275 | 343 | 3.05e-22 | 96.7 |
| Msa0571840 | AT1G04500.4 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.19e-22 | 95.5 |
| Msa0571840 | AT1G04500.1 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.19e-22 | 95.5 |
| Msa0571840 | AT1G04500.3 | 68.254 | 63 | 20 | 0 | 216 | 278 | 270 | 332 | 7.45e-22 | 95.1 |
| Msa0571840 | AT5G59990.1 | 42.405 | 158 | 73 | 4 | 135 | 289 | 85 | 227 | 2.10e-20 | 89.0 |
| Msa0571840 | AT4G27900.1 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.02e-17 | 82.0 |
| Msa0571840 | AT4G27900.2 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.02e-17 | 82.0 |
| Msa0571840 | AT5G53420.2 | 43.023 | 86 | 42 | 1 | 184 | 269 | 105 | 183 | 1.04e-16 | 77.4 |
| Msa0571840 | AT5G53420.5 | 43.023 | 86 | 42 | 1 | 184 | 269 | 105 | 183 | 1.04e-16 | 77.4 |
| Msa0571840 | AT5G53420.4 | 43.023 | 86 | 42 | 1 | 184 | 269 | 105 | 183 | 1.04e-16 | 77.4 |
| Msa0571840 | AT5G53420.1 | 43.529 | 85 | 41 | 1 | 185 | 269 | 185 | 262 | 1.35e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGACGAAGTCGATTTC+TGG | 0.227779 | 4_1:-74564352 | Msa0571840:CDS |
| GAACTTTAACAAGACTATTA+AGG | 0.296751 | 4_1:-74564555 | Msa0571840:intron |
| TGTTCTCTTGGCTCTGTACT+TGG | 0.332786 | 4_1:+74564583 | None:intergenic |
| AAAGTTCCTCTGTGTTCTCT+TGG | 0.348760 | 4_1:+74564571 | None:intergenic |
| TTGTAGCACAGGTGATTTGC+AGG | 0.358853 | 4_1:-74564800 | Msa0571840:intron |
| GTTGGTCAATTTCAGTACTT+TGG | 0.368744 | 4_1:-74563892 | Msa0571840:CDS |
| GGAAGAAAAGGTTCATCAAA+TGG | 0.376126 | 4_1:+74565189 | None:intergenic |
| CTGATTAAACATGGAGCCTT+AGG | 0.397252 | 4_1:+74564377 | None:intergenic |
| TTGGTCAATTTCAGTACTTT+GGG | 0.401778 | 4_1:-74563891 | Msa0571840:CDS |
| TTGAGAAGGGTTTGTAGCAC+AGG | 0.409705 | 4_1:-74564811 | Msa0571840:CDS |
| CTGCAGCCGTGCGCAGAGGC+AGG | 0.424574 | 4_1:-74565435 | Msa0571840:five_prime_UTR |
| ATTAGTACTGTGATGAGAAT+TGG | 0.436310 | 4_1:+74565239 | None:intergenic |
| TGAAGACGAAGTCGATTTCT+GGG | 0.449240 | 4_1:-74564351 | Msa0571840:intron |
| GGGTCTAGAGAAGGAAGAAA+AGG | 0.456147 | 4_1:+74565177 | None:intergenic |
| GAAATAGTCTCTTCTAATGA+TGG | 0.462483 | 4_1:-74565306 | Msa0571840:CDS |
| AAGAATAGTGGTTACGGAGT+TGG | 0.483748 | 4_1:-74563910 | Msa0571840:CDS |
| GAAGAAAAGGTTCATCAAAT+GGG | 0.486506 | 4_1:+74565190 | None:intergenic |
| TCTTGCGAATTCCCCTCCGT+TGG | 0.487308 | 4_1:+74564662 | None:intergenic |
| TCTTCGGAACTATATTCATT+CGG | 0.490450 | 4_1:-74565360 | Msa0571840:CDS |
| GTCTCTTCTAATGATGGAAG+TGG | 0.496551 | 4_1:-74565300 | Msa0571840:CDS |
| GAACAATATCTGAAGAATAG+TGG | 0.497442 | 4_1:-74563922 | Msa0571840:CDS |
| GAGGAACAAAATTTCAAAGT+AGG | 0.499993 | 4_1:-74564641 | Msa0571840:CDS |
| TGAGTTTGAAATAGAAAACT+AGG | 0.503168 | 4_1:+74564898 | None:intergenic |
| ATCGACCACGCGTACGTGGC+AGG | 0.512738 | 4_1:-74564430 | Msa0571840:CDS |
| TTGATTCATCGAAATTTCAA+AGG | 0.515625 | 4_1:-74564861 | Msa0571840:CDS |
| TATCTGAAGAATAGTGGTTA+CGG | 0.515829 | 4_1:-74563916 | Msa0571840:CDS |
| CCCTGAAAATAGTTTGAGAA+GGG | 0.527305 | 4_1:-74564824 | Msa0571840:CDS |
| GTCTCTGCAGCCGTGCGCAG+AGG | 0.531877 | 4_1:-74565439 | Msa0571840:five_prime_UTR |
| AATAATATGTCTCCAACGGA+GGG | 0.534384 | 4_1:-74564674 | Msa0571840:CDS |
| GAGAAACTTTCATTACAAAG+AGG | 0.548482 | 4_1:+74565093 | None:intergenic |
| ATGAATCAACGAGATTATCA+TGG | 0.556874 | 4_1:+74564875 | None:intergenic |
| AAATAATATGTCTCCAACGG+AGG | 0.560154 | 4_1:-74564675 | Msa0571840:CDS |
| AGAAAATAATATGTCTCCAA+CGG | 0.563673 | 4_1:-74564678 | Msa0571840:CDS |
| CGAGCCCACGGAGATTCCTA+AGG | 0.567771 | 4_1:-74564393 | Msa0571840:CDS |
| TCTTCATCTCTGATTAAACA+TGG | 0.570013 | 4_1:+74564368 | None:intergenic |
| CCCCTGAAAATAGTTTGAGA+AGG | 0.571206 | 4_1:-74564825 | Msa0571840:CDS |
| TCATCACCACTGTAACTATG+AGG | 0.575325 | 4_1:+74564976 | None:intergenic |
| ATTAGAAGAGACTATTTCTG+AGG | 0.581489 | 4_1:+74565311 | None:intergenic |
| CACCACTGTAACTATGAGGA+AGG | 0.587875 | 4_1:+74564980 | None:intergenic |
| CAGTATCCTGCCTCTGCGCA+CGG | 0.596188 | 4_1:+74565429 | None:intergenic |
| TGCACGCAATGACGAGCCCA+CGG | 0.603558 | 4_1:-74564405 | Msa0571840:CDS |
| GCAAACCTGCCACGTACGCG+TGG | 0.603581 | 4_1:+74564425 | None:intergenic |
| TTCCTTCCTCATAGTTACAG+TGG | 0.611300 | 4_1:-74564982 | Msa0571840:CDS |
| GACAATCGACCACGCGTACG+TGG | 0.616500 | 4_1:-74564434 | Msa0571840:CDS |
| TTTCTGAGGTTGAATGTGTG+TGG | 0.627039 | 4_1:+74565325 | None:intergenic |
| AAAGAGGCTGCACTGTACTG+TGG | 0.638261 | 4_1:+74565109 | None:intergenic |
| TGATGTAGATGGAAGAATTG+CGG | 0.651165 | 4_1:-74563978 | Msa0571840:intron |
| AACGGAGGGGAATTCGCAAG+AGG | 0.653430 | 4_1:-74564660 | Msa0571840:CDS |
| ATAATATGTCTCCAACGGAG+GGG | 0.654626 | 4_1:-74564673 | Msa0571840:CDS |
| CAAAGTAGGTCGTTATAGCG+CGG | 0.657198 | 4_1:-74564627 | Msa0571840:CDS |
| CATGAAGATGATGTAACAGT+GGG | 0.675111 | 4_1:-74563952 | Msa0571840:CDS |
| GGAGCCTTAGGAATCTCCGT+GGG | 0.684622 | 4_1:+74564389 | None:intergenic |
| GCATGAAGATGATGTAACAG+TGG | 0.695685 | 4_1:-74563953 | Msa0571840:CDS |
| TGGAGCCTTAGGAATCTCCG+TGG | 0.702219 | 4_1:+74564388 | None:intergenic |
| TGAATGTGTGTGGAAAGTAG+TGG | 0.760361 | 4_1:+74565335 | None:intergenic |
| ACAGAGCCAAGAGAACACAG+AGG | 0.782868 | 4_1:-74564577 | Msa0571840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr4_1:74564608-74564627 | Msa0571840:CDS | 20.0% |
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr4_1:74564608-74564627 | Msa0571840:CDS | 20.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr4_1:74563953-74563972 | Msa0571840:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr4_1:74564175-74564194 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr4_1:74564434-74564453 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr4_1:74564468-74564487 | Msa0571840:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr4_1:74564651-74564670 | Msa0571840:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr4_1:74564774-74564793 | Msa0571840:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr4_1:74565064-74565083 | Msa0571840:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr4_1:74563953-74563972 | Msa0571840:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr4_1:74564175-74564194 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr4_1:74564434-74564453 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr4_1:74564468-74564487 | Msa0571840:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr4_1:74564651-74564670 | Msa0571840:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr4_1:74564774-74564793 | Msa0571840:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr4_1:74565064-74565083 | Msa0571840:CDS | 25.0% |
| TCTTCGGAACTATATTCATT+CGG | - | chr4_1:74563969-74563988 | Msa0571840:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr4_1:74564021-74564040 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr4_1:74564023-74564042 | Msa0571840:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr4_1:74564082-74564101 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr4_1:74564083-74564102 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr4_1:74564093-74564112 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr4_1:74564142-74564161 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr4_1:74564176-74564195 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr4_1:74564239-74564258 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr4_1:74564268-74564287 | Msa0571840:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr4_1:74564457-74564476 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr4_1:74564688-74564707 | Msa0571840:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr4_1:74564964-74564983 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr4_1:74565123-74565142 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr4_1:74565307-74565326 | Msa0571840:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr4_1:74565308-74565327 | Msa0571840:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr4_1:74565325-74565344 | Msa0571840:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr4_1:74565407-74565426 | Msa0571840:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr4_1:74565413-74565432 | Msa0571840:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr4_1:74565438-74565457 | Msa0571840:five_prime_UTR | 30.0% | |
| TCTTCGGAACTATATTCATT+CGG | - | chr4_1:74563969-74563988 | Msa0571840:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr4_1:74564021-74564040 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr4_1:74564023-74564042 | Msa0571840:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr4_1:74564082-74564101 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr4_1:74564083-74564102 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr4_1:74564093-74564112 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr4_1:74564142-74564161 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr4_1:74564176-74564195 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr4_1:74564239-74564258 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr4_1:74564268-74564287 | Msa0571840:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr4_1:74564457-74564476 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr4_1:74564688-74564707 | Msa0571840:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr4_1:74564964-74564983 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr4_1:74565123-74565142 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr4_1:74565307-74565326 | Msa0571840:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr4_1:74565308-74565327 | Msa0571840:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr4_1:74565325-74565344 | Msa0571840:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr4_1:74565407-74565426 | Msa0571840:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr4_1:74565413-74565432 | Msa0571840:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr4_1:74565438-74565457 | Msa0571840:five_prime_UTR | 30.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr4_1:74564143-74564162 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr4_1:74564185-74564204 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr4_1:74564276-74564295 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr4_1:74564507-74564526 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr4_1:74564508-74564527 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr4_1:74564505-74564524 | Msa0571840:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr4_1:74564509-74564528 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr4_1:74564654-74564673 | Msa0571840:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr4_1:74564655-74564674 | Msa0571840:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr4_1:74565077-74565096 | Msa0571840:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr4_1:74565340-74565359 | Msa0571840:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr4_1:74565351-74565370 | Msa0571840:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr4_1:74565377-74565396 | Msa0571840:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr4_1:74565437-74565456 | Msa0571840:five_prime_UTR | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr4_1:74564143-74564162 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr4_1:74564185-74564204 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr4_1:74564276-74564295 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr4_1:74564507-74564526 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr4_1:74564508-74564527 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr4_1:74564505-74564524 | Msa0571840:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr4_1:74564509-74564528 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr4_1:74564654-74564673 | Msa0571840:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr4_1:74564655-74564674 | Msa0571840:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr4_1:74565077-74565096 | Msa0571840:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr4_1:74565340-74565359 | Msa0571840:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr4_1:74565351-74565370 | Msa0571840:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr4_1:74565377-74565396 | Msa0571840:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr4_1:74565437-74565456 | Msa0571840:five_prime_UTR | 35.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr4_1:74563997-74564016 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr4_1:74564007-74564026 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr4_1:74564029-74564048 | Msa0571840:intron | 40.0% |
| !! | TGGAGACCTTCCATTTTTCT+CGG | - | chr4_1:74564049-74564068 | Msa0571840:intron | 40.0% |
| AAGAGTCCGAGAAAAATGGA+AGG | + | chr4_1:74564058-74564077 | None:intergenic | 40.0% | |
| !!! | GTACTGTGGTTTTGATCAGT+TGG | + | chr4_1:74564209-74564228 | None:intergenic | 40.0% |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr4_1:74564277-74564296 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr4_1:74564347-74564366 | Msa0571840:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr4_1:74564356-74564375 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr4_1:74564504-74564523 | Msa0571840:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr4_1:74564656-74564675 | Msa0571840:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr4_1:74564761-74564780 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr4_1:74564955-74564974 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr4_1:74564977-74564996 | Msa0571840:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr4_1:74564978-74564997 | Msa0571840:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr4_1:74565376-74565395 | Msa0571840:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr4_1:74565419-74565438 | Msa0571840:five_prime_UTR | 40.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr4_1:74563997-74564016 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr4_1:74564007-74564026 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr4_1:74564029-74564048 | Msa0571840:intron | 40.0% |
| !! | TGGAGACCTTCCATTTTTCT+CGG | - | chr4_1:74564049-74564068 | Msa0571840:intron | 40.0% |
| AAGAGTCCGAGAAAAATGGA+AGG | + | chr4_1:74564058-74564077 | None:intergenic | 40.0% | |
| !!! | GTACTGTGGTTTTGATCAGT+TGG | + | chr4_1:74564209-74564228 | None:intergenic | 40.0% |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr4_1:74564277-74564296 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr4_1:74564347-74564366 | Msa0571840:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr4_1:74564356-74564375 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr4_1:74564504-74564523 | Msa0571840:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr4_1:74564656-74564675 | Msa0571840:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr4_1:74564761-74564780 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr4_1:74564955-74564974 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr4_1:74564977-74564996 | Msa0571840:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr4_1:74564978-74564997 | Msa0571840:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr4_1:74565376-74565395 | Msa0571840:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr4_1:74565419-74565438 | Msa0571840:five_prime_UTR | 40.0% | |
| GGGAAAGAGTCCGAGAAAAA+TGG | + | chr4_1:74564062-74564081 | None:intergenic | 45.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr4_1:74564155-74564174 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr4_1:74564164-74564183 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr4_1:74564206-74564225 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr4_1:74564352-74564371 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr4_1:74564518-74564537 | Msa0571840:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr4_1:74564529-74564548 | Msa0571840:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr4_1:74564702-74564721 | Msa0571840:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr4_1:74564749-74564768 | None:intergenic | 45.0% |
| GGGAAAGAGTCCGAGAAAAA+TGG | + | chr4_1:74564062-74564081 | None:intergenic | 45.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr4_1:74564155-74564174 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr4_1:74564164-74564183 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr4_1:74564206-74564225 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr4_1:74564352-74564371 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr4_1:74564518-74564537 | Msa0571840:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr4_1:74564529-74564548 | Msa0571840:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr4_1:74564702-74564721 | Msa0571840:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr4_1:74564749-74564768 | None:intergenic | 45.0% |
| AAAGAGGCTGCACTGTACTG+TGG | + | chr4_1:74564223-74564242 | None:intergenic | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr4_1:74564752-74564771 | Msa0571840:intron | 50.0% | |
| AAAGAGGCTGCACTGTACTG+TGG | + | chr4_1:74564223-74564242 | None:intergenic | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr4_1:74564752-74564771 | Msa0571840:intron | 50.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr4_1:74564670-74564689 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr4_1:74564669-74564688 | Msa0571840:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr4_1:74564943-74564962 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr4_1:74564944-74564963 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr4_1:74564670-74564689 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr4_1:74564669-74564688 | Msa0571840:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr4_1:74564943-74564962 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr4_1:74564944-74564963 | None:intergenic | 55.0% | |
| CAGTATCCTGCCTCTGCGCA+CGG | + | chr4_1:74563903-74563922 | None:intergenic | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr4_1:74564895-74564914 | Msa0571840:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr4_1:74564924-74564943 | Msa0571840:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr4_1:74564936-74564955 | Msa0571840:CDS | 60.0% | |
| CAGTATCCTGCCTCTGCGCA+CGG | + | chr4_1:74563903-74563922 | None:intergenic | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr4_1:74564895-74564914 | Msa0571840:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr4_1:74564924-74564943 | Msa0571840:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr4_1:74564936-74564955 | Msa0571840:CDS | 60.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr4_1:74564899-74564918 | Msa0571840:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr4_1:74564907-74564926 | None:intergenic | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr4_1:74564899-74564918 | Msa0571840:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr4_1:74564907-74564926 | None:intergenic | 65.0% | |
| GTCTCTGCAGCCGTGCGCAG+AGG | - | chr4_1:74563890-74563909 | Msa0571840:CDS | 70.0% | |
| GTCTCTGCAGCCGTGCGCAG+AGG | - | chr4_1:74563890-74563909 | Msa0571840:CDS | 70.0% | |
| CTGCAGCCGTGCGCAGAGGC+AGG | - | chr4_1:74563894-74563913 | Msa0571840:CDS | 75.0% | |
| CTGCAGCCGTGCGCAGAGGC+AGG | - | chr4_1:74563894-74563913 | Msa0571840:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74563885 | 74565466 | 74563885 | ID=Msa0571840;Name=Msa0571840 |
| chr4_1 | mRNA | 74563885 | 74565466 | 74563885 | ID=Msa0571840-mRNA-1;Parent=Msa0571840;Name=Msa0571840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|0.5|1|1|1|4|0|324 |
| chr4_1 | exon | 74563885 | 74563992 | 74563885 | ID=Msa0571840-mRNA-1:exon:25775;Parent=Msa0571840-mRNA-1 |
| chr4_1 | exon | 74564352 | 74564480 | 74564352 | ID=Msa0571840-mRNA-1:exon:25774;Parent=Msa0571840-mRNA-1 |
| chr4_1 | exon | 74564556 | 74564708 | 74564556 | ID=Msa0571840-mRNA-1:exon:25773;Parent=Msa0571840-mRNA-1 |
| chr4_1 | exon | 74564801 | 74565466 | 74564801 | ID=Msa0571840-mRNA-1:exon:25772;Parent=Msa0571840-mRNA-1 |
| chr4_1 | five_prime_UTR | 74565386 | 74565466 | 74565386 | ID=Msa0571840-mRNA-1:five_prime_utr;Parent=Msa0571840-mRNA-1 |
| chr4_1 | CDS | 74564801 | 74565385 | 74564801 | ID=Msa0571840-mRNA-1:cds;Parent=Msa0571840-mRNA-1 |
| chr4_1 | CDS | 74564556 | 74564708 | 74564556 | ID=Msa0571840-mRNA-1:cds;Parent=Msa0571840-mRNA-1 |
| chr4_1 | CDS | 74564352 | 74564480 | 74564352 | ID=Msa0571840-mRNA-1:cds;Parent=Msa0571840-mRNA-1 |
| chr4_1 | CDS | 74563885 | 74563992 | 74563885 | ID=Msa0571840-mRNA-1:cds;Parent=Msa0571840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
