Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618820 | XP_013447077.1 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618820 | A0A072TU95 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0618820 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618820 | Msa1085950 | 0.992902 | 3.600353e-196 | -8.615850e-47 |
| Msa0526440 | Msa0618820 | 0.991126 | 5.040477e-186 | -8.615850e-47 |
| Msa0571840 | Msa0618820 | 0.868449 | 6.477708e-66 | -8.615850e-47 |
| Msa0577000 | Msa0618820 | 0.975363 | 8.136881e-140 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618820 | MtrunA17_Chr8g0387241 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Msa0618820 | MtrunA17_Chr5g0397361 | 44.068 | 295 | 100 | 9 | 3 | 291 | 5 | 240 | 2.93e-56 | 182 |
| Msa0618820 | MtrunA17_Chr2g0327621 | 49.315 | 146 | 55 | 6 | 143 | 279 | 71 | 206 | 6.40e-28 | 108 |
| Msa0618820 | MtrunA17_Chr2g0311591 | 77.419 | 62 | 14 | 0 | 211 | 272 | 156 | 217 | 7.03e-25 | 101 |
| Msa0618820 | MtrunA17_Chr1g0186171 | 38.854 | 157 | 72 | 4 | 133 | 269 | 208 | 360 | 1.37e-23 | 100 |
| Msa0618820 | MtrunA17_Chr1g0168401 | 67.797 | 59 | 19 | 0 | 211 | 269 | 305 | 363 | 9.09e-22 | 95.1 |
| Msa0618820 | MtrunA17_Chr1g0147111 | 49.412 | 85 | 41 | 1 | 185 | 269 | 194 | 276 | 1.90e-21 | 92.0 |
| Msa0618820 | MtrunA17_Chr4g0030421 | 59.375 | 64 | 26 | 0 | 211 | 274 | 21 | 84 | 4.08e-20 | 84.7 |
| Msa0618820 | MtrunA17_Chr3g0126721 | 47.826 | 92 | 46 | 1 | 184 | 275 | 191 | 280 | 3.09e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618820 | AT5G41380.1 | 55.440 | 193 | 64 | 7 | 129 | 309 | 114 | 296 | 5.77e-52 | 174 |
| Msa0618820 | AT1G63820.1 | 51.397 | 179 | 56 | 5 | 167 | 314 | 115 | 293 | 3.58e-43 | 150 |
| Msa0618820 | AT3G12890.1 | 63.514 | 74 | 27 | 0 | 199 | 272 | 113 | 186 | 3.62e-24 | 99.4 |
| Msa0618820 | AT2G33350.2 | 63.768 | 69 | 24 | 1 | 202 | 269 | 286 | 354 | 2.48e-22 | 97.1 |
| Msa0618820 | AT2G33350.1 | 63.768 | 69 | 24 | 1 | 202 | 269 | 287 | 355 | 2.81e-22 | 96.7 |
| Msa0618820 | AT2G33350.4 | 63.768 | 69 | 24 | 1 | 202 | 269 | 275 | 343 | 2.96e-22 | 96.7 |
| Msa0618820 | AT2G33350.5 | 63.768 | 69 | 24 | 1 | 202 | 269 | 295 | 363 | 3.00e-22 | 96.7 |
| Msa0618820 | AT1G04500.4 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0618820 | AT1G04500.1 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0618820 | AT1G04500.3 | 68.254 | 63 | 20 | 0 | 216 | 278 | 270 | 332 | 7.83e-22 | 95.1 |
| Msa0618820 | AT5G59990.1 | 42.405 | 158 | 73 | 4 | 135 | 289 | 85 | 227 | 2.10e-20 | 89.0 |
| Msa0618820 | AT4G27900.1 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0618820 | AT4G27900.2 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0618820 | AT5G53420.2 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0618820 | AT5G53420.5 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0618820 | AT5G53420.4 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0618820 | AT5G53420.1 | 43.529 | 85 | 41 | 1 | 185 | 269 | 185 | 262 | 1.37e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTGATTCTTATTAAAA+AGG | 0.223649 | 4_2:-69783175 | Msa0618820:five_prime_UTR |
| ATGAAGACGAAGTCGATTTC+TGG | 0.227779 | 4_2:-69782113 | Msa0618820:CDS |
| GAACTTTAACAAGACTATTA+AGG | 0.296751 | 4_2:-69782316 | Msa0618820:intron |
| TGTTCTCTTGGCTCTGTACT+TGG | 0.332786 | 4_2:+69782344 | None:intergenic |
| AAAGTTCCTCTGTGTTCTCT+TGG | 0.348760 | 4_2:+69782332 | None:intergenic |
| TTGTAGCACAGGTGATTTGC+AGG | 0.358853 | 4_2:-69782562 | Msa0618820:intron |
| GTTGGTCAATTTCAGTACTT+TGG | 0.368744 | 4_2:-69781650 | Msa0618820:CDS |
| GGAAGAAAAGGTTCATCAAA+TGG | 0.376126 | 4_2:+69782951 | None:intergenic |
| CTGATTAAACATGGAGCCTT+AGG | 0.397252 | 4_2:+69782138 | None:intergenic |
| TTGGTCAATTTCAGTACTTT+GGG | 0.401778 | 4_2:-69781649 | Msa0618820:CDS |
| TTGAGAAGGGTTTGTAGCAC+AGG | 0.409705 | 4_2:-69782573 | Msa0618820:CDS |
| ATTAGTACTGTGATGAGAAT+TGG | 0.436310 | 4_2:+69783001 | None:intergenic |
| TGAAGACGAAGTCGATTTCT+GGG | 0.449240 | 4_2:-69782112 | Msa0618820:intron |
| GGGTCTAGAGAAGGAAGAAA+AGG | 0.456147 | 4_2:+69782939 | None:intergenic |
| GAAATAGTCTCTTCTAATGA+TGG | 0.462483 | 4_2:-69783068 | Msa0618820:CDS |
| AAGAATAGTGGTTACGGAGT+TGG | 0.483748 | 4_2:-69781668 | Msa0618820:CDS |
| GAAGAAAAGGTTCATCAAAT+GGG | 0.486506 | 4_2:+69782952 | None:intergenic |
| TCTTGCGAATTCCCCTCCGT+TGG | 0.487308 | 4_2:+69782423 | None:intergenic |
| TCTTCGGAACTATATTCATT+CGG | 0.490450 | 4_2:-69783122 | Msa0618820:CDS |
| GTCTCTTCTAATGATGGAAG+TGG | 0.496551 | 4_2:-69783062 | Msa0618820:CDS |
| GAACAATATCTGAAGAATAG+TGG | 0.497442 | 4_2:-69781680 | Msa0618820:CDS |
| GAGGAACAAAATTTCAAAGT+AGG | 0.499993 | 4_2:-69782402 | Msa0618820:CDS |
| CTGCAGTCGTGTGCAGAGGC+AGG | 0.500528 | 4_2:-69783197 | Msa0618820:five_prime_UTR |
| TGAGTTTGAAATAGAAAACT+AGG | 0.503168 | 4_2:+69782660 | None:intergenic |
| ATCGACCACGCGTACGTGGC+AGG | 0.512738 | 4_2:-69782191 | Msa0618820:CDS |
| TTGATTCATCGAAATTTCAA+AGG | 0.515625 | 4_2:-69782623 | Msa0618820:CDS |
| TATCTGAAGAATAGTGGTTA+CGG | 0.515829 | 4_2:-69781674 | Msa0618820:CDS |
| CCCTGAAAATAGTTTGAGAA+GGG | 0.527305 | 4_2:-69782586 | Msa0618820:CDS |
| AATAATATGTCTCCAACGGA+GGG | 0.534384 | 4_2:-69782435 | Msa0618820:CDS |
| GAGAAACTTTCATTACAAAG+AGG | 0.548482 | 4_2:+69782855 | None:intergenic |
| ATGAATCAACGAGATTATCA+TGG | 0.556874 | 4_2:+69782637 | None:intergenic |
| AAATAATATGTCTCCAACGG+AGG | 0.560154 | 4_2:-69782436 | Msa0618820:CDS |
| AGAAAATAATATGTCTCCAA+CGG | 0.563673 | 4_2:-69782439 | Msa0618820:CDS |
| CGAGCCCACGGAGATTCCTA+AGG | 0.567771 | 4_2:-69782154 | Msa0618820:CDS |
| TCTTCATCTCTGATTAAACA+TGG | 0.570013 | 4_2:+69782129 | None:intergenic |
| CCCCTGAAAATAGTTTGAGA+AGG | 0.571206 | 4_2:-69782587 | Msa0618820:CDS |
| TCATCACCACTGTAACTATG+AGG | 0.575325 | 4_2:+69782738 | None:intergenic |
| ATTAGAAGAGACTATTTCTG+AGG | 0.581489 | 4_2:+69783073 | None:intergenic |
| CACCACTGTAACTATGAGGA+AGG | 0.587875 | 4_2:+69782742 | None:intergenic |
| GTCTCTGCAGTCGTGTGCAG+AGG | 0.597260 | 4_2:-69783201 | Msa0618820:five_prime_UTR |
| TGCACGCAATGACGAGCCCA+CGG | 0.603558 | 4_2:-69782166 | Msa0618820:CDS |
| GCAAACCTGCCACGTACGCG+TGG | 0.603581 | 4_2:+69782186 | None:intergenic |
| TTCCTTCCTCATAGTTACAG+TGG | 0.611300 | 4_2:-69782744 | Msa0618820:CDS |
| GACAATCGACCACGCGTACG+TGG | 0.616500 | 4_2:-69782195 | Msa0618820:CDS |
| TTTCTGAGGTTGAATGTGTG+TGG | 0.627039 | 4_2:+69783087 | None:intergenic |
| TGATGTAGATGGAAGAATTG+CGG | 0.651165 | 4_2:-69781736 | Msa0618820:intron |
| AACGGAGGGGAATTCGCAAG+AGG | 0.653430 | 4_2:-69782421 | Msa0618820:CDS |
| ATAATATGTCTCCAACGGAG+GGG | 0.654626 | 4_2:-69782434 | Msa0618820:CDS |
| CAAAGTAGGTCGTTATAGCG+CGG | 0.657198 | 4_2:-69782388 | Msa0618820:CDS |
| CATGAAGATGATGTAACAGT+GGG | 0.675111 | 4_2:-69781710 | Msa0618820:CDS |
| GGAGCCTTAGGAATCTCCGT+GGG | 0.684622 | 4_2:+69782150 | None:intergenic |
| GCATGAAGATGATGTAACAG+TGG | 0.695685 | 4_2:-69781711 | Msa0618820:CDS |
| TGGAGCCTTAGGAATCTCCG+TGG | 0.702219 | 4_2:+69782149 | None:intergenic |
| AAAGAGGCTGCACTGCACTG+TGG | 0.704215 | 4_2:+69782871 | None:intergenic |
| TGAATGTGTGTGGAAAGTAG+TGG | 0.760361 | 4_2:+69783097 | None:intergenic |
| ACAGAGCCAAGAGAACACAG+AGG | 0.782868 | 4_2:-69782338 | Msa0618820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr4_2:69782367-69782386 | Msa0618820:CDS | 20.0% |
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr4_2:69782367-69782386 | Msa0618820:CDS | 20.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr4_2:69781674-69781693 | Msa0618820:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr4_2:69781711-69781730 | Msa0618820:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr4_2:69781933-69781952 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr4_2:69782192-69782211 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr4_2:69782226-69782245 | Msa0618820:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr4_2:69782410-69782429 | Msa0618820:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr4_2:69782533-69782552 | Msa0618820:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr4_2:69782823-69782842 | Msa0618820:CDS | 25.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr4_2:69781674-69781693 | Msa0618820:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr4_2:69781711-69781730 | Msa0618820:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr4_2:69781933-69781952 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr4_2:69782192-69782211 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr4_2:69782226-69782245 | Msa0618820:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr4_2:69782410-69782429 | Msa0618820:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr4_2:69782533-69782552 | Msa0618820:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr4_2:69782823-69782842 | Msa0618820:CDS | 25.0% |
| TCTTCGGAACTATATTCATT+CGG | - | chr4_2:69781727-69781746 | Msa0618820:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr4_2:69781779-69781798 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr4_2:69781781-69781800 | Msa0618820:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr4_2:69781840-69781859 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr4_2:69781841-69781860 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr4_2:69781851-69781870 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr4_2:69781900-69781919 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr4_2:69781934-69781953 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr4_2:69781997-69782016 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr4_2:69782026-69782045 | Msa0618820:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr4_2:69782215-69782234 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr4_2:69782447-69782466 | Msa0618820:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr4_2:69782723-69782742 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr4_2:69782882-69782901 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr4_2:69783069-69783088 | Msa0618820:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr4_2:69783070-69783089 | Msa0618820:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr4_2:69783087-69783106 | Msa0618820:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr4_2:69783169-69783188 | Msa0618820:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr4_2:69783175-69783194 | Msa0618820:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr4_2:69783200-69783219 | Msa0618820:five_prime_UTR | 30.0% | |
| TCTTCGGAACTATATTCATT+CGG | - | chr4_2:69781727-69781746 | Msa0618820:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr4_2:69781779-69781798 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr4_2:69781781-69781800 | Msa0618820:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr4_2:69781840-69781859 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr4_2:69781841-69781860 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr4_2:69781851-69781870 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr4_2:69781900-69781919 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr4_2:69781934-69781953 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr4_2:69781997-69782016 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr4_2:69782026-69782045 | Msa0618820:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr4_2:69782215-69782234 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr4_2:69782447-69782466 | Msa0618820:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr4_2:69782723-69782742 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr4_2:69782882-69782901 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr4_2:69783069-69783088 | Msa0618820:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr4_2:69783070-69783089 | Msa0618820:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr4_2:69783087-69783106 | Msa0618820:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr4_2:69783169-69783188 | Msa0618820:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr4_2:69783175-69783194 | Msa0618820:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr4_2:69783200-69783219 | Msa0618820:five_prime_UTR | 30.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr4_2:69781816-69781835 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr4_2:69781901-69781920 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr4_2:69781943-69781962 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr4_2:69782034-69782053 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr4_2:69782265-69782284 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr4_2:69782266-69782285 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr4_2:69782263-69782282 | Msa0618820:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr4_2:69782267-69782286 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr4_2:69782413-69782432 | Msa0618820:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr4_2:69782414-69782433 | Msa0618820:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr4_2:69782836-69782855 | Msa0618820:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr4_2:69783102-69783121 | Msa0618820:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr4_2:69783113-69783132 | Msa0618820:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr4_2:69783139-69783158 | Msa0618820:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr4_2:69783199-69783218 | Msa0618820:five_prime_UTR | 35.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr4_2:69781816-69781835 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr4_2:69781901-69781920 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr4_2:69781943-69781962 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr4_2:69782034-69782053 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr4_2:69782265-69782284 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr4_2:69782266-69782285 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr4_2:69782263-69782282 | Msa0618820:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr4_2:69782267-69782286 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr4_2:69782413-69782432 | Msa0618820:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr4_2:69782414-69782433 | Msa0618820:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr4_2:69782836-69782855 | Msa0618820:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr4_2:69783102-69783121 | Msa0618820:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr4_2:69783113-69783132 | Msa0618820:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr4_2:69783139-69783158 | Msa0618820:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr4_2:69783199-69783218 | Msa0618820:five_prime_UTR | 35.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr4_2:69781755-69781774 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr4_2:69781765-69781784 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr4_2:69781787-69781806 | Msa0618820:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr4_2:69781820-69781839 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr4_2:69782035-69782054 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr4_2:69782105-69782124 | Msa0618820:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr4_2:69782114-69782133 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr4_2:69782262-69782281 | Msa0618820:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr4_2:69782415-69782434 | Msa0618820:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr4_2:69782520-69782539 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr4_2:69782714-69782733 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr4_2:69782736-69782755 | Msa0618820:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr4_2:69782737-69782756 | Msa0618820:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr4_2:69783138-69783157 | Msa0618820:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr4_2:69783181-69783200 | Msa0618820:five_prime_UTR | 40.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr4_2:69781755-69781774 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr4_2:69781765-69781784 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr4_2:69781787-69781806 | Msa0618820:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr4_2:69781820-69781839 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr4_2:69782035-69782054 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr4_2:69782105-69782124 | Msa0618820:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr4_2:69782114-69782133 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr4_2:69782262-69782281 | Msa0618820:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr4_2:69782415-69782434 | Msa0618820:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr4_2:69782520-69782539 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr4_2:69782714-69782733 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr4_2:69782736-69782755 | Msa0618820:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr4_2:69782737-69782756 | Msa0618820:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr4_2:69783138-69783157 | Msa0618820:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr4_2:69783181-69783200 | Msa0618820:five_prime_UTR | 40.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr4_2:69781913-69781932 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr4_2:69781922-69781941 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr4_2:69781964-69781983 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr4_2:69781967-69781986 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr4_2:69782110-69782129 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr4_2:69782276-69782295 | Msa0618820:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr4_2:69782287-69782306 | Msa0618820:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr4_2:69782461-69782480 | Msa0618820:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr4_2:69782508-69782527 | None:intergenic | 45.0% |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr4_2:69781913-69781932 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr4_2:69781922-69781941 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr4_2:69781964-69781983 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr4_2:69781967-69781986 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr4_2:69782110-69782129 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr4_2:69782276-69782295 | Msa0618820:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr4_2:69782287-69782306 | Msa0618820:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr4_2:69782461-69782480 | Msa0618820:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr4_2:69782508-69782527 | None:intergenic | 45.0% |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr4_2:69782511-69782530 | Msa0618820:intron | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr4_2:69782511-69782530 | Msa0618820:intron | 50.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr4_2:69781981-69782000 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr4_2:69782429-69782448 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr4_2:69782428-69782447 | Msa0618820:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr4_2:69782702-69782721 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr4_2:69782703-69782722 | None:intergenic | 55.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr4_2:69781981-69782000 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr4_2:69782429-69782448 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr4_2:69782428-69782447 | Msa0618820:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr4_2:69782702-69782721 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr4_2:69782703-69782722 | None:intergenic | 55.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr4_2:69781648-69781667 | Msa0618820:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr4_2:69782654-69782673 | Msa0618820:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr4_2:69782683-69782702 | Msa0618820:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr4_2:69782695-69782714 | Msa0618820:CDS | 60.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr4_2:69781648-69781667 | Msa0618820:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr4_2:69782654-69782673 | Msa0618820:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr4_2:69782683-69782702 | Msa0618820:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr4_2:69782695-69782714 | Msa0618820:CDS | 60.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr4_2:69781652-69781671 | Msa0618820:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr4_2:69782658-69782677 | Msa0618820:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr4_2:69782666-69782685 | None:intergenic | 65.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr4_2:69781652-69781671 | Msa0618820:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr4_2:69782658-69782677 | Msa0618820:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr4_2:69782666-69782685 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69781643 | 69783228 | 69781643 | ID=Msa0618820;Name=Msa0618820 |
| chr4_2 | mRNA | 69781643 | 69783228 | 69781643 | ID=Msa0618820-mRNA-1;Parent=Msa0618820;Name=Msa0618820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=81|1|0.5|1|1|1|4|0|324 |
| chr4_2 | exon | 69781643 | 69781750 | 69781643 | ID=Msa0618820-mRNA-1:exon:20197;Parent=Msa0618820-mRNA-1 |
| chr4_2 | exon | 69782113 | 69782241 | 69782113 | ID=Msa0618820-mRNA-1:exon:20196;Parent=Msa0618820-mRNA-1 |
| chr4_2 | exon | 69782317 | 69782469 | 69782317 | ID=Msa0618820-mRNA-1:exon:20195;Parent=Msa0618820-mRNA-1 |
| chr4_2 | exon | 69782563 | 69783228 | 69782563 | ID=Msa0618820-mRNA-1:exon:20194;Parent=Msa0618820-mRNA-1 |
| chr4_2 | five_prime_UTR | 69783148 | 69783228 | 69783148 | ID=Msa0618820-mRNA-1:five_prime_utr;Parent=Msa0618820-mRNA-1 |
| chr4_2 | CDS | 69782563 | 69783147 | 69782563 | ID=Msa0618820-mRNA-1:cds;Parent=Msa0618820-mRNA-1 |
| chr4_2 | CDS | 69782317 | 69782469 | 69782317 | ID=Msa0618820-mRNA-1:cds;Parent=Msa0618820-mRNA-1 |
| chr4_2 | CDS | 69782113 | 69782241 | 69782113 | ID=Msa0618820-mRNA-1:cds;Parent=Msa0618820-mRNA-1 |
| chr4_2 | CDS | 69781643 | 69781750 | 69781643 | ID=Msa0618820-mRNA-1:cds;Parent=Msa0618820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
