Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577000 | XP_013447077.1 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577000 | A0A072TU95 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0577000 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0526440 | Msa0577000 | 0.977455 | 8.145245e-144 | -8.615850e-47 |
| Msa0571840 | Msa0577000 | 0.872133 | 4.018409e-67 | -8.615850e-47 |
| Msa0577000 | Msa0618820 | 0.975363 | 8.136881e-140 | -8.615850e-47 |
| Msa0577000 | Msa1085950 | 0.978930 | 7.217690e-147 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577000 | MtrunA17_Chr8g0387241 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Msa0577000 | MtrunA17_Chr5g0397361 | 44.068 | 295 | 100 | 9 | 3 | 291 | 5 | 240 | 2.93e-56 | 182 |
| Msa0577000 | MtrunA17_Chr2g0327621 | 49.315 | 146 | 55 | 6 | 143 | 279 | 71 | 206 | 6.40e-28 | 108 |
| Msa0577000 | MtrunA17_Chr2g0311591 | 77.419 | 62 | 14 | 0 | 211 | 272 | 156 | 217 | 7.03e-25 | 101 |
| Msa0577000 | MtrunA17_Chr1g0186171 | 38.854 | 157 | 72 | 4 | 133 | 269 | 208 | 360 | 1.37e-23 | 100 |
| Msa0577000 | MtrunA17_Chr1g0168401 | 67.797 | 59 | 19 | 0 | 211 | 269 | 305 | 363 | 9.09e-22 | 95.1 |
| Msa0577000 | MtrunA17_Chr1g0147111 | 49.412 | 85 | 41 | 1 | 185 | 269 | 194 | 276 | 1.90e-21 | 92.0 |
| Msa0577000 | MtrunA17_Chr4g0030421 | 59.375 | 64 | 26 | 0 | 211 | 274 | 21 | 84 | 4.08e-20 | 84.7 |
| Msa0577000 | MtrunA17_Chr3g0126721 | 47.826 | 92 | 46 | 1 | 184 | 275 | 191 | 280 | 3.09e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577000 | AT5G41380.1 | 55.440 | 193 | 64 | 7 | 129 | 309 | 114 | 296 | 5.77e-52 | 174 |
| Msa0577000 | AT1G63820.1 | 51.397 | 179 | 56 | 5 | 167 | 314 | 115 | 293 | 3.58e-43 | 150 |
| Msa0577000 | AT3G12890.1 | 63.514 | 74 | 27 | 0 | 199 | 272 | 113 | 186 | 3.62e-24 | 99.4 |
| Msa0577000 | AT2G33350.2 | 63.768 | 69 | 24 | 1 | 202 | 269 | 286 | 354 | 2.48e-22 | 97.1 |
| Msa0577000 | AT2G33350.1 | 63.768 | 69 | 24 | 1 | 202 | 269 | 287 | 355 | 2.81e-22 | 96.7 |
| Msa0577000 | AT2G33350.4 | 63.768 | 69 | 24 | 1 | 202 | 269 | 275 | 343 | 2.96e-22 | 96.7 |
| Msa0577000 | AT2G33350.5 | 63.768 | 69 | 24 | 1 | 202 | 269 | 295 | 363 | 3.00e-22 | 96.7 |
| Msa0577000 | AT1G04500.4 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0577000 | AT1G04500.1 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa0577000 | AT1G04500.3 | 68.254 | 63 | 20 | 0 | 216 | 278 | 270 | 332 | 7.83e-22 | 95.1 |
| Msa0577000 | AT5G59990.1 | 42.405 | 158 | 73 | 4 | 135 | 289 | 85 | 227 | 2.10e-20 | 89.0 |
| Msa0577000 | AT4G27900.1 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0577000 | AT4G27900.2 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa0577000 | AT5G53420.2 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0577000 | AT5G53420.5 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0577000 | AT5G53420.4 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa0577000 | AT5G53420.1 | 43.529 | 85 | 41 | 1 | 185 | 269 | 185 | 262 | 1.37e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTGATTCTTATTAAAA+AGG | 0.223649 | 4_1:+81175490 | Msa0577000:five_prime_UTR |
| ATGAAGACGAAGTCGATTTC+TGG | 0.227779 | 4_1:+81176551 | Msa0577000:CDS |
| GAACTTTAACAAGACTATTA+AGG | 0.296751 | 4_1:+81176348 | Msa0577000:CDS |
| TGTTCTCTTGGCTCTGTACT+TGG | 0.332786 | 4_1:-81176320 | None:intergenic |
| AAAGTTCCTCTGTGTTCTCT+TGG | 0.348760 | 4_1:-81176332 | None:intergenic |
| TTGTAGCACAGGTGATTTGC+AGG | 0.358853 | 4_1:+81176103 | Msa0577000:CDS |
| GTTGGTCAATTTCAGTACTT+TGG | 0.368744 | 4_1:+81177015 | Msa0577000:CDS |
| GGAAGAAAAGGTTCATCAAA+TGG | 0.376126 | 4_1:-81175714 | None:intergenic |
| CTGATTAAACATGGAGCCTT+AGG | 0.397252 | 4_1:-81176526 | None:intergenic |
| TTGGTCAATTTCAGTACTTT+GGG | 0.401778 | 4_1:+81177016 | Msa0577000:CDS |
| TTGAGAAGGGTTTGTAGCAC+AGG | 0.409705 | 4_1:+81176092 | Msa0577000:CDS |
| ATTAGTACTGTGATGAGAAT+TGG | 0.436310 | 4_1:-81175664 | None:intergenic |
| TGAAGACGAAGTCGATTTCT+GGG | 0.449240 | 4_1:+81176552 | Msa0577000:CDS |
| GGGTCTAGAGAAGGAAGAAA+AGG | 0.456147 | 4_1:-81175726 | None:intergenic |
| GAAATAGTCTCTTCTAATGA+TGG | 0.462483 | 4_1:+81175597 | Msa0577000:CDS |
| AAGAATAGTGGTTACGGAGT+TGG | 0.483748 | 4_1:+81176997 | Msa0577000:CDS |
| GAAGAAAAGGTTCATCAAAT+GGG | 0.486506 | 4_1:-81175713 | None:intergenic |
| TCTTGCGAATTCCCCTCCGT+TGG | 0.487308 | 4_1:-81176241 | None:intergenic |
| TCTTCGGAACTATATTCATT+CGG | 0.490450 | 4_1:+81175543 | Msa0577000:CDS |
| GTCTCTTCTAATGATGGAAG+TGG | 0.496551 | 4_1:+81175603 | Msa0577000:CDS |
| GAACAATATCTGAAGAATAG+TGG | 0.497442 | 4_1:+81176985 | Msa0577000:CDS |
| GAGGAACAAAATTTCAAAGT+AGG | 0.499993 | 4_1:+81176262 | Msa0577000:CDS |
| CTGCAGTCGTGTGCAGAGGC+AGG | 0.500528 | 4_1:+81175468 | Msa0577000:five_prime_UTR |
| TGAGTTTGAAATAGAAAACT+AGG | 0.503168 | 4_1:-81176005 | None:intergenic |
| ATCGACCACGCGTACGTGGC+AGG | 0.512738 | 4_1:+81176473 | Msa0577000:CDS |
| TTGATTCATCGAAATTTCAA+AGG | 0.515625 | 4_1:+81176042 | Msa0577000:CDS |
| TATCTGAAGAATAGTGGTTA+CGG | 0.515829 | 4_1:+81176991 | Msa0577000:CDS |
| CCCTGAAAATAGTTTGAGAA+GGG | 0.527305 | 4_1:+81176079 | Msa0577000:CDS |
| AATAATATGTCTCCAACGGA+GGG | 0.534384 | 4_1:+81176229 | Msa0577000:CDS |
| GAGAAACTTTCATTACAAAG+AGG | 0.548482 | 4_1:-81175810 | None:intergenic |
| ATGAATCAACGAGATTATCA+TGG | 0.556874 | 4_1:-81176028 | None:intergenic |
| AAATAATATGTCTCCAACGG+AGG | 0.560154 | 4_1:+81176228 | Msa0577000:CDS |
| AGAAAATAATATGTCTCCAA+CGG | 0.563673 | 4_1:+81176225 | Msa0577000:CDS |
| CGAGCCCACGGAGATTCCTA+AGG | 0.567771 | 4_1:+81176510 | Msa0577000:CDS |
| TCTTCATCTCTGATTAAACA+TGG | 0.570013 | 4_1:-81176535 | None:intergenic |
| CCCCTGAAAATAGTTTGAGA+AGG | 0.571206 | 4_1:+81176078 | Msa0577000:CDS |
| TCATCACCACTGTAACTATG+AGG | 0.575325 | 4_1:-81175927 | None:intergenic |
| ATTAGAAGAGACTATTTCTG+AGG | 0.581489 | 4_1:-81175592 | None:intergenic |
| CACCACTGTAACTATGAGGA+AGG | 0.587875 | 4_1:-81175923 | None:intergenic |
| GTCTCTGCAGTCGTGTGCAG+AGG | 0.597260 | 4_1:+81175464 | Msa0577000:five_prime_UTR |
| TGCACGCAATGACGAGCCCA+CGG | 0.603558 | 4_1:+81176498 | Msa0577000:CDS |
| GCAAACCTGCCACGTACGCG+TGG | 0.603581 | 4_1:-81176478 | None:intergenic |
| TTCCTTCCTCATAGTTACAG+TGG | 0.611300 | 4_1:+81175921 | Msa0577000:CDS |
| GACAATCGACCACGCGTACG+TGG | 0.616500 | 4_1:+81176469 | Msa0577000:CDS |
| TTTCTGAGGTTGAATGTGTG+TGG | 0.627039 | 4_1:-81175578 | None:intergenic |
| TGATGTAGATGGAAGAATTG+CGG | 0.651165 | 4_1:+81176929 | Msa0577000:intron |
| AACGGAGGGGAATTCGCAAG+AGG | 0.653430 | 4_1:+81176243 | Msa0577000:CDS |
| ATAATATGTCTCCAACGGAG+GGG | 0.654626 | 4_1:+81176230 | Msa0577000:CDS |
| CAAAGTAGGTCGTTATAGCG+CGG | 0.657198 | 4_1:+81176276 | Msa0577000:CDS |
| CATGAAGATGATGTAACAGT+GGG | 0.675111 | 4_1:+81176955 | Msa0577000:CDS |
| GGAGCCTTAGGAATCTCCGT+GGG | 0.684622 | 4_1:-81176514 | None:intergenic |
| GCATGAAGATGATGTAACAG+TGG | 0.695685 | 4_1:+81176954 | Msa0577000:CDS |
| TGGAGCCTTAGGAATCTCCG+TGG | 0.702219 | 4_1:-81176515 | None:intergenic |
| AAAGAGGCTGCACTGCACTG+TGG | 0.704215 | 4_1:-81175794 | None:intergenic |
| TGAATGTGTGTGGAAAGTAG+TGG | 0.760361 | 4_1:-81175568 | None:intergenic |
| ACAGAGCCAAGAGAACACAG+AGG | 0.782868 | 4_1:+81176326 | Msa0577000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATTGAAGTTTGTTT+TGG | + | chr4_1:81176182-81176201 | Msa0577000:intron | 20.0% |
| !!! | GATTTTATTGAAGTTTGTTT+TGG | + | chr4_1:81176182-81176201 | Msa0577000:intron | 20.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | + | chr4_1:81175490-81175509 | Msa0577000:five_prime_UTR | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | + | chr4_1:81175527-81175546 | Msa0577000:exon | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | - | chr4_1:81175749-81175768 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | - | chr4_1:81176008-81176027 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | + | chr4_1:81176042-81176061 | Msa0577000:CDS | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | + | chr4_1:81176225-81176244 | Msa0577000:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | + | chr4_1:81176348-81176367 | Msa0577000:CDS | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | + | chr4_1:81176638-81176657 | Msa0577000:intron | 25.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | + | chr4_1:81175490-81175509 | Msa0577000:five_prime_UTR | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | + | chr4_1:81175527-81175546 | Msa0577000:exon | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | - | chr4_1:81175749-81175768 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | - | chr4_1:81176008-81176027 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | + | chr4_1:81176042-81176061 | Msa0577000:CDS | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | + | chr4_1:81176225-81176244 | Msa0577000:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | + | chr4_1:81176348-81176367 | Msa0577000:CDS | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | + | chr4_1:81176638-81176657 | Msa0577000:intron | 25.0% |
| TCTTCGGAACTATATTCATT+CGG | + | chr4_1:81175543-81175562 | Msa0577000:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | - | chr4_1:81175595-81175614 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | + | chr4_1:81175597-81175616 | Msa0577000:CDS | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | - | chr4_1:81175656-81175675 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | - | chr4_1:81175657-81175676 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | - | chr4_1:81175667-81175686 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | - | chr4_1:81175716-81175735 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | - | chr4_1:81175750-81175769 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | - | chr4_1:81175813-81175832 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | + | chr4_1:81175842-81175861 | Msa0577000:CDS | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | - | chr4_1:81176031-81176050 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | + | chr4_1:81176262-81176281 | Msa0577000:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | - | chr4_1:81176538-81176557 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | - | chr4_1:81176697-81176716 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | + | chr4_1:81176885-81176904 | Msa0577000:intron | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | + | chr4_1:81176886-81176905 | Msa0577000:intron | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | + | chr4_1:81176903-81176922 | Msa0577000:intron | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | + | chr4_1:81176985-81177004 | Msa0577000:CDS | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | + | chr4_1:81176991-81177010 | Msa0577000:CDS | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | + | chr4_1:81177016-81177035 | Msa0577000:CDS | 30.0% | |
| TCTTCGGAACTATATTCATT+CGG | + | chr4_1:81175543-81175562 | Msa0577000:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | - | chr4_1:81175595-81175614 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | + | chr4_1:81175597-81175616 | Msa0577000:CDS | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | - | chr4_1:81175656-81175675 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | - | chr4_1:81175657-81175676 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | - | chr4_1:81175667-81175686 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | - | chr4_1:81175716-81175735 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | - | chr4_1:81175750-81175769 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | - | chr4_1:81175813-81175832 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | + | chr4_1:81175842-81175861 | Msa0577000:CDS | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | - | chr4_1:81176031-81176050 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | + | chr4_1:81176262-81176281 | Msa0577000:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | - | chr4_1:81176538-81176557 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | - | chr4_1:81176697-81176716 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | + | chr4_1:81176885-81176904 | Msa0577000:intron | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | + | chr4_1:81176886-81176905 | Msa0577000:intron | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | + | chr4_1:81176903-81176922 | Msa0577000:intron | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | + | chr4_1:81176985-81177004 | Msa0577000:CDS | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | + | chr4_1:81176991-81177010 | Msa0577000:CDS | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | + | chr4_1:81177016-81177035 | Msa0577000:CDS | 30.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | - | chr4_1:81175632-81175651 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | - | chr4_1:81175717-81175736 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | - | chr4_1:81175759-81175778 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | - | chr4_1:81175850-81175869 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | - | chr4_1:81176081-81176100 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | - | chr4_1:81176082-81176101 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | + | chr4_1:81176079-81176098 | Msa0577000:CDS | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | - | chr4_1:81176083-81176102 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | + | chr4_1:81176228-81176247 | Msa0577000:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | + | chr4_1:81176229-81176248 | Msa0577000:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | + | chr4_1:81176651-81176670 | Msa0577000:intron | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | + | chr4_1:81176918-81176937 | Msa0577000:intron | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | + | chr4_1:81176929-81176948 | Msa0577000:intron | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | + | chr4_1:81176955-81176974 | Msa0577000:CDS | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | + | chr4_1:81177015-81177034 | Msa0577000:CDS | 35.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | - | chr4_1:81175632-81175651 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | - | chr4_1:81175717-81175736 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | - | chr4_1:81175759-81175778 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | - | chr4_1:81175850-81175869 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | - | chr4_1:81176081-81176100 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | - | chr4_1:81176082-81176101 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | + | chr4_1:81176079-81176098 | Msa0577000:CDS | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | - | chr4_1:81176083-81176102 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | + | chr4_1:81176228-81176247 | Msa0577000:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | + | chr4_1:81176229-81176248 | Msa0577000:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | + | chr4_1:81176651-81176670 | Msa0577000:intron | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | + | chr4_1:81176918-81176937 | Msa0577000:intron | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | + | chr4_1:81176929-81176948 | Msa0577000:intron | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | + | chr4_1:81176955-81176974 | Msa0577000:CDS | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | + | chr4_1:81177015-81177034 | Msa0577000:CDS | 35.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | - | chr4_1:81175571-81175590 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | - | chr4_1:81175581-81175600 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | + | chr4_1:81175603-81175622 | Msa0577000:CDS | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | - | chr4_1:81175636-81175655 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | - | chr4_1:81175851-81175870 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | + | chr4_1:81175921-81175940 | Msa0577000:CDS | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | - | chr4_1:81175930-81175949 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | + | chr4_1:81176078-81176097 | Msa0577000:CDS | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | + | chr4_1:81176230-81176249 | Msa0577000:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | - | chr4_1:81176335-81176354 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | - | chr4_1:81176529-81176548 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | + | chr4_1:81176551-81176570 | Msa0577000:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | + | chr4_1:81176552-81176571 | Msa0577000:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | + | chr4_1:81176954-81176973 | Msa0577000:CDS | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | + | chr4_1:81176997-81177016 | Msa0577000:CDS | 40.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | - | chr4_1:81175571-81175590 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | - | chr4_1:81175581-81175600 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | + | chr4_1:81175603-81175622 | Msa0577000:CDS | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | - | chr4_1:81175636-81175655 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | - | chr4_1:81175851-81175870 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | + | chr4_1:81175921-81175940 | Msa0577000:CDS | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | - | chr4_1:81175930-81175949 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | + | chr4_1:81176078-81176097 | Msa0577000:CDS | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | + | chr4_1:81176230-81176249 | Msa0577000:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | - | chr4_1:81176335-81176354 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | - | chr4_1:81176529-81176548 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | + | chr4_1:81176551-81176570 | Msa0577000:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | + | chr4_1:81176552-81176571 | Msa0577000:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | + | chr4_1:81176954-81176973 | Msa0577000:CDS | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | + | chr4_1:81176997-81177016 | Msa0577000:CDS | 40.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | - | chr4_1:81175729-81175748 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | - | chr4_1:81175738-81175757 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | - | chr4_1:81175780-81175799 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | - | chr4_1:81175783-81175802 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | - | chr4_1:81175926-81175945 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | + | chr4_1:81176092-81176111 | Msa0577000:CDS | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | + | chr4_1:81176103-81176122 | Msa0577000:CDS | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | + | chr4_1:81176276-81176295 | Msa0577000:CDS | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | - | chr4_1:81176323-81176342 | None:intergenic | 45.0% |
| GGGTCTAGAGAAGGAAGAAA+AGG | - | chr4_1:81175729-81175748 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | - | chr4_1:81175738-81175757 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | - | chr4_1:81175780-81175799 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | - | chr4_1:81175783-81175802 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | - | chr4_1:81175926-81175945 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | + | chr4_1:81176092-81176111 | Msa0577000:CDS | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | + | chr4_1:81176103-81176122 | Msa0577000:CDS | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | + | chr4_1:81176276-81176295 | Msa0577000:CDS | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | - | chr4_1:81176323-81176342 | None:intergenic | 45.0% |
| ACAGAGCCAAGAGAACACAG+AGG | + | chr4_1:81176326-81176345 | Msa0577000:CDS | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | + | chr4_1:81176326-81176345 | Msa0577000:CDS | 50.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | - | chr4_1:81175797-81175816 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | - | chr4_1:81176244-81176263 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | + | chr4_1:81176243-81176262 | Msa0577000:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | - | chr4_1:81176517-81176536 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | - | chr4_1:81176518-81176537 | None:intergenic | 55.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | - | chr4_1:81175797-81175816 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | - | chr4_1:81176244-81176263 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | + | chr4_1:81176243-81176262 | Msa0577000:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | - | chr4_1:81176517-81176536 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | - | chr4_1:81176518-81176537 | None:intergenic | 55.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | + | chr4_1:81175464-81175483 | Msa0577000:five_prime_UTR | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | + | chr4_1:81176469-81176488 | Msa0577000:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | + | chr4_1:81176498-81176517 | Msa0577000:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | + | chr4_1:81176510-81176529 | Msa0577000:CDS | 60.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | + | chr4_1:81175464-81175483 | Msa0577000:five_prime_UTR | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | + | chr4_1:81176469-81176488 | Msa0577000:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | + | chr4_1:81176498-81176517 | Msa0577000:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | + | chr4_1:81176510-81176529 | Msa0577000:CDS | 60.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | + | chr4_1:81175468-81175487 | Msa0577000:five_prime_UTR | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | + | chr4_1:81176473-81176492 | Msa0577000:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | - | chr4_1:81176481-81176500 | None:intergenic | 65.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | + | chr4_1:81175468-81175487 | Msa0577000:five_prime_UTR | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | + | chr4_1:81176473-81176492 | Msa0577000:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | - | chr4_1:81176481-81176500 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81175459 | 81177044 | 81175459 | ID=Msa0577000;Name=Msa0577000 |
| chr4_1 | mRNA | 81175459 | 81177044 | 81175459 | ID=Msa0577000-mRNA-1;Parent=Msa0577000;Name=Msa0577000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|0.5|1|1|1|4|0|324 |
| chr4_1 | exon | 81175459 | 81176124 | 81175459 | ID=Msa0577000-mRNA-1:exon:29214;Parent=Msa0577000-mRNA-1 |
| chr4_1 | exon | 81176217 | 81176369 | 81176217 | ID=Msa0577000-mRNA-1:exon:29215;Parent=Msa0577000-mRNA-1 |
| chr4_1 | exon | 81176445 | 81176573 | 81176445 | ID=Msa0577000-mRNA-1:exon:29216;Parent=Msa0577000-mRNA-1 |
| chr4_1 | exon | 81176937 | 81177044 | 81176937 | ID=Msa0577000-mRNA-1:exon:29217;Parent=Msa0577000-mRNA-1 |
| chr4_1 | five_prime_UTR | 81175459 | 81175539 | 81175459 | ID=Msa0577000-mRNA-1:five_prime_utr;Parent=Msa0577000-mRNA-1 |
| chr4_1 | CDS | 81175540 | 81176124 | 81175540 | ID=Msa0577000-mRNA-1:cds;Parent=Msa0577000-mRNA-1 |
| chr4_1 | CDS | 81176217 | 81176369 | 81176217 | ID=Msa0577000-mRNA-1:cds;Parent=Msa0577000-mRNA-1 |
| chr4_1 | CDS | 81176445 | 81176573 | 81176445 | ID=Msa0577000-mRNA-1:cds;Parent=Msa0577000-mRNA-1 |
| chr4_1 | CDS | 81176937 | 81177044 | 81176937 | ID=Msa0577000-mRNA-1:cds;Parent=Msa0577000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
