Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085950 | XP_013447077.1 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085950 | A0A072TU95 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1085950 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618820 | Msa1085950 | 0.992902 | 3.600353e-196 | -8.615850e-47 |
| Msa0526440 | Msa1085950 | 0.995237 | 2.633366e-214 | -8.615850e-47 |
| Msa0571840 | Msa1085950 | 0.863516 | 2.354206e-64 | -8.615850e-47 |
| Msa0577000 | Msa1085950 | 0.978930 | 7.217690e-147 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085950 | MtrunA17_Chr8g0387241 | 98.457 | 324 | 5 | 0 | 1 | 324 | 1 | 324 | 0.0 | 660 |
| Msa1085950 | MtrunA17_Chr5g0397361 | 44.068 | 295 | 100 | 9 | 3 | 291 | 5 | 240 | 2.93e-56 | 182 |
| Msa1085950 | MtrunA17_Chr2g0327621 | 49.315 | 146 | 55 | 6 | 143 | 279 | 71 | 206 | 6.40e-28 | 108 |
| Msa1085950 | MtrunA17_Chr2g0311591 | 77.419 | 62 | 14 | 0 | 211 | 272 | 156 | 217 | 7.03e-25 | 101 |
| Msa1085950 | MtrunA17_Chr1g0186171 | 38.854 | 157 | 72 | 4 | 133 | 269 | 208 | 360 | 1.37e-23 | 100 |
| Msa1085950 | MtrunA17_Chr1g0168401 | 67.797 | 59 | 19 | 0 | 211 | 269 | 305 | 363 | 9.09e-22 | 95.1 |
| Msa1085950 | MtrunA17_Chr1g0147111 | 49.412 | 85 | 41 | 1 | 185 | 269 | 194 | 276 | 1.90e-21 | 92.0 |
| Msa1085950 | MtrunA17_Chr4g0030421 | 59.375 | 64 | 26 | 0 | 211 | 274 | 21 | 84 | 4.08e-20 | 84.7 |
| Msa1085950 | MtrunA17_Chr3g0126721 | 47.826 | 92 | 46 | 1 | 184 | 275 | 191 | 280 | 3.09e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085950 | AT5G41380.1 | 55.440 | 193 | 64 | 7 | 129 | 309 | 114 | 296 | 5.77e-52 | 174 |
| Msa1085950 | AT1G63820.1 | 51.397 | 179 | 56 | 5 | 167 | 314 | 115 | 293 | 3.58e-43 | 150 |
| Msa1085950 | AT3G12890.1 | 63.514 | 74 | 27 | 0 | 199 | 272 | 113 | 186 | 3.62e-24 | 99.4 |
| Msa1085950 | AT2G33350.2 | 63.768 | 69 | 24 | 1 | 202 | 269 | 286 | 354 | 2.48e-22 | 97.1 |
| Msa1085950 | AT2G33350.1 | 63.768 | 69 | 24 | 1 | 202 | 269 | 287 | 355 | 2.81e-22 | 96.7 |
| Msa1085950 | AT2G33350.4 | 63.768 | 69 | 24 | 1 | 202 | 269 | 275 | 343 | 2.96e-22 | 96.7 |
| Msa1085950 | AT2G33350.5 | 63.768 | 69 | 24 | 1 | 202 | 269 | 295 | 363 | 3.00e-22 | 96.7 |
| Msa1085950 | AT1G04500.4 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa1085950 | AT1G04500.1 | 68.254 | 63 | 20 | 0 | 216 | 278 | 279 | 341 | 6.50e-22 | 95.5 |
| Msa1085950 | AT1G04500.3 | 68.254 | 63 | 20 | 0 | 216 | 278 | 270 | 332 | 7.83e-22 | 95.1 |
| Msa1085950 | AT5G59990.1 | 42.405 | 158 | 73 | 4 | 135 | 289 | 85 | 227 | 2.10e-20 | 89.0 |
| Msa1085950 | AT4G27900.1 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa1085950 | AT4G27900.2 | 43.529 | 85 | 44 | 1 | 185 | 269 | 178 | 258 | 1.03e-17 | 81.6 |
| Msa1085950 | AT5G53420.2 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa1085950 | AT5G53420.5 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa1085950 | AT5G53420.4 | 43.529 | 85 | 41 | 1 | 185 | 269 | 106 | 183 | 1.08e-16 | 77.4 |
| Msa1085950 | AT5G53420.1 | 43.529 | 85 | 41 | 1 | 185 | 269 | 185 | 262 | 1.37e-16 | 78.6 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTGATTCTTATTAAAA+AGG | 0.223649 | 7_2:-86962761 | Msa1085950:five_prime_UTR |
| ATGAAGACGAAGTCGATTTC+TGG | 0.227779 | 7_2:-86961700 | Msa1085950:CDS |
| GAACTTTAACAAGACTATTA+AGG | 0.296751 | 7_2:-86961903 | Msa1085950:intron |
| TGTTCTCTTGGCTCTGTACT+TGG | 0.332786 | 7_2:+86961931 | None:intergenic |
| AAAGTTCCTCTGTGTTCTCT+TGG | 0.348760 | 7_2:+86961919 | None:intergenic |
| TTGTAGCACAGGTGATTTGC+AGG | 0.358853 | 7_2:-86962148 | Msa1085950:intron |
| GTTGGTCAATTTCAGTACTT+TGG | 0.368744 | 7_2:-86961237 | Msa1085950:CDS |
| GGAAGAAAAGGTTCATCAAA+TGG | 0.376126 | 7_2:+86962537 | None:intergenic |
| CTGATTAAACATGGAGCCTT+AGG | 0.397252 | 7_2:+86961725 | None:intergenic |
| TTGGTCAATTTCAGTACTTT+GGG | 0.401778 | 7_2:-86961236 | Msa1085950:CDS |
| TTGAGAAGGGTTTGTAGCAC+AGG | 0.409705 | 7_2:-86962159 | Msa1085950:CDS |
| ATTAGTACTGTGATGAGAAT+TGG | 0.436310 | 7_2:+86962587 | None:intergenic |
| TGAAGACGAAGTCGATTTCT+GGG | 0.449240 | 7_2:-86961699 | Msa1085950:intron |
| GGGTCTAGAGAAGGAAGAAA+AGG | 0.456147 | 7_2:+86962525 | None:intergenic |
| GAAATAGTCTCTTCTAATGA+TGG | 0.462483 | 7_2:-86962654 | Msa1085950:CDS |
| AAGAATAGTGGTTACGGAGT+TGG | 0.483748 | 7_2:-86961255 | Msa1085950:CDS |
| GAAGAAAAGGTTCATCAAAT+GGG | 0.486506 | 7_2:+86962538 | None:intergenic |
| TCTTGCGAATTCCCCTCCGT+TGG | 0.487308 | 7_2:+86962010 | None:intergenic |
| TCTTCGGAACTATATTCATT+CGG | 0.490450 | 7_2:-86962708 | Msa1085950:CDS |
| GTCTCTTCTAATGATGGAAG+TGG | 0.496551 | 7_2:-86962648 | Msa1085950:CDS |
| GAACAATATCTGAAGAATAG+TGG | 0.497442 | 7_2:-86961267 | Msa1085950:CDS |
| GAGGAACAAAATTTCAAAGT+AGG | 0.499993 | 7_2:-86961989 | Msa1085950:CDS |
| CTGCAGTCGTGTGCAGAGGC+AGG | 0.500528 | 7_2:-86962783 | Msa1085950:five_prime_UTR |
| TGAGTTTGAAATAGAAAACT+AGG | 0.503168 | 7_2:+86962246 | None:intergenic |
| ATCGACCACGCGTACGTGGC+AGG | 0.512738 | 7_2:-86961778 | Msa1085950:CDS |
| TTGATTCATCGAAATTTCAA+AGG | 0.515625 | 7_2:-86962209 | Msa1085950:CDS |
| TATCTGAAGAATAGTGGTTA+CGG | 0.515829 | 7_2:-86961261 | Msa1085950:CDS |
| CCCTGAAAATAGTTTGAGAA+GGG | 0.527305 | 7_2:-86962172 | Msa1085950:CDS |
| AATAATATGTCTCCAACGGA+GGG | 0.534384 | 7_2:-86962022 | Msa1085950:CDS |
| GAGAAACTTTCATTACAAAG+AGG | 0.548482 | 7_2:+86962441 | None:intergenic |
| ATGAATCAACGAGATTATCA+TGG | 0.556874 | 7_2:+86962223 | None:intergenic |
| AAATAATATGTCTCCAACGG+AGG | 0.560154 | 7_2:-86962023 | Msa1085950:CDS |
| AGAAAATAATATGTCTCCAA+CGG | 0.563673 | 7_2:-86962026 | Msa1085950:CDS |
| CGAGCCCACGGAGATTCCTA+AGG | 0.567771 | 7_2:-86961741 | Msa1085950:CDS |
| TCTTCATCTCTGATTAAACA+TGG | 0.570013 | 7_2:+86961716 | None:intergenic |
| CCCCTGAAAATAGTTTGAGA+AGG | 0.571206 | 7_2:-86962173 | Msa1085950:CDS |
| TCATCACCACTGTAACTATG+AGG | 0.575325 | 7_2:+86962324 | None:intergenic |
| ATTAGAAGAGACTATTTCTG+AGG | 0.581489 | 7_2:+86962659 | None:intergenic |
| CACCACTGTAACTATGAGGA+AGG | 0.587875 | 7_2:+86962328 | None:intergenic |
| GTCTCTGCAGTCGTGTGCAG+AGG | 0.597260 | 7_2:-86962787 | Msa1085950:five_prime_UTR |
| TGCACGCAATGACGAGCCCA+CGG | 0.603558 | 7_2:-86961753 | Msa1085950:CDS |
| GCAAACCTGCCACGTACGCG+TGG | 0.603581 | 7_2:+86961773 | None:intergenic |
| TTCCTTCCTCATAGTTACAG+TGG | 0.611300 | 7_2:-86962330 | Msa1085950:CDS |
| GACAATCGACCACGCGTACG+TGG | 0.616500 | 7_2:-86961782 | Msa1085950:CDS |
| TTTCTGAGGTTGAATGTGTG+TGG | 0.627039 | 7_2:+86962673 | None:intergenic |
| TGATGTAGATGGAAGAATTG+CGG | 0.651165 | 7_2:-86961323 | Msa1085950:intron |
| AACGGAGGGGAATTCGCAAG+AGG | 0.653430 | 7_2:-86962008 | Msa1085950:CDS |
| ATAATATGTCTCCAACGGAG+GGG | 0.654626 | 7_2:-86962021 | Msa1085950:CDS |
| CAAAGTAGGTCGTTATAGCG+CGG | 0.657198 | 7_2:-86961975 | Msa1085950:CDS |
| CATGAAGATGATGTAACAGT+GGG | 0.675111 | 7_2:-86961297 | Msa1085950:CDS |
| GGAGCCTTAGGAATCTCCGT+GGG | 0.684622 | 7_2:+86961737 | None:intergenic |
| GCATGAAGATGATGTAACAG+TGG | 0.695685 | 7_2:-86961298 | Msa1085950:CDS |
| TGGAGCCTTAGGAATCTCCG+TGG | 0.702219 | 7_2:+86961736 | None:intergenic |
| AAAGAGGCTGCACTGCACTG+TGG | 0.704215 | 7_2:+86962457 | None:intergenic |
| TGAATGTGTGTGGAAAGTAG+TGG | 0.760361 | 7_2:+86962683 | None:intergenic |
| ACAGAGCCAAGAGAACACAG+AGG | 0.782868 | 7_2:-86961925 | Msa1085950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr7_2:86961953-86961972 | Msa1085950:CDS | 20.0% |
| !!! | GATTTTATTGAAGTTTGTTT+TGG | - | chr7_2:86961953-86961972 | Msa1085950:CDS | 20.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr7_2:86961261-86961280 | Msa1085950:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr7_2:86961298-86961317 | Msa1085950:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr7_2:86961520-86961539 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr7_2:86961779-86961798 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr7_2:86961813-86961832 | Msa1085950:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr7_2:86961996-86962015 | Msa1085950:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr7_2:86962119-86962138 | Msa1085950:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr7_2:86962409-86962428 | Msa1085950:CDS | 25.0% |
| !!! | GACACTGATTCTTATTAAAA+AGG | - | chr7_2:86961261-86961280 | Msa1085950:CDS | 25.0% |
| !!! | GAATTTTGATTCTATGTCTT+CGG | - | chr7_2:86961298-86961317 | Msa1085950:CDS | 25.0% |
| ! | AGAAAAAAGAAGGTGAAAAA+GGG | + | chr7_2:86961520-86961539 | None:intergenic | 25.0% |
| !! | TGAGTTTGAAATAGAAAACT+AGG | + | chr7_2:86961779-86961798 | None:intergenic | 25.0% |
| ! | TTGATTCATCGAAATTTCAA+AGG | - | chr7_2:86961813-86961832 | Msa1085950:intron | 25.0% |
| ! | AGAAAATAATATGTCTCCAA+CGG | - | chr7_2:86961996-86962015 | Msa1085950:CDS | 25.0% |
| ! | GAACTTTAACAAGACTATTA+AGG | - | chr7_2:86962119-86962138 | Msa1085950:intron | 25.0% |
| !! | TTTGAAATAGTAAGCATGTA+AGG | - | chr7_2:86962409-86962428 | Msa1085950:CDS | 25.0% |
| TCTTCGGAACTATATTCATT+CGG | - | chr7_2:86961314-86961333 | Msa1085950:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr7_2:86961366-86961385 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr7_2:86961368-86961387 | Msa1085950:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr7_2:86961427-86961446 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr7_2:86961428-86961447 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr7_2:86961438-86961457 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr7_2:86961487-86961506 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr7_2:86961521-86961540 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr7_2:86961584-86961603 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr7_2:86961613-86961632 | Msa1085950:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr7_2:86961802-86961821 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr7_2:86962033-86962052 | Msa1085950:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr7_2:86962309-86962328 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr7_2:86962468-86962487 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr7_2:86962655-86962674 | Msa1085950:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr7_2:86962656-86962675 | Msa1085950:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr7_2:86962673-86962692 | Msa1085950:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr7_2:86962755-86962774 | Msa1085950:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr7_2:86962761-86962780 | Msa1085950:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr7_2:86962786-86962805 | Msa1085950:five_prime_UTR | 30.0% | |
| TCTTCGGAACTATATTCATT+CGG | - | chr7_2:86961314-86961333 | Msa1085950:CDS | 30.0% | |
| !! | ATTAGAAGAGACTATTTCTG+AGG | + | chr7_2:86961366-86961385 | None:intergenic | 30.0% |
| GAAATAGTCTCTTCTAATGA+TGG | - | chr7_2:86961368-86961387 | Msa1085950:intron | 30.0% | |
| GATGAGAATTGGTGAAAAAA+GGG | + | chr7_2:86961427-86961446 | None:intergenic | 30.0% | |
| TGATGAGAATTGGTGAAAAA+AGG | + | chr7_2:86961428-86961447 | None:intergenic | 30.0% | |
| ATTAGTACTGTGATGAGAAT+TGG | + | chr7_2:86961438-86961457 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTCATCAAAT+GGG | + | chr7_2:86961487-86961506 | None:intergenic | 30.0% | |
| GAGAAAAAAGAAGGTGAAAA+AGG | + | chr7_2:86961521-86961540 | None:intergenic | 30.0% | |
| GAGAAACTTTCATTACAAAG+AGG | + | chr7_2:86961584-86961603 | None:intergenic | 30.0% | |
| ! | TTTTTCCCAAGTTAAAAACG+AGG | - | chr7_2:86961613-86961632 | Msa1085950:intron | 30.0% |
| ATGAATCAACGAGATTATCA+TGG | + | chr7_2:86961802-86961821 | None:intergenic | 30.0% | |
| GAGGAACAAAATTTCAAAGT+AGG | - | chr7_2:86962033-86962052 | Msa1085950:CDS | 30.0% | |
| TCTTCATCTCTGATTAAACA+TGG | + | chr7_2:86962309-86962328 | None:intergenic | 30.0% | |
| ! | GATTTTACTTGTACAAGCTA+TGG | + | chr7_2:86962468-86962487 | None:intergenic | 30.0% |
| !! | TGACTATTGATTGAGTTGAA+AGG | - | chr7_2:86962655-86962674 | Msa1085950:CDS | 30.0% |
| !! | GACTATTGATTGAGTTGAAA+GGG | - | chr7_2:86962656-86962675 | Msa1085950:CDS | 30.0% |
| !!! | AAAGGGTTTTGATTCTTATG+TGG | - | chr7_2:86962673-86962692 | Msa1085950:CDS | 30.0% |
| GAACAATATCTGAAGAATAG+TGG | - | chr7_2:86962755-86962774 | Msa1085950:five_prime_UTR | 30.0% | |
| TATCTGAAGAATAGTGGTTA+CGG | - | chr7_2:86962761-86962780 | Msa1085950:five_prime_UTR | 30.0% | |
| TTGGTCAATTTCAGTACTTT+GGG | - | chr7_2:86962786-86962805 | Msa1085950:five_prime_UTR | 30.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr7_2:86961403-86961422 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr7_2:86961488-86961507 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr7_2:86961530-86961549 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr7_2:86961621-86961640 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr7_2:86961852-86961871 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr7_2:86961853-86961872 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr7_2:86961850-86961869 | Msa1085950:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr7_2:86961854-86961873 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr7_2:86961999-86962018 | Msa1085950:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr7_2:86962000-86962019 | Msa1085950:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr7_2:86962422-86962441 | Msa1085950:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr7_2:86962688-86962707 | Msa1085950:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr7_2:86962699-86962718 | Msa1085950:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr7_2:86962725-86962744 | Msa1085950:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr7_2:86962785-86962804 | Msa1085950:five_prime_UTR | 35.0% | |
| AAGAGTCTGAGAAAAATGGA+AGG | + | chr7_2:86961403-86961422 | None:intergenic | 35.0% | |
| GGAAGAAAAGGTTCATCAAA+TGG | + | chr7_2:86961488-86961507 | None:intergenic | 35.0% | |
| GGAGAGAAAGAGAAAAAAGA+AGG | + | chr7_2:86961530-86961549 | None:intergenic | 35.0% | |
| !!! | CGATTCCTCGTTTTTAACTT+GGG | + | chr7_2:86961621-86961640 | None:intergenic | 35.0% |
| ! | CCTTCTCAAACTATTTTCAG+GGG | + | chr7_2:86961852-86961871 | None:intergenic | 35.0% |
| ! | CCCTTCTCAAACTATTTTCA+GGG | + | chr7_2:86961853-86961872 | None:intergenic | 35.0% |
| CCCTGAAAATAGTTTGAGAA+GGG | - | chr7_2:86961850-86961869 | Msa1085950:intron | 35.0% | |
| ! | ACCCTTCTCAAACTATTTTC+AGG | + | chr7_2:86961854-86961873 | None:intergenic | 35.0% |
| AAATAATATGTCTCCAACGG+AGG | - | chr7_2:86961999-86962018 | Msa1085950:CDS | 35.0% | |
| AATAATATGTCTCCAACGGA+GGG | - | chr7_2:86962000-86962019 | Msa1085950:CDS | 35.0% | |
| GCATGTAAGGATTGTACATT+TGG | - | chr7_2:86962422-86962441 | Msa1085950:CDS | 35.0% | |
| !! | TTATGTGGCTTTGATGTAGA+TGG | - | chr7_2:86962688-86962707 | Msa1085950:CDS | 35.0% |
| TGATGTAGATGGAAGAATTG+CGG | - | chr7_2:86962699-86962718 | Msa1085950:CDS | 35.0% | |
| CATGAAGATGATGTAACAGT+GGG | - | chr7_2:86962725-86962744 | Msa1085950:exon | 35.0% | |
| GTTGGTCAATTTCAGTACTT+TGG | - | chr7_2:86962785-86962804 | Msa1085950:five_prime_UTR | 35.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr7_2:86961342-86961361 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr7_2:86961352-86961371 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr7_2:86961374-86961393 | Msa1085950:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr7_2:86961407-86961426 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr7_2:86961622-86961641 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr7_2:86961692-86961711 | Msa1085950:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr7_2:86961701-86961720 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr7_2:86961849-86961868 | Msa1085950:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr7_2:86962001-86962020 | Msa1085950:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr7_2:86962106-86962125 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr7_2:86962300-86962319 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr7_2:86962322-86962341 | Msa1085950:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr7_2:86962323-86962342 | Msa1085950:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr7_2:86962724-86962743 | Msa1085950:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr7_2:86962767-86962786 | Msa1085950:five_prime_UTR | 40.0% | |
| TGAATGTGTGTGGAAAGTAG+TGG | + | chr7_2:86961342-86961361 | None:intergenic | 40.0% | |
| !! | TTTCTGAGGTTGAATGTGTG+TGG | + | chr7_2:86961352-86961371 | None:intergenic | 40.0% |
| ! | GTCTCTTCTAATGATGGAAG+TGG | - | chr7_2:86961374-86961393 | Msa1085950:intron | 40.0% |
| GGGAAAGAGTCTGAGAAAAA+TGG | + | chr7_2:86961407-86961426 | None:intergenic | 40.0% | |
| !! | GCGATTCCTCGTTTTTAACT+TGG | + | chr7_2:86961622-86961641 | None:intergenic | 40.0% |
| TTCCTTCCTCATAGTTACAG+TGG | - | chr7_2:86961692-86961711 | Msa1085950:intron | 40.0% | |
| TCATCACCACTGTAACTATG+AGG | + | chr7_2:86961701-86961720 | None:intergenic | 40.0% | |
| CCCCTGAAAATAGTTTGAGA+AGG | - | chr7_2:86961849-86961868 | Msa1085950:intron | 40.0% | |
| ATAATATGTCTCCAACGGAG+GGG | - | chr7_2:86962001-86962020 | Msa1085950:CDS | 40.0% | |
| AAAGTTCCTCTGTGTTCTCT+TGG | + | chr7_2:86962106-86962125 | None:intergenic | 40.0% | |
| CTGATTAAACATGGAGCCTT+AGG | + | chr7_2:86962300-86962319 | None:intergenic | 40.0% | |
| ! | ATGAAGACGAAGTCGATTTC+TGG | - | chr7_2:86962322-86962341 | Msa1085950:CDS | 40.0% |
| ! | TGAAGACGAAGTCGATTTCT+GGG | - | chr7_2:86962323-86962342 | Msa1085950:CDS | 40.0% |
| GCATGAAGATGATGTAACAG+TGG | - | chr7_2:86962724-86962743 | Msa1085950:exon | 40.0% | |
| AAGAATAGTGGTTACGGAGT+TGG | - | chr7_2:86962767-86962786 | Msa1085950:five_prime_UTR | 40.0% | |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr7_2:86961500-86961519 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr7_2:86961509-86961528 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr7_2:86961551-86961570 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr7_2:86961554-86961573 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr7_2:86961697-86961716 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr7_2:86961863-86961882 | Msa1085950:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr7_2:86961874-86961893 | Msa1085950:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr7_2:86962047-86962066 | Msa1085950:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr7_2:86962094-86962113 | None:intergenic | 45.0% |
| GGGTCTAGAGAAGGAAGAAA+AGG | + | chr7_2:86961500-86961519 | None:intergenic | 45.0% | |
| GGTGAAAAAGGGTCTAGAGA+AGG | + | chr7_2:86961509-86961528 | None:intergenic | 45.0% | |
| !!! | CTGTGGTTTTGATCAGTTGG+AGG | + | chr7_2:86961551-86961570 | None:intergenic | 45.0% |
| !!! | GCACTGTGGTTTTGATCAGT+TGG | + | chr7_2:86961554-86961573 | None:intergenic | 45.0% |
| CACCACTGTAACTATGAGGA+AGG | + | chr7_2:86961697-86961716 | None:intergenic | 45.0% | |
| TTGAGAAGGGTTTGTAGCAC+AGG | - | chr7_2:86961863-86961882 | Msa1085950:intron | 45.0% | |
| ! | TTGTAGCACAGGTGATTTGC+AGG | - | chr7_2:86961874-86961893 | Msa1085950:intron | 45.0% |
| CAAAGTAGGTCGTTATAGCG+CGG | - | chr7_2:86962047-86962066 | Msa1085950:intron | 45.0% | |
| !! | TGTTCTCTTGGCTCTGTACT+TGG | + | chr7_2:86962094-86962113 | None:intergenic | 45.0% |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr7_2:86962097-86962116 | Msa1085950:intron | 50.0% | |
| ACAGAGCCAAGAGAACACAG+AGG | - | chr7_2:86962097-86962116 | Msa1085950:intron | 50.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr7_2:86961568-86961587 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr7_2:86962015-86962034 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr7_2:86962014-86962033 | Msa1085950:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr7_2:86962288-86962307 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr7_2:86962289-86962308 | None:intergenic | 55.0% | |
| AAAGAGGCTGCACTGCACTG+TGG | + | chr7_2:86961568-86961587 | None:intergenic | 55.0% | |
| TCTTGCGAATTCCCCTCCGT+TGG | + | chr7_2:86962015-86962034 | None:intergenic | 55.0% | |
| AACGGAGGGGAATTCGCAAG+AGG | - | chr7_2:86962014-86962033 | Msa1085950:CDS | 55.0% | |
| GGAGCCTTAGGAATCTCCGT+GGG | + | chr7_2:86962288-86962307 | None:intergenic | 55.0% | |
| TGGAGCCTTAGGAATCTCCG+TGG | + | chr7_2:86962289-86962308 | None:intergenic | 55.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr7_2:86961235-86961254 | Msa1085950:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr7_2:86962240-86962259 | Msa1085950:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr7_2:86962269-86962288 | Msa1085950:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr7_2:86962281-86962300 | Msa1085950:CDS | 60.0% | |
| GTCTCTGCAGTCGTGTGCAG+AGG | - | chr7_2:86961235-86961254 | Msa1085950:CDS | 60.0% | |
| GACAATCGACCACGCGTACG+TGG | - | chr7_2:86962240-86962259 | Msa1085950:CDS | 60.0% | |
| TGCACGCAATGACGAGCCCA+CGG | - | chr7_2:86962269-86962288 | Msa1085950:CDS | 60.0% | |
| CGAGCCCACGGAGATTCCTA+AGG | - | chr7_2:86962281-86962300 | Msa1085950:CDS | 60.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr7_2:86961239-86961258 | Msa1085950:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr7_2:86962244-86962263 | Msa1085950:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr7_2:86962252-86962271 | None:intergenic | 65.0% | |
| CTGCAGTCGTGTGCAGAGGC+AGG | - | chr7_2:86961239-86961258 | Msa1085950:CDS | 65.0% | |
| ATCGACCACGCGTACGTGGC+AGG | - | chr7_2:86962244-86962263 | Msa1085950:CDS | 65.0% | |
| GCAAACCTGCCACGTACGCG+TGG | + | chr7_2:86962252-86962271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 86961230 | 86962814 | 86961230 | ID=Msa1085950;Name=Msa1085950 |
| chr7_2 | mRNA | 86961230 | 86962814 | 86961230 | ID=Msa1085950-mRNA-1;Parent=Msa1085950;Name=Msa1085950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|0.5|1|1|1|4|0|324 |
| chr7_2 | exon | 86961230 | 86961337 | 86961230 | ID=Msa1085950-mRNA-1:exon:23664;Parent=Msa1085950-mRNA-1 |
| chr7_2 | exon | 86961700 | 86961828 | 86961700 | ID=Msa1085950-mRNA-1:exon:23663;Parent=Msa1085950-mRNA-1 |
| chr7_2 | exon | 86961904 | 86962056 | 86961904 | ID=Msa1085950-mRNA-1:exon:23662;Parent=Msa1085950-mRNA-1 |
| chr7_2 | exon | 86962149 | 86962814 | 86962149 | ID=Msa1085950-mRNA-1:exon:23661;Parent=Msa1085950-mRNA-1 |
| chr7_2 | five_prime_UTR | 86962734 | 86962814 | 86962734 | ID=Msa1085950-mRNA-1:five_prime_utr;Parent=Msa1085950-mRNA-1 |
| chr7_2 | CDS | 86962149 | 86962733 | 86962149 | ID=Msa1085950-mRNA-1:cds;Parent=Msa1085950-mRNA-1 |
| chr7_2 | CDS | 86961904 | 86962056 | 86961904 | ID=Msa1085950-mRNA-1:cds;Parent=Msa1085950-mRNA-1 |
| chr7_2 | CDS | 86961700 | 86961828 | 86961700 | ID=Msa1085950-mRNA-1:cds;Parent=Msa1085950-mRNA-1 |
| chr7_2 | CDS | 86961230 | 86961337 | 86961230 | ID=Msa1085950-mRNA-1:cds;Parent=Msa1085950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
