Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526720 | XP_013468988.1 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.49e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526720 | sp|Q9SQZ9|PITH1_ARATH | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.70e-103 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526720 | I3SPG3 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 7.10e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0171850 | Msa0526720 | 0.832829 | 7.562832e-56 | -8.615850e-47 |
| Msa0276960 | Msa0526720 | 0.803440 | 3.482066e-49 | -8.615850e-47 |
| Msa0526720 | Msa0819540 | 0.812168 | 4.854901e-51 | -8.615850e-47 |
| Msa0526720 | Msa1131170 | 0.814995 | 1.159856e-51 | -8.615850e-47 |
| Msa0526720 | Msa1260530 | 0.804272 | 2.338739e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526720 | MtrunA17_Chr1g0190801 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.37e-130 | 363 |
| Msa0526720 | MtrunA17_Chr2g0285181 | 32.500 | 160 | 94 | 8 | 17 | 169 | 20 | 172 | 8.90e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526720 | AT3G04780.1 | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.86e-104 | 295 |
| Msa0526720 | AT2G25950.1 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.45e-11 | 60.8 |
| Msa0526720 | AT2G25950.2 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.98e-11 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTTTGTGCGATATA+TGG | 0.220675 | 3_4:+80767148 | None:intergenic |
| GAAAAGAGCTTCACTGTCTT+GGG | 0.289539 | 3_4:+80765342 | None:intergenic |
| ATATTCAGCTTCATGAATAA+TGG | 0.295236 | 3_4:-80763057 | Msa0526720:three_prime_UTR |
| CCACCAAATTGTGGCGTGTA+TGG | 0.316923 | 3_4:-80762726 | Msa0526720:three_prime_UTR |
| AACCCATACACGCCACAATT+TGG | 0.328476 | 3_4:+80762723 | None:intergenic |
| ATAGTATTACCTTCATCTTC+AGG | 0.337204 | 3_4:+80766667 | None:intergenic |
| TCAAAATTTCCAAGGGTAGA+TGG | 0.343531 | 3_4:+80763091 | None:intergenic |
| ACAAGGAACACATGGGATTC+AGG | 0.346409 | 3_4:-80765317 | Msa0526720:intron |
| TATCTTGAATGACTTAAGAT+TGG | 0.366253 | 3_4:-80762867 | Msa0526720:three_prime_UTR |
| GGAAAAGAGCTTCACTGTCT+TGG | 0.377000 | 3_4:+80765341 | None:intergenic |
| ATAGTAACCCTATTCTATTT+CGG | 0.379348 | 3_4:+80762762 | None:intergenic |
| CGAACCTGTTTAATAGCGTT+GGG | 0.387848 | 3_4:+80766897 | None:intergenic |
| GTTCAGAAGATTATGCTGAT+TGG | 0.398671 | 3_4:-80764816 | Msa0526720:CDS |
| ATCTCTTAGACTTCATAGAT+TGG | 0.400371 | 3_4:-80766962 | Msa0526720:CDS |
| GAATCCCATGTGTTCCTTGT+TGG | 0.401137 | 3_4:+80765320 | None:intergenic |
| TCGAGCGAGCGAGCAATGTC+TGG | 0.415846 | 3_4:-80767120 | Msa0526720:exon |
| ATATGCATCCGAAATAGAAT+AGG | 0.420531 | 3_4:-80762770 | Msa0526720:three_prime_UTR |
| CAGCTTGACAATATTTATTG+AGG | 0.448896 | 3_4:-80764868 | Msa0526720:CDS |
| TCTCCCCAACGCTATTAAAC+AGG | 0.449659 | 3_4:-80766901 | Msa0526720:intron |
| TATTCTCTTATAGGGAAAAC+CGG | 0.450332 | 3_4:-80765028 | Msa0526720:intron |
| CCGAACCTGTTTAATAGCGT+TGG | 0.450637 | 3_4:+80766896 | None:intergenic |
| TTGACATACTTTAAAAGTAC+CGG | 0.471646 | 3_4:+80765009 | None:intergenic |
| TATGCATCCGAAATAGAATA+GGG | 0.472594 | 3_4:-80762769 | Msa0526720:three_prime_UTR |
| AATTGTGGCGTGTATGGGTT+CGG | 0.473971 | 3_4:-80762720 | Msa0526720:three_prime_UTR |
| ATGTCAAATTTCAAAATGTC+CGG | 0.480329 | 3_4:-80764993 | Msa0526720:CDS |
| CACCAAATTGTGGCGTGTAT+GGG | 0.483217 | 3_4:-80762725 | Msa0526720:three_prime_UTR |
| ACCCTTGTGAACAGCGGTGG+TGG | 0.483236 | 3_4:+80767089 | None:intergenic |
| CTTTATTCAGTTGCTTTCAA+AGG | 0.501742 | 3_4:-80766691 | Msa0526720:CDS |
| GGTGTGACAATTTATGTGAT+AGG | 0.502172 | 3_4:-80762968 | Msa0526720:three_prime_UTR |
| ATTTCCAATCAAAATTTCCA+AGG | 0.510535 | 3_4:+80763083 | None:intergenic |
| TCTGCACATCCATCTACCCT+TGG | 0.510956 | 3_4:-80763100 | Msa0526720:three_prime_UTR |
| AGTTTAATAACTTGAGTGAA+AGG | 0.521408 | 3_4:+80766712 | None:intergenic |
| GAAGGGTTTGAAGAAGATTG+AGG | 0.521516 | 3_4:-80763157 | Msa0526720:CDS |
| CCATACACGCCACAATTTGG+TGG | 0.524359 | 3_4:+80762726 | None:intergenic |
| TTAGACTTCATAGATTGGAC+TGG | 0.525278 | 3_4:-80766957 | Msa0526720:CDS |
| TAGGGTTATAGAGAAGATGA+TGG | 0.528724 | 3_4:-80766781 | Msa0526720:CDS |
| TGTTAAACAGTATATCTGCT+TGG | 0.533996 | 3_4:-80762990 | Msa0526720:three_prime_UTR |
| AGCCACCACCGCTGTTCACA+AGG | 0.536518 | 3_4:-80767091 | Msa0526720:CDS |
| AGTTGAAACAACGGACATGA+AGG | 0.536929 | 3_4:-80763175 | Msa0526720:CDS |
| GTTAAACAGTATATCTGCTT+GGG | 0.538527 | 3_4:-80762989 | Msa0526720:three_prime_UTR |
| AAAATTAATGTATCACTTGG+TGG | 0.546577 | 3_4:+80765178 | None:intergenic |
| GACAAAATTAATGTATCACT+TGG | 0.564267 | 3_4:+80765175 | None:intergenic |
| TTGGAGCTAGACTACATTGA+CGG | 0.576277 | 3_4:-80762848 | Msa0526720:three_prime_UTR |
| TTCAAAGGTCCTGAAGATGA+AGG | 0.580336 | 3_4:-80766676 | Msa0526720:intron |
| TATGGAAAGAGAGAGAAGAG+AGG | 0.580454 | 3_4:+80767166 | None:intergenic |
| TTTGTCTCCTGAAAACCTCA+AGG | 0.583750 | 3_4:-80765158 | Msa0526720:intron |
| TTTCCAATCAAAATTTCCAA+GGG | 0.596549 | 3_4:+80763084 | None:intergenic |
| AAAAGAGCTTCACTGTCTTG+GGG | 0.597831 | 3_4:+80765343 | None:intergenic |
| GTTGAAACAACGGACATGAA+GGG | 0.604552 | 3_4:-80763174 | Msa0526720:CDS |
| TACTTGACCCTTGTGAACAG+CGG | 0.613002 | 3_4:+80767083 | None:intergenic |
| TCAAATTTCAAAATGTCCGG+AGG | 0.653931 | 3_4:-80764990 | Msa0526720:intron |
| TTGACCCTTGTGAACAGCGG+TGG | 0.656088 | 3_4:+80767086 | None:intergenic |
| GATGTAATGTTCAAGCTGCA+TGG | 0.657411 | 3_4:-80762946 | Msa0526720:three_prime_UTR |
| GAACCTGTTTAATAGCGTTG+GGG | 0.669005 | 3_4:+80766898 | None:intergenic |
| GCCACCACCGCTGTTCACAA+GGG | 0.677895 | 3_4:-80767090 | Msa0526720:CDS |
| TTGATGCAGAGTTGAAACAA+CGG | 0.696444 | 3_4:-80763184 | Msa0526720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTATTAATTTAATC+AGG | - | chr3_4:80762901-80762920 | Msa0526720:three_prime_UTR | 10.0% |
| !!! | TTTTTTTACTAATGAAAATT+AGG | - | chr3_4:80763089-80763108 | Msa0526720:three_prime_UTR | 10.0% |
| !!! | TTTTTTACTAATGAAAATTA+GGG | - | chr3_4:80763090-80763109 | Msa0526720:three_prime_UTR | 10.0% |
| !!! | ATTTTTATTTTTTGAAAACT+CGG | - | chr3_4:80763561-80763580 | Msa0526720:intron | 10.0% |
| !! | AAAATTAATAAATAATGTCT+TGG | + | chr3_4:80764077-80764096 | None:intergenic | 10.0% |
| !! | TAGAAAATTTAAATAAATTG+AGG | + | chr3_4:80764216-80764235 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTCTATCATATT+TGG | - | chr3_4:80764811-80764830 | Msa0526720:CDS | 10.0% |
| !!! | TATTTAATTTATTCTCTTAT+AGG | - | chr3_4:80764852-80764871 | Msa0526720:CDS | 10.0% |
| !!! | ATTTAATTTATTCTCTTATA+GGG | - | chr3_4:80764853-80764872 | Msa0526720:CDS | 10.0% |
| !!! | AAGTCAAATATTATTTTATT+TGG | + | chr3_4:80765283-80765302 | None:intergenic | 10.0% |
| !!! | AATAAAAAAAAAAGGGTTTT+TGG | + | chr3_4:80763032-80763051 | None:intergenic | 15.0% |
| !! | GTAACACAATAAAAAAAAAA+GGG | + | chr3_4:80763039-80763058 | None:intergenic | 15.0% |
| !! | AGTAACACAATAAAAAAAAA+AGG | + | chr3_4:80763040-80763059 | None:intergenic | 15.0% |
| !! | TTATATGATATGAATGAATA+AGG | + | chr3_4:80763253-80763272 | None:intergenic | 15.0% |
| !! | AAAACCATTAAAATAAATTG+AGG | + | chr3_4:80764109-80764128 | None:intergenic | 15.0% |
| !! | TAACAATAATGTTATACATT+TGG | - | chr3_4:80765307-80765326 | Msa0526720:intron | 15.0% |
| !! | AACAATAATGTTATACATTT+GGG | - | chr3_4:80765308-80765327 | Msa0526720:intron | 15.0% |
| !!! | AAATTTATGAATGAATGTTT+TGG | - | chr3_4:80765354-80765373 | Msa0526720:intron | 15.0% |
| !!! | TATTTTCTTTTTCAAATGTT+TGG | - | chr3_4:80766971-80766990 | Msa0526720:intron | 15.0% |
| !!! | ATTTTCTTTTTCAAATGTTT+GGG | - | chr3_4:80766972-80766991 | Msa0526720:intron | 15.0% |
| !!! | CTTTAAAAGAAAAACTAATA+TGG | + | chr3_4:80767069-80767088 | None:intergenic | 15.0% |
| !!! | GATTATGATGATGAATAATA+GGG | + | chr3_4:80762841-80762860 | None:intergenic | 20.0% |
| !! | AAAGAAAAAGATTAGTAACT+AGG | + | chr3_4:80762888-80762907 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCAAACATTAG+CGG | - | chr3_4:80763454-80763473 | Msa0526720:intron | 20.0% |
| !!! | GATACCTCAATTTATTTTAA+TGG | - | chr3_4:80764102-80764121 | Msa0526720:intron | 20.0% |
| !!! | TTTAAGACTATATACCATTA+TGG | + | chr3_4:80764309-80764328 | None:intergenic | 20.0% |
| !! | GCTATTAAAACAAACAAATT+TGG | + | chr3_4:80764614-80764633 | None:intergenic | 20.0% |
| !! | CTTTATAAAAGTAGGAAATA+AGG | + | chr3_4:80764936-80764955 | None:intergenic | 20.0% |
| !! | ACAATAATGTTATACATTTG+GGG | - | chr3_4:80765309-80765328 | Msa0526720:intron | 20.0% |
| !! | GAGGAATAAATCATATAAAA+TGG | - | chr3_4:80765845-80765864 | Msa0526720:intron | 20.0% |
| !! | AACCTAATTTGATTGATATA+AGG | + | chr3_4:80766455-80766474 | None:intergenic | 20.0% |
| !! | TTGGGTAATATGTAAAAAAT+TGG | - | chr3_4:80766990-80767009 | Msa0526720:intron | 20.0% |
| !! | TGGGTAATATGTAAAAAATT+GGG | - | chr3_4:80766991-80767010 | Msa0526720:intron | 20.0% |
| !!! | ATTTTTTAGAAAAGCAAAGT+AGG | + | chr3_4:80767101-80767120 | None:intergenic | 20.0% |
| !! | CGATTATGATGATGAATAAT+AGG | + | chr3_4:80762842-80762861 | None:intergenic | 25.0% |
| ! | AGTTTAATAACTTGAGTGAA+AGG | + | chr3_4:80763180-80763199 | None:intergenic | 25.0% |
| ! | TTACATGTACAATCATATGT+GGG | + | chr3_4:80763318-80763337 | None:intergenic | 25.0% |
| ! | TATTGAATGTAATCACATGT+TGG | + | chr3_4:80763425-80763444 | None:intergenic | 25.0% |
| ! | ACATGTATAGATACCAAAAT+GGG | + | chr3_4:80763531-80763550 | None:intergenic | 25.0% |
| ! | TACATGTATAGATACCAAAA+TGG | + | chr3_4:80763532-80763551 | None:intergenic | 25.0% |
| !! | GATTCGAAGTATTCAAATAT+AGG | + | chr3_4:80763843-80763862 | None:intergenic | 25.0% |
| ! | TATAGTAATATGTTACGCTT+TGG | + | chr3_4:80763939-80763958 | None:intergenic | 25.0% |
| !! | GATCGACTATTATATTTTCA+TGG | - | chr3_4:80763961-80763980 | Msa0526720:intron | 25.0% |
| !! | TAGCTAATCATTTTCTTAAG+TGG | - | chr3_4:80764355-80764374 | Msa0526720:intron | 25.0% |
| ! | CTCATTATAAAATTCTTCCA+AGG | + | chr3_4:80764390-80764409 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTATAATGAGA+TGG | - | chr3_4:80764391-80764410 | Msa0526720:intron | 25.0% |
| !! | AGAATTTTATAATGAGATGG+AGG | - | chr3_4:80764394-80764413 | Msa0526720:intron | 25.0% |
| ! | TTTGTTGACATGATTGTAAT+CGG | - | chr3_4:80764503-80764522 | Msa0526720:intron | 25.0% |
| ! | AAAATTAATGTATCACTTGG+TGG | + | chr3_4:80764714-80764733 | None:intergenic | 25.0% |
| ! | GACAAAATTAATGTATCACT+TGG | + | chr3_4:80764717-80764736 | None:intergenic | 25.0% |
| !! | TTGACATACTTTAAAAGTAC+CGG | + | chr3_4:80764883-80764902 | None:intergenic | 25.0% |
| ! | ATGTCAAATTTCAAAATGTC+CGG | - | chr3_4:80764896-80764915 | Msa0526720:intron | 25.0% |
| ! | AAATAATACCCCAAATAAAG+GGG | + | chr3_4:80765242-80765261 | None:intergenic | 25.0% |
| ! | CAAATAATACCCCAAATAAA+GGG | + | chr3_4:80765243-80765262 | None:intergenic | 25.0% |
| ! | ACAAATAATACCCCAAATAA+AGG | + | chr3_4:80765244-80765263 | None:intergenic | 25.0% |
| ! | AGAAGAATAGATCATACAAA+TGG | - | chr3_4:80765481-80765500 | Msa0526720:intron | 25.0% |
| ! | AATGTATTGGAGAGAAAATA+TGG | - | chr3_4:80765737-80765756 | Msa0526720:intron | 25.0% |
| ! | ATGTATTGGAGAGAAAATAT+GGG | - | chr3_4:80765738-80765757 | Msa0526720:intron | 25.0% |
| ! | TTATGATGTCAACTAATTTG+TGG | - | chr3_4:80765973-80765992 | Msa0526720:intron | 25.0% |
| ! | TGCAAAACAAAAAGATTATG+TGG | + | chr3_4:80766096-80766115 | None:intergenic | 25.0% |
| ! | ATTAAGTACCAATTCCAATA+TGG | + | chr3_4:80766149-80766168 | None:intergenic | 25.0% |
| !!! | GGTCAGACATTTTAAAATTT+CGG | + | chr3_4:80766300-80766319 | None:intergenic | 25.0% |
| !!! | ATTTTAAAATGTCTGACCAA+TGG | - | chr3_4:80766302-80766321 | Msa0526720:intron | 25.0% |
| ! | TGCCTTATATCAATCAAATT+AGG | - | chr3_4:80766450-80766469 | Msa0526720:intron | 25.0% |
| !!! | TCGAACATTTTGAAAATTGT+AGG | - | chr3_4:80766617-80766636 | Msa0526720:intron | 25.0% |
| ! | TTTCCAATCAAAATTTCCAA+GGG | + | chr3_4:80766808-80766827 | None:intergenic | 25.0% |
| ! | ATTTCCAATCAAAATTTCCA+AGG | + | chr3_4:80766809-80766828 | None:intergenic | 25.0% |
| ! | ATATTCAGCTTCATGAATAA+TGG | - | chr3_4:80766832-80766851 | Msa0526720:intron | 25.0% |
| ! | GGGTAATATGTAAAAAATTG+GGG | - | chr3_4:80766992-80767011 | Msa0526720:intron | 25.0% |
| ! | TATCTTGAATGACTTAAGAT+TGG | - | chr3_4:80767022-80767041 | Msa0526720:intron | 25.0% |
| ! | ATAGTAACCCTATTCTATTT+CGG | + | chr3_4:80767130-80767149 | None:intergenic | 25.0% |
| ATCTCTTAGACTTCATAGAT+TGG | - | chr3_4:80762927-80762946 | Msa0526720:three_prime_UTR | 30.0% | |
| ! | CTTTATTCAGTTGCTTTCAA+AGG | - | chr3_4:80763198-80763217 | Msa0526720:intron | 30.0% |
| ATAGTATTACCTTCATCTTC+AGG | + | chr3_4:80763225-80763244 | None:intergenic | 30.0% | |
| TACATGTACAATCATATGTG+GGG | + | chr3_4:80763317-80763336 | None:intergenic | 30.0% | |
| CTTACATGTACAATCATATG+TGG | + | chr3_4:80763319-80763338 | None:intergenic | 30.0% | |
| ATGTATAGATACCAAAATGG+GGG | + | chr3_4:80763529-80763548 | None:intergenic | 30.0% | |
| CATGTATAGATACCAAAATG+GGG | + | chr3_4:80763530-80763549 | None:intergenic | 30.0% | |
| TGCTAACAAGATGTAAAGTT+TGG | + | chr3_4:80763803-80763822 | None:intergenic | 30.0% | |
| AGTTAGTTCCTGTATTTGTT+AGG | - | chr3_4:80763897-80763916 | Msa0526720:intron | 30.0% | |
| GAGTTTAACCTAACAAATAC+AGG | + | chr3_4:80763908-80763927 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3_4:80764122-80764141 | Msa0526720:intron | 30.0% |
| AACATCGCATTAATTTAGAG+TGG | + | chr3_4:80764278-80764297 | None:intergenic | 30.0% | |
| TGGTGAAGATTGTATTTGTA+GGG | + | chr3_4:80764449-80764468 | None:intergenic | 30.0% | |
| TTGGTGAAGATTGTATTTGT+AGG | + | chr3_4:80764450-80764469 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAGTAGCAAAT+TGG | + | chr3_4:80764469-80764488 | None:intergenic | 30.0% |
| TATTCTCTTATAGGGAAAAC+CGG | - | chr3_4:80764861-80764880 | Msa0526720:CDS | 30.0% | |
| TAAGGAAAATAACATACCTC+CGG | + | chr3_4:80764918-80764937 | None:intergenic | 30.0% | |
| AATTGGATGAGAAAAATGGA+AGG | + | chr3_4:80764961-80764980 | None:intergenic | 30.0% | |
| !! | TTCCATTTTTCTCATCCAAT+TGG | - | chr3_4:80764960-80764979 | Msa0526720:intron | 30.0% |
| CTCAATAAATATTGTCAAGC+TGG | + | chr3_4:80765023-80765042 | None:intergenic | 30.0% | |
| CAGCTTGACAATATTTATTG+AGG | - | chr3_4:80765021-80765040 | Msa0526720:intron | 30.0% | |
| ATAATGTTATACATTTGGGG+TGG | - | chr3_4:80765312-80765331 | Msa0526720:intron | 30.0% | |
| !!! | AATGTTTTGGAGAGAAAGTA+GGG | - | chr3_4:80765367-80765386 | Msa0526720:intron | 30.0% |
| TGCTAAAATTCCATCATATG+TGG | - | chr3_4:80765412-80765431 | Msa0526720:intron | 30.0% | |
| AAATTCCATCATATGTGGTT+TGG | - | chr3_4:80765417-80765436 | Msa0526720:intron | 30.0% | |
| AATTCCATCATATGTGGTTT+GGG | - | chr3_4:80765418-80765437 | Msa0526720:intron | 30.0% | |
| GCCTAATACTTAAAGGTAAA+AGG | - | chr3_4:80765515-80765534 | Msa0526720:intron | 30.0% | |
| ! | GCCTTTTACCTTTAAGTATT+AGG | + | chr3_4:80765519-80765538 | None:intergenic | 30.0% |
| CAAATCTAAACCCTTTCTAA+TGG | + | chr3_4:80765566-80765585 | None:intergenic | 30.0% | |
| AGAAAGGGTTTAGATTTGAA+TGG | - | chr3_4:80765568-80765587 | Msa0526720:intron | 30.0% | |
| AGGTTTGTGAATGAATGTAT+TGG | - | chr3_4:80765724-80765743 | Msa0526720:intron | 30.0% | |
| TGCTAAAATTTCAACTTGTG+TGG | - | chr3_4:80765782-80765801 | Msa0526720:intron | 30.0% | |
| AAATTTCAACTTGTGTGGTT+TGG | - | chr3_4:80765787-80765806 | Msa0526720:intron | 30.0% | |
| AATTTCAACTTGTGTGGTTT+GGG | - | chr3_4:80765788-80765807 | Msa0526720:intron | 30.0% | |
| ! | CCTTTTACCTTTTACGTATT+AGG | + | chr3_4:80765874-80765893 | None:intergenic | 30.0% |
| CCTAATACGTAAAAGGTAAA+AGG | - | chr3_4:80765871-80765890 | Msa0526720:intron | 30.0% | |
| TATAAGTCAGACCATTAAGA+AGG | - | chr3_4:80765908-80765927 | Msa0526720:intron | 30.0% | |
| ATAAGTCAGACCATTAAGAA+GGG | - | chr3_4:80765909-80765928 | Msa0526720:intron | 30.0% | |
| CAAATCTAAACCCTTCTTAA+TGG | + | chr3_4:80765922-80765941 | None:intergenic | 30.0% | |
| TTGCAATGTGATCTACAAAT+TGG | - | chr3_4:80766111-80766130 | Msa0526720:intron | 30.0% | |
| TACTTAATTGTCTTGCTTGT+GGG | - | chr3_4:80766161-80766180 | Msa0526720:intron | 30.0% | |
| TAATTCAAAGAACGAAAGTG+TGG | + | chr3_4:80766187-80766206 | None:intergenic | 30.0% | |
| TCATCAACATTCAATCTCAA+AGG | + | chr3_4:80766345-80766364 | None:intergenic | 30.0% | |
| !!! | CAACACATATTTTGATGACA+TGG | - | chr3_4:80766492-80766511 | Msa0526720:intron | 30.0% |
| TGTTAAACAGTATATCTGCT+TGG | - | chr3_4:80766899-80766918 | Msa0526720:intron | 30.0% | |
| GTTAAACAGTATATCTGCTT+GGG | - | chr3_4:80766900-80766919 | Msa0526720:intron | 30.0% | |
| ATATGCATCCGAAATAGAAT+AGG | - | chr3_4:80767119-80767138 | Msa0526720:exon | 30.0% | |
| TATGCATCCGAAATAGAATA+GGG | - | chr3_4:80767120-80767139 | Msa0526720:exon | 30.0% | |
| ! | CGATTTGTTTGTGCGATATA+TGG | + | chr3_4:80762744-80762763 | None:intergenic | 35.0% |
| TTAGACTTCATAGATTGGAC+TGG | - | chr3_4:80762932-80762951 | Msa0526720:three_prime_UTR | 35.0% | |
| TAGGGTTATAGAGAAGATGA+TGG | - | chr3_4:80763108-80763127 | Msa0526720:three_prime_UTR | 35.0% | |
| TGTATAGATACCAAAATGGG+GGG | + | chr3_4:80763528-80763547 | None:intergenic | 35.0% | |
| TGGTATCTATACATGTACAG+TGG | - | chr3_4:80763535-80763554 | Msa0526720:intron | 35.0% | |
| TCTTAAGACTGACTAATTCG+AGG | - | chr3_4:80763591-80763610 | Msa0526720:intron | 35.0% | |
| CTTAAGACTGACTAATTCGA+GGG | - | chr3_4:80763592-80763611 | Msa0526720:intron | 35.0% | |
| TTAAGACTGACTAATTCGAG+GGG | - | chr3_4:80763593-80763612 | Msa0526720:intron | 35.0% | |
| ! | TAAGCCTTATCCAACTAAGT+GGG | + | chr3_4:80764172-80764191 | None:intergenic | 35.0% |
| GATGTTCTACTCTTCCATAA+TGG | - | chr3_4:80764292-80764311 | Msa0526720:intron | 35.0% | |
| ! | TTTTCCAACAAGGAACACAT+GGG | - | chr3_4:80764565-80764584 | Msa0526720:intron | 35.0% |
| !! | TGAGCATAGTTAATGGACTT+GGG | + | chr3_4:80764778-80764797 | None:intergenic | 35.0% |
| !! | TTGAGCATAGTTAATGGACT+TGG | + | chr3_4:80764779-80764798 | None:intergenic | 35.0% |
| TCAAATTTCAAAATGTCCGG+AGG | - | chr3_4:80764899-80764918 | Msa0526720:intron | 35.0% | |
| !! | GGAAGGCACTTTATAAAAGT+AGG | + | chr3_4:80764944-80764963 | None:intergenic | 35.0% |
| CACCAATTGGATGAGAAAAA+TGG | + | chr3_4:80764965-80764984 | None:intergenic | 35.0% | |
| ! | CATTTTTCTCATCCAATTGG+TGG | - | chr3_4:80764963-80764982 | Msa0526720:intron | 35.0% |
| GTTCAGAAGATTATGCTGAT+TGG | - | chr3_4:80765073-80765092 | Msa0526720:intron | 35.0% | |
| TAGGTATTTCTTCACACCAA+AGG | + | chr3_4:80765167-80765186 | None:intergenic | 35.0% | |
| CAAGTGTCAAATGGTTCAAT+AGG | + | chr3_4:80765186-80765205 | None:intergenic | 35.0% | |
| GGTAAAATGCAAGTGTCAAA+TGG | + | chr3_4:80765195-80765214 | None:intergenic | 35.0% | |
| !!! | GAATGTTTTGGAGAGAAAGT+AGG | - | chr3_4:80765366-80765385 | Msa0526720:intron | 35.0% |
| !!! | ATGTTTTGGAGAGAAAGTAG+GGG | - | chr3_4:80765368-80765387 | Msa0526720:intron | 35.0% |
| CTTTAAGTATTAGGCAACCT+AGG | + | chr3_4:80765510-80765529 | None:intergenic | 35.0% | |
| CTAGGTTGCCTAATACTTAA+AGG | - | chr3_4:80765508-80765527 | Msa0526720:intron | 35.0% | |
| TACAAGTCAGACCATTAGAA+AGG | - | chr3_4:80765552-80765571 | Msa0526720:intron | 35.0% | |
| ACAAGTCAGACCATTAGAAA+GGG | - | chr3_4:80765553-80765572 | Msa0526720:intron | 35.0% | |
| GTGGTAAACAACAACAATGA+AGG | + | chr3_4:80765669-80765688 | None:intergenic | 35.0% | |
| AGAGGAAACTGACAATTAAG+TGG | + | chr3_4:80765688-80765707 | None:intergenic | 35.0% | |
| ! | CTTATTGTTTCTTCTGCTAG+AGG | + | chr3_4:80765706-80765725 | None:intergenic | 35.0% |
| CTCTAGCAGAAGAAACAATA+AGG | - | chr3_4:80765704-80765723 | Msa0526720:intron | 35.0% | |
| ATGGTAGCCTAATACGTAAA+AGG | - | chr3_4:80765864-80765883 | Msa0526720:intron | 35.0% | |
| AAGAAGGGTTTAGATTTGAG+TGG | - | chr3_4:80765924-80765943 | Msa0526720:intron | 35.0% | |
| ! | TGATGTCAACTAATTTGTGG+AGG | - | chr3_4:80765976-80765995 | Msa0526720:intron | 35.0% |
| ! | GAATAAAGGTTTTCCCTACT+AGG | + | chr3_4:80766010-80766029 | None:intergenic | 35.0% |
| GTGGTAAGCAACAAGAATAA+AGG | + | chr3_4:80766024-80766043 | None:intergenic | 35.0% | |
| TAGCAGAAGAAACGATAAGA+CGG | - | chr3_4:80766062-80766081 | Msa0526720:intron | 35.0% | |
| TCGTATTGCCATATTGGAAT+TGG | - | chr3_4:80766138-80766157 | Msa0526720:intron | 35.0% | |
| GTACTTAATTGTCTTGCTTG+TGG | - | chr3_4:80766160-80766179 | Msa0526720:intron | 35.0% | |
| GAGACCAAATCTGTGAATAT+GGG | + | chr3_4:80766278-80766297 | None:intergenic | 35.0% | |
| !! | AAAAGCATTTCCAAATGCAC+AGG | - | chr3_4:80766582-80766601 | Msa0526720:intron | 35.0% |
| TTGATGCAGAGTTGAAACAA+CGG | - | chr3_4:80766705-80766724 | Msa0526720:CDS | 35.0% | |
| !! | CTTGACTCATACTTTTTACG+AGG | + | chr3_4:80766766-80766785 | None:intergenic | 35.0% |
| TCAAAATTTCCAAGGGTAGA+TGG | + | chr3_4:80766801-80766820 | None:intergenic | 35.0% | |
| !! | CTACCCTTGGAAATTTTGAT+TGG | - | chr3_4:80766802-80766821 | Msa0526720:intron | 35.0% |
| GGTGTGACAATTTATGTGAT+AGG | - | chr3_4:80766921-80766940 | Msa0526720:CDS | 35.0% | |
| ! | GATTTTCTTCCACCAAATTG+TGG | - | chr3_4:80767154-80767173 | Msa0526720:five_prime_UTR | 35.0% |
| TATGGAAAGAGAGAGAAGAG+AGG | + | chr3_4:80762726-80762745 | None:intergenic | 40.0% | |
| GAACCTGTTTAATAGCGTTG+GGG | + | chr3_4:80762994-80763013 | None:intergenic | 40.0% | |
| CGAACCTGTTTAATAGCGTT+GGG | + | chr3_4:80762995-80763014 | None:intergenic | 40.0% | |
| CCAACGCTATTAAACAGGTT+CGG | - | chr3_4:80762993-80763012 | Msa0526720:three_prime_UTR | 40.0% | |
| TTCAAAGGTCCTGAAGATGA+AGG | - | chr3_4:80763213-80763232 | Msa0526720:intron | 40.0% | |
| TGTGGGGATCAGGAAAAAAT+AGG | + | chr3_4:80763301-80763320 | None:intergenic | 40.0% | |
| TACAATCATATGTGGGGATC+AGG | + | chr3_4:80763311-80763330 | None:intergenic | 40.0% | |
| ACTCCGACACATTTGATTGA+AGG | - | chr3_4:80763358-80763377 | Msa0526720:intron | 40.0% | |
| ACGCCTTCAATCAAATGTGT+CGG | + | chr3_4:80763364-80763383 | None:intergenic | 40.0% | |
| ATGTAATCACATGTTGGTGC+TGG | + | chr3_4:80763419-80763438 | None:intergenic | 40.0% | |
| GTCTCATCTTTGATTATCCC+CGG | + | chr3_4:80763699-80763718 | None:intergenic | 40.0% | |
| ATCAAAGATGAGACCTTGAG+AGG | - | chr3_4:80763705-80763724 | Msa0526720:intron | 40.0% | |
| ! | AAGCCTTATCCAACTAAGTG+GGG | + | chr3_4:80764171-80764190 | None:intergenic | 40.0% |
| ! | CTAAGCCTTATCCAACTAAG+TGG | + | chr3_4:80764173-80764192 | None:intergenic | 40.0% |
| GTAGGTGTAGTGAAGTAGTT+AGG | + | chr3_4:80764243-80764262 | None:intergenic | 40.0% | |
| GAGTGGTTAAAAGTAGCAGT+AGG | + | chr3_4:80764261-80764280 | None:intergenic | 40.0% | |
| TTAAGTGGTGTTCATCACCT+TGG | - | chr3_4:80764370-80764389 | Msa0526720:intron | 40.0% | |
| !! | TGTATTTGTAGGGTGCTGTA+AGG | + | chr3_4:80764439-80764458 | None:intergenic | 40.0% |
| !!! | CGGAGTCAATGTTGTTTTCT+AGG | - | chr3_4:80764523-80764542 | Msa0526720:intron | 40.0% |
| AAAAGAGCTTCACTGTCTTG+GGG | + | chr3_4:80764549-80764568 | None:intergenic | 40.0% | |
| GAAAAGAGCTTCACTGTCTT+GGG | + | chr3_4:80764550-80764569 | None:intergenic | 40.0% | |
| ! | AGTGAAGCTCTTTTCCAACA+AGG | - | chr3_4:80764555-80764574 | Msa0526720:intron | 40.0% |
| ! | CTTTTCCAACAAGGAACACA+TGG | - | chr3_4:80764564-80764583 | Msa0526720:intron | 40.0% |
| GATTCAGGTATAGCTTGGTT+TGG | - | chr3_4:80764587-80764606 | Msa0526720:intron | 40.0% | |
| CTTGTGCCCTGTGATTAAAT+CGG | - | chr3_4:80764635-80764654 | Msa0526720:intron | 40.0% | |
| ! | CAGCAACCGATTTAATCACA+GGG | + | chr3_4:80764644-80764663 | None:intergenic | 40.0% |
| ! | TCAGCAACCGATTTAATCAC+AGG | + | chr3_4:80764645-80764664 | None:intergenic | 40.0% |
| TTTGTCTCCTGAAAACCTCA+AGG | - | chr3_4:80764731-80764750 | Msa0526720:intron | 40.0% | |
| TGGACTTGGGAGAAAAGTTA+TGG | + | chr3_4:80764765-80764784 | None:intergenic | 40.0% | |
| GCGACATTGAGCATAGTTAA+TGG | + | chr3_4:80764785-80764804 | None:intergenic | 40.0% | |
| ! | TTTTCTCATCCAATTGGTGG+TGG | - | chr3_4:80764966-80764985 | Msa0526720:intron | 40.0% |
| ! | TTTCTCATCCAATTGGTGGT+GGG | - | chr3_4:80764967-80764986 | Msa0526720:intron | 40.0% |
| ! | CTACAGCTTTGTGTTTCCTT+TGG | - | chr3_4:80765148-80765167 | Msa0526720:intron | 40.0% |
| AAGTCCCAAACCACATATGA+TGG | + | chr3_4:80765425-80765444 | None:intergenic | 40.0% | |
| ! | TCATATGTGGTTTGGGACTT+TGG | - | chr3_4:80765425-80765444 | Msa0526720:intron | 40.0% |
| ! | GTTTGGGACTTTGGTATATG+TGG | - | chr3_4:80765434-80765453 | Msa0526720:intron | 40.0% |
| TTCTTACCGAGACTTGTCTA+TGG | + | chr3_4:80765465-80765484 | None:intergenic | 40.0% | |
| GATCATACAAATGGTAGCCT+AGG | - | chr3_4:80765490-80765509 | Msa0526720:intron | 40.0% | |
| TTATGATGTCGAGTAAGCTG+TGG | - | chr3_4:80765618-80765637 | Msa0526720:intron | 40.0% | |
| ! | AAGGTTTTCCCTACTAGGTA+AGG | + | chr3_4:80765650-80765669 | None:intergenic | 40.0% |
| ! | CAATGAAGGTTTTCCCTACT+AGG | + | chr3_4:80765655-80765674 | None:intergenic | 40.0% |
| AGAGGAAACTAACAACTACG+TGG | + | chr3_4:80766043-80766062 | None:intergenic | 40.0% | |
| CTTATCGTTTCTTCTGCTAG+AGG | + | chr3_4:80766061-80766080 | None:intergenic | 40.0% | |
| GTCTCCCATATTCACAGATT+TGG | - | chr3_4:80766271-80766290 | Msa0526720:intron | 40.0% | |
| GGAGACCAAATCTGTGAATA+TGG | + | chr3_4:80766279-80766298 | None:intergenic | 40.0% | |
| ! | TTCAATCTCAAAGGCGTAAG+TGG | + | chr3_4:80766336-80766355 | None:intergenic | 40.0% |
| AGCATCTCACATTCTCACTT+GGG | + | chr3_4:80766372-80766391 | None:intergenic | 40.0% | |
| AGTTGAAACAACGGACATGA+AGG | - | chr3_4:80766714-80766733 | Msa0526720:CDS | 40.0% | |
| GTTGAAACAACGGACATGAA+GGG | - | chr3_4:80766715-80766734 | Msa0526720:CDS | 40.0% | |
| GAAGGGTTTGAAGAAGATTG+AGG | - | chr3_4:80766732-80766751 | Msa0526720:CDS | 40.0% | |
| GATGTAATGTTCAAGCTGCA+TGG | - | chr3_4:80766943-80766962 | Msa0526720:CDS | 40.0% | |
| TTGGAGCTAGACTACATTGA+CGG | - | chr3_4:80767041-80767060 | Msa0526720:intron | 40.0% | |
| TACTTGACCCTTGTGAACAG+CGG | + | chr3_4:80762809-80762828 | None:intergenic | 45.0% | |
| TCTCCCCAACGCTATTAAAC+AGG | - | chr3_4:80762988-80763007 | Msa0526720:three_prime_UTR | 45.0% | |
| CCGAACCTGTTTAATAGCGT+TGG | + | chr3_4:80762996-80763015 | None:intergenic | 45.0% | |
| ! | CGGAGTGTTAAGTGTACATG+TGG | + | chr3_4:80763344-80763363 | None:intergenic | 45.0% |
| CATGTGTCAAACACCTGAAC+TGG | + | chr3_4:80763389-80763408 | None:intergenic | 45.0% | |
| !! | AGCCAGAGCAAAGCATTGTA+TGG | - | chr3_4:80763651-80763670 | Msa0526720:intron | 45.0% |
| GTCCATACAATGCTTTGCTC+TGG | + | chr3_4:80763656-80763675 | None:intergenic | 45.0% | |
| !! | ATGGACTAGCCCACCAAAAT+TGG | - | chr3_4:80763670-80763689 | Msa0526720:intron | 45.0% |
| ! | TTATCCCCGGTTGCCAATTT+TGG | + | chr3_4:80763686-80763705 | None:intergenic | 45.0% |
| GATTTCAATGACTACCCTCC+AGG | + | chr3_4:80763768-80763787 | None:intergenic | 45.0% | |
| CTTATCCAACTAAGTGGGGT+TGG | + | chr3_4:80764167-80764186 | None:intergenic | 45.0% | |
| CAACCCCACTTAGTTGGATA+AGG | - | chr3_4:80764165-80764184 | Msa0526720:intron | 45.0% | |
| GGAAAAGAGCTTCACTGTCT+TGG | + | chr3_4:80764551-80764570 | None:intergenic | 45.0% | |
| GAATCCCATGTGTTCCTTGT+TGG | + | chr3_4:80764572-80764591 | None:intergenic | 45.0% | |
| ACAAGGAACACATGGGATTC+AGG | - | chr3_4:80764572-80764591 | Msa0526720:intron | 45.0% | |
| CATGGGATTCAGGTATAGCT+TGG | - | chr3_4:80764582-80764601 | Msa0526720:intron | 45.0% | |
| ! | GCAACTACCTTGAGGTTTTC+AGG | + | chr3_4:80764741-80764760 | None:intergenic | 45.0% |
| GTTATGGAGCAACTACCTTG+AGG | + | chr3_4:80764749-80764768 | None:intergenic | 45.0% | |
| GTCACAGCAGAACTGATAGA+TGG | + | chr3_4:80765117-80765136 | None:intergenic | 45.0% | |
| ATACCCCAAATAAAGGGGTG+AGG | + | chr3_4:80765237-80765256 | None:intergenic | 45.0% | |
| ! | TATACATTTGGGGTGGTCGA+TGG | - | chr3_4:80765319-80765338 | Msa0526720:CDS | 45.0% |
| ! | ATACATTTGGGGTGGTCGAT+GGG | - | chr3_4:80765320-80765339 | Msa0526720:CDS | 45.0% |
| GAGAAGCCATAGACAAGTCT+CGG | - | chr3_4:80765456-80765475 | Msa0526720:intron | 45.0% | |
| CTCTTACTGAGACTTGCCTA+TGG | + | chr3_4:80765828-80765847 | None:intergenic | 45.0% | |
| CATAGGCAAGTCTCAGTAAG+AGG | - | chr3_4:80765826-80765845 | Msa0526720:intron | 45.0% | |
| TGGAGGTGACTTTACCTAGT+AGG | - | chr3_4:80765993-80766012 | Msa0526720:intron | 45.0% | |
| GGAGGTGACTTTACCTAGTA+GGG | - | chr3_4:80765994-80766013 | Msa0526720:intron | 45.0% | |
| GGTGTGTCGTATTGCCATAT+TGG | - | chr3_4:80766132-80766151 | Msa0526720:intron | 45.0% | |
| GTAAGTGGAGAAATGGCCAT+TGG | + | chr3_4:80766321-80766340 | None:intergenic | 45.0% | |
| ! | CAAAGGCGTAAGTGGAGAAA+TGG | + | chr3_4:80766328-80766347 | None:intergenic | 45.0% |
| CAGCATCTCACATTCTCACT+TGG | + | chr3_4:80766373-80766392 | None:intergenic | 45.0% | |
| GAGAATGTGAGATGCTGATG+TGG | - | chr3_4:80766376-80766395 | Msa0526720:intron | 45.0% | |
| AGCATTTCCAAATGCACAGG+TGG | - | chr3_4:80766585-80766604 | Msa0526720:intron | 45.0% | |
| GCATTTCCAAATGCACAGGT+GGG | - | chr3_4:80766586-80766605 | Msa0526720:intron | 45.0% | |
| CATTTCCAAATGCACAGGTG+GGG | - | chr3_4:80766587-80766606 | Msa0526720:intron | 45.0% | |
| CACCAAATTGTGGCGTGTAT+GGG | - | chr3_4:80767164-80767183 | Msa0526720:five_prime_UTR | 45.0% | |
| AACCCATACACGCCACAATT+TGG | + | chr3_4:80767169-80767188 | None:intergenic | 45.0% | |
| AATTGTGGCGTGTATGGGTT+CGG | - | chr3_4:80767169-80767188 | Msa0526720:five_prime_UTR | 45.0% | |
| ! | ATTGAAGGCGTGTCCAGTTC+AGG | - | chr3_4:80763373-80763392 | Msa0526720:intron | 50.0% |
| ! | GAATGCGAATCCCCCCATTT+TGG | - | chr3_4:80763515-80763534 | Msa0526720:intron | 50.0% |
| AGCCCACCAAAATTGGCAAC+CGG | - | chr3_4:80763677-80763696 | Msa0526720:intron | 50.0% | |
| !! | GAACCCATTTGGGTTGGCTT+GGG | + | chr3_4:80763746-80763765 | None:intergenic | 50.0% |
| ! | AACCCAAATGGGTTCCTGGA+GGG | - | chr3_4:80763751-80763770 | Msa0526720:intron | 50.0% |
| TACCCTCCAGGAACCCATTT+GGG | + | chr3_4:80763756-80763775 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTAGT+TGG | - | chr3_4:80764159-80764178 | Msa0526720:intron | 50.0% | |
| AAGTTGCTCCCACCACCAAT+TGG | + | chr3_4:80764978-80764997 | None:intergenic | 50.0% | |
| TGATGTCGAGTAAGCTGTGG+AGG | - | chr3_4:80765621-80765640 | Msa0526720:intron | 50.0% | |
| TGGAGGTGACCTTACCTAGT+AGG | - | chr3_4:80765638-80765657 | Msa0526720:intron | 50.0% | |
| GGAGGTGACCTTACCTAGTA+GGG | - | chr3_4:80765639-80765658 | Msa0526720:intron | 50.0% | |
| GGTGTATGTGCAGAAGCCAT+AGG | - | chr3_4:80765809-80765828 | Msa0526720:intron | 50.0% | |
| ! | TTTTGCCCCACCTGTGCATT+TGG | + | chr3_4:80766595-80766614 | None:intergenic | 50.0% |
| TCTGCACATCCATCTACCCT+TGG | - | chr3_4:80766789-80766808 | Msa0526720:intron | 50.0% | |
| CCATACACGCCACAATTTGG+TGG | + | chr3_4:80767166-80767185 | None:intergenic | 50.0% | |
| CCACCAAATTGTGGCGTGTA+TGG | - | chr3_4:80767163-80767182 | Msa0526720:five_prime_UTR | 50.0% | |
| TTGACCCTTGTGAACAGCGG+TGG | + | chr3_4:80762806-80762825 | None:intergenic | 55.0% | |
| CCAATCCCACCATCCACTTG+CGG | - | chr3_4:80763617-80763636 | Msa0526720:intron | 55.0% | |
| CAATCCCACCATCCACTTGC+GGG | - | chr3_4:80763618-80763637 | Msa0526720:intron | 55.0% | |
| AATCCCACCATCCACTTGCG+GGG | - | chr3_4:80763619-80763638 | Msa0526720:intron | 55.0% | |
| CTTTAAACAGCCCCCGCAAG+TGG | + | chr3_4:80763633-80763652 | None:intergenic | 55.0% | |
| GCCCACCAAAATTGGCAACC+GGG | - | chr3_4:80763678-80763697 | Msa0526720:intron | 55.0% | |
| !! | CCCCGGTTGCCAATTTTGGT+GGG | + | chr3_4:80763682-80763701 | None:intergenic | 55.0% |
| CCCACCAAAATTGGCAACCG+GGG | - | chr3_4:80763679-80763698 | Msa0526720:intron | 55.0% | |
| ! | TCCCCGGTTGCCAATTTTGG+TGG | + | chr3_4:80763683-80763702 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr3_4:80763721-80763740 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr3_4:80763719-80763738 | Msa0526720:intron | 55.0% |
| !! | TTTGGGTTGGCTTGGGACCT+TGG | + | chr3_4:80763739-80763758 | None:intergenic | 55.0% |
| AGGTCCCAAGCCAACCCAAA+TGG | - | chr3_4:80763739-80763758 | Msa0526720:intron | 55.0% | |
| GGTCCCAAGCCAACCCAAAT+GGG | - | chr3_4:80763740-80763759 | Msa0526720:intron | 55.0% | |
| !! | GGAACCCATTTGGGTTGGCT+TGG | + | chr3_4:80763747-80763766 | None:intergenic | 55.0% |
| ! | AGCCAACCCAAATGGGTTCC+TGG | - | chr3_4:80763747-80763766 | Msa0526720:intron | 55.0% |
| CTCCAGGAACCCATTTGGGT+TGG | + | chr3_4:80763752-80763771 | None:intergenic | 55.0% | |
| ! | CAACCCAAATGGGTTCCTGG+AGG | - | chr3_4:80763750-80763769 | Msa0526720:intron | 55.0% |
| CTACCCTCCAGGAACCCATT+TGG | + | chr3_4:80763757-80763776 | None:intergenic | 55.0% | |
| AATAAAGGGGTGAGGCGGGA+GGG | + | chr3_4:80765229-80765248 | None:intergenic | 55.0% | |
| AAATAAAGGGGTGAGGCGGG+AGG | + | chr3_4:80765230-80765249 | None:intergenic | 55.0% | |
| TCCCGCCTCACCCCTTTATT+TGG | - | chr3_4:80765229-80765248 | Msa0526720:intron | 55.0% | |
| CCCAAATAAAGGGGTGAGGC+GGG | + | chr3_4:80765233-80765252 | None:intergenic | 55.0% | |
| ! | CCCGCCTCACCCCTTTATTT+GGG | - | chr3_4:80765230-80765249 | Msa0526720:intron | 55.0% |
| CCCCAAATAAAGGGGTGAGG+CGG | + | chr3_4:80765234-80765253 | None:intergenic | 55.0% | |
| ! | CCGCCTCACCCCTTTATTTG+GGG | - | chr3_4:80765231-80765250 | Msa0526720:intron | 55.0% |
| TCGAGCGAGCGAGCAATGTC+TGG | - | chr3_4:80762769-80762788 | Msa0526720:three_prime_UTR | 60.0% | |
| AGCCACCACCGCTGTTCACA+AGG | - | chr3_4:80762798-80762817 | Msa0526720:three_prime_UTR | 60.0% | |
| GCCACCACCGCTGTTCACAA+GGG | - | chr3_4:80762799-80762818 | Msa0526720:three_prime_UTR | 60.0% | |
| ACCCTTGTGAACAGCGGTGG+TGG | + | chr3_4:80762803-80762822 | None:intergenic | 60.0% | |
| !! | CCGCAAGTGGATGGTGGGAT+TGG | + | chr3_4:80763620-80763639 | None:intergenic | 60.0% |
| ATCCCACCATCCACTTGCGG+GGG | - | chr3_4:80763620-80763639 | Msa0526720:intron | 60.0% | |
| AAACAGCCCCCGCAAGTGGA+TGG | + | chr3_4:80763629-80763648 | None:intergenic | 60.0% | |
| ATAAAGGGGTGAGGCGGGAG+GGG | + | chr3_4:80765228-80765247 | None:intergenic | 60.0% | |
| AGCCCCCGCAAGTGGATGGT+GGG | + | chr3_4:80763625-80763644 | None:intergenic | 65.0% | |
| CAGCCCCCGCAAGTGGATGG+TGG | + | chr3_4:80763626-80763645 | None:intergenic | 70.0% | |
| GGCGGGAGGGGAGGGGAAAA+CGG | + | chr3_4:80765216-80765235 | None:intergenic | 70.0% | |
| AGGGGTGAGGCGGGAGGGGA+GGG | + | chr3_4:80765224-80765243 | None:intergenic | 75.0% | |
| AAGGGGTGAGGCGGGAGGGG+AGG | + | chr3_4:80765225-80765244 | None:intergenic | 75.0% | |
| ! | GGGGTGAGGCGGGAGGGGAG+GGG | + | chr3_4:80765223-80765242 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 80762694 | 80767217 | 80762694 | ID=Msa0526720;Name=Msa0526720 |
| chr3_4 | mRNA | 80762694 | 80767217 | 80762694 | ID=Msa0526720-mRNA-1;Parent=Msa0526720;Name=Msa0526720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|8|455|177 |
| chr3_4 | exon | 80762694 | 80763197 | 80762694 | ID=Msa0526720-mRNA-1:exon:24285;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80764810 | 80764887 | 80764810 | ID=Msa0526720-mRNA-1:exon:24284;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80764991 | 80765037 | 80764991 | ID=Msa0526720-mRNA-1:exon:24283;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80765159 | 80765216 | 80765159 | ID=Msa0526720-mRNA-1:exon:24282;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80765318 | 80765366 | 80765318 | ID=Msa0526720-mRNA-1:exon:24281;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80766677 | 80766800 | 80766677 | ID=Msa0526720-mRNA-1:exon:24280;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80766902 | 80766988 | 80766902 | ID=Msa0526720-mRNA-1:exon:24279;Parent=Msa0526720-mRNA-1 |
| chr3_4 | exon | 80767086 | 80767217 | 80767086 | ID=Msa0526720-mRNA-1:exon:24278;Parent=Msa0526720-mRNA-1 |
| chr3_4 | five_prime_UTR | 80767128 | 80767217 | 80767128 | ID=Msa0526720-mRNA-1:five_prime_utr;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80767086 | 80767127 | 80767086 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80766902 | 80766988 | 80766902 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80766677 | 80766800 | 80766677 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80765318 | 80765366 | 80765318 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80765159 | 80765216 | 80765159 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80764991 | 80765037 | 80764991 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80764810 | 80764887 | 80764810 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | CDS | 80763149 | 80763197 | 80763149 | ID=Msa0526720-mRNA-1:cds;Parent=Msa0526720-mRNA-1 |
| chr3_4 | three_prime_UTR | 80762694 | 80763148 | 80762694 | ID=Msa0526720-mRNA-1:three_prime_utr;Parent=Msa0526720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
