Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527170 | XP_003626947.1 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 9.38e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527170 | sp|Q41649|FKB15_VICFA | 93.233 | 133 | 9 | 0 | 14 | 146 | 16 | 148 | 9.93e-89 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527170 | G7LF65 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 4.48e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377600 | Msa0527170 | 0.821344 | 4.244897e-53 | -8.615850e-47 |
| Msa0527170 | Msa0656050 | 0.816220 | 6.187023e-52 | -8.615850e-47 |
| Msa0527170 | Msa0812590 | 0.841308 | 5.140820e-58 | -8.615850e-47 |
| Msa0527170 | Msa1230600 | 0.998895 | 7.618319e-281 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527170 | MtrunA17_Chr8g0339171 | 97.351 | 151 | 1 | 1 | 1 | 148 | 1 | 151 | 8.63e-104 | 293 |
| Msa0527170 | MtrunA17_Chr7g0234801 | 58.140 | 86 | 36 | 0 | 47 | 132 | 52 | 137 | 5.42e-28 | 107 |
| Msa0527170 | MtrunA17_Chr8g0339141 | 59.302 | 86 | 35 | 0 | 47 | 132 | 58 | 143 | 6.30e-27 | 105 |
| Msa0527170 | MtrunA17_Chr8g0377771 | 58.140 | 86 | 36 | 0 | 47 | 132 | 56 | 141 | 4.34e-26 | 102 |
| Msa0527170 | MtrunA17_Chr7g0255551 | 50.000 | 86 | 43 | 0 | 47 | 132 | 39 | 124 | 7.81e-25 | 99.0 |
| Msa0527170 | MtrunA17_Chr4g0052911 | 47.525 | 101 | 42 | 2 | 43 | 132 | 137 | 237 | 3.73e-23 | 90.9 |
| Msa0527170 | MtrunA17_Chr5g0435521 | 42.718 | 103 | 52 | 2 | 50 | 145 | 35 | 137 | 1.81e-20 | 82.8 |
| Msa0527170 | MtrunA17_Chr8g0382711 | 31.481 | 162 | 82 | 3 | 9 | 141 | 52 | 213 | 3.84e-20 | 82.4 |
| Msa0527170 | MtrunA17_Chr5g0396231 | 43.165 | 139 | 60 | 6 | 11 | 134 | 365 | 499 | 1.05e-19 | 84.3 |
| Msa0527170 | MtrunA17_Chr8g0352971 | 50.575 | 87 | 41 | 2 | 48 | 132 | 18 | 104 | 1.43e-18 | 80.9 |
| Msa0527170 | MtrunA17_Chr4g0014351 | 41.573 | 89 | 52 | 0 | 47 | 135 | 781 | 869 | 2.43e-15 | 72.0 |
| Msa0527170 | MtrunA17_Chr4g0033841 | 38.000 | 100 | 58 | 2 | 47 | 142 | 130 | 229 | 2.67e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527170 | AT5G48580.1 | 75.714 | 140 | 34 | 0 | 4 | 143 | 9 | 148 | 3.28e-75 | 221 |
| Msa0527170 | AT3G25220.1 | 79.845 | 129 | 26 | 0 | 20 | 148 | 25 | 153 | 2.71e-73 | 216 |
| Msa0527170 | AT3G25230.1 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 2.43e-28 | 109 |
| Msa0527170 | AT3G25230.2 | 61.628 | 86 | 33 | 0 | 47 | 132 | 57 | 142 | 2.90e-28 | 108 |
| Msa0527170 | AT5G48570.1 | 58.621 | 87 | 36 | 0 | 47 | 133 | 65 | 151 | 7.93e-27 | 105 |
| Msa0527170 | AT5G45680.1 | 47.059 | 102 | 43 | 2 | 43 | 133 | 105 | 206 | 3.14e-24 | 93.6 |
| Msa0527170 | AT4G39710.1 | 34.375 | 160 | 75 | 4 | 2 | 132 | 50 | 208 | 5.57e-21 | 85.1 |
| Msa0527170 | AT4G39710.3 | 34.375 | 160 | 75 | 4 | 2 | 132 | 50 | 208 | 5.57e-21 | 85.1 |
| Msa0527170 | AT3G55520.2 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa0527170 | AT3G55520.3 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa0527170 | AT3G55520.1 | 44.762 | 105 | 51 | 2 | 50 | 147 | 35 | 139 | 1.03e-19 | 81.3 |
| Msa0527170 | AT4G25340.1 | 46.364 | 110 | 52 | 4 | 26 | 134 | 373 | 476 | 7.86e-19 | 82.0 |
| Msa0527170 | AT5G05420.1 | 47.312 | 93 | 46 | 3 | 43 | 134 | 52 | 142 | 1.01e-18 | 77.4 |
| Msa0527170 | AT3G12340.3 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.56e-15 | 71.6 |
| Msa0527170 | AT3G12340.2 | 43.478 | 92 | 50 | 2 | 44 | 134 | 287 | 377 | 3.56e-15 | 71.6 |
| Msa0527170 | AT3G12340.1 | 43.478 | 92 | 50 | 2 | 44 | 134 | 408 | 498 | 4.38e-15 | 71.6 |
| Msa0527170 | AT2G43560.1 | 40.449 | 89 | 49 | 2 | 47 | 131 | 124 | 212 | 2.36e-13 | 65.1 |
| Msa0527170 | AT2G43560.2 | 40.449 | 89 | 49 | 2 | 47 | 131 | 68 | 156 | 2.58e-13 | 63.9 |
| Msa0527170 | AT4G39710.2 | 32.000 | 100 | 50 | 1 | 12 | 93 | 59 | 158 | 1.03e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGATGTATTTAATTTAT+AGG | 0.174496 | 3_4:+81408493 | None:intergenic |
| TTTAGACAAATCAAAATTAA+TGG | 0.209015 | 3_4:-81408635 | Msa0527170:exon |
| ATAAATTAAATACATCTATT+TGG | 0.214425 | 3_4:-81408490 | Msa0527170:three_prime_UTR |
| AGGATGGGACCAAGGATTAT+TGG | 0.270076 | 3_4:-81409552 | Msa0527170:CDS |
| CAAGCTCGGTGTCAAATATA+AGG | 0.271808 | 3_4:+81408706 | None:intergenic |
| CGTGACATCAGCCTCTTTCT+TGG | 0.287375 | 3_4:+81412959 | None:intergenic |
| TGGTAATGAAAGCATTATTA+AGG | 0.297295 | 3_4:+81408570 | None:intergenic |
| ATAGATGTATTTAATTTATA+GGG | 0.299832 | 3_4:+81408494 | None:intergenic |
| TTAATGGAAGACTAGACTTT+TGG | 0.305728 | 3_4:-81408619 | Msa0527170:three_prime_UTR |
| ACCAACATCATGTGAAGTTC+AGG | 0.407504 | 3_4:-81412029 | Msa0527170:CDS |
| GGATGGGACCAAGGATTATT+GGG | 0.407821 | 3_4:-81409551 | Msa0527170:CDS |
| GTGATAAATACCTGGAATAG+TGG | 0.410355 | 3_4:+81409457 | None:intergenic |
| CCACCAAGCTCAAAATCAAT+TGG | 0.428908 | 3_4:+81410859 | None:intergenic |
| GGTTCCCCACCCACTATTCC+AGG | 0.429923 | 3_4:-81409467 | Msa0527170:intron |
| GGAGTTGCAGATTGGCGTTA+AGG | 0.461491 | 3_4:-81412937 | Msa0527170:intron |
| ACCAAGTGTTTCTCTCTCGT+TGG | 0.463274 | 3_4:+81413256 | None:intergenic |
| AAAACTTGGCTATGGAGAGC+AGG | 0.467684 | 3_4:-81409489 | Msa0527170:CDS |
| GTCATTGCATCAACATTACT+AGG | 0.477757 | 3_4:-81413175 | Msa0527170:intron |
| GTCGTTCACTCCCACAAGCT+CGG | 0.479973 | 3_4:+81408692 | None:intergenic |
| TTAATTTCTTGCAATTGAGT+TGG | 0.481555 | 3_4:-81408413 | Msa0527170:three_prime_UTR |
| CTGAAAATACCAGCAAAACT+TGG | 0.484203 | 3_4:-81409503 | Msa0527170:CDS |
| ATATTTGACACCGAGCTTGT+GGG | 0.490987 | 3_4:-81408702 | Msa0527170:CDS |
| ATAAAGTGAAAGTACACTAT+CGG | 0.499659 | 3_4:-81411994 | Msa0527170:CDS |
| ATACCAGCAAAACTTGGCTA+TGG | 0.519186 | 3_4:-81409497 | Msa0527170:CDS |
| TATATTTGACACCGAGCTTG+TGG | 0.522619 | 3_4:-81408703 | Msa0527170:CDS |
| TTCTTTGCAGGATGGGACCA+AGG | 0.523846 | 3_4:-81409560 | Msa0527170:intron |
| TAAAGTGAAAGTACACTATC+GGG | 0.529261 | 3_4:-81411993 | Msa0527170:intron |
| AAGCTCGGTGTCAAATATAA+GGG | 0.529495 | 3_4:+81408707 | None:intergenic |
| CTAAGTTTCTGCCAAGAAAG+AGG | 0.532780 | 3_4:-81412970 | Msa0527170:intron |
| GACACATTCCCAATAATCCT+TGG | 0.533580 | 3_4:+81409543 | None:intergenic |
| GCCTGAACTTCACATGATGT+TGG | 0.549979 | 3_4:+81412028 | None:intergenic |
| AATACCTGGAATAGTGGGTG+GGG | 0.552424 | 3_4:+81409463 | None:intergenic |
| GATGTCACGGAGTTGCAGAT+TGG | 0.562827 | 3_4:-81412945 | Msa0527170:CDS |
| TAATAATGCTTTCATTACCA+AGG | 0.566466 | 3_4:-81408567 | Msa0527170:three_prime_UTR |
| GGATTATTGGGAATGTGTCT+TGG | 0.579154 | 3_4:-81409539 | Msa0527170:CDS |
| CAAGAAAGAGGCTGATGTCA+CGG | 0.579757 | 3_4:-81412958 | Msa0527170:CDS |
| AGAGTTAGACAATGAAACCT+TGG | 0.585805 | 3_4:+81408550 | None:intergenic |
| AAATACCTGGAATAGTGGGT+GGG | 0.603802 | 3_4:+81409462 | None:intergenic |
| AGAATCAAATACAGTTCCAT+CGG | 0.607844 | 3_4:+81410900 | None:intergenic |
| AAACTTGGCTATGGAGAGCA+GGG | 0.608629 | 3_4:-81409488 | Msa0527170:CDS |
| TGATAAATACCTGGAATAGT+GGG | 0.608996 | 3_4:+81409458 | None:intergenic |
| TAAATACCTGGAATAGTGGG+TGG | 0.614273 | 3_4:+81409461 | None:intergenic |
| GGTGGTGGTCAAGTGATCAA+AGG | 0.629184 | 3_4:-81410841 | Msa0527170:intron |
| TTGCAGGGAAAACTCACCGA+TGG | 0.633072 | 3_4:-81410916 | Msa0527170:intron |
| TTTCATTGTCTAACTCTGTG+AGG | 0.662564 | 3_4:-81408544 | Msa0527170:three_prime_UTR |
| TGTGAAGTTCAGGCACACAA+AGG | 0.672019 | 3_4:-81412019 | Msa0527170:CDS |
| GAATGTGTCTTGGTGAGAAG+CGG | 0.678965 | 3_4:-81409529 | Msa0527170:CDS |
| TCCAACGAGAGAGAAACACT+TGG | 0.700023 | 3_4:-81413257 | Msa0527170:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTGAGATTATAA+CGG | - | chr3_4:81409448-81409467 | Msa0527170:intron | 10.0% |
| !! | AATGTTCATAAAATTTAATA+AGG | - | chr3_4:81409903-81409922 | Msa0527170:intron | 10.0% |
| !!! | TTAGTTTTATTACAAATTTT+TGG | - | chr3_4:81412012-81412031 | Msa0527170:CDS | 10.0% |
| !! | ATTAATAAATTTAGTTAGTT+AGG | + | chr3_4:81412865-81412884 | None:intergenic | 10.0% |
| !! | TAACTAAATTTATTAATGTA+TGG | - | chr3_4:81412868-81412887 | Msa0527170:intron | 10.0% |
| !!! | ATAGATGTATTTAATTTATA+GGG | + | chr3_4:81413157-81413176 | None:intergenic | 10.0% |
| !!! | AATAGATGTATTTAATTTAT+AGG | + | chr3_4:81413158-81413177 | None:intergenic | 10.0% |
| !! | ATAAATTAAATACATCTATT+TGG | - | chr3_4:81413158-81413177 | Msa0527170:intron | 10.0% |
| !!! | CAGATTTTGAATAAAATAAA+TGG | - | chr3_4:81408761-81408780 | Msa0527170:intron | 15.0% |
| !! | AATTAACATAAATATGGAAA+TGG | + | chr3_4:81409097-81409116 | None:intergenic | 15.0% |
| !!! | TTTTTTATTGAGATTATAAC+GGG | - | chr3_4:81409449-81409468 | Msa0527170:intron | 15.0% |
| !!! | TATTTTGTGTATAAGAAAAT+GGG | - | chr3_4:81409546-81409565 | Msa0527170:CDS | 15.0% |
| !!! | TGTTAGTCTAAAATTTAATA+AGG | - | chr3_4:81409931-81409950 | Msa0527170:intron | 15.0% |
| !!! | TTGTTTTAAAATAATTATGC+TGG | - | chr3_4:81410147-81410166 | Msa0527170:intron | 15.0% |
| !! | TTGCTCAAATTTAATTAATT+TGG | + | chr3_4:81411104-81411123 | None:intergenic | 15.0% |
| !!! | AAATTTTATGGATTTTTTGT+CGG | + | chr3_4:81411757-81411776 | None:intergenic | 15.0% |
| !! | GTAAAACAATGTTAAAATAA+CGG | - | chr3_4:81412782-81412801 | Msa0527170:intron | 15.0% |
| !! | AAATTTATTAATGTATGGTT+AGG | - | chr3_4:81412873-81412892 | Msa0527170:intron | 15.0% |
| !! | AATTTATTAATGTATGGTTA+GGG | - | chr3_4:81412874-81412893 | Msa0527170:intron | 15.0% |
| !! | TTTAGACAAATCAAAATTAA+TGG | - | chr3_4:81413013-81413032 | Msa0527170:intron | 15.0% |
| !! | ATAGAAATTGATGAATTGAA+GGG | + | chr3_4:81408617-81408636 | None:intergenic | 20.0% |
| !!! | TTTTGAATGTTGAAGAATTA+AGG | - | chr3_4:81409032-81409051 | Msa0527170:intron | 20.0% |
| !! | TTTGAATGTTGAAGAATTAA+GGG | - | chr3_4:81409033-81409052 | Msa0527170:intron | 20.0% |
| !! | CACACAAATTAACATAAATA+TGG | + | chr3_4:81409103-81409122 | None:intergenic | 20.0% |
| !! | TGTAATTATAGTTTCTTTGA+GGG | - | chr3_4:81409248-81409267 | Msa0527170:intron | 20.0% |
| !!! | CTATTTTGTGTATAAGAAAA+TGG | - | chr3_4:81409545-81409564 | Msa0527170:CDS | 20.0% |
| !! | AACCAAAAGAAAAAAAATGA+AGG | - | chr3_4:81409801-81409820 | Msa0527170:intron | 20.0% |
| !! | ACCAAAAGAAAAAAAATGAA+GGG | - | chr3_4:81409802-81409821 | Msa0527170:intron | 20.0% |
| !! | TTCATAAAATTTAATAAGGC+AGG | - | chr3_4:81409907-81409926 | Msa0527170:intron | 20.0% |
| !! | TCATAAAATTTAATAAGGCA+GGG | - | chr3_4:81409908-81409927 | Msa0527170:intron | 20.0% |
| !! | CTCTAAATATATATGATATG+AGG | - | chr3_4:81410045-81410064 | Msa0527170:intron | 20.0% |
| !!! | TATGTAGGTTTTCAAATTAA+AGG | + | chr3_4:81410178-81410197 | None:intergenic | 20.0% |
| !! | TCTCATTAAATACTACTATA+AGG | + | chr3_4:81410269-81410288 | None:intergenic | 20.0% |
| !! | ATAGTAGTATTTAATGAGAT+TGG | - | chr3_4:81410270-81410289 | Msa0527170:intron | 20.0% |
| !! | AAATATTTAATTGTCTTTGC+AGG | - | chr3_4:81410716-81410735 | Msa0527170:intron | 20.0% |
| !! | AATATTTAATTGTCTTTGCA+GGG | - | chr3_4:81410717-81410736 | Msa0527170:intron | 20.0% |
| !! | TCTACTAAGCATAATAATAT+AGG | + | chr3_4:81411163-81411182 | None:intergenic | 20.0% |
| !! | TATTTAATCTAAATCCTTGA+TGG | + | chr3_4:81411247-81411266 | None:intergenic | 20.0% |
| !! | CTTAACTATTAAATCATATC+TGG | + | chr3_4:81411278-81411297 | None:intergenic | 20.0% |
| !! | ATGATTTAATAGTTAAGACA+TGG | - | chr3_4:81411281-81411300 | Msa0527170:intron | 20.0% |
| !!! | AATTTTCTTAACATCCAAAA+GGG | + | chr3_4:81411388-81411407 | None:intergenic | 20.0% |
| !!! | AAATTTTCTTAACATCCAAA+AGG | + | chr3_4:81411389-81411408 | None:intergenic | 20.0% |
| !! | CAAAAAATCCATAAAATTTC+CGG | - | chr3_4:81411758-81411777 | Msa0527170:intron | 20.0% |
| !! | AAAAAATCCATAAAATTTCC+GGG | - | chr3_4:81411759-81411778 | Msa0527170:intron | 20.0% |
| !!! | CTGATTTACATTATTAGTTT+TGG | - | chr3_4:81412395-81412414 | Msa0527170:intron | 20.0% |
| !!! | GATTATTTTGTATTCAATGT+CGG | + | chr3_4:81412697-81412716 | None:intergenic | 20.0% |
| !!! | AAAATAATCTCATTTTGTGA+AGG | - | chr3_4:81412708-81412727 | Msa0527170:intron | 20.0% |
| !! | AATAAATTTCTCAAAATAGC+AGG | - | chr3_4:81412760-81412779 | Msa0527170:intron | 20.0% |
| !!! | ATTTTGATTTGTCTAAAGTT+CGG | + | chr3_4:81413010-81413029 | None:intergenic | 20.0% |
| ! | TAGAAATTGATGAATTGAAG+GGG | + | chr3_4:81408616-81408635 | None:intergenic | 25.0% |
| ! | GATAGAAATTGATGAATTGA+AGG | + | chr3_4:81408618-81408637 | None:intergenic | 25.0% |
| !!! | TTGGTATTTTTAAGTTGCTT+TGG | - | chr3_4:81408997-81409016 | Msa0527170:intron | 25.0% |
| ! | GTGTAATTATAGTTTCTTTG+AGG | - | chr3_4:81409247-81409266 | Msa0527170:intron | 25.0% |
| !! | TATGTTTTCATAACGTGATT+TGG | - | chr3_4:81409338-81409357 | Msa0527170:intron | 25.0% |
| !! | ATGTTTTCATAACGTGATTT+GGG | - | chr3_4:81409339-81409358 | Msa0527170:intron | 25.0% |
| !! | AATGTTGACTGATTGTTAAT+AGG | - | chr3_4:81409402-81409421 | Msa0527170:intron | 25.0% |
| !! | ATAAAGTGAAAGTACACTAT+CGG | - | chr3_4:81409654-81409673 | Msa0527170:intron | 25.0% |
| ! | CCAAAAGAAAAAAAATGAAG+GGG | - | chr3_4:81409803-81409822 | Msa0527170:intron | 25.0% |
| !! | AGTCTAAAATTTAATAAGGC+AGG | - | chr3_4:81409935-81409954 | Msa0527170:intron | 25.0% |
| !! | GTCTAAAATTTAATAAGGCA+GGG | - | chr3_4:81409936-81409955 | Msa0527170:intron | 25.0% |
| !!! | TGTTAGTCTTTTAGAGTTAA+AGG | - | chr3_4:81409959-81409978 | Msa0527170:intron | 25.0% |
| ! | AATGGATGAAAAGTTACAAA+AGG | + | chr3_4:81409999-81410018 | None:intergenic | 25.0% |
| ! | ACATAAAAATTTCTCCAAAC+AGG | + | chr3_4:81410324-81410343 | None:intergenic | 25.0% |
| ! | ATTGCAAAATGAAAGCTAAA+AGG | - | chr3_4:81410918-81410937 | Msa0527170:intron | 25.0% |
| ! | AGGATATAAACTAGTTCAAA+AGG | + | chr3_4:81411143-81411162 | None:intergenic | 25.0% |
| ! | GTTAAAATAGCAGATCATAA+TGG | - | chr3_4:81411466-81411485 | Msa0527170:intron | 25.0% |
| ! | AATTGACAGACATTTCTAAT+GGG | - | chr3_4:81411824-81411843 | Msa0527170:intron | 25.0% |
| ! | CATAAAATCTGGCAAAATAT+GGG | + | chr3_4:81411892-81411911 | None:intergenic | 25.0% |
| ! | ACATAAAATCTGGCAAAATA+TGG | + | chr3_4:81411893-81411912 | None:intergenic | 25.0% |
| ! | GATAACAAGAACATAAAATC+TGG | + | chr3_4:81411903-81411922 | None:intergenic | 25.0% |
| ! | TTGTTATCATTTAAGCTTTC+TGG | - | chr3_4:81411915-81411934 | Msa0527170:intron | 25.0% |
| ! | TCATCATATAATCATCTATC+TGG | + | chr3_4:81412056-81412075 | None:intergenic | 25.0% |
| !! | TTGAAATATGAAAGAGGTTT+TGG | + | chr3_4:81412253-81412272 | None:intergenic | 25.0% |
| ! | ACTAACTTGAAATATGAAAG+AGG | + | chr3_4:81412259-81412278 | None:intergenic | 25.0% |
| !!! | TGGTTTTGATTATCTGTTTT+AGG | - | chr3_4:81412415-81412434 | Msa0527170:intron | 25.0% |
| !! | TATGCCACTTAAAATATTAG+TGG | - | chr3_4:81412439-81412458 | Msa0527170:intron | 25.0% |
| !!! | TCTTCCACTAATATTTTAAG+TGG | + | chr3_4:81412446-81412465 | None:intergenic | 25.0% |
| !! | AATGTTCTTTTATGTCAATG+TGG | - | chr3_4:81412473-81412492 | Msa0527170:intron | 25.0% |
| ! | GTGAGTAATATGGTATTAAA+CGG | + | chr3_4:81412505-81412524 | None:intergenic | 25.0% |
| ! | GAAAAGTTATGTGAGTAATA+TGG | + | chr3_4:81412515-81412534 | None:intergenic | 25.0% |
| ! | CTAAATAAACTCATAATACG+AGG | + | chr3_4:81412737-81412756 | None:intergenic | 25.0% |
| ! | AGCAATACATGCTAAAAAAT+GGG | + | chr3_4:81412823-81412842 | None:intergenic | 25.0% |
| ! | AAGCAATACATGCTAAAAAA+TGG | + | chr3_4:81412824-81412843 | None:intergenic | 25.0% |
| !!! | TTTTAGCATGTATTGCTTTT+CGG | - | chr3_4:81412826-81412845 | Msa0527170:intron | 25.0% |
| !!! | TGGTAATGAAAGCATTATTA+AGG | + | chr3_4:81413081-81413100 | None:intergenic | 25.0% |
| ! | TAATAATGCTTTCATTACCA+AGG | - | chr3_4:81413081-81413100 | Msa0527170:intron | 25.0% |
| ! | TTAATTTCTTGCAATTGAGT+TGG | - | chr3_4:81413235-81413254 | Msa0527170:five_prime_UTR | 25.0% |
| GTGATGTGTTATGTGAAAAA+TGG | + | chr3_4:81408535-81408554 | None:intergenic | 30.0% | |
| AAATAGACACGTTTGATCAA+AGG | + | chr3_4:81408977-81408996 | None:intergenic | 30.0% | |
| ! | TGATCAAACGTGTCTATTTT+TGG | - | chr3_4:81408978-81408997 | Msa0527170:intron | 30.0% |
| ! | TTTTCTTCGTTCCAACAATT+GGG | + | chr3_4:81409135-81409154 | None:intergenic | 30.0% |
| ATTGTTATGTAACCGATACA+TGG | - | chr3_4:81409161-81409180 | Msa0527170:intron | 30.0% | |
| !! | ATGAAAATTTGCTGCATCAT+AGG | + | chr3_4:81409503-81409522 | None:intergenic | 30.0% |
| ! | TAAAGTGAAAGTACACTATC+GGG | - | chr3_4:81409655-81409674 | Msa0527170:intron | 30.0% |
| !!! | CCCCTTCATTTTTTTTCTTT+TGG | + | chr3_4:81409806-81409825 | None:intergenic | 30.0% |
| AAGAAAAAAAATGAAGGGGA+AGG | - | chr3_4:81409807-81409826 | Msa0527170:intron | 30.0% | |
| AGAAAAAAAATGAAGGGGAA+GGG | - | chr3_4:81409808-81409827 | Msa0527170:intron | 30.0% | |
| ATTTGGAGGGTCTTAAAATA+AGG | + | chr3_4:81409869-81409888 | None:intergenic | 30.0% | |
| !!! | TATTTTAAGACCCTCCAAAT+AGG | - | chr3_4:81409869-81409888 | Msa0527170:intron | 30.0% |
| !!! | ATTTTAAGACCCTCCAAATA+GGG | - | chr3_4:81409870-81409889 | Msa0527170:intron | 30.0% |
| !!! | ATTTTGAAGTTTCCCCTATT+TGG | + | chr3_4:81409886-81409905 | None:intergenic | 30.0% |
| AAATTGCAAATAGACGAGAA+TGG | + | chr3_4:81410017-81410036 | None:intergenic | 30.0% | |
| ! | AGGTTTTCAAATTAAAGGAC+AGG | + | chr3_4:81410173-81410192 | None:intergenic | 30.0% |
| ! | CATTGATTATATGTTCCCTA+TGG | - | chr3_4:81410223-81410242 | Msa0527170:intron | 30.0% |
| AGGATAGGAAATTAATCATC+AGG | + | chr3_4:81410304-81410323 | None:intergenic | 30.0% | |
| GATTAATTTCCTATCCTGTT+TGG | - | chr3_4:81410307-81410326 | Msa0527170:intron | 30.0% | |
| AAAATTTCTCCAAACAGGAT+AGG | + | chr3_4:81410319-81410338 | None:intergenic | 30.0% | |
| AGTATTCATTGCTCTCTAAA+CGG | + | chr3_4:81410456-81410475 | None:intergenic | 30.0% | |
| TTTAGAGAGCAATGAATACT+TGG | - | chr3_4:81410456-81410475 | Msa0527170:intron | 30.0% | |
| CACAGATAACACAATCAAAA+TGG | + | chr3_4:81410530-81410549 | None:intergenic | 30.0% | |
| TCAGTTATACTTATATCGAG+TGG | - | chr3_4:81410574-81410593 | Msa0527170:intron | 30.0% | |
| CAAAATTCTTCAAAGCATGT+AGG | + | chr3_4:81410600-81410619 | None:intergenic | 30.0% | |
| CATCACAAGAACAAATGAAA+TGG | + | chr3_4:81410638-81410657 | None:intergenic | 30.0% | |
| AGAATCAAATACAGTTCCAT+CGG | + | chr3_4:81410751-81410770 | None:intergenic | 30.0% | |
| !! | AATCCAATTGATTTTGAGCT+TGG | - | chr3_4:81410786-81410805 | Msa0527170:intron | 30.0% |
| ! | CTTAAGATTTTACTCCCTTT+TGG | - | chr3_4:81411371-81411390 | Msa0527170:intron | 30.0% |
| GAATTGACAGACATTTCTAA+TGG | - | chr3_4:81411823-81411842 | Msa0527170:intron | 30.0% | |
| ! | ATGGTTTACTATAACTTGCA+TGG | - | chr3_4:81411956-81411975 | Msa0527170:intron | 30.0% |
| ! | TGGTTTACTATAACTTGCAT+GGG | - | chr3_4:81411957-81411976 | Msa0527170:intron | 30.0% |
| TGATAAATACCTGGAATAGT+GGG | + | chr3_4:81412193-81412212 | None:intergenic | 30.0% | |
| TTACTAACGTGATAAATACC+TGG | + | chr3_4:81412202-81412221 | None:intergenic | 30.0% | |
| TTATCCAACAGCTAAATATC+TGG | - | chr3_4:81412286-81412305 | Msa0527170:intron | 30.0% | |
| ATATCCAGATATTTAGCTGT+TGG | + | chr3_4:81412293-81412312 | None:intergenic | 30.0% | |
| ! | TTACTCACATAACTTTTCGA+AGG | - | chr3_4:81412517-81412536 | Msa0527170:intron | 30.0% |
| CAACAATTGTGATTGATTGA+AGG | + | chr3_4:81412583-81412602 | None:intergenic | 30.0% | |
| ! | ATGTCGGAGTAAAAATGTTT+TGG | + | chr3_4:81412681-81412700 | None:intergenic | 30.0% |
| ! | ATAATCTCATTTTGTGAAGG+AGG | - | chr3_4:81412711-81412730 | Msa0527170:intron | 30.0% |
| ATACATGCTAAAAAATGGGA+TGG | + | chr3_4:81412819-81412838 | None:intergenic | 30.0% | |
| ! | TTAATGGAAGACTAGACTTT+TGG | - | chr3_4:81413029-81413048 | Msa0527170:intron | 30.0% |
| GTCATTGCATCAACATTACT+AGG | - | chr3_4:81408473-81408492 | Msa0527170:three_prime_UTR | 35.0% | |
| !! | TGTTGATGATTCCCAATTGT+TGG | - | chr3_4:81409121-81409140 | Msa0527170:intron | 35.0% |
| ! | CTTTTCTTCGTTCCAACAAT+TGG | + | chr3_4:81409136-81409155 | None:intergenic | 35.0% |
| AAAAGTGGATGTCCATGTAT+CGG | + | chr3_4:81409176-81409195 | None:intergenic | 35.0% | |
| !!! | ACATCCACTTTTTGTTGGAA+TGG | - | chr3_4:81409184-81409203 | Msa0527170:intron | 35.0% |
| CAATCCATTCCAACAAAAAG+TGG | + | chr3_4:81409191-81409210 | None:intergenic | 35.0% | |
| ! | TTATAGTTTCTTTGAGGGTC+AGG | - | chr3_4:81409253-81409272 | Msa0527170:intron | 35.0% |
| !! | AATTTGCTGCATCATAGGTA+GGG | + | chr3_4:81409498-81409517 | None:intergenic | 35.0% |
| !! | AAATTTGCTGCATCATAGGT+AGG | + | chr3_4:81409499-81409518 | None:intergenic | 35.0% |
| AAGCATAAAGAGTAACCTCA+AGG | - | chr3_4:81409740-81409759 | Msa0527170:intron | 35.0% | |
| AGCATAAAGAGTAACCTCAA+GGG | - | chr3_4:81409741-81409760 | Msa0527170:intron | 35.0% | |
| ATGTTGGAAATGTTTGTGAG+AGG | - | chr3_4:81409765-81409784 | Msa0527170:intron | 35.0% | |
| TGTTGGAAATGTTTGTGAGA+GGG | - | chr3_4:81409766-81409785 | Msa0527170:intron | 35.0% | |
| GAAAAAAAATGAAGGGGAAG+GGG | - | chr3_4:81409809-81409828 | Msa0527170:intron | 35.0% | |
| !!! | TTTTAAGACCCTCCAAATAG+GGG | - | chr3_4:81409871-81409890 | Msa0527170:intron | 35.0% |
| ATTACATGCACAACATCTCA+TGG | - | chr3_4:81410078-81410097 | Msa0527170:intron | 35.0% | |
| AGTTCATCATCAGAACCATA+GGG | + | chr3_4:81410241-81410260 | None:intergenic | 35.0% | |
| TAGTTCATCATCAGAACCAT+AGG | + | chr3_4:81410242-81410261 | None:intergenic | 35.0% | |
| AATTTCTTCTTGATCCTCCT+TGG | - | chr3_4:81410381-81410400 | Msa0527170:intron | 35.0% | |
| TCAAAATGTATATGCCACCA+AGG | + | chr3_4:81410401-81410420 | None:intergenic | 35.0% | |
| GTATTCATTGCTCTCTAAAC+GGG | + | chr3_4:81410455-81410474 | None:intergenic | 35.0% | |
| AGAGCAATGAATACTTGGTA+AGG | - | chr3_4:81410461-81410480 | Msa0527170:intron | 35.0% | |
| TGTGATTGTGAGCAAGTTAT+AGG | + | chr3_4:81410489-81410508 | None:intergenic | 35.0% | |
| ! | AACTTGCTCACAATCACAAT+CGG | - | chr3_4:81410491-81410510 | Msa0527170:intron | 35.0% |
| TTCTTGTGATGACTGATGAA+GGG | - | chr3_4:81410647-81410666 | Msa0527170:intron | 35.0% | |
| AAAAGAACGAGAGTTATGTG+TGG | + | chr3_4:81410844-81410863 | None:intergenic | 35.0% | |
| ! | CTCTCGTTCTTTTGAATTTC+TGG | - | chr3_4:81410851-81410870 | Msa0527170:CDS | 35.0% |
| GTCTCCTATGACAAGTAAAA+TGG | - | chr3_4:81411058-81411077 | Msa0527170:intron | 35.0% | |
| !! | TCAGCCATTTTACTTGTCAT+AGG | + | chr3_4:81411065-81411084 | None:intergenic | 35.0% |
| !!! | AAAAGCCTTTTTCGACAAAG+GGG | + | chr3_4:81411334-81411353 | None:intergenic | 35.0% |
| !!! | CAAAAGCCTTTTTCGACAAA+GGG | + | chr3_4:81411335-81411354 | None:intergenic | 35.0% |
| ACACCATATCAATCTGAGAA+TGG | - | chr3_4:81411409-81411428 | Msa0527170:intron | 35.0% | |
| CACCATATCAATCTGAGAAT+GGG | - | chr3_4:81411410-81411429 | Msa0527170:intron | 35.0% | |
| TTCCCATTCTCAGATTGATA+TGG | + | chr3_4:81411415-81411434 | None:intergenic | 35.0% | |
| AACATATAGTTCACGCTCTT+TGG | + | chr3_4:81411449-81411468 | None:intergenic | 35.0% | |
| AGCAAAAGTTTACCTCACAA+AGG | - | chr3_4:81411521-81411540 | Msa0527170:intron | 35.0% | |
| GCAAAAGTTTACCTCACAAA+GGG | - | chr3_4:81411522-81411541 | Msa0527170:intron | 35.0% | |
| ! | TTCTCTTTTGGCAGAAAACA+AGG | + | chr3_4:81411612-81411631 | None:intergenic | 35.0% |
| ! | GATCTATCCCGGAAATTTTA+TGG | + | chr3_4:81411769-81411788 | None:intergenic | 35.0% |
| !!! | TGCTTTTTCTGCGTTTGTAT+AGG | + | chr3_4:81411795-81411814 | None:intergenic | 35.0% |
| GTTATAGTAAACCATACCGT+GGG | + | chr3_4:81411951-81411970 | None:intergenic | 35.0% | |
| AGTTATAGTAAACCATACCG+TGG | + | chr3_4:81411952-81411971 | None:intergenic | 35.0% | |
| CTGAAAATACCAGCAAAACT+TGG | - | chr3_4:81412145-81412164 | Msa0527170:intron | 35.0% | |
| GTGATAAATACCTGGAATAG+TGG | + | chr3_4:81412194-81412213 | None:intergenic | 35.0% | |
| AATATGGCAGTTGAGGAAAA+CGG | + | chr3_4:81412316-81412335 | None:intergenic | 35.0% | |
| TACCAAACTGTAGACCAATA+TGG | + | chr3_4:81412332-81412351 | None:intergenic | 35.0% | |
| ! | GGTAGACGAGTATTTTATCT+TGG | - | chr3_4:81412348-81412367 | Msa0527170:intron | 35.0% |
| ATACCTTACAAGTCATACAG+TGG | - | chr3_4:81412634-81412653 | Msa0527170:intron | 35.0% | |
| ! | TATCCACTGTATGACTTGTA+AGG | + | chr3_4:81412640-81412659 | None:intergenic | 35.0% |
| TACAGTGGATACTTTGTGAT+TGG | - | chr3_4:81412649-81412668 | Msa0527170:intron | 35.0% | |
| !! | AAGCTCGGTGTCAAATATAA+GGG | + | chr3_4:81412944-81412963 | None:intergenic | 35.0% |
| AGAGTTAGACAATGAAACCT+TGG | + | chr3_4:81413101-81413120 | None:intergenic | 35.0% | |
| TTTCATTGTCTAACTCTGTG+AGG | - | chr3_4:81413104-81413123 | Msa0527170:intron | 35.0% | |
| ! | GCTTTCGTGAGAATTTTCAT+TGG | - | chr3_4:81413200-81413219 | Msa0527170:CDS | 35.0% |
| CTAAGTTTCTGCCAAGAAAG+AGG | - | chr3_4:81408678-81408697 | Msa0527170:CDS | 40.0% | |
| !!! | CATGGACATCCACTTTTTGT+TGG | - | chr3_4:81409179-81409198 | Msa0527170:intron | 40.0% |
| ACCAACATCATGTGAAGTTC+AGG | - | chr3_4:81409619-81409638 | Msa0527170:intron | 40.0% | |
| ACATTTCCAACATTCCCTTG+AGG | + | chr3_4:81409758-81409777 | None:intergenic | 40.0% | |
| GTTGGAAATGTTTGTGAGAG+GGG | - | chr3_4:81409767-81409786 | Msa0527170:intron | 40.0% | |
| AGAAGATGGGAGTAGTTAGT+TGG | - | chr3_4:81409843-81409862 | Msa0527170:intron | 40.0% | |
| TGAAGTTTCCCCTATTTGGA+GGG | + | chr3_4:81409882-81409901 | None:intergenic | 40.0% | |
| TTGAAGTTTCCCCTATTTGG+AGG | + | chr3_4:81409883-81409902 | None:intergenic | 40.0% | |
| GCTTCTGCATATGCTTATGT+AGG | + | chr3_4:81410193-81410212 | None:intergenic | 40.0% | |
| AAATGTATATGCCACCAAGG+AGG | + | chr3_4:81410398-81410417 | None:intergenic | 40.0% | |
| AACTGATTGACGTCAACAGA+AGG | + | chr3_4:81410560-81410579 | None:intergenic | 40.0% | |
| GTTCTTGTGATGACTGATGA+AGG | - | chr3_4:81410646-81410665 | Msa0527170:intron | 40.0% | |
| CCACCAAGCTCAAAATCAAT+TGG | + | chr3_4:81410792-81410811 | None:intergenic | 40.0% | |
| !! | CCAATTGATTTTGAGCTTGG+TGG | - | chr3_4:81410789-81410808 | Msa0527170:intron | 40.0% |
| !! | ATTGATTTTGAGCTTGGTGG+TGG | - | chr3_4:81410792-81410811 | Msa0527170:intron | 40.0% |
| TAATGAAATAGCTGCTGTGC+TGG | - | chr3_4:81410884-81410903 | Msa0527170:CDS | 40.0% | |
| !! | TGGCTGATTTGTAACATGTG+AGG | - | chr3_4:81411078-81411097 | Msa0527170:intron | 40.0% |
| GCTTAGTAGAAACCTGTGTA+AGG | - | chr3_4:81411173-81411192 | Msa0527170:intron | 40.0% | |
| TAGTAGAAACCTGTGTAAGG+AGG | - | chr3_4:81411176-81411195 | Msa0527170:intron | 40.0% | |
| AGTAGAAACCTGTGTAAGGA+GGG | - | chr3_4:81411177-81411196 | Msa0527170:intron | 40.0% | |
| GCTTTGCATGTAGTTTCTCT+GGG | + | chr3_4:81411225-81411244 | None:intergenic | 40.0% | |
| AACTACATGCAAAGCCATCA+AGG | - | chr3_4:81411230-81411249 | Msa0527170:intron | 40.0% | |
| !!! | GCAAAAGCCTTTTTCGACAA+AGG | + | chr3_4:81411336-81411355 | None:intergenic | 40.0% |
| ! | TTTTGGCAGAAAACAAGGAG+TGG | + | chr3_4:81411607-81411626 | None:intergenic | 40.0% |
| CCAAAAGAGAATCCAACGAT+GGG | - | chr3_4:81411621-81411640 | Msa0527170:intron | 40.0% | |
| CTTCGTGATGTTATTACTCG+CGG | - | chr3_4:81411659-81411678 | Msa0527170:intron | 40.0% | |
| TGTATAGGACTGATCTATCC+CGG | + | chr3_4:81411780-81411799 | None:intergenic | 40.0% | |
| TGACAGACATTTCTAATGGG+AGG | - | chr3_4:81411827-81411846 | Msa0527170:intron | 40.0% | |
| GACACATTCCCAATAATCCT+TGG | + | chr3_4:81412108-81412127 | None:intergenic | 40.0% | |
| GGATTATTGGGAATGTGTCT+TGG | - | chr3_4:81412109-81412128 | Msa0527170:intron | 40.0% | |
| ATACCAGCAAAACTTGGCTA+TGG | - | chr3_4:81412151-81412170 | Msa0527170:intron | 40.0% | |
| !! | AAATACCTGGAATAGTGGGT+GGG | + | chr3_4:81412189-81412208 | None:intergenic | 40.0% |
| ! | TAAATACCTGGAATAGTGGG+TGG | + | chr3_4:81412190-81412209 | None:intergenic | 40.0% |
| ! | GTTTTCCTCAACTGCCATAT+TGG | - | chr3_4:81412315-81412334 | Msa0527170:intron | 40.0% |
| ! | TGCCATATTGGTCTACAGTT+TGG | - | chr3_4:81412327-81412346 | Msa0527170:intron | 40.0% |
| !! | CAAGCTCGGTGTCAAATATA+AGG | + | chr3_4:81412945-81412964 | None:intergenic | 40.0% |
| TATATTTGACACCGAGCTTG+TGG | - | chr3_4:81412945-81412964 | Msa0527170:CDS | 40.0% | |
| ATATTTGACACCGAGCTTGT+GGG | - | chr3_4:81412946-81412965 | Msa0527170:CDS | 40.0% | |
| TCCAACGAGAGAGAAACACT+TGG | - | chr3_4:81408391-81408410 | Msa0527170:three_prime_UTR | 45.0% | |
| ACCAAGTGTTTCTCTCTCGT+TGG | + | chr3_4:81408395-81408414 | None:intergenic | 45.0% | |
| CAAGAAAGAGGCTGATGTCA+CGG | - | chr3_4:81408690-81408709 | Msa0527170:CDS | 45.0% | |
| CACATGTGTCAGTGTCATGT+TGG | - | chr3_4:81408917-81408936 | Msa0527170:intron | 45.0% | |
| ! | GTCATGTTGGTGTCTCATGT+TGG | - | chr3_4:81408930-81408949 | Msa0527170:intron | 45.0% |
| ! | TTGATCAAAGGTGTGTCTGG+TGG | + | chr3_4:81408965-81408984 | None:intergenic | 45.0% |
| ! | CGTTTGATCAAAGGTGTGTC+TGG | + | chr3_4:81408968-81408987 | None:intergenic | 45.0% |
| CAGTAAAAGCCTTGCTAGCA+AGG | - | chr3_4:81409370-81409389 | Msa0527170:intron | 45.0% | |
| GCCTGAACTTCACATGATGT+TGG | + | chr3_4:81409623-81409642 | None:intergenic | 45.0% | |
| TGTGAAGTTCAGGCACACAA+AGG | - | chr3_4:81409629-81409648 | Msa0527170:intron | 45.0% | |
| GAGTAACCTCAAGGGAATGT+TGG | - | chr3_4:81409749-81409768 | Msa0527170:intron | 45.0% | |
| GAAATGTTTGTGAGAGGGGA+AGG | - | chr3_4:81409771-81409790 | Msa0527170:intron | 45.0% | |
| TTGTGAGAGGGGAAGGATTA+AGG | - | chr3_4:81409778-81409797 | Msa0527170:intron | 45.0% | |
| AAAAATGAAGGGGAAGGGGA+AGG | - | chr3_4:81409813-81409832 | Msa0527170:intron | 45.0% | |
| AAAATGAAGGGGAAGGGGAA+GGG | - | chr3_4:81409814-81409833 | Msa0527170:intron | 45.0% | |
| TTCTTCTTGATCCTCCTTGG+TGG | - | chr3_4:81410384-81410403 | Msa0527170:intron | 45.0% | |
| GTCTGTCAGGTTACATGTGA+AGG | + | chr3_4:81410428-81410447 | None:intergenic | 45.0% | |
| GATTGACGTCAACAGAAGGT+AGG | + | chr3_4:81410556-81410575 | None:intergenic | 45.0% | |
| TGCCAGATCATTGTAGCTCA+CGG | - | chr3_4:81410996-81411015 | Msa0527170:intron | 45.0% | |
| TTCCGTGAGCTACAATGATC+TGG | + | chr3_4:81411001-81411020 | None:intergenic | 45.0% | |
| ATCATTGTAGCTCACGGAAG+AGG | - | chr3_4:81411002-81411021 | Msa0527170:intron | 45.0% | |
| TCATTGTAGCTCACGGAAGA+GGG | - | chr3_4:81411003-81411022 | Msa0527170:intron | 45.0% | |
| AACAACTACCCTCCTTACAC+AGG | + | chr3_4:81411188-81411207 | None:intergenic | 45.0% | |
| TTGCATGTAGTTTCTCTGGG+TGG | + | chr3_4:81411222-81411241 | None:intergenic | 45.0% | |
| GGCTTTGCATGTAGTTTCTC+TGG | + | chr3_4:81411226-81411245 | None:intergenic | 45.0% | |
| GTCAACCCCTTTGTCGAAAA+AGG | - | chr3_4:81411326-81411345 | Msa0527170:intron | 45.0% | |
| GCCAAAAGAGAATCCAACGA+TGG | - | chr3_4:81411620-81411639 | Msa0527170:intron | 45.0% | |
| ! | CCCATCGTTGGATTCTCTTT+TGG | + | chr3_4:81411624-81411643 | None:intergenic | 45.0% |
| !! | TTCTGGCCTTTTGATACCCA+CGG | - | chr3_4:81411932-81411951 | Msa0527170:intron | 45.0% |
| ACCATACCGTGGGTATCAAA+AGG | + | chr3_4:81411941-81411960 | None:intergenic | 45.0% | |
| CTTGCATGGGTGTATTTACG+CGG | - | chr3_4:81411970-81411989 | Msa0527170:intron | 45.0% | |
| AGGATGGGACCAAGGATTAT+TGG | - | chr3_4:81412096-81412115 | Msa0527170:intron | 45.0% | |
| GGATGGGACCAAGGATTATT+GGG | - | chr3_4:81412097-81412116 | Msa0527170:intron | 45.0% | |
| GAATGTGTCTTGGTGAGAAG+CGG | - | chr3_4:81412119-81412138 | Msa0527170:intron | 45.0% | |
| ! | TCTCCATAGCCAAGTTTTGC+TGG | + | chr3_4:81412157-81412176 | None:intergenic | 45.0% |
| AAAACTTGGCTATGGAGAGC+AGG | - | chr3_4:81412159-81412178 | Msa0527170:intron | 45.0% | |
| AAACTTGGCTATGGAGAGCA+GGG | - | chr3_4:81412160-81412179 | Msa0527170:intron | 45.0% | |
| !! | AATACCTGGAATAGTGGGTG+GGG | + | chr3_4:81412188-81412207 | None:intergenic | 45.0% |
| GTAGACCAATATGGCAGTTG+AGG | + | chr3_4:81412323-81412342 | None:intergenic | 45.0% | |
| !! | TGACATTGACTTGAACCTGC+AGG | - | chr3_4:81412910-81412929 | Msa0527170:intron | 45.0% |
| CGTGACATCAGCCTCTTTCT+TGG | + | chr3_4:81408692-81408711 | None:intergenic | 50.0% | |
| GATGTCACGGAGTTGCAGAT+TGG | - | chr3_4:81408703-81408722 | Msa0527170:CDS | 50.0% | |
| GGAGTTGCAGATTGGCGTTA+AGG | - | chr3_4:81408711-81408730 | Msa0527170:CDS | 50.0% | |
| ATCTCGTGACCTTGCTAGCA+AGG | + | chr3_4:81409382-81409401 | None:intergenic | 50.0% | |
| GCTGCATCATAGGTAGGGAT+TGG | + | chr3_4:81409493-81409512 | None:intergenic | 50.0% | |
| AAATGAAGGGGAAGGGGAAG+GGG | - | chr3_4:81409815-81409834 | Msa0527170:intron | 50.0% | |
| CTAAACGGGTAGTGTCTGTC+AGG | + | chr3_4:81410441-81410460 | None:intergenic | 50.0% | |
| TTGCAGGGAAAACTCACCGA+TGG | - | chr3_4:81410732-81410751 | Msa0527170:intron | 50.0% | |
| ! | GGTGGTGGTCAAGTGATCAA+AGG | - | chr3_4:81410807-81410826 | Msa0527170:intron | 50.0% |
| CGGAAGAGGGTTGTTGATGT+TGG | - | chr3_4:81411016-81411035 | Msa0527170:intron | 50.0% | |
| CTGTTCGTGATCCCTTTGTG+AGG | + | chr3_4:81411536-81411555 | None:intergenic | 50.0% | |
| GGCAGAAAACAAGGAGTGGT+GGG | + | chr3_4:81411603-81411622 | None:intergenic | 50.0% | |
| TGGCAGAAAACAAGGAGTGG+TGG | + | chr3_4:81411604-81411623 | None:intergenic | 50.0% | |
| ! | GCCTTTTGATACCCACGGTA+TGG | - | chr3_4:81411937-81411956 | Msa0527170:intron | 50.0% |
| TTGCTCCTCCTCTTCTTTGC+AGG | - | chr3_4:81412076-81412095 | Msa0527170:intron | 50.0% | |
| TCCTCCTCTTCTTTGCAGGA+TGG | - | chr3_4:81412080-81412099 | Msa0527170:intron | 50.0% | |
| CCTCCTCTTCTTTGCAGGAT+GGG | - | chr3_4:81412081-81412100 | Msa0527170:intron | 50.0% | |
| TTCTTTGCAGGATGGGACCA+AGG | - | chr3_4:81412088-81412107 | Msa0527170:intron | 50.0% | |
| !! | CATTGACTTGAACCTGCAGG+TGG | - | chr3_4:81412913-81412932 | Msa0527170:intron | 50.0% |
| GGAAGGGGAGGGAAGAAGAT+GGG | - | chr3_4:81409830-81409849 | Msa0527170:intron | 55.0% | |
| CGACAAAGGGGTTGACTGCA+TGG | + | chr3_4:81411322-81411341 | None:intergenic | 55.0% | |
| ACGCGAAGTCTTCCCATCGT+TGG | + | chr3_4:81411636-81411655 | None:intergenic | 55.0% | |
| CCCATCCTGCAAAGAAGAGG+AGG | + | chr3_4:81412084-81412103 | None:intergenic | 55.0% | |
| GGTCCCATCCTGCAAAGAAG+AGG | + | chr3_4:81412087-81412106 | None:intergenic | 55.0% | |
| GTCGTTCACTCCCACAAGCT+CGG | + | chr3_4:81412959-81412978 | None:intergenic | 55.0% | |
| GGGAAGGGGAGGGAAGAAGA+TGG | - | chr3_4:81409829-81409848 | Msa0527170:intron | 60.0% | |
| GGTTCCCCACCCACTATTCC+AGG | - | chr3_4:81412181-81412200 | Msa0527170:intron | 60.0% | |
| ATAAGGGTCGCACCACCTGC+AGG | + | chr3_4:81412928-81412947 | None:intergenic | 60.0% | |
| TGAAGGGGAAGGGGAAGGGG+AGG | - | chr3_4:81409818-81409837 | Msa0527170:intron | 65.0% | |
| GAAGGGGAAGGGGAAGGGGA+GGG | - | chr3_4:81409819-81409838 | Msa0527170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 81408390 | 81413280 | 81408390 | ID=Msa0527170;Name=Msa0527170 |
| chr3_4 | mRNA | 81408390 | 81413280 | 81408390 | ID=Msa0527170-mRNA-1;Parent=Msa0527170;Name=Msa0527170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=53|1|1|1|1|1|6|263|148 |
| chr3_4 | exon | 81408390 | 81408738 | 81408390 | ID=Msa0527170-mRNA-1:exon:24575;Parent=Msa0527170-mRNA-1 |
| chr3_4 | exon | 81409468 | 81409572 | 81409468 | ID=Msa0527170-mRNA-1:exon:24574;Parent=Msa0527170-mRNA-1 |
| chr3_4 | exon | 81410842 | 81410932 | 81410842 | ID=Msa0527170-mRNA-1:exon:24573;Parent=Msa0527170-mRNA-1 |
| chr3_4 | exon | 81411994 | 81412056 | 81411994 | ID=Msa0527170-mRNA-1:exon:24572;Parent=Msa0527170-mRNA-1 |
| chr3_4 | exon | 81412938 | 81412987 | 81412938 | ID=Msa0527170-mRNA-1:exon:24571;Parent=Msa0527170-mRNA-1 |
| chr3_4 | exon | 81413176 | 81413280 | 81413176 | ID=Msa0527170-mRNA-1:exon:24570;Parent=Msa0527170-mRNA-1 |
| chr3_4 | five_prime_UTR | 81413228 | 81413280 | 81413228 | ID=Msa0527170-mRNA-1:five_prime_utr;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81413176 | 81413227 | 81413176 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81412938 | 81412987 | 81412938 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81411994 | 81412056 | 81411994 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81410842 | 81410932 | 81410842 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81409468 | 81409572 | 81409468 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | CDS | 81408653 | 81408738 | 81408653 | ID=Msa0527170-mRNA-1:cds;Parent=Msa0527170-mRNA-1 |
| chr3_4 | three_prime_UTR | 81408390 | 81408652 | 81408390 | ID=Msa0527170-mRNA-1:three_prime_utr;Parent=Msa0527170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
