Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529850 | AFK49131.1 | 91.954 | 174 | 2 | 2 | 137 | 298 | 163 | 336 | 2.19e-106 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529850 | sp|A0A059TC02|CCR1_PETHY | 67.033 | 182 | 46 | 3 | 127 | 296 | 147 | 326 | 3.81e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529850 | I3T9D9 | 91.954 | 174 | 2 | 2 | 137 | 298 | 163 | 336 | 1.05e-106 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0281470 | Msa0529850 | 0.804952 | 1.687193e-49 | -8.615850e-47 |
| Msa0529850 | Msa0585330 | 0.851843 | 6.814523e-61 | -8.615850e-47 |
| Msa0529850 | Msa0585840 | 0.859189 | 4.911066e-63 | -8.615850e-47 |
| Msa0529850 | Msa0625780 | 0.854494 | 1.185684e-61 | -8.615850e-47 |
| Msa0529850 | Msa0663480 | 0.854614 | 1.094336e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529850 | MtrunA17_Chr4g0001321 | 91.954 | 174 | 2 | 2 | 137 | 298 | 163 | 336 | 2.15e-110 | 323 |
| Msa0529850 | MtrunA17_Chr2g0333781 | 64.789 | 213 | 54 | 5 | 103 | 297 | 128 | 337 | 1.57e-79 | 244 |
| Msa0529850 | MtrunA17_Chr8g0337031 | 72.174 | 115 | 4 | 1 | 1 | 87 | 275 | 389 | 3.95e-43 | 156 |
| Msa0529850 | MtrunA17_Chr3g0077231 | 46.250 | 160 | 72 | 4 | 138 | 285 | 160 | 317 | 1.06e-38 | 138 |
| Msa0529850 | MtrunA17_Chr3g0077221 | 46.667 | 165 | 74 | 4 | 133 | 285 | 159 | 321 | 3.04e-38 | 137 |
| Msa0529850 | MtrunA17_Chr5g0431311 | 42.683 | 164 | 83 | 4 | 134 | 286 | 154 | 317 | 2.07e-36 | 132 |
| Msa0529850 | MtrunA17_Chr8g0363831 | 41.420 | 169 | 86 | 3 | 127 | 285 | 154 | 319 | 9.74e-32 | 120 |
| Msa0529850 | MtrunA17_Chr4g0039311 | 40.964 | 166 | 84 | 4 | 132 | 285 | 159 | 322 | 4.14e-31 | 118 |
| Msa0529850 | MtrunA17_Chr8g0364051 | 39.080 | 174 | 89 | 5 | 127 | 288 | 153 | 321 | 9.00e-30 | 115 |
| Msa0529850 | MtrunA17_Chr4g0039321 | 36.757 | 185 | 97 | 5 | 113 | 285 | 144 | 320 | 2.03e-28 | 111 |
| Msa0529850 | MtrunA17_Chr5g0423551 | 34.857 | 175 | 98 | 5 | 127 | 288 | 148 | 319 | 9.69e-27 | 106 |
| Msa0529850 | MtrunA17_Chr3g0106111 | 35.625 | 160 | 92 | 3 | 138 | 286 | 158 | 317 | 2.04e-26 | 105 |
| Msa0529850 | MtrunA17_Chr4g0002661 | 36.646 | 161 | 94 | 4 | 136 | 288 | 163 | 323 | 4.55e-24 | 99.8 |
| Msa0529850 | MtrunA17_Chr2g0291541 | 36.364 | 165 | 89 | 4 | 138 | 288 | 164 | 326 | 5.20e-23 | 97.1 |
| Msa0529850 | MtrunA17_Chr2g0331211 | 32.597 | 181 | 102 | 6 | 128 | 294 | 151 | 325 | 1.43e-22 | 95.5 |
| Msa0529850 | MtrunA17_Chr4g0002961 | 37.500 | 160 | 92 | 4 | 137 | 288 | 164 | 323 | 3.78e-22 | 94.4 |
| Msa0529850 | MtrunA17_Chr7g0247001 | 47.934 | 121 | 31 | 3 | 1 | 93 | 254 | 370 | 8.14e-22 | 95.5 |
| Msa0529850 | MtrunA17_Chr1g0155411 | 32.386 | 176 | 105 | 5 | 128 | 289 | 151 | 326 | 1.26e-20 | 90.5 |
| Msa0529850 | MtrunA17_Chr1g0155431 | 32.967 | 182 | 96 | 7 | 128 | 289 | 151 | 326 | 5.20e-20 | 88.6 |
| Msa0529850 | MtrunA17_Chr8g0349861 | 44.628 | 121 | 35 | 3 | 1 | 93 | 257 | 373 | 2.31e-18 | 85.1 |
| Msa0529850 | MtrunA17_Chr4g0042101 | 26.047 | 215 | 129 | 6 | 103 | 289 | 142 | 354 | 1.27e-14 | 73.6 |
| Msa0529850 | MtrunA17_Chr4g0048961 | 29.714 | 175 | 101 | 5 | 133 | 286 | 163 | 336 | 5.69e-14 | 71.2 |
| Msa0529850 | MtrunA17_Chr6g0450211 | 35.036 | 137 | 73 | 4 | 138 | 261 | 211 | 344 | 1.82e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529850 | AT1G15950.7 | 70.732 | 164 | 36 | 2 | 137 | 288 | 61 | 224 | 1.04e-67 | 211 |
| Msa0529850 | AT1G80820.1 | 70.659 | 167 | 37 | 2 | 137 | 291 | 154 | 320 | 1.21e-67 | 214 |
| Msa0529850 | AT1G15950.3 | 70.732 | 164 | 36 | 2 | 137 | 288 | 159 | 322 | 3.80e-66 | 211 |
| Msa0529850 | AT1G15950.1 | 70.732 | 164 | 36 | 2 | 137 | 288 | 159 | 322 | 3.80e-66 | 211 |
| Msa0529850 | AT1G15950.2 | 69.231 | 156 | 36 | 2 | 137 | 280 | 159 | 314 | 4.38e-59 | 192 |
| Msa0529850 | AT1G15950.6 | 74.074 | 108 | 26 | 1 | 137 | 242 | 159 | 266 | 3.77e-39 | 139 |
| Msa0529850 | AT1G15950.5 | 74.074 | 108 | 26 | 1 | 137 | 242 | 159 | 266 | 4.98e-39 | 139 |
| Msa0529850 | AT1G15950.4 | 74.074 | 108 | 26 | 1 | 137 | 242 | 159 | 266 | 8.36e-39 | 138 |
| Msa0529850 | AT1G80820.2 | 74.074 | 108 | 26 | 1 | 137 | 242 | 154 | 261 | 9.01e-38 | 135 |
| Msa0529850 | AT2G13560.1 | 65.217 | 115 | 12 | 1 | 1 | 87 | 270 | 384 | 1.37e-37 | 141 |
| Msa0529850 | AT5G19440.1 | 43.605 | 172 | 81 | 5 | 127 | 286 | 155 | 322 | 1.55e-37 | 136 |
| Msa0529850 | AT1G51410.1 | 41.954 | 174 | 85 | 5 | 127 | 288 | 154 | 323 | 9.29e-34 | 126 |
| Msa0529850 | AT5G58490.1 | 40.741 | 162 | 85 | 4 | 138 | 288 | 162 | 323 | 1.14e-30 | 117 |
| Msa0529850 | AT1G66800.1 | 41.104 | 163 | 76 | 4 | 138 | 285 | 158 | 315 | 1.24e-29 | 115 |
| Msa0529850 | AT1G09480.2 | 39.429 | 175 | 88 | 6 | 127 | 288 | 153 | 322 | 1.80e-29 | 114 |
| Msa0529850 | AT1G09480.1 | 39.429 | 175 | 88 | 6 | 127 | 288 | 200 | 369 | 4.70e-29 | 114 |
| Msa0529850 | AT1G09490.2 | 39.205 | 176 | 87 | 5 | 127 | 288 | 122 | 291 | 4.97e-29 | 112 |
| Msa0529850 | AT1G09490.1 | 39.080 | 174 | 90 | 4 | 127 | 288 | 153 | 322 | 7.73e-29 | 112 |
| Msa0529850 | AT1G68540.2 | 36.000 | 175 | 96 | 5 | 127 | 288 | 43 | 214 | 6.00e-27 | 105 |
| Msa0529850 | AT1G68540.1 | 36.000 | 175 | 96 | 5 | 127 | 288 | 150 | 321 | 2.69e-26 | 105 |
| Msa0529850 | AT1G09510.1 | 37.647 | 170 | 92 | 5 | 127 | 285 | 153 | 319 | 6.64e-26 | 105 |
| Msa0529850 | AT2G02400.1 | 33.918 | 171 | 100 | 3 | 129 | 288 | 150 | 318 | 9.73e-25 | 101 |
| Msa0529850 | AT1G09500.2 | 37.952 | 166 | 87 | 5 | 134 | 285 | 125 | 288 | 9.92e-25 | 101 |
| Msa0529850 | AT1G09500.1 | 37.952 | 166 | 87 | 5 | 134 | 285 | 159 | 322 | 1.23e-24 | 101 |
| Msa0529850 | AT1G76470.1 | 35.152 | 165 | 91 | 4 | 138 | 289 | 162 | 323 | 3.18e-23 | 97.8 |
| Msa0529850 | AT4G35420.1 | 34.302 | 172 | 99 | 5 | 128 | 288 | 153 | 321 | 5.55e-23 | 97.1 |
| Msa0529850 | AT1G25460.1 | 32.317 | 164 | 97 | 4 | 138 | 288 | 157 | 319 | 7.59e-22 | 94.0 |
| Msa0529850 | AT1G09500.3 | 47.368 | 95 | 45 | 2 | 134 | 225 | 159 | 251 | 5.44e-20 | 88.2 |
| Msa0529850 | AT4G00570.1 | 42.063 | 126 | 42 | 2 | 1 | 98 | 263 | 385 | 3.31e-18 | 85.1 |
| Msa0529850 | AT2G33590.1 | 37.714 | 175 | 93 | 5 | 125 | 284 | 143 | 316 | 1.98e-17 | 81.6 |
| Msa0529850 | AT2G33600.1 | 38.509 | 161 | 84 | 4 | 136 | 284 | 159 | 316 | 1.19e-16 | 79.3 |
| Msa0529850 | AT5G42800.1 | 30.769 | 169 | 96 | 6 | 139 | 290 | 163 | 327 | 1.78e-16 | 79.3 |
| Msa0529850 | AT4G27250.2 | 30.612 | 147 | 91 | 3 | 133 | 268 | 169 | 315 | 1.72e-12 | 67.4 |
| Msa0529850 | AT4G27250.1 | 30.573 | 157 | 88 | 5 | 133 | 268 | 169 | 325 | 3.87e-12 | 66.6 |
| Msa0529850 | AT1G61720.1 | 30.464 | 151 | 86 | 4 | 137 | 268 | 166 | 316 | 1.24e-11 | 64.7 |
| Msa0529850 | AT2G23910.4 | 36.458 | 96 | 46 | 3 | 138 | 226 | 126 | 213 | 4.29e-11 | 62.8 |
| Msa0529850 | AT2G23910.1 | 36.458 | 96 | 46 | 3 | 138 | 226 | 160 | 247 | 7.05e-11 | 62.4 |
| Msa0529850 | AT2G23910.2 | 36.458 | 96 | 46 | 3 | 138 | 226 | 160 | 247 | 7.19e-11 | 62.0 |
| Msa0529850 | AT2G23910.3 | 36.458 | 96 | 46 | 3 | 138 | 226 | 160 | 247 | 8.25e-11 | 62.0 |
| Msa0529850 | AT5G14700.1 | 36.364 | 110 | 61 | 4 | 138 | 242 | 215 | 320 | 8.91e-11 | 62.4 |
Find 67 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTATAGATGAGTTTA+TGG | 0.175785 | 4_1:-3634642 | Msa0529850:exon |
| GTTGCAATTGCTGGACTTCT+AGG | 0.233797 | 4_1:-3634012 | Msa0529850:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4_1:-3632162 | Msa0529850:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4_1:-3632222 | Msa0529850:CDS |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4_1:-3632007 | Msa0529850:CDS |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4_1:-3632250 | Msa0529850:CDS |
| ACAGCTGGTGTTGCAATTGC+TGG | 0.329137 | 4_1:-3634021 | Msa0529850:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4_1:+3630783 | None:intergenic |
| CTATAATATAGTACTCTTGT+AGG | 0.339137 | 4_1:-3630616 | Msa0529850:three_prime_UTR |
| AGAGTGCAAAGGGTCAATTT+TGG | 0.340968 | 4_1:-3633448 | Msa0529850:CDS |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4_1:-3632063 | Msa0529850:CDS |
| ACAACAACTGTCTTCTGCTT+GGG | 0.344129 | 4_1:+3633952 | None:intergenic |
| TTACATGTGTAGCATGGATT+TGG | 0.352298 | 4_1:+3633223 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4_1:-3630710 | Msa0529850:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4_1:+3632134 | None:intergenic |
| GAATAATGTCTAAGCTAAAT+AGG | 0.357719 | 4_1:+3633013 | None:intergenic |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4_1:-3632309 | Msa0529850:intron |
| AATACCTGTACAATCACATT+TGG | 0.382169 | 4_1:+3634599 | None:intergenic |
| AGAACAATGTCTGGGTTACT+TGG | 0.383525 | 4_1:-3633287 | Msa0529850:CDS |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4_1:+3630663 | None:intergenic |
| TTGCAGCAGCATCGCCTTGA+TGG | 0.403336 | 4_1:-3634677 | Msa0529850:five_prime_UTR |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4_1:-3632308 | Msa0529850:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4_1:+3632198 | None:intergenic |
| TTCTCTACCCAGGGGACAGC+TGG | 0.430435 | 4_1:-3634036 | Msa0529850:intron |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4_1:+3630720 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4_1:+3632216 | None:intergenic |
| AAGCAGAAGACAGTTGTTGT+TGG | 0.439558 | 4_1:-3633949 | Msa0529850:CDS |
| TGAGCTAATTGACAAAGCTT+CGG | 0.439718 | 4_1:+3632991 | None:intergenic |
| TCACTTACTAGAACAATGTC+TGG | 0.441840 | 4_1:-3633296 | Msa0529850:intron |
| TATAATATAGTACTCTTGTA+GGG | 0.442040 | 4_1:-3630615 | Msa0529850:three_prime_UTR |
| TGCTTGGGGAAGTCAATCAT+TGG | 0.442318 | 4_1:+3633967 | None:intergenic |
| GATTGAGAAAACAGAATGTA+AGG | 0.458263 | 4_1:-3633259 | Msa0529850:CDS |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4_1:+3632186 | None:intergenic |
| AACAACAACTGTCTTCTGCT+TGG | 0.467867 | 4_1:+3633951 | None:intergenic |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4_1:-3630757 | Msa0529850:CDS |
| GAACAATGTCTGGGTTACTT+GGG | 0.475067 | 4_1:-3633286 | Msa0529850:CDS |
| CATGTGTAGCATGGATTTGG+AGG | 0.478516 | 4_1:+3633226 | None:intergenic |
| TACTACTACAGTGCTGGAAT+CGG | 0.490041 | 4_1:-3633533 | Msa0529850:intron |
| TGGAAGCTGTCTTTACTCGC+TGG | 0.495700 | 4_1:-3634622 | Msa0529850:CDS |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4_1:-3630751 | Msa0529850:CDS |
| CTAGGTGCTGTAAGAGCTCA+AGG | 0.520317 | 4_1:-3633994 | Msa0529850:CDS |
| CTGGCCAAATGTGATTGTAC+AGG | 0.520962 | 4_1:-3634603 | Msa0529850:intron |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4_1:+3630653 | None:intergenic |
| AAAACAATGGCAAGGATGCT+GGG | 0.541419 | 4_1:-3633491 | Msa0529850:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4_1:-3630756 | Msa0529850:CDS |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4_1:+3630654 | None:intergenic |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4_1:-3630693 | Msa0529850:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4_1:-3632229 | Msa0529850:CDS |
| CAAGATAGTCATCTCCATCA+AGG | 0.571958 | 4_1:+3634663 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4_1:+3630657 | None:intergenic |
| CGAGTTTGTTCATCAACTCA+AGG | 0.576914 | 4_1:+3635147 | None:intergenic |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4_1:+3632157 | None:intergenic |
| GAAAACTTACATGTGTAGCA+TGG | 0.581162 | 4_1:+3633217 | None:intergenic |
| CAACAACTGTCTTCTGCTTG+GGG | 0.584723 | 4_1:+3633953 | None:intergenic |
| CACTTACTAGAACAATGTCT+GGG | 0.585150 | 4_1:-3633295 | Msa0529850:intron |
| GTGTAGCATGGATTTGGAGG+CGG | 0.586253 | 4_1:+3633229 | None:intergenic |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4_1:-3632022 | Msa0529850:CDS |
| ATAATATAGTACTCTTGTAG+GGG | 0.610642 | 4_1:-3630614 | Msa0529850:three_prime_UTR |
| AACAATGTCTGGGTTACTTG+GGG | 0.612834 | 4_1:-3633285 | Msa0529850:CDS |
| GTGCTGTAAGAGCTCAAGGA+AGG | 0.620608 | 4_1:-3633990 | Msa0529850:CDS |
| CAGTTGTTGTTGGTGCTGCA+AGG | 0.622834 | 4_1:-3633939 | Msa0529850:intron |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4_1:-3632281 | Msa0529850:CDS |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4_1:-3632280 | Msa0529850:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4_1:+3630667 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4_1:+3632217 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4_1:-3632027 | Msa0529850:CDS |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4_1:-3632298 | Msa0529850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTATTTTTAGGTAA+TGG | - | chr4_1:3632784-3632803 | Msa0529850:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | - | chr4_1:3633736-3633755 | Msa0529850:intron | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | - | chr4_1:3634331-3634350 | Msa0529850:intron | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | - | chr4_1:3634395-3634414 | Msa0529850:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | - | chr4_1:3634396-3634415 | Msa0529850:intron | 10.0% |
| !! | AATTATTTATGATATATTCT+TGG | + | chr4_1:3634489-3634508 | None:intergenic | 10.0% |
| !! | TTGTTAATTATTAATTGAAC+TGG | - | chr4_1:3631337-3631356 | Msa0529850:intron | 15.0% |
| !! | TGTTAATTATTAATTGAACT+GGG | - | chr4_1:3631338-3631357 | Msa0529850:intron | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | + | chr4_1:3634162-3634181 | None:intergenic | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | + | chr4_1:3634328-3634347 | None:intergenic | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | - | chr4_1:3634330-3634349 | Msa0529850:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | + | chr4_1:3634370-3634389 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | - | chr4_1:3634492-3634511 | Msa0529850:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | + | chr4_1:3634565-3634584 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | - | chr4_1:3634766-3634785 | Msa0529850:intron | 15.0% |
| !! | ACAAAATTTGTAAGATTGAA+AGG | + | chr4_1:3630544-3630563 | None:intergenic | 20.0% |
| !! | ATAATTAACAATATTTCCTG+AGG | + | chr4_1:3631328-3631347 | None:intergenic | 20.0% |
| !! | GTTAATTATTAATTGAACTG+GGG | - | chr4_1:3631339-3631358 | Msa0529850:intron | 20.0% |
| !!! | TTTTTTTATAGATCTTGTCA+TGG | - | chr4_1:3631573-3631592 | Msa0529850:intron | 20.0% |
| !!! | TAGTTATCTTTTATTGTGAA+AGG | - | chr4_1:3631747-3631766 | Msa0529850:intron | 20.0% |
| !!! | ATTTTAATGAAAGCTTTGAA+TGG | - | chr4_1:3632007-3632026 | Msa0529850:CDS | 20.0% |
| !! | CTTGATATACATATTAAACA+TGG | - | chr4_1:3632259-3632278 | Msa0529850:CDS | 20.0% |
| !! | TATACATATTAAACATGGTA+TGG | - | chr4_1:3632264-3632283 | Msa0529850:CDS | 20.0% |
| !! | GTTTATTGTTCTATACATAA+AGG | - | chr4_1:3632495-3632514 | Msa0529850:intron | 20.0% |
| !!! | TGTTTTCAATAATTATTCCA+AGG | + | chr4_1:3632569-3632588 | None:intergenic | 20.0% |
| !!! | CTGCAAAATTTAAAATATGT+GGG | + | chr4_1:3632611-3632630 | None:intergenic | 20.0% |
| !! | AAAAAAATTGAAGTTAGAGA+CGG | - | chr4_1:3632963-3632982 | Msa0529850:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | - | chr4_1:3633408-3633427 | Msa0529850:intron | 20.0% |
| !! | CTTATGAATTATCTAGATTA+GGG | - | chr4_1:3633776-3633795 | Msa0529850:intron | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | + | chr4_1:3633931-3633950 | None:intergenic | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | - | chr4_1:3633947-3633966 | Msa0529850:CDS | 20.0% |
| !!! | TTGAGTTTTTTTGTTTGTTA+GGG | + | chr4_1:3634069-3634088 | None:intergenic | 20.0% |
| !!! | TTTGAGTTTTTTTGTTTGTT+AGG | + | chr4_1:3634070-3634089 | None:intergenic | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | + | chr4_1:3634156-3634175 | None:intergenic | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | + | chr4_1:3634366-3634385 | None:intergenic | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | - | chr4_1:3634451-3634470 | Msa0529850:intron | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | - | chr4_1:3634452-3634471 | Msa0529850:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | - | chr4_1:3634765-3634784 | Msa0529850:intron | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | + | chr4_1:3634890-3634909 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | - | chr4_1:3634948-3634967 | Msa0529850:intron | 20.0% |
| !! | TATAATATAGTACTCTTGTA+GGG | - | chr4_1:3635043-3635062 | Msa0529850:intron | 20.0% |
| !! | TATTCTTTGTTGTCAGATTT+AGG | - | chr4_1:3630957-3630976 | Msa0529850:intron | 25.0% |
| !! | GCATTTTCCTTTTATTCATA+TGG | - | chr4_1:3631116-3631135 | Msa0529850:intron | 25.0% |
| ! | ATATGGACCATATGAATAAA+AGG | + | chr4_1:3631126-3631145 | None:intergenic | 25.0% |
| ! | AGTCGAATAACAGAAAAATA+TGG | + | chr4_1:3631143-3631162 | None:intergenic | 25.0% |
| !!! | GTGCTTTTAAGTTATTACAA+CGG | - | chr4_1:3631208-3631227 | Msa0529850:intron | 25.0% |
| !! | CCTGCAAAATTTAAAATATG+TGG | + | chr4_1:3632612-3632631 | None:intergenic | 25.0% |
| !!! | CCACATATTTTAAATTTTGC+AGG | - | chr4_1:3632609-3632628 | Msa0529850:intron | 25.0% |
| ! | GAATAATGTCTAAGCTAAAT+AGG | + | chr4_1:3632648-3632667 | None:intergenic | 25.0% |
| !! | GAGAATGATAATGTAAATGA+AGG | - | chr4_1:3632710-3632729 | Msa0529850:intron | 25.0% |
| !! | AATGATAATGTAAATGAAGG+AGG | - | chr4_1:3632713-3632732 | Msa0529850:intron | 25.0% |
| !! | ATGATAATGTAAATGAAGGA+GGG | - | chr4_1:3632714-3632733 | Msa0529850:intron | 25.0% |
| ! | GTAACAACAATTTAGAGATT+TGG | - | chr4_1:3632741-3632760 | Msa0529850:intron | 25.0% |
| !!! | TGTATTTTTAAGAGCACTTT+TGG | - | chr4_1:3632922-3632941 | Msa0529850:intron | 25.0% |
| !! | TTTTATGTAGAGACAGAATT+TGG | - | chr4_1:3633020-3633039 | Msa0529850:CDS | 25.0% |
| ! | AGAAAAATCCAAATTAGAGA+CGG | + | chr4_1:3633234-3633253 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | - | chr4_1:3633338-3633357 | Msa0529850:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | + | chr4_1:3633463-3633482 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | + | chr4_1:3633475-3633494 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | - | chr4_1:3633546-3633565 | Msa0529850:intron | 25.0% |
| ! | GCTTATGAATTATCTAGATT+AGG | - | chr4_1:3633775-3633794 | Msa0529850:intron | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | + | chr4_1:3633930-3633949 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | + | chr4_1:3633932-3633951 | None:intergenic | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | + | chr4_1:3633973-3633992 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | + | chr4_1:3633974-3633993 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | + | chr4_1:3634129-3634148 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | - | chr4_1:3634202-3634221 | Msa0529850:intron | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | + | chr4_1:3634481-3634500 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | + | chr4_1:3634520-3634539 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | + | chr4_1:3634680-3634699 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | - | chr4_1:3634681-3634700 | Msa0529850:five_prime_UTR | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | - | chr4_1:3634682-3634701 | Msa0529850:five_prime_UTR | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | + | chr4_1:3634809-3634828 | None:intergenic | 25.0% |
| ! | CTATAATATAGTACTCTTGT+AGG | - | chr4_1:3635042-3635061 | Msa0529850:intron | 25.0% |
| ! | ATAATATAGTACTCTTGTAG+GGG | - | chr4_1:3635044-3635063 | Msa0529850:intron | 25.0% |
| TAATCATGGGTATAACAATC+AGG | + | chr4_1:3630573-3630592 | None:intergenic | 30.0% | |
| GAATTGAATCTTGATCATCT+AGG | - | chr4_1:3630743-3630762 | Msa0529850:CDS | 30.0% | |
| AGAGATATTAAACCACACAT+AGG | + | chr4_1:3630812-3630831 | None:intergenic | 30.0% | |
| AATGTAACTGAAGCAACAAT+AGG | + | chr4_1:3630878-3630897 | None:intergenic | 30.0% | |
| TGCTTCAGTTACATTTATTC+TGG | - | chr4_1:3630883-3630902 | Msa0529850:intron | 30.0% | |
| ! | TATGAGTTGAATTCACTCTA+CGG | - | chr4_1:3630921-3630940 | Msa0529850:intron | 30.0% |
| TGCTGTTATAGATGAGTTTA+TGG | - | chr4_1:3631016-3631035 | Msa0529850:intron | 30.0% | |
| AATACCTGTACAATCACATT+TGG | + | chr4_1:3631062-3631081 | None:intergenic | 30.0% | |
| ATCATCATTAAACATTCGGT+AGG | + | chr4_1:3631244-3631263 | None:intergenic | 30.0% | |
| GCACATCATCATTAAACATT+CGG | + | chr4_1:3631248-3631267 | None:intergenic | 30.0% | |
| ! | AATGTTTAATGATGATGTGC+AGG | - | chr4_1:3631248-3631267 | Msa0529850:intron | 30.0% |
| !! | ATTTTACATGTTGCTGTTAC+AGG | - | chr4_1:3631302-3631321 | Msa0529850:intron | 30.0% |
| TCTTGAAAATATTGTGTCGT+TGG | - | chr4_1:3631848-3631867 | Msa0529850:intron | 30.0% | |
| ! | TTCCATCGTTAAGTTTGTTT+GGG | - | chr4_1:3631910-3631929 | Msa0529850:intron | 30.0% |
| !! | AATGAAAGCTTTGAATGGAA+TGG | - | chr4_1:3632012-3632031 | Msa0529850:CDS | 30.0% |
| TCACTAAGGATATTCACATT+TGG | - | chr4_1:3632077-3632096 | Msa0529850:CDS | 30.0% | |
| TAATGCAGCAAGAAAAACAA+TGG | - | chr4_1:3632154-3632173 | Msa0529850:CDS | 30.0% | |
| GATTGAGAAAACAGAATGTA+AGG | - | chr4_1:3632399-3632418 | Msa0529850:intron | 30.0% | |
| ! | TTTTAAATTTTGCAGGCTGA+TGG | - | chr4_1:3632616-3632635 | Msa0529850:intron | 30.0% |
| ! | TGATAATGTAAATGAAGGAG+GGG | - | chr4_1:3632715-3632734 | Msa0529850:intron | 30.0% |
| AAATTATGTCTCTGTAGAGA+CGG | - | chr4_1:3632991-3633010 | Msa0529850:CDS | 30.0% | |
| ! | ATTTGGTTTCTTTGTAGTCA+CGG | - | chr4_1:3633037-3633056 | Msa0529850:intron | 30.0% |
| GAAAAATCCAAATTAGAGAC+GGG | + | chr4_1:3633233-3633252 | None:intergenic | 30.0% | |
| ! | TGTTGCATTCACATAAGTTT+TGG | + | chr4_1:3633527-3633546 | None:intergenic | 30.0% |
| TTATGTTCATGTTAAGGATG+TGG | - | chr4_1:3633552-3633571 | Msa0529850:intron | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | + | chr4_1:3633703-3633722 | None:intergenic | 30.0% | |
| GACTATATGAAACACTTACT+TGG | + | chr4_1:3633707-3633726 | None:intergenic | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | + | chr4_1:3633821-3633840 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | - | chr4_1:3633983-3634002 | Msa0529850:CDS | 30.0% | |
| !! | TGACTTGTTCATTCTAAACA+GGG | + | chr4_1:3634029-3634048 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | + | chr4_1:3634030-3634049 | None:intergenic | 30.0% |
| ! | ATTTTACAGGTAAAAACGAG+TGG | - | chr4_1:3634215-3634234 | Msa0529850:intron | 30.0% |
| ATGACTTCTCCTAAAAATAG+TGG | + | chr4_1:3634270-3634289 | None:intergenic | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | - | chr4_1:3634743-3634762 | Msa0529850:intron | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | + | chr4_1:3634878-3634897 | None:intergenic | 30.0% | |
| AAATCAAAAGCTGAAAGACT+TGG | - | chr4_1:3634901-3634920 | Msa0529850:intron | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | - | chr4_1:3634902-3634921 | Msa0529850:intron | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | + | chr4_1:3634941-3634960 | None:intergenic | 30.0% | |
| !! | AGAATTTTAGCACAAGCTCA+AGG | + | chr4_1:3630699-3630718 | None:intergenic | 35.0% |
| TCACAAATGCTTAAGCTATC+TGG | - | chr4_1:3630780-3630799 | Msa0529850:CDS | 35.0% | |
| TTCACTCTACGGAACATAAT+TGG | - | chr4_1:3630932-3630951 | Msa0529850:intron | 35.0% | |
| AACCATTGATCAATGACTGT+TGG | + | chr4_1:3631472-3631491 | None:intergenic | 35.0% | |
| ATGAGGTAGAGATGATAACT+TGG | + | chr4_1:3631525-3631544 | None:intergenic | 35.0% | |
| TATGTGAAATTCTCTACCCA+GGG | - | chr4_1:3631613-3631632 | Msa0529850:intron | 35.0% | |
| ! | GTTCCATCGTTAAGTTTGTT+TGG | - | chr4_1:3631909-3631928 | Msa0529850:intron | 35.0% |
| ! | TCCATCGTTAAGTTTGTTTG+GGG | - | chr4_1:3631911-3631930 | Msa0529850:intron | 35.0% |
| TGTTGAGTTCATAGTCACTA+AGG | - | chr4_1:3632063-3632082 | Msa0529850:CDS | 35.0% | |
| !!! | ATTTTGGGTTGTTGATGCAA+AGG | - | chr4_1:3632226-3632245 | Msa0529850:CDS | 35.0% |
| TCACTTACTAGAACAATGTC+TGG | - | chr4_1:3632362-3632381 | Msa0529850:intron | 35.0% | |
| CACTTACTAGAACAATGTCT+GGG | - | chr4_1:3632363-3632382 | Msa0529850:intron | 35.0% | |
| TTACATGTGTAGCATGGATT+TGG | + | chr4_1:3632438-3632457 | None:intergenic | 35.0% | |
| GAAAACTTACATGTGTAGCA+TGG | + | chr4_1:3632444-3632463 | None:intergenic | 35.0% | |
| !! | TTGACATTGCTTTGTTTCCT+TGG | - | chr4_1:3632549-3632568 | Msa0529850:intron | 35.0% |
| TGAGCTAATTGACAAAGCTT+CGG | + | chr4_1:3632670-3632689 | None:intergenic | 35.0% | |
| CGGAATATATGATTCAGAGA+CGG | - | chr4_1:3633057-3633076 | Msa0529850:intron | 35.0% | |
| TTACTCGTCTCTAAGCTAAT+TGG | + | chr4_1:3633126-3633145 | None:intergenic | 35.0% | |
| AGAGACGAGTAAATTAACCA+CGG | - | chr4_1:3633134-3633153 | Msa0529850:intron | 35.0% | |
| ! | AAACAAGTTGGAGATGGAAT+TGG | + | chr4_1:3633174-3633193 | None:intergenic | 35.0% |
| ! | ATCTCCAACTTGTTTAGAGA+CGG | - | chr4_1:3633179-3633198 | Msa0529850:intron | 35.0% |
| AAATCCGTCTCTAAACAAGT+TGG | + | chr4_1:3633186-3633205 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | - | chr4_1:3633350-3633369 | Msa0529850:intron | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | - | chr4_1:3633595-3633614 | Msa0529850:intron | 35.0% | |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | - | chr4_1:3633651-3633670 | Msa0529850:intron | 35.0% |
| !! | GAACTCGAGATTTTGTTTAC+AGG | - | chr4_1:3633854-3633873 | Msa0529850:intron | 35.0% |
| GTGTACATCTAACTTGATCT+TGG | - | chr4_1:3633982-3634001 | Msa0529850:CDS | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | - | chr4_1:3633984-3634003 | Msa0529850:CDS | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | - | chr4_1:3634087-3634106 | Msa0529850:intron | 35.0% | |
| !! | CATTACCAGCCACTATTTTT+AGG | - | chr4_1:3634258-3634277 | Msa0529850:intron | 35.0% |
| ! | ACACACGATATTTGTTAACG+CGG | - | chr4_1:3634608-3634627 | Msa0529850:CDS | 35.0% |
| TAATCTATAGTCGCAGAGAT+AGG | + | chr4_1:3634648-3634667 | None:intergenic | 35.0% | |
| ! | CGAGTTTGTTCATCAACTCA+AGG | + | chr4_1:3630514-3630533 | None:intergenic | 40.0% |
| CAAGATAGTCATCTCCATCA+AGG | + | chr4_1:3630998-3631017 | None:intergenic | 40.0% | |
| ACTGTTGGCGAAATGATCAA+TGG | + | chr4_1:3631457-3631476 | None:intergenic | 40.0% | |
| CAATGAATTCAGTTCGCATG+AGG | + | chr4_1:3631542-3631561 | None:intergenic | 40.0% | |
| GTATGTGAAATTCTCTACCC+AGG | - | chr4_1:3631612-3631631 | Msa0529850:intron | 40.0% | |
| ATGTGAAATTCTCTACCCAG+GGG | - | chr4_1:3631614-3631633 | Msa0529850:intron | 40.0% | |
| ACAACAACTGTCTTCTGCTT+GGG | + | chr4_1:3631709-3631728 | None:intergenic | 40.0% | |
| AACAACAACTGTCTTCTGCT+TGG | + | chr4_1:3631710-3631729 | None:intergenic | 40.0% | |
| AAGCAGAAGACAGTTGTTGT+TGG | - | chr4_1:3631709-3631728 | Msa0529850:intron | 40.0% | |
| TTAAGCATTAGATCCAGCCT+GGG | - | chr4_1:3631887-3631906 | Msa0529850:intron | 40.0% | |
| TCCCCAAACAAACTTAACGA+TGG | + | chr4_1:3631915-3631934 | None:intergenic | 40.0% | |
| ! | ATCGTTAAGTTTGTTTGGGG+AGG | - | chr4_1:3631914-3631933 | Msa0529850:intron | 40.0% |
| ACTAGGATGAATGATCTCCT+AGG | - | chr4_1:3631941-3631960 | Msa0529850:intron | 40.0% | |
| AAACTTTGACCAGCATTCCT+AGG | + | chr4_1:3631961-3631980 | None:intergenic | 40.0% | |
| ! | GCTTTGAATGGAATGGTTGT+TGG | - | chr4_1:3632019-3632038 | Msa0529850:CDS | 40.0% |
| TGTTTGTACTACTACAGTGC+TGG | - | chr4_1:3632119-3632138 | Msa0529850:CDS | 40.0% | |
| ! | TACTACTACAGTGCTGGAAT+CGG | - | chr4_1:3632125-3632144 | Msa0529850:CDS | 40.0% |
| CAGCAAGAAAAACAATGGCA+AGG | - | chr4_1:3632159-3632178 | Msa0529850:CDS | 40.0% | |
| AAAAACAATGGCAAGGATGC+TGG | - | chr4_1:3632166-3632185 | Msa0529850:CDS | 40.0% | |
| AAAACAATGGCAAGGATGCT+GGG | - | chr4_1:3632167-3632186 | Msa0529850:CDS | 40.0% | |
| ! | AGTAGCTTTTCAGAGTGCAA+AGG | - | chr4_1:3632199-3632218 | Msa0529850:CDS | 40.0% |
| ! | GTAGCTTTTCAGAGTGCAAA+GGG | - | chr4_1:3632200-3632219 | Msa0529850:CDS | 40.0% |
| ! | AGAGTGCAAAGGGTCAATTT+TGG | - | chr4_1:3632210-3632229 | Msa0529850:CDS | 40.0% |
| ! | GAGTGCAAAGGGTCAATTTT+GGG | - | chr4_1:3632211-3632230 | Msa0529850:CDS | 40.0% |
| TTAAACTCAGTTCAGCTCGT+TGG | - | chr4_1:3632335-3632354 | Msa0529850:intron | 40.0% | |
| AGAACAATGTCTGGGTTACT+TGG | - | chr4_1:3632371-3632390 | Msa0529850:intron | 40.0% | |
| GAACAATGTCTGGGTTACTT+GGG | - | chr4_1:3632372-3632391 | Msa0529850:intron | 40.0% | |
| AACAATGTCTGGGTTACTTG+GGG | - | chr4_1:3632373-3632392 | Msa0529850:intron | 40.0% | |
| GTCTCTAAGCTAATTGGAGA+TGG | + | chr4_1:3633120-3633139 | None:intergenic | 40.0% | |
| ! | GTCTCTAAACAAGTTGGAGA+TGG | + | chr4_1:3633180-3633199 | None:intergenic | 40.0% |
| GTGCAGAACTGGTATTGTTA+TGG | - | chr4_1:3633349-3633368 | Msa0529850:intron | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | - | chr4_1:3633360-3633379 | Msa0529850:intron | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | - | chr4_1:3633496-3633515 | Msa0529850:CDS | 40.0% | |
| !! | AAGTTTTGGCAGCACCATTA+AGG | + | chr4_1:3633513-3633532 | None:intergenic | 40.0% |
| TGGGTACTCAGGAAAATACT+TGG | + | chr4_1:3633677-3633696 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | + | chr4_1:3633696-3633715 | None:intergenic | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | + | chr4_1:3633697-3633716 | None:intergenic | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | - | chr4_1:3633988-3634007 | Msa0529850:CDS | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | - | chr4_1:3634091-3634110 | Msa0529850:intron | 40.0% | |
| !! | GTCAAAGTTGGTATACCTAG+AGG | + | chr4_1:3634117-3634136 | None:intergenic | 40.0% |
| CTTCTCCTAAAAATAGTGGC+TGG | + | chr4_1:3634266-3634285 | None:intergenic | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | + | chr4_1:3634295-3634314 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | + | chr4_1:3634299-3634318 | None:intergenic | 40.0% | |
| ! | CGATATTTGTTAACGCGGTT+TGG | - | chr4_1:3634613-3634632 | Msa0529850:CDS | 40.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | - | chr4_1:3634907-3634926 | Msa0529850:intron | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | - | chr4_1:3634965-3634984 | Msa0529850:intron | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | + | chr4_1:3635007-3635026 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | + | chr4_1:3635008-3635027 | None:intergenic | 40.0% | |
| AAGCAAGCAGAGTTCATGAC+AGG | + | chr4_1:3630655-3630674 | None:intergenic | 45.0% | |
| CTGGCCAAATGTGATTGTAC+AGG | - | chr4_1:3631055-3631074 | Msa0529850:intron | 45.0% | |
| GAACTGGGGAGTTTATGAGA+TGG | - | chr4_1:3631353-3631372 | Msa0529850:intron | 45.0% | |
| CGCCAACAGTCATTGATCAA+TGG | - | chr4_1:3631467-3631486 | Msa0529850:intron | 45.0% | |
| GTTGCAATTGCTGGACTTCT+AGG | - | chr4_1:3631646-3631665 | Msa0529850:intron | 45.0% | |
| TGCTTGGGGAAGTCAATCAT+TGG | + | chr4_1:3631694-3631713 | None:intergenic | 45.0% | |
| CAACAACTGTCTTCTGCTTG+GGG | + | chr4_1:3631708-3631727 | None:intergenic | 45.0% | |
| CTTAAGCATTAGATCCAGCC+TGG | - | chr4_1:3631886-3631905 | Msa0529850:intron | 45.0% | |
| CAAACTTAACGATGGAACCC+AGG | + | chr4_1:3631907-3631926 | None:intergenic | 45.0% | |
| TTGTTTGGGGAGGTAGTACT+AGG | - | chr4_1:3631924-3631943 | Msa0529850:intron | 45.0% | |
| GAATGATCTCCTAGGAATGC+TGG | - | chr4_1:3631949-3631968 | Msa0529850:intron | 45.0% | |
| CATGTGTAGCATGGATTTGG+AGG | + | chr4_1:3632435-3632454 | None:intergenic | 45.0% | |
| ! | AGACGGAATTTTTCCGTGTC+TGG | - | chr4_1:3633074-3633093 | Msa0529850:intron | 45.0% |
| ! | TTTTCCGTGTCTGGTAGAGA+CGG | - | chr4_1:3633083-3633102 | Msa0529850:intron | 45.0% |
| GATGGAATTGGAGACGGAAT+TGG | + | chr4_1:3633162-3633181 | None:intergenic | 45.0% | |
| GTTGGAGATGGAATTGGAGA+CGG | + | chr4_1:3633168-3633187 | None:intergenic | 45.0% | |
| GATTTCGCCCGTCTCTAATT+TGG | - | chr4_1:3633223-3633242 | Msa0529850:intron | 45.0% | |
| AGTGGCTGAACAATCAGCAT+GGG | - | chr4_1:3633378-3633397 | Msa0529850:intron | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | + | chr4_1:3633444-3633463 | None:intergenic | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | + | chr4_1:3633445-3633464 | None:intergenic | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | + | chr4_1:3633504-3633523 | None:intergenic | 45.0% |
| TGTGAAACTGCTTTGCATCG+TGG | - | chr4_1:3633631-3633650 | Msa0529850:intron | 45.0% | |
| CTTAGTTGAGAGAGGAGAGT+TGG | + | chr4_1:3633813-3633832 | None:intergenic | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | - | chr4_1:3633987-3634006 | Msa0529850:CDS | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | - | chr4_1:3633989-3634008 | Msa0529850:CDS | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | - | chr4_1:3634090-3634109 | Msa0529850:intron | 45.0% | |
| GTCGCAGAGATAGGTACAAT+TGG | + | chr4_1:3634639-3634658 | None:intergenic | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | + | chr4_1:3634998-3635017 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAAATAATCAT+GGG | + | chr4_1:3630586-3630605 | None:intergenic | 5.0% |
| !! | AAAAAAAATAAAAATAATCA+TGG | + | chr4_1:3630587-3630606 | None:intergenic | 5.0% |
| !!! | ATTATCATATTATTATTTTT+AGG | - | chr4_1:3632778-3632797 | Msa0529850:intron | 5.0% |
| !! | AATATTAAGATTAATTAATT+AGG | - | chr4_1:3633301-3633320 | Msa0529850:intron | 5.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | + | chr4_1:3635141-3635160 | None:intergenic | 5.0% |
| ATCTGGCTGAAGCCTATGTG+TGG | - | chr4_1:3630797-3630816 | Msa0529850:CDS | 50.0% | |
| TGGAAGCTGTCTTTACTCGC+TGG | - | chr4_1:3631036-3631055 | Msa0529850:intron | 50.0% | |
| ! | ATGTTGCTGTTACAGGCCTC+AGG | - | chr4_1:3631309-3631328 | Msa0529850:intron | 50.0% |
| !! | ACAGCTGGTGTTGCAATTGC+TGG | - | chr4_1:3631637-3631656 | Msa0529850:intron | 50.0% |
| ! | CTAGGTGCTGTAAGAGCTCA+AGG | - | chr4_1:3631664-3631683 | Msa0529850:intron | 50.0% |
| GTGCTGTAAGAGCTCAAGGA+AGG | - | chr4_1:3631668-3631687 | Msa0529850:intron | 50.0% | |
| !! | CAGTTGTTGTTGGTGCTGCA+AGG | - | chr4_1:3631719-3631738 | Msa0529850:intron | 50.0% |
| GTGTAGCATGGATTTGGAGG+CGG | + | chr4_1:3632432-3632451 | None:intergenic | 50.0% | |
| GATTCCGTCTCTACCAGACA+CGG | + | chr4_1:3633090-3633109 | None:intergenic | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | - | chr4_1:3633377-3633396 | Msa0529850:intron | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | - | chr4_1:3633429-3633448 | Msa0529850:intron | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | - | chr4_1:3633436-3633455 | Msa0529850:CDS | 50.0% | |
| AACTGCTTTGCATCGTGGTG+AGG | - | chr4_1:3633636-3633655 | Msa0529850:intron | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | + | chr4_1:3633688-3633707 | None:intergenic | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | + | chr4_1:3634095-3634114 | None:intergenic | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | + | chr4_1:3634994-3635013 | None:intergenic | 50.0% | |
| TTGCAGCAGCATCGCCTTGA+TGG | - | chr4_1:3630981-3631000 | Msa0529850:intron | 55.0% | |
| CTTAACGATGGAACCCAGGC+TGG | + | chr4_1:3631903-3631922 | None:intergenic | 55.0% | |
| TGGAGACGGAATTGGATCCG+TGG | + | chr4_1:3633154-3633173 | None:intergenic | 55.0% | |
| AACTTGATCTTGGGGTGGGG+TGG | - | chr4_1:3633992-3634011 | Msa0529850:CDS | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | - | chr4_1:3633993-3634012 | Msa0529850:CDS | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | - | chr4_1:3634099-3634118 | Msa0529850:intron | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | + | chr4_1:3635004-3635023 | None:intergenic | 55.0% | |
| TTCTCTACCCAGGGGACAGC+TGG | - | chr4_1:3631622-3631641 | Msa0529850:intron | 60.0% | |
| TGCAACACCAGCTGTCCCCT+GGG | + | chr4_1:3631632-3631651 | None:intergenic | 60.0% | |
| TTGCAACACCAGCTGTCCCC+TGG | + | chr4_1:3631633-3631652 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3630483 | 3635197 | 3630483 | ID=Msa0529850;Name=Msa0529850 |
| chr4_1 | mRNA | 3630483 | 3635197 | 3630483 | ID=Msa0529850-mRNA-1;Parent=Msa0529850;Name=Msa0529850-mRNA-1;_AED=0.29;_eAED=0.29;_QI=112|0.5|0.55|1|0.75|0.66|9|170|298 |
| chr4_1 | exon | 3630483 | 3630824 | 3630483 | ID=Msa0529850-mRNA-1:exon:1087;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3632003 | 3632112 | 3632003 | ID=Msa0529850-mRNA-1:exon:1086;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3632119 | 3632325 | 3632119 | ID=Msa0529850-mRNA-1:exon:1085;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3632984 | 3633049 | 3632984 | ID=Msa0529850-mRNA-1:exon:1084;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3633227 | 3633307 | 3633227 | ID=Msa0529850-mRNA-1:exon:1083;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3633433 | 3633544 | 3633433 | ID=Msa0529850-mRNA-1:exon:1082;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3633940 | 3634046 | 3633940 | ID=Msa0529850-mRNA-1:exon:1081;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3634604 | 3634707 | 3634604 | ID=Msa0529850-mRNA-1:exon:1080;Parent=Msa0529850-mRNA-1 |
| chr4_1 | exon | 3635148 | 3635197 | 3635148 | ID=Msa0529850-mRNA-1:exon:1079;Parent=Msa0529850-mRNA-1 |
| chr4_1 | five_prime_UTR | 3635148 | 3635197 | 3635148 | ID=Msa0529850-mRNA-1:five_prime_utr;Parent=Msa0529850-mRNA-1 |
| chr4_1 | five_prime_UTR | 3634646 | 3634707 | 3634646 | ID=Msa0529850-mRNA-1:five_prime_utr;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3634604 | 3634645 | 3634604 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3633940 | 3634046 | 3633940 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3633433 | 3633544 | 3633433 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3633227 | 3633307 | 3633227 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3632984 | 3633049 | 3632984 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3632119 | 3632325 | 3632119 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3632003 | 3632112 | 3632003 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | CDS | 3630653 | 3630824 | 3630653 | ID=Msa0529850-mRNA-1:cds;Parent=Msa0529850-mRNA-1 |
| chr4_1 | three_prime_UTR | 3630483 | 3630652 | 3630483 | ID=Msa0529850-mRNA-1:three_prime_utr;Parent=Msa0529850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
