Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663480 | XP_003604238.1 | 98.512 | 336 | 5 | 0 | 1 | 336 | 1 | 336 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663480 | sp|A0A059TC02|CCR1_PETHY | 75.153 | 326 | 79 | 1 | 9 | 334 | 3 | 326 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663480 | G7JEE5 | 98.512 | 336 | 5 | 0 | 1 | 336 | 1 | 336 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0663480 | 0.807384 | 5.188680e-50 | -8.615850e-47 |
| Msa0037180 | Msa0663480 | 0.808979 | 2.373651e-50 | -8.615850e-47 |
| Msa0045810 | Msa0663480 | 0.822448 | 2.356287e-53 | -8.615850e-47 |
| Msa0062190 | Msa0663480 | 0.819994 | 8.671622e-53 | -8.615850e-47 |
| Msa0072180 | Msa0663480 | 0.826051 | 3.352731e-54 | -8.615850e-47 |
| Msa0092220 | Msa0663480 | 0.804631 | 1.968582e-49 | -8.615850e-47 |
| Msa0106540 | Msa0663480 | 0.810182 | 1.309112e-50 | -8.615850e-47 |
| Msa0604220 | Msa0663480 | 0.800910 | 1.154741e-48 | -8.615850e-47 |
| Msa0610700 | Msa0663480 | -0.830525 | 2.796833e-55 | -8.615850e-47 |
| Msa0625780 | Msa0663480 | 0.965143 | 3.179956e-124 | -8.615850e-47 |
| Msa0663480 | Msa0685060 | 0.825035 | 5.836718e-54 | -8.615850e-47 |
| Msa0663480 | Msa0758810 | -0.800825 | 1.201654e-48 | -8.615850e-47 |
| Msa0663480 | Msa0772490 | 0.815512 | 8.899792e-52 | -8.615850e-47 |
| Msa0663480 | Msa0818720 | 0.802262 | 6.099119e-49 | -8.615850e-47 |
| Msa0663480 | Msa0818760 | 0.805022 | 1.631713e-49 | -8.615850e-47 |
| Msa0663480 | Msa0827870 | 0.804441 | 2.157179e-49 | -8.615850e-47 |
| Msa0663480 | Msa0838620 | -0.818200 | 2.218851e-52 | -8.615850e-47 |
| Msa0663480 | Msa0853590 | 0.820359 | 7.151149e-53 | -8.615850e-47 |
| Msa0663480 | Msa0930770 | 0.803522 | 3.349377e-49 | -8.615850e-47 |
| Msa0663480 | Msa0945030 | 0.811532 | 6.679291e-51 | -8.615850e-47 |
| Msa0663480 | Msa0967780 | 0.814834 | 1.259288e-51 | -8.615850e-47 |
| Msa0663480 | Msa1013190 | 0.809953 | 1.466515e-50 | -8.615850e-47 |
| Msa0663480 | Msa1022420 | 0.815282 | 1.001410e-51 | -8.615850e-47 |
| Msa0663480 | Msa1044250 | 0.805181 | 1.510868e-49 | -8.615850e-47 |
| Msa0663480 | Msa1068720 | 0.811883 | 5.603627e-51 | -8.615850e-47 |
| Msa0663480 | Msa1068940 | 0.800094 | 1.693511e-48 | -8.615850e-47 |
| Msa0663480 | Msa1068950 | 0.824054 | 9.936838e-54 | -8.615850e-47 |
| Msa0663480 | Msa1082410 | 0.805021 | 1.632224e-49 | -8.615850e-47 |
| Msa0663480 | Msa1129200 | -0.811484 | 6.842290e-51 | -8.615850e-47 |
| Msa0663480 | Msa1155610 | 0.818169 | 2.254914e-52 | -8.615850e-47 |
| Msa0663480 | Msa1156720 | 0.841743 | 3.947588e-58 | -8.615850e-47 |
| Msa0663480 | Msa1160530 | 0.818733 | 1.679860e-52 | -8.615850e-47 |
| Msa0663480 | Msa1203650 | 0.800673 | 1.290700e-48 | -8.615850e-47 |
| Msa0663480 | Msa1205270 | -0.820790 | 5.694561e-53 | -8.615850e-47 |
| Msa0663480 | Msa1221270 | 0.815035 | 1.135983e-51 | -8.615850e-47 |
| Msa0663480 | Msa1337350 | 0.814653 | 1.380851e-51 | -8.615850e-47 |
| Msa0663480 | Msa1342360 | -0.811337 | 7.361731e-51 | -8.615850e-47 |
| Msa0663480 | Msa1365820 | 0.816147 | 6.425392e-52 | -8.615850e-47 |
| Msa0663480 | Msa1368390 | 0.831535 | 1.579558e-55 | -8.615850e-47 |
| Msa0663480 | Msa1405830 | 0.811831 | 5.750351e-51 | -8.615850e-47 |
| Msa0663480 | Msa1408390 | 0.801031 | 1.090632e-48 | -8.615850e-47 |
| Msa0663480 | Msa1457770 | 0.815312 | 9.859992e-52 | -8.615850e-47 |
| Msa0143590 | Msa0663480 | 0.801876 | 7.322782e-49 | -8.615850e-47 |
| Msa0177320 | Msa0663480 | 0.815781 | 7.754700e-52 | -8.615850e-47 |
| Msa0204950 | Msa0663480 | 0.840342 | 9.212502e-58 | -8.615850e-47 |
| Msa0216340 | Msa0663480 | 0.825835 | 3.774597e-54 | -8.615850e-47 |
| Msa0378350 | Msa0663480 | 0.802702 | 4.948097e-49 | -8.615850e-47 |
| Msa0386880 | Msa0663480 | 0.824852 | 6.446660e-54 | -8.615850e-47 |
| Msa0389460 | Msa0663480 | 0.803219 | 3.869736e-49 | -8.615850e-47 |
| Msa0403740 | Msa0663480 | -0.813500 | 2.480930e-51 | -8.615850e-47 |
| Msa0456450 | Msa0663480 | -0.811773 | 5.920538e-51 | -8.615850e-47 |
| Msa0457070 | Msa0663480 | -0.804510 | 2.087175e-49 | -8.615850e-47 |
| Msa0467330 | Msa0663480 | 0.800746 | 1.247279e-48 | -8.615850e-47 |
| Msa0249850 | Msa0663480 | 0.815987 | 6.976286e-52 | -8.615850e-47 |
| Msa0256540 | Msa0663480 | 0.819895 | 9.133239e-53 | -8.615850e-47 |
| Msa0281470 | Msa0663480 | 0.834239 | 3.362452e-56 | -8.615850e-47 |
| Msa0318490 | Msa0663480 | 0.806926 | 6.489453e-50 | -8.615850e-47 |
| Msa0320600 | Msa0663480 | 0.822596 | 2.176778e-53 | -8.615850e-47 |
| Msa0334320 | Msa0663480 | 0.839945 | 1.169619e-57 | -8.615850e-47 |
| Msa0364030 | Msa0663480 | -0.814075 | 1.852700e-51 | -8.615850e-47 |
| Msa0484210 | Msa0663480 | -0.815626 | 8.393590e-52 | -8.615850e-47 |
| Msa0529850 | Msa0663480 | 0.854614 | 1.094336e-61 | -8.615850e-47 |
| Msa0565700 | Msa0663480 | 0.827184 | 1.799359e-54 | -8.615850e-47 |
| Msa0579070 | Msa0663480 | -0.834565 | 2.784629e-56 | -8.615850e-47 |
| Msa0581350 | Msa0663480 | 0.807499 | 4.905913e-50 | -8.615850e-47 |
| Msa0585330 | Msa0663480 | 0.966943 | 1.334115e-126 | -8.615850e-47 |
| Msa0585840 | Msa0663480 | 0.962801 | 2.597291e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663480 | MtrunA17_Chr4g0001321 | 98.512 | 336 | 5 | 0 | 1 | 336 | 1 | 336 | 0.0 | 686 |
| Msa0663480 | MtrunA17_Chr2g0333781 | 80.851 | 329 | 60 | 2 | 7 | 335 | 12 | 337 | 0.0 | 533 |
| Msa0663480 | MtrunA17_Chr3g0077221 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 5.03e-105 | 310 |
| Msa0663480 | MtrunA17_Chr3g0077231 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 1.54e-103 | 306 |
| Msa0663480 | MtrunA17_Chr4g0039311 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 3.57e-96 | 288 |
| Msa0663480 | MtrunA17_Chr5g0431311 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 5.64e-96 | 287 |
| Msa0663480 | MtrunA17_Chr4g0002661 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 3.21e-95 | 285 |
| Msa0663480 | MtrunA17_Chr8g0364051 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 4.55e-95 | 285 |
| Msa0663480 | MtrunA17_Chr4g0039321 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 2.53e-94 | 283 |
| Msa0663480 | MtrunA17_Chr8g0363831 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 1.75e-92 | 278 |
| Msa0663480 | MtrunA17_Chr4g0002961 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 1.80e-88 | 268 |
| Msa0663480 | MtrunA17_Chr3g0106111 | 41.772 | 316 | 177 | 3 | 15 | 324 | 3 | 317 | 1.41e-82 | 253 |
| Msa0663480 | MtrunA17_Chr5g0423551 | 41.139 | 316 | 178 | 5 | 18 | 326 | 5 | 319 | 4.13e-79 | 244 |
| Msa0663480 | MtrunA17_Chr1g0155411 | 41.104 | 326 | 174 | 11 | 15 | 327 | 6 | 326 | 1.84e-75 | 235 |
| Msa0663480 | MtrunA17_Chr2g0331211 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 2.01e-75 | 235 |
| Msa0663480 | MtrunA17_Chr2g0291541 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 4.29e-75 | 234 |
| Msa0663480 | MtrunA17_Chr1g0155431 | 40.854 | 328 | 172 | 12 | 15 | 327 | 6 | 326 | 2.15e-72 | 227 |
| Msa0663480 | MtrunA17_Chr4g0048961 | 35.077 | 325 | 190 | 9 | 18 | 324 | 15 | 336 | 5.37e-53 | 177 |
| Msa0663480 | MtrunA17_Chr7g0245741 | 33.028 | 327 | 202 | 9 | 13 | 326 | 4 | 326 | 5.59e-53 | 177 |
| Msa0663480 | MtrunA17_Chr7g0245671 | 33.535 | 331 | 198 | 12 | 13 | 326 | 4 | 329 | 1.54e-50 | 171 |
| Msa0663480 | MtrunA17_Chr7g0245641 | 33.939 | 330 | 198 | 11 | 13 | 326 | 41 | 366 | 4.60e-50 | 171 |
| Msa0663480 | MtrunA17_Chr4g0042101 | 34.328 | 335 | 190 | 10 | 18 | 327 | 25 | 354 | 4.96e-49 | 167 |
| Msa0663480 | MtrunA17_Chr7g0245731 | 32.722 | 327 | 203 | 10 | 13 | 326 | 54 | 376 | 2.06e-48 | 166 |
| Msa0663480 | MtrunA17_Chr7g0245691 | 32.036 | 334 | 200 | 12 | 13 | 326 | 4 | 330 | 7.56e-47 | 161 |
| Msa0663480 | MtrunA17_Chr4g0010991 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 8.19e-44 | 153 |
| Msa0663480 | MtrunA17_Chr7g0245631 | 32.317 | 328 | 203 | 12 | 13 | 326 | 4 | 326 | 4.89e-43 | 151 |
| Msa0663480 | MtrunA17_Chr6g0450211 | 34.667 | 300 | 177 | 8 | 13 | 299 | 51 | 344 | 3.36e-41 | 147 |
| Msa0663480 | MtrunA17_Chr7g0245711 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 5.29e-34 | 126 |
| Msa0663480 | MtrunA17_Chr5g0411071 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 4.21e-33 | 124 |
| Msa0663480 | MtrunA17_Chr2g0282001 | 26.923 | 338 | 218 | 10 | 17 | 328 | 7 | 341 | 2.35e-27 | 109 |
| Msa0663480 | MtrunA17_Chr7g0275521 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 1.78e-26 | 107 |
| Msa0663480 | MtrunA17_Chr2g0281991 | 27.586 | 348 | 203 | 13 | 17 | 328 | 8 | 342 | 3.84e-25 | 103 |
| Msa0663480 | MtrunA17_Chr2g0282011 | 26.100 | 341 | 209 | 11 | 17 | 324 | 8 | 338 | 2.58e-24 | 101 |
| Msa0663480 | MtrunA17_Chr3g0080551 | 41.284 | 109 | 61 | 3 | 107 | 212 | 17 | 125 | 1.08e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663480 | AT1G80820.1 | 73.651 | 315 | 83 | 0 | 15 | 329 | 6 | 320 | 4.86e-170 | 476 |
| Msa0663480 | AT1G15950.3 | 72.555 | 317 | 87 | 0 | 10 | 326 | 6 | 322 | 3.81e-166 | 466 |
| Msa0663480 | AT1G15950.1 | 72.555 | 317 | 87 | 0 | 10 | 326 | 6 | 322 | 3.81e-166 | 466 |
| Msa0663480 | AT1G15950.2 | 71.845 | 309 | 87 | 0 | 10 | 318 | 6 | 314 | 1.58e-158 | 447 |
| Msa0663480 | AT1G80820.2 | 72.932 | 266 | 72 | 0 | 15 | 280 | 6 | 271 | 8.28e-137 | 389 |
| Msa0663480 | AT1G15950.6 | 71.852 | 270 | 76 | 0 | 11 | 280 | 7 | 276 | 1.96e-135 | 386 |
| Msa0663480 | AT1G15950.4 | 71.168 | 274 | 79 | 0 | 11 | 284 | 7 | 280 | 3.23e-135 | 386 |
| Msa0663480 | AT1G15950.5 | 71.747 | 269 | 76 | 0 | 11 | 279 | 7 | 275 | 1.55e-134 | 384 |
| Msa0663480 | AT1G15950.7 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 8.33e-115 | 333 |
| Msa0663480 | AT5G19440.1 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 6.95e-105 | 310 |
| Msa0663480 | AT1G51410.1 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 7.88e-99 | 295 |
| Msa0663480 | AT5G58490.1 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 9.48e-88 | 266 |
| Msa0663480 | AT1G66800.1 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 2.79e-87 | 265 |
| Msa0663480 | AT1G09480.2 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 8.41e-87 | 264 |
| Msa0663480 | AT1G09480.1 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 2.46e-86 | 265 |
| Msa0663480 | AT1G09510.1 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 9.35e-86 | 261 |
| Msa0663480 | AT2G33590.1 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.85e-85 | 261 |
| Msa0663480 | AT1G09490.1 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 3.19e-85 | 260 |
| Msa0663480 | AT1G09500.1 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 1.54e-81 | 251 |
| Msa0663480 | AT2G02400.1 | 41.195 | 318 | 178 | 4 | 15 | 326 | 4 | 318 | 1.59e-81 | 251 |
| Msa0663480 | AT4G35420.1 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 2.05e-80 | 248 |
| Msa0663480 | AT1G76470.1 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.62e-80 | 247 |
| Msa0663480 | AT1G09500.3 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 6.64e-75 | 232 |
| Msa0663480 | AT1G68540.1 | 40.063 | 317 | 180 | 5 | 19 | 326 | 6 | 321 | 1.02e-73 | 231 |
| Msa0663480 | AT2G33600.1 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.86e-73 | 230 |
| Msa0663480 | AT1G25460.1 | 36.508 | 315 | 192 | 4 | 19 | 326 | 6 | 319 | 1.61e-65 | 209 |
| Msa0663480 | AT5G42800.1 | 38.769 | 325 | 185 | 9 | 15 | 328 | 6 | 327 | 6.51e-65 | 210 |
| Msa0663480 | AT1G09490.2 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 3.12e-64 | 205 |
| Msa0663480 | AT1G09500.2 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.56e-61 | 198 |
| Msa0663480 | AT2G45400.1 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 2.43e-52 | 177 |
| Msa0663480 | AT1G61720.1 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 2.66e-50 | 171 |
| Msa0663480 | AT2G45400.2 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 2.63e-48 | 165 |
| Msa0663480 | AT4G27250.1 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 5.50e-47 | 162 |
| Msa0663480 | AT4G27250.2 | 35.599 | 309 | 172 | 11 | 18 | 306 | 14 | 315 | 1.89e-46 | 161 |
| Msa0663480 | AT1G68540.2 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.08e-46 | 156 |
| Msa0663480 | AT2G23910.1 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 4.25e-44 | 154 |
| Msa0663480 | AT2G23910.2 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 5.57e-44 | 152 |
| Msa0663480 | AT2G23910.3 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 8.11e-44 | 152 |
| Msa0663480 | AT4G30470.1 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.87e-38 | 139 |
| Msa0663480 | AT5G14700.1 | 33.574 | 277 | 160 | 8 | 12 | 270 | 50 | 320 | 1.56e-36 | 135 |
| Msa0663480 | AT2G45400.3 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.18e-35 | 131 |
| Msa0663480 | AT2G23910.4 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.44e-34 | 127 |
| Msa0663480 | AT2G45400.4 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 2.20e-33 | 124 |
| Msa0663480 | AT5G14700.2 | 32.889 | 225 | 131 | 6 | 12 | 221 | 50 | 269 | 7.23e-28 | 110 |
| Msa0663480 | AT4G33360.2 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 2.71e-17 | 81.6 |
| Msa0663480 | AT4G33360.3 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 3.13e-17 | 81.6 |
| Msa0663480 | AT4G33360.1 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 3.78e-17 | 81.6 |
Find 89 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.148678 | 4_4:-2328218 | None:intergenic |
| TAAGAAGAAATAAATTAATT+TGG | 0.207846 | 4_4:-2327424 | None:intergenic |
| CTGGCGGGTTTATAGCTTCT+TGG | 0.222359 | 4_4:+2327522 | Msa0663480:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4_4:+2328564 | Msa0663480:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4_4:+2328504 | Msa0663480:CDS |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4_4:-2327841 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4_4:+2328719 | Msa0663480:CDS |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4_4:+2328476 | Msa0663480:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4_4:+2328193 | Msa0663480:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4_4:+2327846 | Msa0663480:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4_4:-2329948 | None:intergenic |
| TCTATCCAATCTGTTGTTCA+TGG | 0.337063 | 4_4:+2327922 | Msa0663480:CDS |
| CTATAATATAGTACTCTTGT+AGG | 0.339137 | 4_4:+2330115 | Msa0663480:three_prime_UTR |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4_4:+2328663 | Msa0663480:CDS |
| ATAATGTGATAACTCAAATA+TGG | 0.343716 | 4_4:-2327334 | None:intergenic |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4_4:-2328119 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4_4:+2330021 | Msa0663480:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4_4:-2328592 | None:intergenic |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4_4:-2327592 | None:intergenic |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.366349 | 4_4:+2327541 | Msa0663480:CDS |
| TCAAAGACTTGGTGGACATT+AGG | 0.371496 | 4_4:+2327230 | Msa0663480:five_prime_UTR |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4_4:+2328417 | Msa0663480:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.380185 | 4_4:-2328217 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4_4:-2330068 | None:intergenic |
| GTAAGAGGTTACACTGTTAG+AGG | 0.390198 | 4_4:+2327563 | Msa0663480:CDS |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4_4:+2328614 | Msa0663480:CDS |
| TTATTCTTTGCTATCTCCAT+TGG | 0.403938 | 4_4:+2327353 | Msa0663480:five_prime_UTR |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4_4:+2327503 | Msa0663480:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4_4:-2327499 | None:intergenic |
| GTCAAACTTCTCTTGGTAAG+AGG | 0.412554 | 4_4:+2327548 | Msa0663480:CDS |
| AAGTGACACATTGAGCAATA+TGG | 0.424890 | 4_4:-2327290 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4_4:+2328418 | Msa0663480:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4_4:-2328528 | None:intergenic |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4_4:-2330011 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4_4:-2328510 | None:intergenic |
| TATAATATAGTACTCTTGTA+GGG | 0.442040 | 4_4:+2330116 | Msa0663480:three_prime_UTR |
| GGAAGATAGATGCTTCTTGT+TGG | 0.442890 | 4_4:-2327313 | None:intergenic |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4_4:-2328540 | None:intergenic |
| CTTACAGGGTTGTCGGTGAC+AGG | 0.466203 | 4_4:-2327973 | None:intergenic |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4_4:+2327879 | Msa0663480:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4_4:+2329974 | Msa0663480:CDS |
| AAAATTCCTTACAGGGTTGT+CGG | 0.489586 | 4_4:-2327980 | None:intergenic |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4_4:+2327470 | Msa0663480:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4_4:-2327465 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4_4:+2328094 | Msa0663480:intron |
| AACACTTACTTGGTAGGAAG+TGG | 0.504048 | 4_4:-2328762 | None:intergenic |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4_4:+2328620 | Msa0663480:CDS |
| GTTGTGTTCACTTCATCGAT+TGG | 0.505971 | 4_4:+2328179 | Msa0663480:CDS |
| AGCTATAAACCCGCCAGCAC+CGG | 0.506486 | 4_4:-2327516 | None:intergenic |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4_4:+2329980 | Msa0663480:CDS |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4_4:+2327497 | Msa0663480:CDS |
| TTGTAGTTGATGAATCGTAT+TGG | 0.525667 | 4_4:+2328237 | Msa0663480:CDS |
| GGCAACCATGAACAACAGAT+TGG | 0.526807 | 4_4:-2327927 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4_4:-2330078 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4_4:+2328110 | Msa0663480:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4_4:+2327507 | Msa0663480:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4_4:-2327461 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4_4:+2327506 | Msa0663480:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4_4:+2329975 | Msa0663480:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4_4:-2328753 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4_4:+2327931 | Msa0663480:CDS |
| ATATGAAACACTTACTTGGT+AGG | 0.553678 | 4_4:-2328768 | None:intergenic |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4_4:-2330077 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4_4:+2327581 | Msa0663480:CDS |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4_4:+2330038 | Msa0663480:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4_4:+2328497 | Msa0663480:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4_4:-2328742 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4_4:-2330074 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4_4:+2327850 | Msa0663480:CDS |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4_4:-2328569 | None:intergenic |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4_4:-2327588 | None:intergenic |
| CACATTGAGCAATATGGCAA+AGG | 0.590539 | 4_4:-2327284 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4_4:+2328184 | Msa0663480:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4_4:+2328704 | Msa0663480:CDS |
| ATAATATAGTACTCTTGTAG+GGG | 0.610642 | 4_4:+2330117 | Msa0663480:three_prime_UTR |
| CACTAGAAAAGAAAGACCAA+TGG | 0.621788 | 4_4:-2327369 | None:intergenic |
| AGGGTTGTCGGTGACAGGAG+AGG | 0.622915 | 4_4:-2327968 | None:intergenic |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4_4:+2328445 | Msa0663480:CDS |
| AGGCTGTGTGGAACACACCA+TGG | 0.639078 | 4_4:-2327948 | None:intergenic |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4_4:+2328446 | Msa0663480:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4_4:+2327473 | Msa0663480:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4_4:-2330064 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4_4:+2327863 | Msa0663480:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.647055 | 4_4:-2328761 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4_4:-2328509 | None:intergenic |
| CGGTGACAGGAGAGGCTGTG+TGG | 0.679397 | 4_4:-2327960 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4_4:+2328699 | Msa0663480:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4_4:+2328268 | Msa0663480:CDS |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4_4:+2328428 | Msa0663480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGAAATAAATTAATT+TGG | - | chr4_4:2327427-2327446 | None:intergenic | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | + | chr4_4:2327721-2327740 | Msa0663480:intron | 10.0% |
| !!! | TTTTATTTGTATATAATTAG+AGG | + | chr4_4:2327816-2327835 | Msa0663480:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | + | chr4_4:2328804-2328823 | Msa0663480:intron | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | + | chr4_4:2329405-2329424 | Msa0663480:intron | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | + | chr4_4:2329468-2329487 | Msa0663480:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | + | chr4_4:2329469-2329488 | Msa0663480:intron | 10.0% |
| !! | AATTATTTATGATATATTCT+TGG | - | chr4_4:2329562-2329581 | None:intergenic | 10.0% |
| !! | TTATATAAAAATCAAAGACT+TGG | + | chr4_4:2327219-2327238 | Msa0663480:five_prime_UTR | 15.0% |
| !! | ATTTGGTATAAGAAAAAAAA+TGG | - | chr4_4:2327410-2327429 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | - | chr4_4:2328015-2328034 | None:intergenic | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | - | chr4_4:2329236-2329255 | None:intergenic | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | - | chr4_4:2329402-2329421 | None:intergenic | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | + | chr4_4:2329404-2329423 | Msa0663480:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | - | chr4_4:2329444-2329463 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | + | chr4_4:2329565-2329584 | Msa0663480:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | - | chr4_4:2329638-2329657 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | + | chr4_4:2329839-2329858 | Msa0663480:intron | 15.0% |
| !!! | AATTGTTTTTTACTCGTTTT+TGG | - | chr4_4:2327201-2327220 | None:intergenic | 20.0% |
| !! | ATAATGTGATAACTCAAATA+TGG | - | chr4_4:2327337-2327356 | None:intergenic | 20.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | + | chr4_4:2327659-2327678 | Msa0663480:intron | 20.0% |
| !! | TTATAAAGAGTAACCTTATA+AGG | + | chr4_4:2328050-2328069 | Msa0663480:intron | 20.0% |
| !! | AATGATTAATTCACCTTATA+AGG | - | chr4_4:2328066-2328085 | None:intergenic | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | + | chr4_4:2328069-2328088 | Msa0663480:intron | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | + | chr4_4:2328082-2328101 | Msa0663480:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | + | chr4_4:2328476-2328495 | Msa0663480:CDS | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | - | chr4_4:2328999-2329018 | None:intergenic | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | + | chr4_4:2329015-2329034 | Msa0663480:intron | 20.0% |
| !!! | TTGAGTTTTTTTGTTTGTTA+GGG | - | chr4_4:2329137-2329156 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTTTTGTTTGTT+AGG | - | chr4_4:2329138-2329157 | None:intergenic | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | - | chr4_4:2329230-2329249 | None:intergenic | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | - | chr4_4:2329440-2329459 | None:intergenic | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | + | chr4_4:2329524-2329543 | Msa0663480:intron | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | + | chr4_4:2329525-2329544 | Msa0663480:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | + | chr4_4:2329838-2329857 | Msa0663480:intron | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | - | chr4_4:2329963-2329982 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | + | chr4_4:2330021-2330040 | Msa0663480:CDS | 20.0% |
| !! | TATAATATAGTACTCTTGTA+GGG | + | chr4_4:2330116-2330135 | Msa0663480:three_prime_UTR | 20.0% |
| ! | TATAAAAATCAAAGACTTGG+TGG | + | chr4_4:2327222-2327241 | Msa0663480:five_prime_UTR | 25.0% |
| !! | ACGTTTTCTCAATCTATAAA+AGG | + | chr4_4:2327258-2327277 | Msa0663480:five_prime_UTR | 25.0% |
| ! | TGGTATAAGAAAAAAAATGG+TGG | - | chr4_4:2327407-2327426 | None:intergenic | 25.0% |
| ! | AACAAAGAAAATTCCTTACA+GGG | - | chr4_4:2327990-2328009 | None:intergenic | 25.0% |
| ! | AAACAAAGAAAATTCCTTAC+AGG | - | chr4_4:2327991-2328010 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | + | chr4_4:2328406-2328425 | Msa0663480:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | - | chr4_4:2328531-2328550 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | - | chr4_4:2328543-2328562 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | + | chr4_4:2328614-2328633 | Msa0663480:CDS | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | - | chr4_4:2328998-2329017 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | - | chr4_4:2329000-2329019 | None:intergenic | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | - | chr4_4:2329041-2329060 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | - | chr4_4:2329042-2329061 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | - | chr4_4:2329203-2329222 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | + | chr4_4:2329276-2329295 | Msa0663480:intron | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | - | chr4_4:2329554-2329573 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | - | chr4_4:2329593-2329612 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | - | chr4_4:2329753-2329772 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | + | chr4_4:2329754-2329773 | Msa0663480:intron | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | + | chr4_4:2329755-2329774 | Msa0663480:intron | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | - | chr4_4:2329882-2329901 | None:intergenic | 25.0% |
| ! | CTATAATATAGTACTCTTGT+AGG | + | chr4_4:2330115-2330134 | Msa0663480:three_prime_UTR | 25.0% |
| ! | ATAATATAGTACTCTTGTAG+GGG | + | chr4_4:2330117-2330136 | Msa0663480:three_prime_UTR | 25.0% |
| ! | TTATTCTTTGCTATCTCCAT+TGG | + | chr4_4:2327353-2327372 | Msa0663480:five_prime_UTR | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | - | chr4_4:2327844-2327863 | None:intergenic | 30.0% |
| GAATGATCACTTGAAAGAAT+TGG | + | chr4_4:2327846-2327865 | Msa0663480:CDS | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | + | chr4_4:2328094-2328113 | Msa0663480:intron | 30.0% | |
| !! | TTGTAGTTGATGAATCGTAT+TGG | + | chr4_4:2328237-2328256 | Msa0663480:CDS | 30.0% |
| GTAGTGAATTAATCAAACCT+TGG | - | chr4_4:2328288-2328307 | None:intergenic | 30.0% | |
| ! | TGTTGCATTCACATAAGTTT+TGG | - | chr4_4:2328595-2328614 | None:intergenic | 30.0% |
| TTATGTTCATGTTAAGGATG+TGG | + | chr4_4:2328620-2328639 | Msa0663480:CDS | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | - | chr4_4:2328771-2328790 | None:intergenic | 30.0% | |
| GACTATATGAAACACTTACT+TGG | - | chr4_4:2328775-2328794 | None:intergenic | 30.0% | |
| CTTCTGACTTATCTAGATTA+GGG | + | chr4_4:2328844-2328863 | Msa0663480:intron | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | - | chr4_4:2328889-2328908 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | + | chr4_4:2329051-2329070 | Msa0663480:intron | 30.0% | |
| !! | TGACTTGTTCATTCTAAACA+GGG | - | chr4_4:2329097-2329116 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | - | chr4_4:2329098-2329117 | None:intergenic | 30.0% |
| ! | ATTTTACAGGTAAAAACGAG+TGG | + | chr4_4:2329289-2329308 | Msa0663480:intron | 30.0% |
| ATGACTTCTCCTAAAAATAG+TGG | - | chr4_4:2329344-2329363 | None:intergenic | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | + | chr4_4:2329816-2329835 | Msa0663480:intron | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | - | chr4_4:2329951-2329970 | None:intergenic | 30.0% | |
| AAATCAAAAGCTGAAAGACT+TGG | + | chr4_4:2329974-2329993 | Msa0663480:CDS | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | + | chr4_4:2329975-2329994 | Msa0663480:CDS | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | - | chr4_4:2330014-2330033 | None:intergenic | 30.0% | |
| AAGTGACACATTGAGCAATA+TGG | - | chr4_4:2327293-2327312 | None:intergenic | 35.0% | |
| CACTAGAAAAGAAAGACCAA+TGG | - | chr4_4:2327372-2327391 | None:intergenic | 35.0% | |
| ! | GACTGATGAAGTGTTATCAT+AGG | - | chr4_4:2327468-2327487 | None:intergenic | 35.0% |
| AAATTTGCATACCTGGGTTT+CGG | - | chr4_4:2327595-2327614 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | - | chr4_4:2327601-2327620 | None:intergenic | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | - | chr4_4:2327602-2327621 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | + | chr4_4:2327850-2327869 | Msa0663480:CDS | 35.0% | |
| TCTATCCAATCTGTTGTTCA+TGG | + | chr4_4:2327922-2327941 | Msa0663480:CDS | 35.0% | |
| AAAATTCCTTACAGGGTTGT+CGG | - | chr4_4:2327983-2328002 | None:intergenic | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | - | chr4_4:2328220-2328239 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | - | chr4_4:2328221-2328240 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | + | chr4_4:2328418-2328437 | Msa0663480:intron | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | + | chr4_4:2328663-2328682 | Msa0663480:CDS | 35.0% | |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | + | chr4_4:2328719-2328738 | Msa0663480:CDS | 35.0% |
| GCTTCTGACTTATCTAGATT+AGG | + | chr4_4:2328843-2328862 | Msa0663480:intron | 35.0% | |
| !! | GAACTCGAGATTTTGTTTAC+AGG | + | chr4_4:2328922-2328941 | Msa0663480:intron | 35.0% |
| GTGTACATCTAACTTGATCT+TGG | + | chr4_4:2329050-2329069 | Msa0663480:intron | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | + | chr4_4:2329052-2329071 | Msa0663480:intron | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | + | chr4_4:2329161-2329180 | Msa0663480:intron | 35.0% | |
| !! | CATTACCAGCCACTATTTTT+AGG | + | chr4_4:2329332-2329351 | Msa0663480:intron | 35.0% |
| ! | ACACACGATATTTGTTAACG+CGG | + | chr4_4:2329681-2329700 | Msa0663480:intron | 35.0% |
| TAATCTATAGTCGCAGAGAT+AGG | - | chr4_4:2329721-2329740 | None:intergenic | 35.0% | |
| !! | TCAAAGACTTGGTGGACATT+AGG | + | chr4_4:2327230-2327249 | Msa0663480:five_prime_UTR | 40.0% |
| CACATTGAGCAATATGGCAA+AGG | - | chr4_4:2327287-2327306 | None:intergenic | 40.0% | |
| GGAAGATAGATGCTTCTTGT+TGG | - | chr4_4:2327316-2327335 | None:intergenic | 40.0% | |
| ! | GATGAAGTGTTATCATAGGC+AGG | - | chr4_4:2327464-2327483 | None:intergenic | 40.0% |
| GATAACACTTCATCAGTCTC+TGG | + | chr4_4:2327470-2327489 | Msa0663480:CDS | 40.0% | |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | + | chr4_4:2327541-2327560 | Msa0663480:CDS | 40.0% |
| GTCAAACTTCTCTTGGTAAG+AGG | + | chr4_4:2327548-2327567 | Msa0663480:CDS | 40.0% | |
| GTAAGAGGTTACACTGTTAG+AGG | + | chr4_4:2327563-2327582 | Msa0663480:CDS | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | + | chr4_4:2327879-2327898 | Msa0663480:CDS | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | - | chr4_4:2328122-2328141 | None:intergenic | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | + | chr4_4:2328179-2328198 | Msa0663480:CDS | 40.0% | |
| ! | GTTCACTTCATCGATTGGAA+CGG | + | chr4_4:2328184-2328203 | Msa0663480:CDS | 40.0% |
| ATCGATTGGAACGGTCTATA+TGG | + | chr4_4:2328193-2328212 | Msa0663480:CDS | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | + | chr4_4:2328417-2328436 | Msa0663480:intron | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | + | chr4_4:2328428-2328447 | Msa0663480:CDS | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | + | chr4_4:2328564-2328583 | Msa0663480:CDS | 40.0% | |
| !! | AAGTTTTGGCAGCACCATTA+AGG | - | chr4_4:2328581-2328600 | None:intergenic | 40.0% |
| TGGGTACTCAGGAAAATACT+TGG | - | chr4_4:2328745-2328764 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | - | chr4_4:2328764-2328783 | None:intergenic | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | - | chr4_4:2328765-2328784 | None:intergenic | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | + | chr4_4:2329056-2329075 | Msa0663480:intron | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | + | chr4_4:2329165-2329184 | Msa0663480:intron | 40.0% | |
| !! | GTCAAAGTTGGTATACCTAG+AGG | - | chr4_4:2329191-2329210 | None:intergenic | 40.0% |
| CTTCTCCTAAAAATAGTGGC+TGG | - | chr4_4:2329340-2329359 | None:intergenic | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | - | chr4_4:2329369-2329388 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | - | chr4_4:2329373-2329392 | None:intergenic | 40.0% | |
| ! | CGATATTTGTTAACGCGGTT+TGG | + | chr4_4:2329686-2329705 | Msa0663480:intron | 40.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | + | chr4_4:2329980-2329999 | Msa0663480:CDS | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | + | chr4_4:2330038-2330057 | Msa0663480:CDS | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | - | chr4_4:2330080-2330099 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | - | chr4_4:2330081-2330100 | None:intergenic | 40.0% | |
| AACACTTCATCAGTCTCTGG+TGG | + | chr4_4:2327473-2327492 | Msa0663480:CDS | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | + | chr4_4:2327863-2327882 | Msa0663480:CDS | 45.0% | |
| GGCAACCATGAACAACAGAT+TGG | - | chr4_4:2327930-2327949 | None:intergenic | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | + | chr4_4:2327931-2327950 | Msa0663480:CDS | 45.0% | |
| !! | AGAGCATTGCAAGAACACCA+AGG | + | chr4_4:2328268-2328287 | Msa0663480:CDS | 45.0% |
| AGTGGCTGAACAATCAGCAT+GGG | + | chr4_4:2328446-2328465 | Msa0663480:CDS | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | - | chr4_4:2328512-2328531 | None:intergenic | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | - | chr4_4:2328513-2328532 | None:intergenic | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | - | chr4_4:2328572-2328591 | None:intergenic | 45.0% |
| TGTGAAACTGCTTTGCATCG+TGG | + | chr4_4:2328699-2328718 | Msa0663480:CDS | 45.0% | |
| CTTAGTTGAGAGAGGAGAGT+TGG | - | chr4_4:2328881-2328900 | None:intergenic | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | + | chr4_4:2329055-2329074 | Msa0663480:intron | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | + | chr4_4:2329057-2329076 | Msa0663480:intron | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | + | chr4_4:2329164-2329183 | Msa0663480:intron | 45.0% | |
| GTCGCAGAGATAGGTACAAT+TGG | - | chr4_4:2329712-2329731 | None:intergenic | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | - | chr4_4:2330071-2330090 | None:intergenic | 45.0% | |
| !! | AATATTAAGATTAATTAATT+AGG | + | chr4_4:2328369-2328388 | Msa0663480:intron | 5.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | - | chr4_4:2330215-2330234 | None:intergenic | 5.0% |
| GACCAAATCGTGTGTGTCAC+CGG | + | chr4_4:2327497-2327516 | Msa0663480:CDS | 50.0% | |
| !! | CTGGCGGGTTTATAGCTTCT+TGG | + | chr4_4:2327522-2327541 | Msa0663480:CDS | 50.0% |
| TTGCATACCTGGGTTTCGGA+CGG | - | chr4_4:2327591-2327610 | None:intergenic | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | + | chr4_4:2328110-2328129 | Msa0663480:CDS | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | + | chr4_4:2328445-2328464 | Msa0663480:CDS | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | + | chr4_4:2328497-2328516 | Msa0663480:CDS | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | + | chr4_4:2328504-2328523 | Msa0663480:CDS | 50.0% | |
| AACTGCTTTGCATCGTGGTG+AGG | + | chr4_4:2328704-2328723 | Msa0663480:CDS | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | - | chr4_4:2328756-2328775 | None:intergenic | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | - | chr4_4:2329169-2329188 | None:intergenic | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | - | chr4_4:2330067-2330086 | None:intergenic | 50.0% | |
| CACCGGTGACACACACGATT+TGG | - | chr4_4:2327502-2327521 | None:intergenic | 55.0% | |
| AGCTATAAACCCGCCAGCAC+CGG | - | chr4_4:2327519-2327538 | None:intergenic | 55.0% | |
| AGGCTGTGTGGAACACACCA+TGG | - | chr4_4:2327951-2327970 | None:intergenic | 55.0% | |
| CTTACAGGGTTGTCGGTGAC+AGG | - | chr4_4:2327976-2327995 | None:intergenic | 55.0% | |
| CTGTCACCGACAACCCTGTA+AGG | + | chr4_4:2327974-2327993 | Msa0663480:intron | 55.0% | |
| AACTTGATCTTGGGGTGGGG+TGG | + | chr4_4:2329060-2329079 | Msa0663480:intron | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | + | chr4_4:2329061-2329080 | Msa0663480:intron | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | + | chr4_4:2329173-2329192 | Msa0663480:intron | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | - | chr4_4:2330077-2330096 | None:intergenic | 55.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | + | chr4_4:2327503-2327522 | Msa0663480:CDS | 60.0% | |
| AGAGGAACCGTCCGAAACCC+AGG | + | chr4_4:2327581-2327600 | Msa0663480:CDS | 60.0% | |
| AGGGTTGTCGGTGACAGGAG+AGG | - | chr4_4:2327971-2327990 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | + | chr4_4:2327506-2327525 | Msa0663480:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | + | chr4_4:2327507-2327526 | Msa0663480:CDS | 65.0% |
| CGGTGACAGGAGAGGCTGTG+TGG | - | chr4_4:2327963-2327982 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2327173 | 2330271 | 2327173 | ID=Msa0663480;Name=Msa0663480 |
| chr4_4 | mRNA | 2327173 | 2330271 | 2327173 | ID=Msa0663480-mRNA-1;Parent=Msa0663480;Name=Msa0663480-mRNA-1;_AED=0.26;_eAED=0.26;_QI=285|1|1|1|0.8|0.66|6|148|336 |
| chr4_4 | exon | 2327173 | 2327602 | 2327173 | ID=Msa0663480-mRNA-1:exon:621;Parent=Msa0663480-mRNA-1 |
| chr4_4 | exon | 2327836 | 2327990 | 2327836 | ID=Msa0663480-mRNA-1:exon:622;Parent=Msa0663480-mRNA-1 |
| chr4_4 | exon | 2328104 | 2328289 | 2328104 | ID=Msa0663480-mRNA-1:exon:623;Parent=Msa0663480-mRNA-1 |
| chr4_4 | exon | 2328423 | 2328775 | 2328423 | ID=Msa0663480-mRNA-1:exon:624;Parent=Msa0663480-mRNA-1 |
| chr4_4 | exon | 2329929 | 2330164 | 2329929 | ID=Msa0663480-mRNA-1:exon:625;Parent=Msa0663480-mRNA-1 |
| chr4_4 | exon | 2330188 | 2330271 | 2330188 | ID=Msa0663480-mRNA-1:exon:626;Parent=Msa0663480-mRNA-1 |
| chr4_4 | five_prime_UTR | 2327173 | 2327457 | 2327173 | ID=Msa0663480-mRNA-1:five_prime_utr;Parent=Msa0663480-mRNA-1 |
| chr4_4 | CDS | 2327458 | 2327602 | 2327458 | ID=Msa0663480-mRNA-1:cds;Parent=Msa0663480-mRNA-1 |
| chr4_4 | CDS | 2327836 | 2327990 | 2327836 | ID=Msa0663480-mRNA-1:cds;Parent=Msa0663480-mRNA-1 |
| chr4_4 | CDS | 2328104 | 2328289 | 2328104 | ID=Msa0663480-mRNA-1:cds;Parent=Msa0663480-mRNA-1 |
| chr4_4 | CDS | 2328423 | 2328775 | 2328423 | ID=Msa0663480-mRNA-1:cds;Parent=Msa0663480-mRNA-1 |
| chr4_4 | CDS | 2329929 | 2330100 | 2329929 | ID=Msa0663480-mRNA-1:cds;Parent=Msa0663480-mRNA-1 |
| chr4_4 | three_prime_UTR | 2330101 | 2330164 | 2330101 | ID=Msa0663480-mRNA-1:three_prime_utr;Parent=Msa0663480-mRNA-1 |
| chr4_4 | three_prime_UTR | 2330188 | 2330271 | 2330188 | ID=Msa0663480-mRNA-1:three_prime_utr;Parent=Msa0663480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
