Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585330 | XP_003604238.1 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585330 | sp|A0A059TC02|CCR1_PETHY | 75.460 | 326 | 78 | 1 | 9 | 334 | 3 | 326 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0585330 | 0.819284 | 1.259000e-52 | -8.615850e-47 |
| Msa0045810 | Msa0585330 | 0.809097 | 2.239577e-50 | -8.615850e-47 |
| Msa0062190 | Msa0585330 | 0.819791 | 9.647294e-53 | -8.615850e-47 |
| Msa0072180 | Msa0585330 | 0.819560 | 1.089591e-52 | -8.615850e-47 |
| Msa0095890 | Msa0585330 | -0.815048 | 1.128841e-51 | -8.615850e-47 |
| Msa0106540 | Msa0585330 | 0.803463 | 3.444715e-49 | -8.615850e-47 |
| Msa0177320 | Msa0585330 | 0.803138 | 4.022213e-49 | -8.615850e-47 |
| Msa0204950 | Msa0585330 | 0.816549 | 5.222533e-52 | -8.615850e-47 |
| Msa0216340 | Msa0585330 | 0.817160 | 3.807998e-52 | -8.615850e-47 |
| Msa0378350 | Msa0585330 | 0.810444 | 1.149069e-50 | -8.615850e-47 |
| Msa0382020 | Msa0585330 | -0.800574 | 1.352217e-48 | -8.615850e-47 |
| Msa0389460 | Msa0585330 | 0.800394 | 1.471394e-48 | -8.615850e-47 |
| Msa0403740 | Msa0585330 | -0.815427 | 9.295838e-52 | -8.615850e-47 |
| Msa0431270 | Msa0585330 | -0.819156 | 1.346487e-52 | -8.615850e-47 |
| Msa0456450 | Msa0585330 | -0.816878 | 4.406853e-52 | -8.615850e-47 |
| Msa0457070 | Msa0585330 | -0.805569 | 1.252989e-49 | -8.615850e-47 |
| Msa0256540 | Msa0585330 | 0.805954 | 1.039988e-49 | -8.615850e-47 |
| Msa0281470 | Msa0585330 | 0.806486 | 8.035331e-50 | -8.615850e-47 |
| Msa0320600 | Msa0585330 | 0.801091 | 1.060252e-48 | -8.615850e-47 |
| Msa0326170 | Msa0585330 | -0.802377 | 5.776079e-49 | -8.615850e-47 |
| Msa0334320 | Msa0585330 | 0.831046 | 2.084029e-55 | -8.615850e-47 |
| Msa0364030 | Msa0585330 | -0.816692 | 4.850249e-52 | -8.615850e-47 |
| Msa0484210 | Msa0585330 | -0.807782 | 4.272916e-50 | -8.615850e-47 |
| Msa0529850 | Msa0585330 | 0.851843 | 6.814523e-61 | -8.615850e-47 |
| Msa0565700 | Msa0585330 | 0.816438 | 5.530605e-52 | -8.615850e-47 |
| Msa0576090 | Msa0585330 | -0.802195 | 6.296528e-49 | -8.615850e-47 |
| Msa0579070 | Msa0585330 | -0.829640 | 4.596990e-55 | -8.615850e-47 |
| Msa0581350 | Msa0585330 | 0.823008 | 1.745430e-53 | -8.615850e-47 |
| Msa0582270 | Msa0585330 | -0.800055 | 1.724569e-48 | -8.615850e-47 |
| Msa0585330 | Msa0585840 | 0.963390 | 5.007093e-122 | -8.615850e-47 |
| Msa0585330 | Msa0604220 | 0.800553 | 1.365352e-48 | -8.615850e-47 |
| Msa0585330 | Msa0610700 | -0.818742 | 1.672622e-52 | -8.615850e-47 |
| Msa0585330 | Msa0625780 | 0.963245 | 7.535491e-122 | -8.615850e-47 |
| Msa0585330 | Msa0663480 | 0.966943 | 1.334115e-126 | -8.615850e-47 |
| Msa0585330 | Msa0685060 | 0.829648 | 4.576858e-55 | -8.615850e-47 |
| Msa0585330 | Msa0707330 | 0.800573 | 1.353037e-48 | -8.615850e-47 |
| Msa0585330 | Msa0758810 | -0.804746 | 1.863401e-49 | -8.615850e-47 |
| Msa0585330 | Msa0772490 | 0.801495 | 8.763914e-49 | -8.615850e-47 |
| Msa0585330 | Msa0833200 | -0.819307 | 1.243899e-52 | -8.615850e-47 |
| Msa0585330 | Msa0838210 | 0.803672 | 3.117081e-49 | -8.615850e-47 |
| Msa0585330 | Msa0838620 | -0.816524 | 5.290822e-52 | -8.615850e-47 |
| Msa0585330 | Msa0853590 | 0.820835 | 5.559532e-53 | -8.615850e-47 |
| Msa0585330 | Msa0945030 | 0.810601 | 1.063003e-50 | -8.615850e-47 |
| Msa0585330 | Msa0967780 | 0.800332 | 1.514880e-48 | -8.615850e-47 |
| Msa0585330 | Msa1029830 | 0.812624 | 3.860204e-51 | -8.615850e-47 |
| Msa0585330 | Msa1068720 | 0.803026 | 4.242910e-49 | -8.615850e-47 |
| Msa0585330 | Msa1068950 | 0.833486 | 5.187027e-56 | -8.615850e-47 |
| Msa0585330 | Msa1088470 | 0.803694 | 3.084289e-49 | -8.615850e-47 |
| Msa0585330 | Msa1129200 | -0.822470 | 2.328046e-53 | -8.615850e-47 |
| Msa0585330 | Msa1155610 | 0.812985 | 3.217864e-51 | -8.615850e-47 |
| Msa0585330 | Msa1156720 | 0.850764 | 1.375011e-60 | -8.615850e-47 |
| Msa0585330 | Msa1160530 | 0.814727 | 1.329447e-51 | -8.615850e-47 |
| Msa0585330 | Msa1203650 | 0.806931 | 6.472429e-50 | -8.615850e-47 |
| Msa0585330 | Msa1205270 | -0.816508 | 5.333949e-52 | -8.615850e-47 |
| Msa0585330 | Msa1221270 | 0.833240 | 5.975910e-56 | -8.615850e-47 |
| Msa0585330 | Msa1265300 | 0.814138 | 1.794789e-51 | -8.615850e-47 |
| Msa0585330 | Msa1337350 | 0.823723 | 1.188001e-53 | -8.615850e-47 |
| Msa0585330 | Msa1342110 | -0.802768 | 4.797224e-49 | -8.615850e-47 |
| Msa0585330 | Msa1342360 | -0.816828 | 4.521658e-52 | -8.615850e-47 |
| Msa0585330 | Msa1368390 | 0.805486 | 1.304562e-49 | -8.615850e-47 |
| Msa0585330 | Msa1395430 | -0.810845 | 9.414175e-51 | -8.615850e-47 |
| Msa0585330 | Msa1405830 | 0.805937 | 1.048672e-49 | -8.615850e-47 |
| Msa0585330 | Msa1408390 | 0.806396 | 8.397079e-50 | -8.615850e-47 |
| Msa0585330 | Msa1412330 | -0.820730 | 5.878260e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585330 | MtrunA17_Chr4g0001321 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Msa0585330 | MtrunA17_Chr2g0333781 | 81.155 | 329 | 59 | 2 | 7 | 335 | 12 | 337 | 0.0 | 536 |
| Msa0585330 | MtrunA17_Chr3g0077221 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 2.18e-105 | 311 |
| Msa0585330 | MtrunA17_Chr3g0077231 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 5.34e-104 | 308 |
| Msa0585330 | MtrunA17_Chr4g0039311 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 9.67e-97 | 289 |
| Msa0585330 | MtrunA17_Chr5g0431311 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 1.92e-96 | 288 |
| Msa0585330 | MtrunA17_Chr8g0364051 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 1.19e-95 | 286 |
| Msa0585330 | MtrunA17_Chr4g0002661 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 2.29e-95 | 286 |
| Msa0585330 | MtrunA17_Chr4g0039321 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 6.94e-95 | 285 |
| Msa0585330 | MtrunA17_Chr8g0363831 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 3.67e-93 | 280 |
| Msa0585330 | MtrunA17_Chr4g0002961 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 9.93e-89 | 269 |
| Msa0585330 | MtrunA17_Chr3g0106111 | 42.089 | 316 | 176 | 3 | 15 | 324 | 3 | 317 | 1.29e-83 | 256 |
| Msa0585330 | MtrunA17_Chr5g0423551 | 41.456 | 316 | 177 | 5 | 18 | 326 | 5 | 319 | 3.17e-80 | 247 |
| Msa0585330 | MtrunA17_Chr1g0155411 | 41.411 | 326 | 173 | 11 | 15 | 327 | 6 | 326 | 1.47e-76 | 238 |
| Msa0585330 | MtrunA17_Chr2g0291541 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 2.82e-75 | 234 |
| Msa0585330 | MtrunA17_Chr2g0331211 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 8.01e-75 | 233 |
| Msa0585330 | MtrunA17_Chr1g0155431 | 41.159 | 328 | 171 | 12 | 15 | 327 | 6 | 326 | 1.86e-73 | 230 |
| Msa0585330 | MtrunA17_Chr4g0048961 | 35.385 | 325 | 189 | 9 | 18 | 324 | 15 | 336 | 4.16e-54 | 180 |
| Msa0585330 | MtrunA17_Chr7g0245741 | 33.333 | 327 | 201 | 9 | 13 | 326 | 4 | 326 | 4.32e-54 | 180 |
| Msa0585330 | MtrunA17_Chr7g0245671 | 33.837 | 331 | 197 | 12 | 13 | 326 | 4 | 329 | 1.26e-51 | 174 |
| Msa0585330 | MtrunA17_Chr7g0245641 | 34.242 | 330 | 197 | 11 | 13 | 326 | 41 | 366 | 3.93e-51 | 173 |
| Msa0585330 | MtrunA17_Chr4g0042101 | 34.328 | 335 | 190 | 10 | 18 | 327 | 25 | 354 | 1.28e-49 | 169 |
| Msa0585330 | MtrunA17_Chr7g0245731 | 33.028 | 327 | 202 | 10 | 13 | 326 | 54 | 376 | 1.37e-49 | 169 |
| Msa0585330 | MtrunA17_Chr7g0245691 | 32.335 | 334 | 199 | 12 | 13 | 326 | 4 | 330 | 5.51e-48 | 164 |
| Msa0585330 | MtrunA17_Chr4g0010991 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 1.91e-44 | 155 |
| Msa0585330 | MtrunA17_Chr7g0245631 | 32.622 | 328 | 202 | 12 | 13 | 326 | 4 | 326 | 3.53e-44 | 154 |
| Msa0585330 | MtrunA17_Chr6g0450211 | 34.333 | 300 | 178 | 8 | 13 | 299 | 51 | 344 | 3.22e-40 | 144 |
| Msa0585330 | MtrunA17_Chr7g0245711 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 5.69e-34 | 126 |
| Msa0585330 | MtrunA17_Chr5g0411071 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 9.71e-34 | 125 |
| Msa0585330 | MtrunA17_Chr2g0282001 | 27.219 | 338 | 217 | 10 | 17 | 328 | 7 | 341 | 1.86e-28 | 112 |
| Msa0585330 | MtrunA17_Chr7g0275521 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 2.22e-26 | 107 |
| Msa0585330 | MtrunA17_Chr2g0281991 | 27.874 | 348 | 202 | 13 | 17 | 328 | 8 | 342 | 2.90e-26 | 107 |
| Msa0585330 | MtrunA17_Chr2g0282011 | 26.393 | 341 | 208 | 11 | 17 | 324 | 8 | 338 | 2.02e-25 | 104 |
| Msa0585330 | MtrunA17_Chr3g0080551 | 41.284 | 109 | 61 | 3 | 107 | 212 | 17 | 125 | 1.08e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585330 | AT1G80820.1 | 73.968 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 3.08e-171 | 479 |
| Msa0585330 | AT1G15950.3 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0585330 | AT1G15950.1 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0585330 | AT1G15950.2 | 72.168 | 309 | 86 | 0 | 10 | 318 | 6 | 314 | 1.22e-159 | 450 |
| Msa0585330 | AT1G80820.2 | 73.308 | 266 | 71 | 0 | 15 | 280 | 6 | 271 | 4.14e-138 | 393 |
| Msa0585330 | AT1G15950.6 | 72.222 | 270 | 75 | 0 | 11 | 280 | 7 | 276 | 1.63e-136 | 389 |
| Msa0585330 | AT1G15950.4 | 71.533 | 274 | 78 | 0 | 11 | 284 | 7 | 280 | 1.90e-136 | 389 |
| Msa0585330 | AT1G15950.5 | 72.119 | 269 | 75 | 0 | 11 | 279 | 7 | 275 | 9.67e-136 | 387 |
| Msa0585330 | AT1G15950.7 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 7.38e-115 | 333 |
| Msa0585330 | AT5G19440.1 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 3.58e-105 | 311 |
| Msa0585330 | AT1G51410.1 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 3.35e-98 | 293 |
| Msa0585330 | AT5G58490.1 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 3.56e-87 | 265 |
| Msa0585330 | AT1G66800.1 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 1.08e-86 | 264 |
| Msa0585330 | AT1G09480.2 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 4.83e-86 | 262 |
| Msa0585330 | AT2G33590.1 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.26e-85 | 261 |
| Msa0585330 | AT1G09480.1 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 1.33e-85 | 263 |
| Msa0585330 | AT1G09510.1 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 3.26e-85 | 260 |
| Msa0585330 | AT1G09490.1 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 9.74e-85 | 259 |
| Msa0585330 | AT2G02400.1 | 41.509 | 318 | 177 | 4 | 15 | 326 | 4 | 318 | 9.50e-83 | 254 |
| Msa0585330 | AT1G09500.1 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 2.98e-81 | 250 |
| Msa0585330 | AT1G76470.1 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.19e-80 | 247 |
| Msa0585330 | AT4G35420.1 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 1.01e-79 | 246 |
| Msa0585330 | AT1G68540.1 | 40.379 | 317 | 179 | 5 | 19 | 326 | 6 | 321 | 7.25e-75 | 234 |
| Msa0585330 | AT1G09500.3 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 1.39e-74 | 231 |
| Msa0585330 | AT2G33600.1 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.24e-73 | 230 |
| Msa0585330 | AT1G25460.1 | 36.825 | 315 | 191 | 4 | 19 | 326 | 6 | 319 | 1.14e-66 | 213 |
| Msa0585330 | AT5G42800.1 | 39.264 | 326 | 182 | 10 | 15 | 328 | 6 | 327 | 7.31e-66 | 213 |
| Msa0585330 | AT1G09490.2 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 2.99e-64 | 205 |
| Msa0585330 | AT1G09500.2 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.45e-61 | 198 |
| Msa0585330 | AT2G45400.1 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 5.20e-53 | 179 |
| Msa0585330 | AT1G61720.1 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 6.98e-51 | 172 |
| Msa0585330 | AT2G45400.2 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 5.11e-49 | 167 |
| Msa0585330 | AT4G27250.1 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 1.35e-47 | 164 |
| Msa0585330 | AT4G27250.2 | 35.922 | 309 | 171 | 12 | 18 | 306 | 14 | 315 | 5.71e-47 | 162 |
| Msa0585330 | AT1G68540.2 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.35e-46 | 156 |
| Msa0585330 | AT2G23910.1 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 6.42e-44 | 153 |
| Msa0585330 | AT2G23910.2 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 7.42e-44 | 152 |
| Msa0585330 | AT2G23910.3 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 1.29e-43 | 151 |
| Msa0585330 | AT4G30470.1 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.24e-38 | 139 |
| Msa0585330 | AT2G45400.3 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.42e-35 | 131 |
| Msa0585330 | AT5G14700.1 | 33.213 | 277 | 161 | 8 | 12 | 270 | 50 | 320 | 1.74e-35 | 132 |
| Msa0585330 | AT2G23910.4 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.16e-34 | 128 |
| Msa0585330 | AT2G45400.4 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 5.41e-34 | 125 |
| Msa0585330 | AT5G14700.2 | 32.444 | 225 | 132 | 6 | 12 | 221 | 50 | 269 | 9.25e-27 | 107 |
| Msa0585330 | AT4G33360.2 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.11e-17 | 82.8 |
| Msa0585330 | AT4G33360.3 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 1.39e-17 | 82.8 |
| Msa0585330 | AT4G33360.1 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.81e-17 | 82.4 |
Find 89 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.148678 | 4_2:-5954038 | None:intergenic |
| TAAGAAGAAATAAATTAATT+TGG | 0.207846 | 4_2:-5953245 | None:intergenic |
| CTGGCGGGTTTATAGCTTCT+TGG | 0.222359 | 4_2:+5953343 | Msa0585330:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4_2:+5954384 | Msa0585330:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4_2:+5954324 | Msa0585330:CDS |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4_2:-5953662 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4_2:+5954539 | Msa0585330:CDS |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4_2:+5954296 | Msa0585330:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4_2:+5954013 | Msa0585330:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4_2:+5953667 | Msa0585330:CDS |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.330178 | 4_2:+5953362 | Msa0585330:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4_2:-5955768 | None:intergenic |
| TCTATCCAATCTGTTGTTCA+TGG | 0.337063 | 4_2:+5953743 | Msa0585330:CDS |
| CTATAATATAGTACTCTTGT+AGG | 0.339137 | 4_2:+5955935 | Msa0585330:three_prime_UTR |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4_2:+5954483 | Msa0585330:CDS |
| ATAATGTGATAACTCAAATA+TGG | 0.343716 | 4_2:-5953155 | None:intergenic |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4_2:-5953939 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4_2:+5955841 | Msa0585330:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4_2:-5954412 | None:intergenic |
| GAAAGAGGTTACACTGTTAG+AGG | 0.360156 | 4_2:+5953384 | Msa0585330:CDS |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4_2:-5953413 | None:intergenic |
| TCAAAGACTTGGTGGACATT+AGG | 0.371496 | 4_2:+5953051 | Msa0585330:five_prime_UTR |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4_2:+5954237 | Msa0585330:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.380185 | 4_2:-5954037 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4_2:-5955888 | None:intergenic |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4_2:+5954434 | Msa0585330:CDS |
| TTATTCTTTGCTATCTCCAT+TGG | 0.403938 | 4_2:+5953174 | Msa0585330:five_prime_UTR |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4_2:+5953324 | Msa0585330:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4_2:-5953320 | None:intergenic |
| AAGTGACACATTGAGCAATA+TGG | 0.424890 | 4_2:-5953111 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4_2:+5954238 | Msa0585330:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4_2:-5954348 | None:intergenic |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4_2:-5955831 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4_2:-5954330 | None:intergenic |
| TATAATATAGTACTCTTGTA+GGG | 0.442040 | 4_2:+5955936 | Msa0585330:three_prime_UTR |
| GGAAGATAGATGCTTCTTGT+TGG | 0.442890 | 4_2:-5953134 | None:intergenic |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4_2:-5954360 | None:intergenic |
| CTTACAGGGTTGTCGGTGAC+AGG | 0.466203 | 4_2:-5953794 | None:intergenic |
| GTCAAACTTCTCTTGGAAAG+AGG | 0.467940 | 4_2:+5953369 | Msa0585330:CDS |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4_2:+5953700 | Msa0585330:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4_2:+5955794 | Msa0585330:CDS |
| AAAATTCCTTACAGGGTTGT+CGG | 0.489586 | 4_2:-5953801 | None:intergenic |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4_2:+5953291 | Msa0585330:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4_2:-5953286 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4_2:+5953914 | Msa0585330:intron |
| AACACTTACTTGGTAGGAAG+TGG | 0.504048 | 4_2:-5954582 | None:intergenic |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4_2:+5954440 | Msa0585330:CDS |
| GTTGTGTTCACTTCATCGAT+TGG | 0.505971 | 4_2:+5953999 | Msa0585330:CDS |
| AGCTATAAACCCGCCAGCAC+CGG | 0.506486 | 4_2:-5953337 | None:intergenic |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4_2:+5955800 | Msa0585330:CDS |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4_2:+5953318 | Msa0585330:CDS |
| TTGTAGTTGATGAATCGTAT+TGG | 0.525667 | 4_2:+5954057 | Msa0585330:CDS |
| GGCAACCATGAACAACAGAT+TGG | 0.526807 | 4_2:-5953748 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4_2:-5955898 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4_2:+5953930 | Msa0585330:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4_2:+5953328 | Msa0585330:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4_2:-5953282 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4_2:+5953327 | Msa0585330:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4_2:+5955795 | Msa0585330:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4_2:-5954573 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4_2:+5953752 | Msa0585330:CDS |
| ATATGAAACACTTACTTGGT+AGG | 0.553678 | 4_2:-5954588 | None:intergenic |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4_2:-5955897 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4_2:+5953402 | Msa0585330:CDS |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4_2:+5955858 | Msa0585330:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4_2:+5954317 | Msa0585330:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4_2:-5954562 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4_2:-5955894 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4_2:+5953671 | Msa0585330:CDS |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4_2:-5954389 | None:intergenic |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4_2:-5953409 | None:intergenic |
| CACATTGAGCAATATGGCAA+AGG | 0.590539 | 4_2:-5953105 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4_2:+5954004 | Msa0585330:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4_2:+5954524 | Msa0585330:CDS |
| ATAATATAGTACTCTTGTAG+GGG | 0.610642 | 4_2:+5955937 | Msa0585330:three_prime_UTR |
| AGGGTTGTCGGTGACAGGAG+AGG | 0.622915 | 4_2:-5953789 | None:intergenic |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4_2:+5954265 | Msa0585330:CDS |
| CACTTGAAAAGAAAGACCAA+TGG | 0.637319 | 4_2:-5953190 | None:intergenic |
| AGGCTGTGTGGAACACACCA+TGG | 0.639078 | 4_2:-5953769 | None:intergenic |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4_2:+5954266 | Msa0585330:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4_2:+5953294 | Msa0585330:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4_2:-5955884 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4_2:+5953684 | Msa0585330:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.647055 | 4_2:-5954581 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4_2:-5954329 | None:intergenic |
| CGGTGACAGGAGAGGCTGTG+TGG | 0.679397 | 4_2:-5953781 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4_2:+5954519 | Msa0585330:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4_2:+5954088 | Msa0585330:CDS |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4_2:+5954248 | Msa0585330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGAAATAAATTAATT+TGG | - | chr4_2:5953248-5953267 | None:intergenic | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | + | chr4_2:5953542-5953561 | Msa0585330:intron | 10.0% |
| !!! | TTTTATTTGTATATAATTAG+AGG | + | chr4_2:5953637-5953656 | Msa0585330:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | + | chr4_2:5954624-5954643 | Msa0585330:intron | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | + | chr4_2:5955225-5955244 | Msa0585330:intron | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | + | chr4_2:5955288-5955307 | Msa0585330:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | + | chr4_2:5955289-5955308 | Msa0585330:intron | 10.0% |
| !! | AATTATTTATGATATATTCT+TGG | - | chr4_2:5955382-5955401 | None:intergenic | 10.0% |
| !! | TTATATAAAAATCAAAGACT+TGG | + | chr4_2:5953040-5953059 | Msa0585330:five_prime_UTR | 15.0% |
| !! | ATTTGGTATAAGAAAAAAAA+TGG | - | chr4_2:5953231-5953250 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | - | chr4_2:5953836-5953855 | None:intergenic | 15.0% |
| !! | ATTAAGATTAATTAATTAGG+TGG | + | chr4_2:5954192-5954211 | Msa0585330:intron | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | - | chr4_2:5955056-5955075 | None:intergenic | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | - | chr4_2:5955222-5955241 | None:intergenic | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | + | chr4_2:5955224-5955243 | Msa0585330:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | - | chr4_2:5955264-5955283 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | + | chr4_2:5955385-5955404 | Msa0585330:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | - | chr4_2:5955458-5955477 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | + | chr4_2:5955659-5955678 | Msa0585330:intron | 15.0% |
| !! | AAACAATAAAAAACACTATT+AGG | - | chr4_2:5956083-5956102 | None:intergenic | 15.0% |
| !!! | AATTGTTTTTTACTCGTTTT+TGG | - | chr4_2:5953022-5953041 | None:intergenic | 20.0% |
| !! | ATAATGTGATAACTCAAATA+TGG | - | chr4_2:5953158-5953177 | None:intergenic | 20.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | + | chr4_2:5953480-5953499 | Msa0585330:intron | 20.0% |
| !! | TTATAAAGAGTAACCTTATA+AGG | + | chr4_2:5953870-5953889 | Msa0585330:intron | 20.0% |
| !! | AATGATTAATTCACCTTATA+AGG | - | chr4_2:5953886-5953905 | None:intergenic | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | + | chr4_2:5953889-5953908 | Msa0585330:intron | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | + | chr4_2:5953902-5953921 | Msa0585330:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | + | chr4_2:5954296-5954315 | Msa0585330:CDS | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | - | chr4_2:5954819-5954838 | None:intergenic | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | + | chr4_2:5954835-5954854 | Msa0585330:intron | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | - | chr4_2:5955050-5955069 | None:intergenic | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | - | chr4_2:5955260-5955279 | None:intergenic | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | + | chr4_2:5955344-5955363 | Msa0585330:intron | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | + | chr4_2:5955345-5955364 | Msa0585330:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | + | chr4_2:5955658-5955677 | Msa0585330:intron | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | - | chr4_2:5955783-5955802 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | + | chr4_2:5955841-5955860 | Msa0585330:CDS | 20.0% |
| !! | TATAATATAGTACTCTTGTA+GGG | + | chr4_2:5955936-5955955 | Msa0585330:three_prime_UTR | 20.0% |
| !! | TAAAAAACACTATTAGGATT+AGG | - | chr4_2:5956077-5956096 | None:intergenic | 20.0% |
| ! | TATAAAAATCAAAGACTTGG+TGG | + | chr4_2:5953043-5953062 | Msa0585330:five_prime_UTR | 25.0% |
| !! | ACGTTTTCTCAATCTATAAA+AGG | + | chr4_2:5953079-5953098 | Msa0585330:five_prime_UTR | 25.0% |
| ! | TGGTATAAGAAAAAAAATGG+TGG | - | chr4_2:5953228-5953247 | None:intergenic | 25.0% |
| ! | AACAAAGAAAATTCCTTACA+GGG | - | chr4_2:5953811-5953830 | None:intergenic | 25.0% |
| ! | AAACAAAGAAAATTCCTTAC+AGG | - | chr4_2:5953812-5953831 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | + | chr4_2:5954226-5954245 | Msa0585330:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | - | chr4_2:5954351-5954370 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | - | chr4_2:5954363-5954382 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | + | chr4_2:5954434-5954453 | Msa0585330:CDS | 25.0% |
| ! | CTTATGACTTATCTAGATTA+GGG | + | chr4_2:5954664-5954683 | Msa0585330:intron | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | - | chr4_2:5954818-5954837 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | - | chr4_2:5954820-5954839 | None:intergenic | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | - | chr4_2:5954861-5954880 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | - | chr4_2:5954862-5954881 | None:intergenic | 25.0% |
| !!! | TCGAGTTTTTTTGTTTGTTA+GGG | - | chr4_2:5954957-5954976 | None:intergenic | 25.0% |
| !!! | ATCGAGTTTTTTTGTTTGTT+AGG | - | chr4_2:5954958-5954977 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | - | chr4_2:5955023-5955042 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | + | chr4_2:5955096-5955115 | Msa0585330:intron | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | - | chr4_2:5955374-5955393 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | - | chr4_2:5955413-5955432 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | - | chr4_2:5955573-5955592 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | + | chr4_2:5955574-5955593 | Msa0585330:intron | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | + | chr4_2:5955575-5955594 | Msa0585330:intron | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | - | chr4_2:5955702-5955721 | None:intergenic | 25.0% |
| ! | CTATAATATAGTACTCTTGT+AGG | + | chr4_2:5955935-5955954 | Msa0585330:three_prime_UTR | 25.0% |
| ! | ATAATATAGTACTCTTGTAG+GGG | + | chr4_2:5955937-5955956 | Msa0585330:three_prime_UTR | 25.0% |
| ! | TTATTCTTTGCTATCTCCAT+TGG | + | chr4_2:5953174-5953193 | Msa0585330:five_prime_UTR | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | - | chr4_2:5953665-5953684 | None:intergenic | 30.0% |
| GAATGATCACTTGAAAGAAT+TGG | + | chr4_2:5953667-5953686 | Msa0585330:CDS | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | + | chr4_2:5953914-5953933 | Msa0585330:intron | 30.0% | |
| !! | TTGTAGTTGATGAATCGTAT+TGG | + | chr4_2:5954057-5954076 | Msa0585330:CDS | 30.0% |
| GTAGTGAATTAATCAAACCT+TGG | - | chr4_2:5954108-5954127 | None:intergenic | 30.0% | |
| ! | TGTTGCATTCACATAAGTTT+TGG | - | chr4_2:5954415-5954434 | None:intergenic | 30.0% |
| TTATGTTCATGTTAAGGATG+TGG | + | chr4_2:5954440-5954459 | Msa0585330:CDS | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | - | chr4_2:5954591-5954610 | None:intergenic | 30.0% | |
| GACTATATGAAACACTTACT+TGG | - | chr4_2:5954595-5954614 | None:intergenic | 30.0% | |
| GCTTATGACTTATCTAGATT+AGG | + | chr4_2:5954663-5954682 | Msa0585330:intron | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | - | chr4_2:5954709-5954728 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | + | chr4_2:5954871-5954890 | Msa0585330:intron | 30.0% | |
| !! | TGACTTGTTCATTCTAAACA+GGG | - | chr4_2:5954917-5954936 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | - | chr4_2:5954918-5954937 | None:intergenic | 30.0% |
| ! | ATTTTACAGGTAAAAACGAG+TGG | + | chr4_2:5955109-5955128 | Msa0585330:intron | 30.0% |
| ATGACTTCTCCTAAAAATAG+TGG | - | chr4_2:5955164-5955183 | None:intergenic | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | + | chr4_2:5955636-5955655 | Msa0585330:intron | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | - | chr4_2:5955771-5955790 | None:intergenic | 30.0% | |
| AAATCAAAAGCTGAAAGACT+TGG | + | chr4_2:5955794-5955813 | Msa0585330:CDS | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | + | chr4_2:5955795-5955814 | Msa0585330:CDS | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | - | chr4_2:5955834-5955853 | None:intergenic | 30.0% | |
| AAGTGACACATTGAGCAATA+TGG | - | chr4_2:5953114-5953133 | None:intergenic | 35.0% | |
| CACTTGAAAAGAAAGACCAA+TGG | - | chr4_2:5953193-5953212 | None:intergenic | 35.0% | |
| ! | GACTGATGAAGTGTTATCAT+AGG | - | chr4_2:5953289-5953308 | None:intergenic | 35.0% |
| AAATTTGCATACCTGGGTTT+CGG | - | chr4_2:5953416-5953435 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | - | chr4_2:5953422-5953441 | None:intergenic | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | - | chr4_2:5953423-5953442 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | + | chr4_2:5953671-5953690 | Msa0585330:CDS | 35.0% | |
| TCTATCCAATCTGTTGTTCA+TGG | + | chr4_2:5953743-5953762 | Msa0585330:CDS | 35.0% | |
| AAAATTCCTTACAGGGTTGT+CGG | - | chr4_2:5953804-5953823 | None:intergenic | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | - | chr4_2:5954040-5954059 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | - | chr4_2:5954041-5954060 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | + | chr4_2:5954238-5954257 | Msa0585330:intron | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | + | chr4_2:5954483-5954502 | Msa0585330:CDS | 35.0% | |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | + | chr4_2:5954539-5954558 | Msa0585330:CDS | 35.0% |
| !! | GAACTCGAGATTTTGTTTAC+AGG | + | chr4_2:5954742-5954761 | Msa0585330:intron | 35.0% |
| GTGTACATCTAACTTGATCT+TGG | + | chr4_2:5954870-5954889 | Msa0585330:intron | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | + | chr4_2:5954872-5954891 | Msa0585330:intron | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | + | chr4_2:5954981-5955000 | Msa0585330:intron | 35.0% | |
| !! | CATTACCAGCCACTATTTTT+AGG | + | chr4_2:5955152-5955171 | Msa0585330:intron | 35.0% |
| ! | ACACACGATATTTGTTAACG+CGG | + | chr4_2:5955501-5955520 | Msa0585330:intron | 35.0% |
| TAATCTATAGTCGCAGAGAT+AGG | - | chr4_2:5955541-5955560 | None:intergenic | 35.0% | |
| !! | TCAAAGACTTGGTGGACATT+AGG | + | chr4_2:5953051-5953070 | Msa0585330:five_prime_UTR | 40.0% |
| CACATTGAGCAATATGGCAA+AGG | - | chr4_2:5953108-5953127 | None:intergenic | 40.0% | |
| GGAAGATAGATGCTTCTTGT+TGG | - | chr4_2:5953137-5953156 | None:intergenic | 40.0% | |
| ! | GATGAAGTGTTATCATAGGC+AGG | - | chr4_2:5953285-5953304 | None:intergenic | 40.0% |
| GATAACACTTCATCAGTCTC+TGG | + | chr4_2:5953291-5953310 | Msa0585330:CDS | 40.0% | |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | + | chr4_2:5953362-5953381 | Msa0585330:CDS | 40.0% |
| GTCAAACTTCTCTTGGAAAG+AGG | + | chr4_2:5953369-5953388 | Msa0585330:CDS | 40.0% | |
| GAAAGAGGTTACACTGTTAG+AGG | + | chr4_2:5953384-5953403 | Msa0585330:CDS | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | + | chr4_2:5953700-5953719 | Msa0585330:CDS | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | - | chr4_2:5953942-5953961 | None:intergenic | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | + | chr4_2:5953999-5954018 | Msa0585330:CDS | 40.0% | |
| ! | GTTCACTTCATCGATTGGAA+CGG | + | chr4_2:5954004-5954023 | Msa0585330:CDS | 40.0% |
| ATCGATTGGAACGGTCTATA+TGG | + | chr4_2:5954013-5954032 | Msa0585330:CDS | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | + | chr4_2:5954237-5954256 | Msa0585330:intron | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | + | chr4_2:5954248-5954267 | Msa0585330:CDS | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | + | chr4_2:5954384-5954403 | Msa0585330:CDS | 40.0% | |
| !! | AAGTTTTGGCAGCACCATTA+AGG | - | chr4_2:5954401-5954420 | None:intergenic | 40.0% |
| TGGGTACTCAGGAAAATACT+TGG | - | chr4_2:5954565-5954584 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | - | chr4_2:5954584-5954603 | None:intergenic | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | - | chr4_2:5954585-5954604 | None:intergenic | 40.0% | |
| CTTAGTTGAGAGAGGAGAAT+TGG | - | chr4_2:5954701-5954720 | None:intergenic | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | + | chr4_2:5954876-5954895 | Msa0585330:intron | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | + | chr4_2:5954985-5955004 | Msa0585330:intron | 40.0% | |
| !! | GTCAAAGTTGGTATACCTAG+AGG | - | chr4_2:5955011-5955030 | None:intergenic | 40.0% |
| CTTCTCCTAAAAATAGTGGC+TGG | - | chr4_2:5955160-5955179 | None:intergenic | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | - | chr4_2:5955189-5955208 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | - | chr4_2:5955193-5955212 | None:intergenic | 40.0% | |
| ! | CGATATTTGTTAACGCGGTT+TGG | + | chr4_2:5955506-5955525 | Msa0585330:intron | 40.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | + | chr4_2:5955800-5955819 | Msa0585330:CDS | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | + | chr4_2:5955858-5955877 | Msa0585330:CDS | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | - | chr4_2:5955900-5955919 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | - | chr4_2:5955901-5955920 | None:intergenic | 40.0% | |
| AACACTTCATCAGTCTCTGG+TGG | + | chr4_2:5953294-5953313 | Msa0585330:CDS | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | + | chr4_2:5953684-5953703 | Msa0585330:CDS | 45.0% | |
| GGCAACCATGAACAACAGAT+TGG | - | chr4_2:5953751-5953770 | None:intergenic | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | + | chr4_2:5953752-5953771 | Msa0585330:CDS | 45.0% | |
| !! | AGAGCATTGCAAGAACACCA+AGG | + | chr4_2:5954088-5954107 | Msa0585330:CDS | 45.0% |
| AGTGGCTGAACAATCAGCAT+GGG | + | chr4_2:5954266-5954285 | Msa0585330:CDS | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | - | chr4_2:5954332-5954351 | None:intergenic | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | - | chr4_2:5954333-5954352 | None:intergenic | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | - | chr4_2:5954392-5954411 | None:intergenic | 45.0% |
| TGTGAAACTGCTTTGCATCG+TGG | + | chr4_2:5954519-5954538 | Msa0585330:CDS | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | + | chr4_2:5954875-5954894 | Msa0585330:intron | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | + | chr4_2:5954877-5954896 | Msa0585330:intron | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | + | chr4_2:5954984-5955003 | Msa0585330:intron | 45.0% | |
| GTCGCAGAGATAGGTACAAT+TGG | - | chr4_2:5955532-5955551 | None:intergenic | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | - | chr4_2:5955891-5955910 | None:intergenic | 45.0% | |
| !! | AATATTAAGATTAATTAATT+AGG | + | chr4_2:5954189-5954208 | Msa0585330:intron | 5.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | - | chr4_2:5956021-5956040 | None:intergenic | 5.0% |
| GACCAAATCGTGTGTGTCAC+CGG | + | chr4_2:5953318-5953337 | Msa0585330:CDS | 50.0% | |
| !! | CTGGCGGGTTTATAGCTTCT+TGG | + | chr4_2:5953343-5953362 | Msa0585330:CDS | 50.0% |
| TTGCATACCTGGGTTTCGGA+CGG | - | chr4_2:5953412-5953431 | None:intergenic | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | + | chr4_2:5953930-5953949 | Msa0585330:CDS | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | + | chr4_2:5954265-5954284 | Msa0585330:CDS | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | + | chr4_2:5954317-5954336 | Msa0585330:CDS | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | + | chr4_2:5954324-5954343 | Msa0585330:CDS | 50.0% | |
| AACTGCTTTGCATCGTGGTG+AGG | + | chr4_2:5954524-5954543 | Msa0585330:CDS | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | - | chr4_2:5954576-5954595 | None:intergenic | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | - | chr4_2:5954989-5955008 | None:intergenic | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | - | chr4_2:5955887-5955906 | None:intergenic | 50.0% | |
| CACCGGTGACACACACGATT+TGG | - | chr4_2:5953323-5953342 | None:intergenic | 55.0% | |
| AGCTATAAACCCGCCAGCAC+CGG | - | chr4_2:5953340-5953359 | None:intergenic | 55.0% | |
| AGGCTGTGTGGAACACACCA+TGG | - | chr4_2:5953772-5953791 | None:intergenic | 55.0% | |
| CTTACAGGGTTGTCGGTGAC+AGG | - | chr4_2:5953797-5953816 | None:intergenic | 55.0% | |
| CTGTCACCGACAACCCTGTA+AGG | + | chr4_2:5953795-5953814 | Msa0585330:intron | 55.0% | |
| AACTTGATCTTGGGGTGGGG+TGG | + | chr4_2:5954880-5954899 | Msa0585330:intron | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | + | chr4_2:5954881-5954900 | Msa0585330:intron | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | + | chr4_2:5954993-5955012 | Msa0585330:intron | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | - | chr4_2:5955897-5955916 | None:intergenic | 55.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | + | chr4_2:5953324-5953343 | Msa0585330:CDS | 60.0% | |
| AGAGGAACCGTCCGAAACCC+AGG | + | chr4_2:5953402-5953421 | Msa0585330:CDS | 60.0% | |
| AGGGTTGTCGGTGACAGGAG+AGG | - | chr4_2:5953792-5953811 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | + | chr4_2:5953327-5953346 | Msa0585330:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | + | chr4_2:5953328-5953347 | Msa0585330:CDS | 65.0% |
| CGGTGACAGGAGAGGCTGTG+TGG | - | chr4_2:5953784-5953803 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 5952994 | 5956145 | 5952994 | ID=Msa0585330;Name=Msa0585330 |
| chr4_2 | mRNA | 5952994 | 5956145 | 5952994 | ID=Msa0585330-mRNA-1;Parent=Msa0585330;Name=Msa0585330-mRNA-1;_AED=0.24;_eAED=0.24;_QI=285|1|1|1|1|1|5|225|336 |
| chr4_2 | exon | 5952994 | 5953423 | 5952994 | ID=Msa0585330-mRNA-1:exon:1466;Parent=Msa0585330-mRNA-1 |
| chr4_2 | exon | 5953657 | 5953811 | 5953657 | ID=Msa0585330-mRNA-1:exon:1467;Parent=Msa0585330-mRNA-1 |
| chr4_2 | exon | 5953924 | 5954109 | 5953924 | ID=Msa0585330-mRNA-1:exon:1468;Parent=Msa0585330-mRNA-1 |
| chr4_2 | exon | 5954243 | 5954595 | 5954243 | ID=Msa0585330-mRNA-1:exon:1469;Parent=Msa0585330-mRNA-1 |
| chr4_2 | exon | 5955749 | 5956145 | 5955749 | ID=Msa0585330-mRNA-1:exon:1470;Parent=Msa0585330-mRNA-1 |
| chr4_2 | five_prime_UTR | 5952994 | 5953278 | 5952994 | ID=Msa0585330-mRNA-1:five_prime_utr;Parent=Msa0585330-mRNA-1 |
| chr4_2 | CDS | 5953279 | 5953423 | 5953279 | ID=Msa0585330-mRNA-1:cds;Parent=Msa0585330-mRNA-1 |
| chr4_2 | CDS | 5953657 | 5953811 | 5953657 | ID=Msa0585330-mRNA-1:cds;Parent=Msa0585330-mRNA-1 |
| chr4_2 | CDS | 5953924 | 5954109 | 5953924 | ID=Msa0585330-mRNA-1:cds;Parent=Msa0585330-mRNA-1 |
| chr4_2 | CDS | 5954243 | 5954595 | 5954243 | ID=Msa0585330-mRNA-1:cds;Parent=Msa0585330-mRNA-1 |
| chr4_2 | CDS | 5955749 | 5955920 | 5955749 | ID=Msa0585330-mRNA-1:cds;Parent=Msa0585330-mRNA-1 |
| chr4_2 | three_prime_UTR | 5955921 | 5956145 | 5955921 | ID=Msa0585330-mRNA-1:three_prime_utr;Parent=Msa0585330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
