Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530700 | XP_013454666.1 | 86.869 | 198 | 1 | 2 | 1 | 196 | 1 | 175 | 1.44e-116 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530700 | sp|Q9XI31|GLYI4_ARATH | 66.667 | 195 | 42 | 1 | 1 | 195 | 1 | 172 | 1.63e-91 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530700 | A0A072UG80 | 86.869 | 198 | 1 | 2 | 1 | 196 | 1 | 175 | 6.89e-117 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0530700 | Msa0587530 | 0.891705 | 3.112940e-74 | -8.615850e-47 |
| Msa0530700 | Msa0627770 | 0.884263 | 2.226696e-71 | -8.615850e-47 |
| Msa0530700 | Msa0665510 | 0.876169 | 1.728207e-68 | -8.615850e-47 |
| Msa0530700 | Msa1298100 | 0.820640 | 6.163472e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530700 | MtrunA17_Chr4g0003581 | 86.869 | 198 | 1 | 2 | 1 | 196 | 1 | 175 | 1.33e-120 | 338 |
| Msa0530700 | MtrunA17_Chr2g0332851 | 65.816 | 196 | 40 | 2 | 1 | 196 | 1 | 169 | 1.30e-85 | 249 |
| Msa0530700 | MtrunA17_Chr2g0332841 | 62.434 | 189 | 47 | 2 | 1 | 188 | 1 | 166 | 1.07e-77 | 229 |
| Msa0530700 | MtrunA17_Chr4g0063501 | 57.714 | 175 | 50 | 2 | 5 | 178 | 1 | 152 | 7.44e-71 | 212 |
| Msa0530700 | MtrunA17_Chr1g0212241 | 59.036 | 166 | 44 | 2 | 24 | 188 | 1 | 143 | 3.14e-61 | 187 |
| Msa0530700 | MtrunA17_Chr2g0277151 | 53.459 | 159 | 51 | 1 | 8 | 166 | 2 | 137 | 3.97e-56 | 175 |
| Msa0530700 | MtrunA17_Chr5g0405171 | 47.093 | 172 | 60 | 3 | 6 | 171 | 22 | 168 | 1.29e-50 | 162 |
| Msa0530700 | MtrunA17_Chr8g0372141 | 46.626 | 163 | 60 | 2 | 8 | 166 | 12 | 151 | 1.38e-49 | 159 |
| Msa0530700 | MtrunA17_Chr4g0020201 | 41.837 | 196 | 83 | 5 | 2 | 191 | 29 | 199 | 8.29e-48 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530700 | AT1G15380.2 | 66.667 | 195 | 42 | 1 | 1 | 195 | 1 | 172 | 1.66e-92 | 268 |
| Msa0530700 | AT1G15380.1 | 66.667 | 195 | 42 | 1 | 1 | 195 | 1 | 172 | 1.66e-92 | 268 |
| Msa0530700 | AT1G80160.1 | 69.792 | 192 | 32 | 2 | 1 | 192 | 1 | 166 | 4.00e-92 | 266 |
| Msa0530700 | AT1G80160.3 | 69.792 | 192 | 32 | 2 | 1 | 192 | 42 | 207 | 6.21e-92 | 268 |
| Msa0530700 | AT1G80160.2 | 65.000 | 140 | 23 | 2 | 53 | 192 | 27 | 140 | 3.05e-55 | 172 |
| Msa0530700 | AT2G28420.1 | 46.497 | 157 | 59 | 3 | 11 | 165 | 18 | 151 | 4.40e-48 | 155 |
Find 53 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAACATCTTTGTTATT+TGG | 0.109561 | 4_1:+4761698 | Msa0530700:five_prime_UTR |
| TTAATAAAGTAATGAATTAT+TGG | 0.150400 | 4_1:+4764063 | Msa0530700:three_prime_UTR |
| AAAGAACCAGGCCTTCTTAT+TGG | 0.200598 | 4_1:-4761896 | None:intergenic |
| TCGAAACAGAGTGACTTATT+TGG | 0.221146 | 4_1:+4764100 | Msa0530700:three_prime_UTR |
| TTCTTCCTTGGTAACGTCTC+TGG | 0.223323 | 4_1:-4762817 | None:intergenic |
| GACCTAATTTGCAGGCTATT+TGG | 0.231443 | 4_1:+4762757 | Msa0530700:intron |
| AATTTCTACCAGAATGTTCT+TGG | 0.254660 | 4_1:+4761866 | Msa0530700:CDS |
| CTTATTTGGACTGCTATTAT+TGG | 0.287923 | 4_1:+4764114 | Msa0530700:three_prime_UTR |
| TTATTAATAATTAACATATA+AGG | 0.298592 | 4_1:-4764047 | None:intergenic |
| AAGAACCAGGCCTTCTTATT+GGG | 0.313845 | 4_1:-4761895 | None:intergenic |
| TGATGTGTAGTGTGAGAGTA+TGG | 0.316945 | 4_1:+4763652 | Msa0530700:intron |
| GGGTTTATTTCTTTCTTCCT+TGG | 0.319643 | 4_1:-4762829 | None:intergenic |
| AAGATATGTGATTATCCTTT+GGG | 0.325525 | 4_1:-4762849 | None:intergenic |
| TTGTTAACCATTCGATTCTC+AGG | 0.349832 | 4_1:+4763470 | Msa0530700:CDS |
| AAAGATATGTGATTATCCTT+TGG | 0.352158 | 4_1:-4762850 | None:intergenic |
| AGGCTATTTGGCTATGGTAT+TGG | 0.365518 | 4_1:+4762769 | Msa0530700:intron |
| ATCTCAATCATGAAACCATC+TGG | 0.372159 | 4_1:-4763773 | None:intergenic |
| CTTGCTACCTCACCAACTAA+TGG | 0.386113 | 4_1:-4763824 | None:intergenic |
| GGAAGAAACCAAGAACATTC+TGG | 0.404879 | 4_1:-4761874 | None:intergenic |
| GGATAATCACATATCTTTCC+AGG | 0.407468 | 4_1:+4762855 | Msa0530700:CDS |
| GGAAAAGAGCTCTGGTAATT+CGG | 0.412673 | 4_1:+4763492 | Msa0530700:CDS |
| CTTCCTGTGATTCCATTAGT+TGG | 0.419159 | 4_1:+4763812 | Msa0530700:CDS |
| TCTTCCTTGGTAACGTCTCT+GGG | 0.440829 | 4_1:-4762816 | None:intergenic |
| AAACATCTTTGTGTGGGAAA+AGG | 0.452378 | 4_1:+4763939 | Msa0530700:three_prime_UTR |
| CTATCATAGTTCAATTGGGT+TGG | 0.459350 | 4_1:+4761734 | Msa0530700:five_prime_UTR |
| CGATTCACAAGTTATTGTTA+AGG | 0.463839 | 4_1:-4761632 | None:intergenic |
| TTGGTTTCTTCCCAATAAGA+AGG | 0.469291 | 4_1:+4761885 | Msa0530700:CDS |
| ATTTGCAGGCTATTTGGCTA+TGG | 0.473328 | 4_1:+4762763 | Msa0530700:intron |
| TTCTTCCCAATAAGAAGGCC+TGG | 0.475428 | 4_1:+4761890 | Msa0530700:CDS |
| AGAAGAAGGTGGGATTGAAG+TGG | 0.480570 | 4_1:+4763730 | Msa0530700:CDS |
| TGTTAAGGAAGAGAAGAAAG+AGG | 0.482716 | 4_1:-4761617 | None:intergenic |
| GATGTGTAGTGTGAGAGTAT+GGG | 0.496468 | 4_1:+4763653 | Msa0530700:intron |
| TCATGAAACCATCTGGGTCA+TGG | 0.503506 | 4_1:-4763766 | None:intergenic |
| ATTCTCAGGGAAAAGAGCTC+TGG | 0.513593 | 4_1:+4763484 | Msa0530700:CDS |
| TGAGAAAATGAAGGAAAGTG+TGG | 0.520447 | 4_1:+4761775 | Msa0530700:exon |
| ATGTGTAGTGTGAGAGTATG+GGG | 0.538331 | 4_1:+4763654 | Msa0530700:intron |
| TCACCAACTAATGGAATCAC+AGG | 0.547180 | 4_1:-4763815 | None:intergenic |
| TGTGATTCCATTAGTTGGTG+AGG | 0.549148 | 4_1:+4763817 | Msa0530700:CDS |
| TGTTAACCATTCGATTCTCA+GGG | 0.568057 | 4_1:+4763471 | Msa0530700:CDS |
| GAGAAAATGAAGGAAAGTGT+GGG | 0.578884 | 4_1:+4761776 | Msa0530700:exon |
| GTTCGAGCAAGAGTAGAAGA+AGG | 0.588124 | 4_1:+4763716 | Msa0530700:CDS |
| CGAGCAAGAGTAGAAGAAGG+TGG | 0.590949 | 4_1:+4763719 | Msa0530700:CDS |
| CCATCAAAATCAAAAGAACC+AGG | 0.594472 | 4_1:-4761908 | None:intergenic |
| TAAGTCACTCTGTTTCGAGT+AGG | 0.607940 | 4_1:-4764095 | None:intergenic |
| GAGCAAGAGTAGAAGAAGGT+GGG | 0.610637 | 4_1:+4763720 | Msa0530700:CDS |
| TCTCAATCATGAAACCATCT+GGG | 0.612866 | 4_1:-4763772 | None:intergenic |
| GAAGAAAGAAATAAACCCAA+AGG | 0.615464 | 4_1:+4762834 | Msa0530700:CDS |
| AATGAATAGAAGATTTGTCA+CGG | 0.633905 | 4_1:-4761581 | None:intergenic |
| AGAACCCAGAGACGTTACCA+AGG | 0.641794 | 4_1:+4762812 | Msa0530700:CDS |
| TAATTCGGAGTTCGATCTCG+AGG | 0.663377 | 4_1:+4763507 | Msa0530700:CDS |
| TGTGACCAAACATCTTTGTG+TGG | 0.679161 | 4_1:+4763932 | Msa0530700:three_prime_UTR |
| GTGACCAAACATCTTTGTGT+GGG | 0.690684 | 4_1:+4763933 | Msa0530700:three_prime_UTR |
| TGTGTAGTGTGAGAGTATGG+GGG | 0.704755 | 4_1:+4763655 | Msa0530700:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGAAAATTAAATTAAAAATA+GGG | - | chr4_1:4762128-4762147 | None:intergenic | 10.0% |
| !! | TAAAAATTCATATTAAATTC+AGG | + | chr4_1:4762266-4762285 | Msa0530700:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr4_1:4762328-4762347 | Msa0530700:intron | 10.0% |
| !! | AAAAAAAATTGAAAAATCTA+GGG | - | chr4_1:4762516-4762535 | None:intergenic | 10.0% |
| !!! | TTCAATTTTTTTTGTTAAAA+CGG | + | chr4_1:4762523-4762542 | Msa0530700:intron | 10.0% |
| !! | AATAATAATAATACTAACAA+TGG | - | chr4_1:4762549-4762568 | None:intergenic | 10.0% |
| !!! | TCTATATTTAGTTTTAAATT+TGG | - | chr4_1:4763039-4763058 | None:intergenic | 10.0% |
| !! | TTAATAAAGTAATGAATTAT+TGG | + | chr4_1:4764063-4764082 | Msa0530700:three_prime_UTR | 10.0% |
| !!! | AATTTAACATCTTTGTTATT+TGG | + | chr4_1:4761698-4761717 | Msa0530700:five_prime_UTR | 15.0% |
| !!! | TAAGAATTGTATTAGATTTT+TGG | + | chr4_1:4761993-4762012 | Msa0530700:intron | 15.0% |
| !!! | AAGAATTGTATTAGATTTTT+GGG | + | chr4_1:4761994-4762013 | Msa0530700:intron | 15.0% |
| !!! | AGTTGATTAAAATTTTTAGA+GGG | - | chr4_1:4762068-4762087 | None:intergenic | 15.0% |
| !!! | AAGTTGATTAAAATTTTTAG+AGG | - | chr4_1:4762069-4762088 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr4_1:4762413-4762432 | None:intergenic | 15.0% |
| !! | GCGAAAATTAAATTAAAAAT+AGG | - | chr4_1:4762129-4762148 | None:intergenic | 15.0% |
| !!! | AAAAAATTCTAATTTGCTTT+GGG | - | chr4_1:4762202-4762221 | None:intergenic | 15.0% |
| !!! | TAAAAAATTCTAATTTGCTT+TGG | - | chr4_1:4762203-4762222 | None:intergenic | 15.0% |
| !!! | ATATGATTTTACTTTAAAAG+AGG | + | chr4_1:4762381-4762400 | Msa0530700:intron | 15.0% |
| !!! | TATGATTTTACTTTAAAAGA+GGG | + | chr4_1:4762382-4762401 | Msa0530700:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr4_1:4762413-4762432 | Msa0530700:intron | 15.0% |
| !! | CAAAAAAAATTGAAAAATCT+AGG | - | chr4_1:4762517-4762536 | None:intergenic | 15.0% |
| !!! | AGTAATATTTTTTTTTGTCA+AGG | - | chr4_1:4763374-4763393 | None:intergenic | 15.0% |
| !!! | GATGTTAAATTTTAGAGAAA+GGG | - | chr4_1:4761689-4761708 | None:intergenic | 20.0% |
| !!! | AGATGTTAAATTTTAGAGAA+AGG | - | chr4_1:4761690-4761709 | None:intergenic | 20.0% |
| !!! | TTTTTCTATCATAGTTCAAT+TGG | + | chr4_1:4761729-4761748 | Msa0530700:five_prime_UTR | 20.0% |
| !!! | TTTTCTATCATAGTTCAATT+GGG | + | chr4_1:4761730-4761749 | Msa0530700:five_prime_UTR | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr4_1:4762037-4762056 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr4_1:4762412-4762431 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr4_1:4762101-4762120 | Msa0530700:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr4_1:4762101-4762120 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr4_1:4762412-4762431 | Msa0530700:intron | 20.0% |
| !!! | TGAAAATTGATTTTTGTATG+TGG | + | chr4_1:4762733-4762752 | Msa0530700:intron | 20.0% |
| !!! | ATTTTGAAACGTAATCAATA+AGG | - | chr4_1:4762903-4762922 | None:intergenic | 20.0% |
| !! | ATTGATTACGTTTCAAAATT+TGG | + | chr4_1:4762904-4762923 | Msa0530700:intron | 20.0% |
| !!! | GAGTGTTTTAGTTTTAAATT+TGG | - | chr4_1:4763067-4763086 | None:intergenic | 20.0% |
| !! | ATCCAACTTTCTTAATTTAA+TGG | + | chr4_1:4763394-4763413 | Msa0530700:intron | 20.0% |
| !! | TACCATTAAATTAAGAAAGT+TGG | - | chr4_1:4763399-4763418 | None:intergenic | 20.0% |
| ! | AATGAATAGAAGATTTGTCA+CGG | - | chr4_1:4761584-4761603 | None:intergenic | 25.0% |
| !! | GAATTTTCTTGAGAAAATGA+AGG | + | chr4_1:4761766-4761785 | Msa0530700:exon | 25.0% |
| !!! | AGATATGATTCACTGATTTT+AGG | - | chr4_1:4761814-4761833 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr4_1:4762038-4762057 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4_1:4762441-4762460 | Msa0530700:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr4_1:4762442-4762461 | Msa0530700:intron | 25.0% |
| ! | GAAAAGTTGACATATTTACA+GGG | + | chr4_1:4762473-4762492 | Msa0530700:intron | 25.0% |
| ! | AAATTTAATAAACCTTTGCC+AGG | + | chr4_1:4762701-4762720 | Msa0530700:intron | 25.0% |
| !! | CAATTTTCATTTAGAAAACC+TGG | - | chr4_1:4762722-4762741 | None:intergenic | 25.0% |
| ! | AAGATATGTGATTATCCTTT+GGG | - | chr4_1:4762852-4762871 | None:intergenic | 25.0% |
| ! | AAAGATATGTGATTATCCTT+TGG | - | chr4_1:4762853-4762872 | None:intergenic | 25.0% |
| !! | CGTTTATGTTATCCTTTTTA+AGG | + | chr4_1:4763105-4763124 | Msa0530700:intron | 25.0% |
| ! | GTGCAAAAAATTACATGATT+CGG | - | chr4_1:4763195-4763214 | None:intergenic | 25.0% |
| ! | TGTATAATATATGCAGAAGT+CGG | + | chr4_1:4763293-4763312 | Msa0530700:intron | 25.0% |
| !!! | CTTTCAAATAGTTTTTCAGT+TGG | + | chr4_1:4763579-4763598 | Msa0530700:intron | 25.0% |
| ! | TTTGTGATTGAACTTTGAAT+TGG | + | chr4_1:4763628-4763647 | Msa0530700:intron | 25.0% |
| CGATTCACAAGTTATTGTTA+AGG | - | chr4_1:4761635-4761654 | None:intergenic | 30.0% | |
| AATTTCTACCAGAATGTTCT+TGG | + | chr4_1:4761866-4761885 | Msa0530700:CDS | 30.0% | |
| !!! | CTGGTTCTTTTGATTTTGAT+GGG | + | chr4_1:4761909-4761928 | Msa0530700:CDS | 30.0% |
| !!! | TGGTTCTTTTGATTTTGATG+GGG | + | chr4_1:4761910-4761929 | Msa0530700:CDS | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr4_1:4762428-4762447 | Msa0530700:intron | 30.0% | |
| CGAAAAGTTGACATATTTAC+AGG | + | chr4_1:4762472-4762491 | Msa0530700:intron | 30.0% | |
| GAAGAAAGAAATAAACCCAA+AGG | + | chr4_1:4762834-4762853 | Msa0530700:CDS | 30.0% | |
| !!! | TTTTTCTATGCGTCACTTTT+AGG | - | chr4_1:4763015-4763034 | None:intergenic | 30.0% |
| !! | TCCTTTTTAAGGATATGCAA+TGG | + | chr4_1:4763116-4763135 | Msa0530700:intron | 30.0% |
| TTTAAGGATCTTATCCTCTA+AGG | + | chr4_1:4763141-4763160 | Msa0530700:intron | 30.0% | |
| !!! | ATGTAATTTTTTGCACTGCA+CGG | + | chr4_1:4763199-4763218 | Msa0530700:intron | 30.0% |
| GTATAATATATGCAGAAGTC+GGG | + | chr4_1:4763294-4763313 | Msa0530700:intron | 30.0% | |
| !! | CATTTTAAATGTGAGGTGTT+TGG | - | chr4_1:4763328-4763347 | None:intergenic | 30.0% |
| ! | TTTTTGTCAAGGAAACTAAG+TGG | - | chr4_1:4763363-4763382 | None:intergenic | 30.0% |
| TGAGAAAAAGCTGAAAGAAA+TGG | + | chr4_1:4763682-4763701 | Msa0530700:CDS | 30.0% | |
| CTTATTTGGACTGCTATTAT+TGG | + | chr4_1:4764114-4764133 | Msa0530700:three_prime_UTR | 30.0% | |
| TGTTAAGGAAGAGAAGAAAG+AGG | - | chr4_1:4761620-4761639 | None:intergenic | 35.0% | |
| CTATCATAGTTCAATTGGGT+TGG | + | chr4_1:4761734-4761753 | Msa0530700:five_prime_UTR | 35.0% | |
| TGAGAAAATGAAGGAAAGTG+TGG | + | chr4_1:4761775-4761794 | Msa0530700:exon | 35.0% | |
| ! | GAGAAAATGAAGGAAAGTGT+GGG | + | chr4_1:4761776-4761795 | Msa0530700:exon | 35.0% |
| !!! | TTCACTGATTTTAGGTGCAA+AGG | - | chr4_1:4761806-4761825 | None:intergenic | 35.0% |
| TTGGTTTCTTCCCAATAAGA+AGG | + | chr4_1:4761885-4761904 | Msa0530700:CDS | 35.0% | |
| CCATCAAAATCAAAAGAACC+AGG | - | chr4_1:4761911-4761930 | None:intergenic | 35.0% | |
| !!! | CCTGGTTCTTTTGATTTTGA+TGG | + | chr4_1:4761908-4761927 | Msa0530700:CDS | 35.0% |
| TCATTTAGAAAACCTGGCAA+AGG | - | chr4_1:4762716-4762735 | None:intergenic | 35.0% | |
| ! | GGGTTTATTTCTTTCTTCCT+TGG | - | chr4_1:4762832-4762851 | None:intergenic | 35.0% |
| GGATAATCACATATCTTTCC+AGG | + | chr4_1:4762855-4762874 | Msa0530700:CDS | 35.0% | |
| GTTTAGTGAAAAATCTGACC+TGG | - | chr4_1:4762876-4762895 | None:intergenic | 35.0% | |
| TAAACGTGTCTATGATGACT+AGG | - | chr4_1:4763091-4763110 | None:intergenic | 35.0% | |
| GCCATTGCATATCCTTAAAA+AGG | - | chr4_1:4763120-4763139 | None:intergenic | 35.0% | |
| ! | AGGATATGCAATGGCTTTTA+AGG | + | chr4_1:4763125-4763144 | Msa0530700:intron | 35.0% |
| TCAGCTTAACTCTGATTGAT+AGG | + | chr4_1:4763265-4763284 | Msa0530700:intron | 35.0% | |
| CAGCTTAACTCTGATTGATA+GGG | + | chr4_1:4763266-4763285 | Msa0530700:intron | 35.0% | |
| ! | GCTCACACATTTTAAATGTG+AGG | - | chr4_1:4763335-4763354 | None:intergenic | 35.0% |
| TTGTTAACCATTCGATTCTC+AGG | + | chr4_1:4763470-4763489 | Msa0530700:CDS | 35.0% | |
| TGTTAACCATTCGATTCTCA+GGG | + | chr4_1:4763471-4763490 | Msa0530700:CDS | 35.0% | |
| TCTCAATCATGAAACCATCT+GGG | - | chr4_1:4763775-4763794 | None:intergenic | 35.0% | |
| ATCTCAATCATGAAACCATC+TGG | - | chr4_1:4763776-4763795 | None:intergenic | 35.0% | |
| ! | TTTTCCCACACAAAGATGTT+TGG | - | chr4_1:4763940-4763959 | None:intergenic | 35.0% |
| AAACATCTTTGTGTGGGAAA+AGG | + | chr4_1:4763939-4763958 | Msa0530700:three_prime_UTR | 35.0% | |
| TCGAAACAGAGTGACTTATT+TGG | + | chr4_1:4764100-4764119 | Msa0530700:three_prime_UTR | 35.0% | |
| GGAAGAAACCAAGAACATTC+TGG | - | chr4_1:4761877-4761896 | None:intergenic | 40.0% | |
| AAGAACCAGGCCTTCTTATT+GGG | - | chr4_1:4761898-4761917 | None:intergenic | 40.0% | |
| AAAGAACCAGGCCTTCTTAT+TGG | - | chr4_1:4761899-4761918 | None:intergenic | 40.0% | |
| !!! | CTTTTGATTTTGATGGGGCA+TGG | + | chr4_1:4761915-4761934 | Msa0530700:CDS | 40.0% |
| ! | TATGTGGTGACCTAATTTGC+AGG | + | chr4_1:4762749-4762768 | Msa0530700:intron | 40.0% |
| ! | GACCTAATTTGCAGGCTATT+TGG | + | chr4_1:4762757-4762776 | Msa0530700:intron | 40.0% |
| AGCCAAATAGCCTGCAAATT+AGG | - | chr4_1:4762762-4762781 | None:intergenic | 40.0% | |
| ATTTGCAGGCTATTTGGCTA+TGG | + | chr4_1:4762763-4762782 | Msa0530700:intron | 40.0% | |
| AGGCTATTTGGCTATGGTAT+TGG | + | chr4_1:4762769-4762788 | Msa0530700:intron | 40.0% | |
| ! | GCAATTTGAAGCAACCTTAG+AGG | - | chr4_1:4763158-4763177 | None:intergenic | 40.0% |
| GCATCGTGCAATTGTAGTAA+AGG | + | chr4_1:4763421-4763440 | Msa0530700:intron | 40.0% | |
| ! | TCTTTTCCCTGAGAATCGAA+TGG | - | chr4_1:4763480-4763499 | None:intergenic | 40.0% |
| ! | GGAAAAGAGCTCTGGTAATT+CGG | + | chr4_1:4763492-4763511 | Msa0530700:CDS | 40.0% |
| TGATGTGTAGTGTGAGAGTA+TGG | + | chr4_1:4763652-4763671 | Msa0530700:intron | 40.0% | |
| ! | GATGTGTAGTGTGAGAGTAT+GGG | + | chr4_1:4763653-4763672 | Msa0530700:intron | 40.0% |
| ! | ATGTGTAGTGTGAGAGTATG+GGG | + | chr4_1:4763654-4763673 | Msa0530700:intron | 40.0% |
| !! | CTATTTTTCCATGACCCAGA+TGG | + | chr4_1:4763758-4763777 | Msa0530700:CDS | 40.0% |
| CTTCCTGTGATTCCATTAGT+TGG | + | chr4_1:4763812-4763831 | Msa0530700:CDS | 40.0% | |
| TCACCAACTAATGGAATCAC+AGG | - | chr4_1:4763818-4763837 | None:intergenic | 40.0% | |
| ! | TGTGATTCCATTAGTTGGTG+AGG | + | chr4_1:4763817-4763836 | Msa0530700:CDS | 40.0% |
| TGTGACCAAACATCTTTGTG+TGG | + | chr4_1:4763932-4763951 | Msa0530700:three_prime_UTR | 40.0% | |
| GTGACCAAACATCTTTGTGT+GGG | + | chr4_1:4763933-4763952 | Msa0530700:three_prime_UTR | 40.0% | |
| ! | TAAGTCACTCTGTTTCGAGT+AGG | - | chr4_1:4764098-4764117 | None:intergenic | 40.0% |
| TTCTTCCCAATAAGAAGGCC+TGG | + | chr4_1:4761890-4761909 | Msa0530700:CDS | 45.0% | |
| !! | TCTTCCTTGGTAACGTCTCT+GGG | - | chr4_1:4762819-4762838 | None:intergenic | 45.0% |
| !! | TTCTTCCTTGGTAACGTCTC+TGG | - | chr4_1:4762820-4762839 | None:intergenic | 45.0% |
| ATTCTCAGGGAAAAGAGCTC+TGG | + | chr4_1:4763484-4763503 | Msa0530700:CDS | 45.0% | |
| TAATTCGGAGTTCGATCTCG+AGG | + | chr4_1:4763507-4763526 | Msa0530700:CDS | 45.0% | |
| ! | TGTGTAGTGTGAGAGTATGG+GGG | + | chr4_1:4763655-4763674 | Msa0530700:intron | 45.0% |
| GTTCGAGCAAGAGTAGAAGA+AGG | + | chr4_1:4763716-4763735 | Msa0530700:CDS | 45.0% | |
| GAGCAAGAGTAGAAGAAGGT+GGG | + | chr4_1:4763720-4763739 | Msa0530700:CDS | 45.0% | |
| AGAAGAAGGTGGGATTGAAG+TGG | + | chr4_1:4763730-4763749 | Msa0530700:CDS | 45.0% | |
| TCATGAAACCATCTGGGTCA+TGG | - | chr4_1:4763769-4763788 | None:intergenic | 45.0% | |
| CTTGCTACCTCACCAACTAA+TGG | - | chr4_1:4763827-4763846 | None:intergenic | 45.0% | |
| !!! | ATGAATTTTTATATTTTTTA+CGG | - | chr4_1:4762257-4762276 | None:intergenic | 5.0% |
| !! | TTATTAATAATTAACATATA+AGG | - | chr4_1:4764050-4764069 | None:intergenic | 5.0% |
| AGAACCCAGAGACGTTACCA+AGG | + | chr4_1:4762812-4762831 | Msa0530700:CDS | 50.0% | |
| CGAGCAAGAGTAGAAGAAGG+TGG | + | chr4_1:4763719-4763738 | Msa0530700:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4761581 | 4764138 | 4761581 | ID=Msa0530700;Name=Msa0530700 |
| chr4_1 | mRNA | 4761581 | 4764138 | 4761581 | ID=Msa0530700-mRNA-1;Parent=Msa0530700;Name=Msa0530700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=201|0.66|0.75|1|1|1|4|216|196 |
| chr4_1 | exon | 4761581 | 4761936 | 4761581 | ID=Msa0530700-mRNA-1:exon:1433;Parent=Msa0530700-mRNA-1 |
| chr4_1 | exon | 4762771 | 4762876 | 4762771 | ID=Msa0530700-mRNA-1:exon:1434;Parent=Msa0530700-mRNA-1 |
| chr4_1 | exon | 4763460 | 4763528 | 4763460 | ID=Msa0530700-mRNA-1:exon:1435;Parent=Msa0530700-mRNA-1 |
| chr4_1 | exon | 4763662 | 4764138 | 4763662 | ID=Msa0530700-mRNA-1:exon:1436;Parent=Msa0530700-mRNA-1 |
| chr4_1 | five_prime_UTR | 4761581 | 4761781 | 4761581 | ID=Msa0530700-mRNA-1:five_prime_utr;Parent=Msa0530700-mRNA-1 |
| chr4_1 | CDS | 4761782 | 4761936 | 4761782 | ID=Msa0530700-mRNA-1:cds;Parent=Msa0530700-mRNA-1 |
| chr4_1 | CDS | 4762771 | 4762876 | 4762771 | ID=Msa0530700-mRNA-1:cds;Parent=Msa0530700-mRNA-1 |
| chr4_1 | CDS | 4763460 | 4763528 | 4763460 | ID=Msa0530700-mRNA-1:cds;Parent=Msa0530700-mRNA-1 |
| chr4_1 | CDS | 4763662 | 4763922 | 4763662 | ID=Msa0530700-mRNA-1:cds;Parent=Msa0530700-mRNA-1 |
| chr4_1 | three_prime_UTR | 4763923 | 4764138 | 4763923 | ID=Msa0530700-mRNA-1:three_prime_utr;Parent=Msa0530700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
