AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298100 MtrunA17_Chr4g0055651 100.000 202 0 0 1 202 1 202 1.32e-152 421
Msa1298100 MtrunA17_Chr7g0250531 88.119 202 24 0 1 202 1 202 2.63e-137 382
Msa1298100 MtrunA17_Chr8g0335471 88.177 203 23 1 1 202 1 203 7.18e-135 376
Msa1298100 MtrunA17_Chr2g0276931 77.778 198 43 1 4 200 5 202 3.32e-116 328
Msa1298100 MtrunA17_Chr4g0030911 60.000 205 72 4 4 200 11 213 1.61e-86 254
Msa1298100 MtrunA17_Chr1g0212521 58.537 205 76 3 4 200 11 214 1.45e-85 251
Msa1298100 MtrunA17_Chr1g0182321 58.654 208 75 4 4 202 11 216 2.57e-85 251
Msa1298100 MtrunA17_Chr7g0263071 59.135 208 74 4 4 202 11 216 6.03e-85 250
Msa1298100 MtrunA17_Chr1g0182301 58.173 208 76 4 4 202 11 216 8.55e-85 249
Msa1298100 MtrunA17_Chr2g0327911 52.657 207 81 5 5 200 12 212 6.71e-72 217
Msa1298100 MtrunA17_Chr4g0032201 46.445 211 104 2 1 202 5 215 2.13e-66 203
Msa1298100 MtrunA17_Chr2g0276941 47.619 210 99 3 4 202 11 220 1.44e-63 196
Msa1298100 MtrunA17_Chr2g0290891 45.455 209 102 1 5 201 3 211 6.89e-62 191
Msa1298100 MtrunA17_Chr6g0458081 54.545 165 75 0 5 169 3 167 7.20e-62 191
Msa1298100 MtrunA17_Chr3g0112681 45.794 214 100 3 1 201 5 215 4.36e-61 189
Msa1298100 MtrunA17_Chr2g0315551 46.445 211 103 2 2 202 7 217 5.84e-61 189
Msa1298100 MtrunA17_Chr8g0384311 48.259 201 99 4 4 200 9 208 4.70e-60 186
Msa1298100 MtrunA17_Chr4g0046261 45.024 211 106 1 2 202 7 217 1.75e-59 185
Msa1298100 MtrunA17_Chr2g0283131 45.024 211 106 1 2 202 7 217 1.82e-59 185
Msa1298100 MtrunA17_Chr7g0234201 47.059 204 99 1 7 201 12 215 3.26e-59 184
Msa1298100 MtrunA17_Chr1g0189361 46.698 212 97 3 6 201 12 223 3.69e-59 185
Msa1298100 MtrunA17_Chr3g0123821 43.868 212 106 2 2 200 10 221 4.46e-59 184
Msa1298100 MtrunA17_Chr8g0381841 52.632 171 79 2 2 171 11 180 6.93e-59 184
Msa1298100 MtrunA17_Chr7g0265001 47.525 202 101 3 5 201 13 214 8.33e-59 184
Msa1298100 MtrunA17_Chr4g0040781 44.550 211 107 1 2 202 7 217 1.25e-58 183
Msa1298100 MtrunA17_Chr2g0325091 45.498 211 106 1 1 202 4 214 2.72e-58 182
Msa1298100 MtrunA17_Chr2g0319951 46.009 213 102 3 2 202 7 218 1.55e-57 181
Msa1298100 MtrunA17_Chr8g0349711 51.534 163 79 0 7 169 5 167 1.55e-57 180
Msa1298100 MtrunA17_Chr1g0159481 48.768 203 98 4 4 201 13 214 5.09e-57 179
Msa1298100 MtrunA17_Chr8g0346421 43.434 198 112 0 1 198 19 216 9.00e-57 179
Msa1298100 MtrunA17_Chr8g0349681 52.071 169 81 0 5 173 381 549 3.75e-56 186
Msa1298100 MtrunA17_Chr8g0349681 48.214 168 87 0 2 169 169 336 2.33e-51 174
Msa1298100 MtrunA17_Chr8g0349681 50.000 160 80 0 7 166 12 171 6.26e-50 170
Msa1298100 MtrunA17_Chr1g0180291 47.264 201 100 5 5 200 11 210 6.84e-56 176
Msa1298100 MtrunA17_Chr7g0275991 43.878 196 106 2 6 198 18 212 3.66e-55 175
Msa1298100 MtrunA17_Chr7g0231131 43.128 211 108 2 2 200 9 219 4.99e-55 174
Msa1298100 MtrunA17_Chr3g0130271 46.040 202 103 5 4 200 8 208 1.02e-54 173
Msa1298100 MtrunA17_Chr6g0482721 48.925 186 93 2 1 185 5 189 2.13e-54 172
Msa1298100 MtrunA17_Chr1g0197331 47.549 204 103 4 2 201 9 212 4.35e-54 171
Msa1298100 MtrunA17_Chr8g0351861 47.368 171 90 0 6 176 14 184 8.07e-54 171
Msa1298100 MtrunA17_Chr1g0174281 48.810 168 86 0 2 169 9 176 1.05e-53 171
Msa1298100 MtrunA17_Chr8g0392931 46.948 213 100 4 1 201 7 218 2.24e-53 170
Msa1298100 MtrunA17_Chr7g0214241 47.126 174 92 0 7 180 14 187 2.65e-52 167
Msa1298100 MtrunA17_Chr3g0109721 44.103 195 100 4 10 201 12 200 6.10e-52 166
Msa1298100 MtrunA17_Chr5g0433561 42.268 194 105 3 10 201 12 200 2.38e-50 161
Msa1298100 MtrunA17_Chr8g0390561 41.237 194 106 3 10 201 11 198 9.41e-48 155
Msa1298100 MtrunA17_Chr1g0199331 42.236 161 92 1 10 169 33 193 2.86e-43 143
Msa1298100 MtrunA17_Chr8g0382221 37.056 197 120 1 9 201 10 206 5.73e-43 143
Msa1298100 MtrunA17_Chr5g0400131 36.735 196 119 1 9 199 10 205 1.20e-42 142
Msa1298100 MtrunA17_Chr4g0055081 39.752 161 97 0 9 169 10 170 1.02e-41 140
Msa1298100 MtrunA17_Chr3g0123971 41.615 161 94 0 9 169 10 170 1.74e-41 139
Msa1298100 MtrunA17_Chr2g0331691 38.308 201 113 5 8 200 10 207 4.54e-40 135
Msa1298100 MtrunA17_Chr4g0004661 38.308 201 113 5 8 200 64 261 5.95e-39 134
Msa1298100 MtrunA17_Chr4g0034871 40.476 168 93 3 8 168 8 175 3.42e-38 130
Msa1298100 MtrunA17_Chr6g0466301 35.922 206 112 6 8 201 8 205 3.78e-35 123
Msa1298100 MtrunA17_Chr6g0465491 35.922 206 112 6 8 201 8 205 3.78e-35 123
Msa1298100 MtrunA17_Chr1g0201121 37.952 166 96 3 8 166 8 173 5.30e-34 120
Msa1298100 MtrunA17_Chr8g0383261 36.747 166 98 2 8 166 12 177 5.74e-33 117
Msa1298100 MtrunA17_Chr3g0138101 30.435 184 119 4 9 188 14 192 1.99e-24 95.9
Msa1298100 MtrunA17_Chr3g0138111 30.435 184 119 4 9 188 14 192 2.02e-24 95.9
Msa1298100 MtrunA17_Chr3g0138121 30.435 184 119 4 9 188 14 192 2.15e-24 95.5
Msa1298100 MtrunA17_Chr6g0465471 33.690 187 104 6 25 199 7 185 7.82e-24 94.0
Msa1298100 MtrunA17_Chr6g0466161 33.690 187 104 6 25 199 7 185 1.21e-23 93.6
Msa1298100 MtrunA17_Chr4g0037021 31.737 167 100 5 8 162 6 170 6.77e-23 91.3
Msa1298100 MtrunA17_Chr6g0486041 31.737 167 100 5 8 162 6 170 8.45e-23 91.3
Msa1298100 MtrunA17_Chr8g0371501 31.953 169 101 5 8 164 6 172 2.41e-22 89.7
Msa1298100 MtrunA17_Chr4g0046211 35.772 123 76 3 8 129 6 126 3.65e-22 87.8
Msa1298100 MtrunA17_Chr5g0405791 31.361 169 102 5 8 164 6 172 1.23e-21 87.8
Msa1298100 MtrunA17_Chr1g0178291 36.416 173 100 4 5 177 428 590 2.20e-21 91.3
Msa1298100 MtrunA17_Chr3g0117931 30.220 182 108 6 8 177 8 182 3.56e-21 87.0
Msa1298100 MtrunA17_Chr2g0325101 29.586 169 105 5 8 164 6 172 6.70e-21 85.9
Msa1298100 MtrunA17_Chr6g0466431 35.354 99 55 1 8 106 8 97 7.14e-17 72.8
Msa1298100 MtrunA17_Chr6g0465611 35.354 99 55 1 8 106 8 97 7.14e-17 72.8
Msa1298100 MtrunA17_Chr5g0434561 36.232 138 78 4 9 145 20 148 3.67e-15 70.5
Msa1298100 MtrunA17_Chr5g0401071 28.994 169 110 5 9 172 20 183 1.46e-12 63.5
Msa1298100 MtrunA17_Chr5g0443631 23.214 168 123 2 9 171 105 271 8.46e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298100 AT5G47200.1 90.099 202 20 0 1 202 1 202 1.98e-139 387
Msa1298100 AT4G17530.1 89.604 202 21 0 1 202 1 202 1.05e-138 386
Msa1298100 AT1G02130.1 87.192 203 25 1 1 202 1 203 2.38e-134 375
Msa1298100 AT3G11730.1 75.369 203 47 3 1 200 1 203 2.96e-114 324
Msa1298100 AT5G59840.1 59.615 208 73 4 4 202 11 216 1.28e-86 254
Msa1298100 AT3G46060.2 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1298100 AT3G46060.3 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1298100 AT3G46060.1 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1298100 AT3G53610.2 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1298100 AT3G53610.3 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1298100 AT3G53610.1 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1298100 AT3G09900.1 58.454 207 76 3 4 201 11 216 5.39e-82 243
Msa1298100 AT5G03520.1 59.024 205 76 3 4 201 11 214 2.63e-81 241
Msa1298100 AT4G17160.1 48.768 203 96 2 5 200 3 204 1.20e-65 201
Msa1298100 AT1G07410.1 45.714 210 106 2 1 202 5 214 1.16e-64 199
Msa1298100 AT5G47520.1 49.048 210 94 2 6 202 12 221 1.09e-63 196
Msa1298100 AT4G35860.1 45.370 216 92 2 5 201 3 211 1.88e-63 196
Msa1298100 AT1G09630.1 47.170 212 100 3 2 202 6 216 9.16e-63 194
Msa1298100 AT4G17170.1 46.411 209 100 2 5 201 3 211 3.57e-62 192
Msa1298100 AT5G45750.1 47.619 210 101 2 2 202 7 216 8.66e-62 191
Msa1298100 AT3G46830.1 44.131 213 108 1 1 202 5 217 3.64e-61 190
Msa1298100 AT3G46830.2 44.131 213 108 1 1 202 5 217 3.64e-61 190
Msa1298100 AT3G15060.1 48.113 212 98 3 2 202 7 217 4.53e-61 190
Msa1298100 AT5G03520.2 54.819 166 67 3 43 201 40 204 1.38e-60 188
Msa1298100 AT5G60860.1 45.972 211 104 1 2 202 7 217 1.73e-60 188
Msa1298100 AT1G28550.1 47.393 211 98 3 4 202 9 218 2.10e-60 188
Msa1298100 AT4G18430.1 45.714 210 104 1 2 201 7 216 2.20e-60 188
Msa1298100 AT3G07410.1 48.309 207 96 3 6 201 10 216 2.59e-60 188
Msa1298100 AT5G59150.1 42.723 213 111 1 1 202 5 217 3.05e-60 187
Msa1298100 AT1G16920.1 47.596 208 100 2 4 202 9 216 3.19e-60 187
Msa1298100 AT1G06400.1 45.238 210 106 2 2 202 7 216 4.32e-60 187
Msa1298100 AT4G39990.1 46.190 210 99 4 6 202 15 223 4.50e-60 187
Msa1298100 AT2G33870.1 46.919 211 99 3 4 202 9 218 1.66e-59 186
Msa1298100 AT5G47960.1 44.186 215 107 3 1 202 8 222 3.34e-59 185
Msa1298100 AT5G65270.1 45.540 213 99 5 6 202 15 226 6.66e-59 184
Msa1298100 AT4G18800.1 45.673 208 106 2 2 202 7 214 1.11e-58 184
Msa1298100 AT1G05810.1 44.231 208 105 2 6 202 10 217 5.17e-56 177
Msa1298100 AT1G43890.3 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1298100 AT1G43890.1 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1298100 AT1G43890.2 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1298100 AT1G05810.2 44.231 208 105 2 6 202 56 263 1.07e-55 177
Msa1298100 AT5G03530.2 48.515 202 98 4 5 201 10 210 2.03e-55 175
Msa1298100 AT5G03530.1 48.515 202 98 4 5 201 10 210 2.03e-55 175
Msa1298100 AT2G43130.1 44.608 204 105 2 6 201 10 213 2.44e-55 175
Msa1298100 AT3G12160.1 42.654 211 109 2 2 200 9 219 4.81e-55 174
Msa1298100 AT1G18200.1 46.798 203 98 1 2 194 7 209 8.22e-55 174
Msa1298100 AT1G73640.1 48.691 191 93 2 4 190 9 198 9.56e-54 172
Msa1298100 AT2G31680.1 43.062 209 107 2 6 202 10 218 1.13e-53 171
Msa1298100 AT1G01200.1 43.781 201 110 2 1 198 21 221 1.73e-51 166
Msa1298100 AT4G19640.1 41.969 193 107 2 10 201 12 200 2.89e-48 157
Msa1298100 AT5G45130.1 41.538 195 105 4 10 201 12 200 4.21e-46 151
Msa1298100 AT3G54840.1 43.353 173 92 3 10 181 35 202 9.70e-45 147
Msa1298100 AT3G09910.5 45.405 185 97 4 5 187 10 192 1.18e-44 147
Msa1298100 AT3G09910.4 45.405 185 97 4 5 187 10 192 1.18e-44 147
Msa1298100 AT5G45130.2 40.933 193 105 4 12 201 22 208 1.63e-44 147
Msa1298100 AT2G44610.1 37.879 198 118 1 9 201 10 207 2.12e-44 147
Msa1298100 AT3G09910.3 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1298100 AT3G09910.1 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1298100 AT3G09910.2 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1298100 AT3G54840.3 43.023 172 92 3 11 181 2 168 2.45e-44 145
Msa1298100 AT3G54840.2 44.805 154 84 1 10 162 35 188 6.05e-44 145
Msa1298100 AT4G35860.2 42.105 171 73 2 50 201 2 165 1.39e-42 141
Msa1298100 AT2G22290.1 38.191 199 115 3 9 201 10 206 6.25e-42 140
Msa1298100 AT5G10260.1 36.041 197 121 1 9 200 10 206 6.12e-41 138
Msa1298100 AT1G52280.1 39.500 200 110 5 8 199 8 204 8.98e-41 137
Msa1298100 AT4G39890.1 41.975 162 93 1 9 169 10 171 1.11e-40 137
Msa1298100 AT5G59150.2 39.634 164 88 1 50 202 3 166 1.71e-40 135
Msa1298100 AT3G18820.1 42.857 168 89 3 8 168 8 175 3.11e-40 136
Msa1298100 AT3G16100.1 38.500 200 112 5 8 199 8 204 1.38e-39 134
Msa1298100 AT5G64990.1 39.759 166 100 0 9 174 8 173 1.91e-38 132
Msa1298100 AT4G19640.3 45.802 131 71 0 10 140 12 142 2.02e-37 129
Msa1298100 AT1G49300.2 37.000 200 115 5 8 199 8 204 3.29e-37 129
Msa1298100 AT1G49300.1 37.000 200 115 5 8 199 8 204 3.29e-37 129
Msa1298100 AT2G21880.1 39.157 166 94 3 8 166 9 174 1.56e-36 127
Msa1298100 AT4G19640.2 46.400 125 67 0 10 134 12 136 2.13e-36 124
Msa1298100 AT5G64990.2 38.150 173 100 1 9 174 8 180 1.17e-35 125
Msa1298100 AT1G22740.1 35.784 204 109 5 8 199 8 201 1.57e-35 124
Msa1298100 AT4G09720.1 39.759 166 93 3 8 166 8 173 7.12e-34 120
Msa1298100 AT4G09720.4 37.427 171 95 3 8 166 8 178 7.37e-32 115
Msa1298100 AT5G39620.1 40.000 165 92 4 9 166 6 170 1.71e-31 114
Msa1298100 AT4G09720.3 36.158 177 95 3 8 166 8 184 7.06e-31 112
Msa1298100 AT2G21880.4 40.146 137 75 3 37 166 13 149 1.06e-28 106
Msa1298100 AT2G21880.3 40.146 137 75 3 37 166 13 149 1.06e-28 106
Msa1298100 AT2G21880.2 34.337 166 94 4 8 166 9 166 1.18e-26 101
Msa1298100 AT4G09720.6 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1298100 AT4G09720.5 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1298100 AT4G09720.2 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1298100 AT2G44690.1 34.132 167 96 5 8 162 18 182 4.12e-25 97.8
Msa1298100 AT4G35020.1 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1298100 AT4G35020.2 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1298100 AT4G35020.3 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1298100 AT5G55190.1 30.435 184 119 4 9 188 14 192 2.72e-24 95.9
Msa1298100 AT4G28950.1 33.333 165 98 5 8 162 6 168 3.00e-24 95.5
Msa1298100 AT5G20020.1 28.796 191 129 3 9 195 14 201 3.90e-24 95.5
Msa1298100 AT5G55080.1 30.864 162 107 4 9 169 14 171 4.03e-24 95.5
Msa1298100 AT5G20010.1 31.056 161 108 2 9 169 14 171 5.14e-24 95.1
Msa1298100 AT3G51300.1 32.934 167 98 5 10 164 8 172 1.25e-23 93.6
Msa1298100 AT1G75840.1 32.544 169 100 5 8 164 6 172 3.63e-23 92.0
Msa1298100 AT2G17800.2 32.544 169 100 5 8 164 6 172 6.87e-23 91.7
Msa1298100 AT2G17800.1 32.544 169 100 5 8 164 6 172 6.87e-23 91.7
Msa1298100 AT4G35950.1 32.544 169 100 5 8 164 6 172 9.95e-23 91.3
Msa1298100 AT5G45970.1 30.539 167 102 5 8 162 6 170 4.73e-22 89.4
Msa1298100 AT5G46025.1 40.187 107 63 1 70 175 6 112 6.01e-22 86.7
Msa1298100 AT1G20090.1 31.361 169 102 5 8 164 5 171 1.37e-21 88.2
Msa1298100 AT3G48040.1 30.178 169 104 5 8 164 8 174 1.12e-20 85.9
Msa1298100 AT5G62880.1 29.885 174 108 5 8 169 8 179 6.61e-20 84.0
Msa1298100 AT3G48040.2 33.333 123 79 3 8 129 8 128 3.98e-19 81.3
Msa1298100 AT5G62880.2 34.146 123 78 3 8 129 8 128 6.09e-19 80.9
Msa1298100 AT4G35020.4 35.965 114 70 3 10 122 8 119 2.45e-18 78.2
Msa1298100 AT4G35020.5 35.965 114 70 3 10 122 8 119 2.45e-18 78.2
Msa1298100 AT5G67560.1 33.962 159 95 5 9 162 20 173 3.84e-14 68.2
Msa1298100 AT5G37680.1 34.058 138 81 4 9 145 20 148 4.13e-14 68.2
Msa1298100 AT3G49870.2 31.609 174 99 6 9 172 1 164 4.88e-14 67.4
Msa1298100 AT3G51290.2 32.394 142 82 5 35 164 634 773 5.05e-14 70.5
Msa1298100 AT3G49870.1 32.759 174 97 7 9 172 20 183 1.58e-13 66.2
Msa1298100 AT3G22950.1 31.298 131 76 5 1 127 12 132 1.57e-11 60.8
Msa1298100 AT3G22950.2 31.298 131 76 5 1 127 12 132 1.57e-11 60.8
Msa1298100 AT3G49860.1 28.205 156 104 4 9 160 12 163 1.90e-11 60.5
Msa1298100 AT5G37680.2 35.780 109 60 4 38 145 2 101 3.50e-11 58.9

Find 82 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTGGTTGTCCTCGAATT+TGG 0.168291 8_3:-58738353 None:intergenic
ACTTACAATTTGAAGTTTAA+TGG 0.206147 8_3:-58737163 None:intergenic
CCTCGAATTTGGACTGTTGC+AGG 0.237144 8_3:-58738342 None:intergenic
CAGGCATTTGCAGATGAAAT+TGG 0.240708 8_3:+58738062 Msa1298100:intron
CTGCTGGTCAAGAACGTTTC+CGG 0.274066 8_3:+58737636 Msa1298100:CDS
AGAGTTGAGACTTACTATTC+AGG 0.317299 8_3:-58734903 None:intergenic
TGAGTAACGTAAAATGTGTT+TGG 0.320714 8_3:-58738623 None:intergenic
GAGTAACGTAAAATGTGTTT+GGG 0.326797 8_3:-58738622 None:intergenic
TGAAATTGGAATTCCTTTCA+TGG 0.332549 8_3:+58738076 Msa1298100:CDS
TCACTTATCTCTTTAGTTGT+TGG 0.357342 8_3:+58738664 Msa1298100:three_prime_UTR
CAATGTGGAACAAGCTTTCA+TGG 0.386569 8_3:+58738121 Msa1298100:CDS
TAACATTGTTAAAGCTCTCT+TGG 0.389666 8_3:-58737815 None:intergenic
ACGAGCAGCAACCAGCCTTC+TGG 0.395079 8_3:-58738377 None:intergenic
TCTTAGAGACCAAGTATTCA+TGG 0.395534 8_3:+58738399 Msa1298100:exon
TACTCAATAGCTTCCCGTAT+TGG 0.396704 8_3:+58738640 Msa1298100:three_prime_UTR
AATTTGGACTGTTGCAGGCC+TGG 0.409513 8_3:-58738337 None:intergenic
AATGTTAACAAGCTTCTAGT+TGG 0.417837 8_3:+58737876 Msa1298100:CDS
TTGGCAGCGAAGGGAGTTAC+CGG 0.420942 8_3:-58734833 None:intergenic
CTTCTAAGACCATGAATACT+TGG 0.425115 8_3:-58738408 None:intergenic
AAGAGATAAGTGAGCCAATA+CGG 0.427083 8_3:-58738654 None:intergenic
TGTTGCAGGCCTGGCACTGT+TGG 0.432139 8_3:-58738328 None:intergenic
CAACCAGCCTTCTGGTTCAC+TGG 0.436527 8_3:-58738369 None:intergenic
AAGGGATCGGAAGAAGGGTT+TGG 0.449473 8_3:-58734852 None:intergenic
AAAGATGGAAGAAGAAATGA+AGG 0.458708 8_3:-58734777 None:intergenic
AGAAATTGAGAAGCGAAAGA+TGG 0.467173 8_3:-58734792 None:intergenic
GAAAATCCGCACTGTTGAGC+AGG 0.471772 8_3:+58737131 Msa1298100:intron
GTCAACCTGCCAACAGTGCC+AGG 0.473985 8_3:+58738319 Msa1298100:CDS
AGCTACTATCGTGGGGCTCA+TGG 0.480037 8_3:+58737671 Msa1298100:CDS
GAAAGCTTGTTCCACATTGG+AGG 0.502915 8_3:-58738117 None:intergenic
ATCGGAAAGGGATCGGAAGA+AGG 0.506069 8_3:-58734858 None:intergenic
TTGATTGGAGATTCTGGTGT+GGG 0.506444 8_3:+58736463 Msa1298100:CDS
ATTGTATAGTGGGACACTGC+TGG 0.512939 8_3:+58737620 Msa1298100:intron
TCCGCACTGTTGAGCAGGAT+GGG 0.520866 8_3:+58737136 Msa1298100:CDS
TTAGCACTAGTTTCCATGAA+AGG 0.524383 8_3:-58738089 None:intergenic
ATCCGCACTGTTGAGCAGGA+TGG 0.528930 8_3:+58737135 Msa1298100:CDS
CGAAGGGAGTTACCGGTCGC+CGG 0.532984 8_3:-58734826 None:intergenic
AATCACCTTTGCTGTTTCAG+AGG 0.533991 8_3:-58737934 None:intergenic
CGGAGGTATACGCATCAAGA+AGG 0.536232 8_3:-58734720 None:intergenic
TAAAATGACTCGCTTGGTGT+CGG 0.537749 8_3:-58734740 None:intergenic
ATGACGGTGAGAGGTTGAAT+CGG 0.541849 8_3:-58734876 None:intergenic
GAAGAAGGGTTTGGCAGCGA+AGG 0.542052 8_3:-58734843 None:intergenic
AGTAGCTGCTAGTTATAGTC+CGG 0.542099 8_3:-58737655 None:intergenic
TAACTAGCAGCTACTATCGT+GGG 0.548282 8_3:+58737663 Msa1298100:CDS
ATACGCATCAAGAAGGGAGT+GGG 0.550854 8_3:-58734713 None:intergenic
AGAGATAAGTGAGCCAATAC+GGG 0.555982 8_3:-58738653 None:intergenic
AGGTTGAATCGGAAAGGGAT+CGG 0.562913 8_3:-58734865 None:intergenic
TGTGTTTGGGGCAACGAACA+AGG 0.563689 8_3:-58738609 None:intergenic
GTGAGAGGTTGAATCGGAAA+GGG 0.564038 8_3:-58734870 None:intergenic
GACAGCTATATCAGTACCAT+CGG 0.567693 8_3:+58737008 Msa1298100:CDS
CAGAACTTACAGCAAACCTC+AGG 0.568006 8_3:-58736501 None:intergenic
TGGAAACAAGAGCGATCTCT+CGG 0.568213 8_3:+58737896 Msa1298100:CDS
GCAAGTCATGTCTCCTCCTG+AGG 0.576917 8_3:+58736485 Msa1298100:CDS
TGGTACTGATATAGCTGTCA+AGG 0.577148 8_3:-58737004 None:intergenic
GGTGAGAGGTTGAATCGGAA+AGG 0.581313 8_3:-58734871 None:intergenic
AAGAAGGGTTTGGCAGCGAA+GGG 0.582589 8_3:-58734842 None:intergenic
TCAGGATTCATGACGGTGAG+AGG 0.583650 8_3:-58734885 None:intergenic
CCTGCAACAGTCCAAATTCG+AGG 0.584589 8_3:+58738342 Msa1298100:CDS
TATACGCATCAAGAAGGGAG+TGG 0.591545 8_3:-58734714 None:intergenic
CATGAAAGCTTGTTCCACAT+TGG 0.594293 8_3:-58738120 None:intergenic
CAACCAGTGAACCAGAAGGC+TGG 0.595916 8_3:+58738366 Msa1298100:CDS
TCGGAAAGGGATCGGAAGAA+GGG 0.597755 8_3:-58734857 None:intergenic
GAGACGTATGCCAACCACTT+CGG 0.601230 8_3:-58734690 None:intergenic
GGAACAAGCTTTCATGGCCA+TGG 0.601950 8_3:+58738127 Msa1298100:CDS
AATGACTCGCTTGGTGTCGG+AGG 0.604170 8_3:-58734737 None:intergenic
GTTGATTGGAGATTCTGGTG+TGG 0.609925 8_3:+58736462 Msa1298100:CDS
GTGGCAAGCACCGAAGTGGT+TGG 0.616304 8_3:+58734680 None:intergenic
AACTTACAGCAAACCTCAGG+AGG 0.618028 8_3:-58736498 None:intergenic
AGAAGTTCCATGTGTCTCTG+TGG 0.620705 8_3:+58738426 Msa1298100:three_prime_UTR
ATAACTAGCAGCTACTATCG+TGG 0.626182 8_3:+58737662 Msa1298100:CDS
GGAGGTATACGCATCAAGAA+GGG 0.627373 8_3:-58734719 None:intergenic
GCTTACAAAGTCCACTCCGA+TGG 0.633467 8_3:-58737024 None:intergenic
GCTTTAACAATGTTAAGCAG+TGG 0.636327 8_3:+58737823 Msa1298100:CDS
TTACATGCCACAGAGACACA+TGG 0.640787 8_3:-58738433 None:intergenic
TGTGTCCTCTGAAACAGCAA+AGG 0.645238 8_3:+58737929 Msa1298100:CDS
TCCCATCCTGCTCAACAGTG+CGG 0.647894 8_3:-58737137 None:intergenic
ACACGTGGCAAGCACCGAAG+TGG 0.656912 8_3:+58734676 None:intergenic
AGTAACGTAAAATGTGTTTG+GGG 0.658888 8_3:-58738621 None:intergenic
TACGCATCAAGAAGGGAGTG+GGG 0.662707 8_3:-58734712 None:intergenic
AACTAGCAGCTACTATCGTG+GGG 0.674225 8_3:+58737664 Msa1298100:CDS
CTATATCAGTACCATCGGAG+TGG 0.681244 8_3:+58737013 Msa1298100:CDS
AGGACAACCAGTGAACCAGA+AGG 0.685270 8_3:+58738362 Msa1298100:CDS
TTACTATTCAGGATTCATGA+CGG 0.701188 8_3:-58734892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTTAAAAATAAGAC+AGG - chr8_3:58734990-58735009 None:intergenic 10.0%
!!! AAGAATCATAATTATTTTAT+GGG - chr8_3:58736250-58736269 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAACAG+AGG - chr8_3:58736529-58736548 None:intergenic 10.0%
!! AAAATGTAATAGTAAAAAAT+GGG - chr8_3:58736611-58736630 None:intergenic 10.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr8_3:58735380-58735399 None:intergenic 15.0%
!!! TTGTTTTATGATTGAATTTA+GGG + chr8_3:58735474-58735493 Msa1298100:intron 15.0%
!!! TTTTAAACCTATTAACTTTA+GGG - chr8_3:58735636-58735655 None:intergenic 15.0%
!!! TTTTTAAACCTATTAACTTT+AGG - chr8_3:58735637-58735656 None:intergenic 15.0%
!! TAGGTTTAAAAATTTATTAG+AGG + chr8_3:58735645-58735664 Msa1298100:intron 15.0%
!!! CAAGAATCATAATTATTTTA+TGG - chr8_3:58736251-58736270 None:intergenic 15.0%
!! AATAATATCATATCTTTGAT+TGG + chr8_3:58736397-58736416 Msa1298100:intron 15.0%
!! ATAATATCATATCTTTGATT+GGG + chr8_3:58736398-58736417 Msa1298100:intron 15.0%
!! GAAAATGTAATAGTAAAAAA+TGG - chr8_3:58736612-58736631 None:intergenic 15.0%
!!! CTTTTTAAATTTTTTTTTGC+AGG + chr8_3:58737773-58737792 Msa1298100:intron 15.0%
!! ACATCAAAATATTAGATTAA+AGG - chr8_3:58738025-58738044 None:intergenic 15.0%
!! AAAAAATTATGTACAAAAGT+AGG + chr8_3:58738562-58738581 Msa1298100:three_prime_UTR 15.0%
!!! TTTACTTTTTATCTTATGCA+TGG + chr8_3:58735090-58735109 Msa1298100:intron 20.0%
!! AACTAAACATGATAACTAAA+CGG - chr8_3:58735192-58735211 None:intergenic 20.0%
!! TTTCTTAAAATTGATACACA+TGG + chr8_3:58735335-58735354 Msa1298100:intron 20.0%
!! TTCTTAAAATTGATACACAT+GGG + chr8_3:58735336-58735355 Msa1298100:intron 20.0%
!!! GTTGTTTTATGATTGAATTT+AGG + chr8_3:58735473-58735492 Msa1298100:intron 20.0%
!! TATGTTAAAAAATGTTGTAC+AGG + chr8_3:58735784-58735803 Msa1298100:intron 20.0%
!! TGGTATATCCTTATAAAATA+AGG + chr8_3:58736053-58736072 Msa1298100:intron 20.0%
!!! AACATTCTCCTTATTTTATA+AGG - chr8_3:58736064-58736083 None:intergenic 20.0%
!!! TTTAAATCGAAATTTTGTCT+TGG - chr8_3:58736187-58736206 None:intergenic 20.0%
!! TAATATCATATCTTTGATTG+GGG + chr8_3:58736399-58736418 Msa1298100:intron 20.0%
!!! TTTTTTTCCTTCTTTAGTTA+TGG + chr8_3:58736546-58736565 Msa1298100:intron 20.0%
!! AGTTGAATATAAAGAACATA+TGG + chr8_3:58736638-58736657 Msa1298100:intron 20.0%
!! ACTTCATAAAATATCATTCA+AGG - chr8_3:58736931-58736950 None:intergenic 20.0%
!!! TTGAATGATATTTTATGAAG+TGG + chr8_3:58736930-58736949 Msa1298100:intron 20.0%
!! ATAAGTTTAAATGGTAGATA+TGG - chr8_3:58737053-58737072 None:intergenic 20.0%
!! AACATGGAAATAAGTTTAAA+TGG - chr8_3:58737062-58737081 None:intergenic 20.0%
!!! ACTTACAATTTGAAGTTTAA+TGG - chr8_3:58737166-58737185 None:intergenic 20.0%
!! TTTAGATGTAGAAAACAAAT+TGG - chr8_3:58737276-58737295 None:intergenic 20.0%
!! TTATATGTCCATTTGATAAA+TGG + chr8_3:58737411-58737430 Msa1298100:intron 20.0%
!! TTGATTTCCTAATATTCAAT+GGG - chr8_3:58737512-58737531 None:intergenic 20.0%
!!! ATTGATTTCCTAATATTCAA+TGG - chr8_3:58737513-58737532 None:intergenic 20.0%
!!! TGCATTTTTTTATTGTATAG+TGG + chr8_3:58737609-58737628 Msa1298100:intron 20.0%
!!! GCATTTTTTTATTGTATAGT+GGG + chr8_3:58737610-58737629 Msa1298100:intron 20.0%
!! CAAAATATTAGATTAAAGGA+AGG - chr8_3:58738021-58738040 None:intergenic 20.0%
!! CAATTTCTCTTTTCTTTATC+CGG + chr8_3:58734807-58734826 Msa1298100:five_prime_UTR 25.0%
!!! AGGAAAGAATTAATTTGTGA+CGG - chr8_3:58734970-58734989 None:intergenic 25.0%
!! AGAGATGTTCAATTTTCATA+AGG + chr8_3:58735264-58735283 Msa1298100:intron 25.0%
! AAAACAACACTTATGAATGA+AGG - chr8_3:58735461-58735480 None:intergenic 25.0%
! CATATTCATTGATCTATCTA+TGG - chr8_3:58735589-58735608 None:intergenic 25.0%
!! TTTTTAACATATATCCCACA+TGG - chr8_3:58735775-58735794 None:intergenic 25.0%
! TAAATGATGTCCTATATATG+TGG + chr8_3:58735885-58735904 Msa1298100:intron 25.0%
! AATCAATTTCTTGTCTTCAT+TGG + chr8_3:58736033-58736052 Msa1298100:intron 25.0%
!! TTATAAAAGCTTGCCAATTT+TGG - chr8_3:58736118-58736137 None:intergenic 25.0%
!! ATTGGCAAGCTTTTATAAAA+AGG + chr8_3:58736120-58736139 Msa1298100:intron 25.0%
!! AAATGAGTTCTAGTCTATAA+TGG - chr8_3:58736312-58736331 None:intergenic 25.0%
! ATTATAGACTAGAACTCATT+TGG + chr8_3:58736311-58736330 Msa1298100:intron 25.0%
! TTATAGACTAGAACTCATTT+GGG + chr8_3:58736312-58736331 Msa1298100:intron 25.0%
!! TATCTTTTTCCTAAAGAGAA+TGG - chr8_3:58736367-58736386 None:intergenic 25.0%
!! ATTCTCTTTAGGAAAAAGAT+AGG + chr8_3:58736366-58736385 Msa1298100:intron 25.0%
! ATAGTCACTGAAAATAAGAT+AGG - chr8_3:58736428-58736447 None:intergenic 25.0%
!! AATGATATTTTATGAAGTGG+AGG + chr8_3:58736933-58736952 Msa1298100:intron 25.0%
!! TTTTTCTTTTTCTGTGAAAC+AGG + chr8_3:58736971-58736990 Msa1298100:intron 25.0%
! TACTAAAGTTGAAAACAACA+TGG - chr8_3:58737078-58737097 None:intergenic 25.0%
! AATACTGAACAAGTTGTTAT+TGG + chr8_3:58737210-58737229 Msa1298100:intron 25.0%
! CATTTGAACAGTATTATTTG+AGG + chr8_3:58737475-58737494 Msa1298100:intron 25.0%
! AAAGTTACCCATTGAATATT+AGG + chr8_3:58737502-58737521 Msa1298100:intron 25.0%
!! AATTTCCTTTTCAAACACTT+CGG + chr8_3:58737530-58737549 Msa1298100:intron 25.0%
!! AATTGTGAGTCTTTTTAAAC+CGG + chr8_3:58737697-58737716 Msa1298100:intron 25.0%
!! ATTTCCTTTTTACATTGTCT+TGG + chr8_3:58737733-58737752 Msa1298100:intron 25.0%
!! TTTCCTTTTTACATTGTCTT+GGG + chr8_3:58737734-58737753 Msa1298100:intron 25.0%
! TATGGAATTTCTGTATGTAA+AGG + chr8_3:58738170-58738189 Msa1298100:intron 25.0%
! GTAAATGAGGTTAATAATCA+AGG - chr8_3:58738267-58738286 None:intergenic 25.0%
AAAGATGGAAGAAGAAATGA+AGG - chr8_3:58734780-58734799 None:intergenic 30.0%
TTACTATTCAGGATTCATGA+CGG - chr8_3:58734895-58734914 None:intergenic 30.0%
!! TTAATTTGTGACGGGAAATT+TGG - chr8_3:58734961-58734980 None:intergenic 30.0%
!! GGAAAGAATTAATTTGTGAC+GGG - chr8_3:58734969-58734988 None:intergenic 30.0%
! TGGATTGTGAAATTTGTTCA+TGG + chr8_3:58735110-58735129 Msa1298100:intron 30.0%
! TTGATTATGTGATCCACTTT+TGG + chr8_3:58735236-58735255 Msa1298100:intron 30.0%
TAAAATTGATACACATGGGA+TGG + chr8_3:58735340-58735359 Msa1298100:intron 30.0%
!! TCTATAGTTTGTTTCTTCCA+CGG + chr8_3:58735528-58735547 Msa1298100:intron 30.0%
ATGATGTCTTGAGTAAAATG+TGG + chr8_3:58735606-58735625 Msa1298100:intron 30.0%
! TAAACCTATTAACTTTAGGG+AGG - chr8_3:58735633-58735652 None:intergenic 30.0%
! TGTCTTTTGTAATCTTGTAC+TGG + chr8_3:58735703-58735722 Msa1298100:intron 30.0%
! GTCTTTTGTAATCTTGTACT+GGG + chr8_3:58735704-58735723 Msa1298100:intron 30.0%
! TCTTTTGTAATCTTGTACTG+GGG + chr8_3:58735705-58735724 Msa1298100:intron 30.0%
! GAAATACTTTTGTCCATTAG+AGG - chr8_3:58735734-58735753 None:intergenic 30.0%
AAAAAATGTTGTACAGGTCA+TGG + chr8_3:58735790-58735809 Msa1298100:intron 30.0%
AAAAATGTTGTACAGGTCAT+GGG + chr8_3:58735791-58735810 Msa1298100:intron 30.0%
ATTGGTTAAGCAACCAAAAT+TGG + chr8_3:58736102-58736121 Msa1298100:intron 30.0%
! TTGTTCAAGCTTTTGTTGAT+TGG + chr8_3:58736448-58736467 Msa1298100:CDS 30.0%
AAGATGACCATAACTAAAGA+AGG - chr8_3:58736556-58736575 None:intergenic 30.0%
! GAACATATGGATGTGTTTTT+AGG + chr8_3:58736651-58736670 Msa1298100:intron 30.0%
TCTTGACCATAAACAATGTA+AGG + chr8_3:58736752-58736771 Msa1298100:intron 30.0%
!!! GTCATTTTTATGTGAGAAGA+AGG - chr8_3:58736862-58736881 None:intergenic 30.0%
!! ATTTTCTAAAGAAGGAAGCA+TGG - chr8_3:58737117-58737136 None:intergenic 30.0%
!!! TCCATGAGAAGTTTTATTTG+AGG + chr8_3:58737362-58737381 Msa1298100:intron 30.0%
TCCTCAAATAAAACTTCTCA+TGG - chr8_3:58737366-58737385 None:intergenic 30.0%
! AATTGGTAACTGGAAAAACT+TGG - chr8_3:58737443-58737462 None:intergenic 30.0%
AAATGATCCAAGAACACAAT+TGG - chr8_3:58737460-58737479 None:intergenic 30.0%
AAAAGGAAATTGCTGACAAA+GGG - chr8_3:58737723-58737742 None:intergenic 30.0%
AAAAAGGAAATTGCTGACAA+AGG - chr8_3:58737724-58737743 None:intergenic 30.0%
TTTCCCAAGACAATGTAAAA+AGG - chr8_3:58737740-58737759 None:intergenic 30.0%
TAACATTGTTAAAGCTCTCT+TGG - chr8_3:58737818-58737837 None:intergenic 30.0%
! TAACATTTTCACTTGCATAG+CGG - chr8_3:58737863-58737882 None:intergenic 30.0%
AATGTTAACAAGCTTCTAGT+TGG + chr8_3:58737876-58737895 Msa1298100:CDS 30.0%
AAAAAAATGTCACTGGAAGT+GGG - chr8_3:58737993-58738012 None:intergenic 30.0%
AAAAAAAATGTCACTGGAAG+TGG - chr8_3:58737994-58738013 None:intergenic 30.0%
GGACTTAAAAAAAATGTCAC+TGG - chr8_3:58738000-58738019 None:intergenic 30.0%
TGAAATTGGAATTCCTTTCA+TGG + chr8_3:58738076-58738095 Msa1298100:CDS 30.0%
GCTGAAATTAAAAACAGGTA+TGG + chr8_3:58738152-58738171 Msa1298100:intron 30.0%
! CAGTATCTATTGACTAAACA+AGG - chr8_3:58738239-58738258 None:intergenic 30.0%
AGTAACGTAAAATGTGTTTG+GGG - chr8_3:58738624-58738643 None:intergenic 30.0%
GAGTAACGTAAAATGTGTTT+GGG - chr8_3:58738625-58738644 None:intergenic 30.0%
TGAGTAACGTAAAATGTGTT+TGG - chr8_3:58738626-58738645 None:intergenic 30.0%
TCACTTATCTCTTTAGTTGT+TGG + chr8_3:58738664-58738683 Msa1298100:three_prime_UTR 30.0%
!!! GAGTTTTAAAATGACTCGCT+TGG - chr8_3:58734749-58734768 None:intergenic 35.0%
AGAAATTGAGAAGCGAAAGA+TGG - chr8_3:58734795-58734814 None:intergenic 35.0%
AGAGTTGAGACTTACTATTC+AGG - chr8_3:58734906-58734925 None:intergenic 35.0%
TAAACGGATCTAAATCAGCA+AGG - chr8_3:58735155-58735174 None:intergenic 35.0%
AGATCCGTTTAATTAGTCGA+TGG + chr8_3:58735164-58735183 Msa1298100:intron 35.0%
! GGATCCATCGACTAATTAAA+CGG - chr8_3:58735171-58735190 None:intergenic 35.0%
ACATCTCTTGAAACCAAAAG+TGG - chr8_3:58735252-58735271 None:intergenic 35.0%
GTAAATGCATGTGAACTCTA+AGG + chr8_3:58735286-58735305 Msa1298100:intron 35.0%
!! CTCTGAGTTGAAAAAGCATT+CGG - chr8_3:58735505-58735524 None:intergenic 35.0%
TGCATGACTTCAATCAATCT+AGG + chr8_3:58735846-58735865 Msa1298100:intron 35.0%
ATGTACGATGCCACATATAT+AGG - chr8_3:58735898-58735917 None:intergenic 35.0%
GCAAAACATGACTGTCTAAA+AGG - chr8_3:58735927-58735946 None:intergenic 35.0%
!! CTTTTGTTGATTGGAGATTC+TGG + chr8_3:58736457-58736476 Msa1298100:CDS 35.0%
!! AGGCATTGAAAAAGTGTGTA+TGG + chr8_3:58736671-58736690 Msa1298100:intron 35.0%
TATATGCACCAGAGAGTAAA+AGG + chr8_3:58736723-58736742 Msa1298100:intron 35.0%
! GATTTACTCCTTTTACTCTC+TGG - chr8_3:58736734-58736753 None:intergenic 35.0%
CCTTGACCTTACATTGTTTA+TGG - chr8_3:58736761-58736780 None:intergenic 35.0%
CCATAAACAATGTAAGGTCA+AGG + chr8_3:58736758-58736777 Msa1298100:intron 35.0%
CTATTTGTGGTTTGATCGAA+CGG + chr8_3:58736825-58736844 Msa1298100:intron 35.0%
!! TTATTGGTTCTGAACTCTGA+TGG + chr8_3:58737226-58737245 Msa1298100:intron 35.0%
!! TATTGGTTCTGAACTCTGAT+GGG + chr8_3:58737227-58737246 Msa1298100:intron 35.0%
GGAATGAGCCATTTATCAAA+TGG - chr8_3:58737422-58737441 None:intergenic 35.0%
ACATTGTCTTGGGAAAACAA+TGG + chr8_3:58737744-58737763 Msa1298100:intron 35.0%
GCTTTAACAATGTTAAGCAG+TGG + chr8_3:58737823-58737842 Msa1298100:CDS 35.0%
! TTAGCACTAGTTTCCATGAA+AGG - chr8_3:58738092-58738111 None:intergenic 35.0%
!!! GTTTTTAATTTCAGCAGCCA+TGG - chr8_3:58738147-58738166 None:intergenic 35.0%
TGGCTGCTGAAATTAAAAAC+AGG + chr8_3:58738147-58738166 Msa1298100:CDS 35.0%
! CCATTCTGTGAAAAAAGTAC+CGG - chr8_3:58738296-58738315 None:intergenic 35.0%
TCTTAGAGACCAAGTATTCA+TGG + chr8_3:58738399-58738418 Msa1298100:exon 35.0%
!! CTTCTAAGACCATGAATACT+TGG - chr8_3:58738411-58738430 None:intergenic 35.0%
AAGAGATAAGTGAGCCAATA+CGG - chr8_3:58738657-58738676 None:intergenic 35.0%
!! TAAAATGACTCGCTTGGTGT+CGG - chr8_3:58734743-58734762 None:intergenic 40.0%
!! GGAGAAGTGTTAAGCAGAAA+AGG - chr8_3:58734940-58734959 None:intergenic 40.0%
TGCGCAGATCTAACTAAACA+AGG - chr8_3:58735027-58735046 None:intergenic 40.0%
GATAATGTAATCACGTGTGC+CGG + chr8_3:58735400-58735419 Msa1298100:intron 40.0%
! CTTATGAATGAAGGTGTGTC+TGG - chr8_3:58735452-58735471 None:intergenic 40.0%
!! TAGTTTGTTTCTTCCACGGT+TGG + chr8_3:58735532-58735551 Msa1298100:intron 40.0%
! TTTCTTCCACGGTTGGTATA+AGG + chr8_3:58735539-58735558 Msa1298100:intron 40.0%
! TTCTTCCACGGTTGGTATAA+GGG + chr8_3:58735540-58735559 Msa1298100:intron 40.0%
TGGTCCTCCCTAAAGTTAAT+AGG + chr8_3:58735626-58735645 Msa1298100:intron 40.0%
TAAAGCTAGTGAAGTCCATG+TGG + chr8_3:58735757-58735776 Msa1298100:intron 40.0%
AAAGCTAGTGAAGTCCATGT+GGG + chr8_3:58735758-58735777 Msa1298100:intron 40.0%
!! TCATGTTTTGCTGTCTACTG+TGG + chr8_3:58735936-58735955 Msa1298100:intron 40.0%
GAGAATGGCCATAGCAAAAT+GGG - chr8_3:58736352-58736371 None:intergenic 40.0%
AGAGAATGGCCATAGCAAAA+TGG - chr8_3:58736353-58736372 None:intergenic 40.0%
TTGCTATGGCCATTCTCTTT+AGG + chr8_3:58736355-58736374 Msa1298100:intron 40.0%
TTGATTGGAGATTCTGGTGT+GGG + chr8_3:58736463-58736482 Msa1298100:CDS 40.0%
TACATAGTGAGATTGTGAGC+AGG + chr8_3:58736699-58736718 Msa1298100:intron 40.0%
CAGAGTCACATCTCTATTTG+TGG + chr8_3:58736812-58736831 Msa1298100:intron 40.0%
!! TGGTACTGATATAGCTGTCA+AGG - chr8_3:58737007-58737026 None:intergenic 40.0%
GACAGCTATATCAGTACCAT+CGG + chr8_3:58737008-58737027 Msa1298100:CDS 40.0%
!! CAGTGCGGATTTTCTAAAGA+AGG - chr8_3:58737125-58737144 None:intergenic 40.0%
! CCAAGAACACAATTGGTAAC+TGG - chr8_3:58737453-58737472 None:intergenic 40.0%
CCAGTTACCAATTGTGTTCT+TGG + chr8_3:58737450-58737469 Msa1298100:intron 40.0%
! TTGAGCCGAAGTGTTTGAAA+AGG - chr8_3:58737538-58737557 None:intergenic 40.0%
AACACTTCGGCTCAATTATC+TGG + chr8_3:58737543-58737562 Msa1298100:intron 40.0%
ACACTTCGGCTCAATTATCT+GGG + chr8_3:58737544-58737563 Msa1298100:intron 40.0%
AGTAGCTGCTAGTTATAGTC+CGG - chr8_3:58737658-58737677 None:intergenic 40.0%
ATAACTAGCAGCTACTATCG+TGG + chr8_3:58737662-58737681 Msa1298100:CDS 40.0%
TAACTAGCAGCTACTATCGT+GGG + chr8_3:58737663-58737682 Msa1298100:CDS 40.0%
!! AATCACCTTTGCTGTTTCAG+AGG - chr8_3:58737937-58737956 None:intergenic 40.0%
TGGAAGTGGGACATGTATAT+GGG - chr8_3:58737980-58737999 None:intergenic 40.0%
! GTTTGTGCCTTTTGTACATC+AGG + chr8_3:58738043-58738062 Msa1298100:intron 40.0%
GCAAATGCCTGATGTACAAA+AGG - chr8_3:58738053-58738072 None:intergenic 40.0%
CAGGCATTTGCAGATGAAAT+TGG + chr8_3:58738062-58738081 Msa1298100:intron 40.0%
TGCTAAAAATGCCTCCAATG+TGG + chr8_3:58738106-58738125 Msa1298100:CDS 40.0%
! CATGAAAGCTTGTTCCACAT+TGG - chr8_3:58738123-58738142 None:intergenic 40.0%
CAATGTGGAACAAGCTTTCA+TGG + chr8_3:58738121-58738140 Msa1298100:CDS 40.0%
!!! CCGGTACTTTTTTCACAGAA+TGG + chr8_3:58738293-58738312 Msa1298100:intron 40.0%
TACTCAATAGCTTCCCGTAT+TGG + chr8_3:58738640-58738659 Msa1298100:three_prime_UTR 40.0%
AGAGATAAGTGAGCCAATAC+GGG - chr8_3:58738656-58738675 None:intergenic 40.0%
ATACGCATCAAGAAGGGAGT+GGG - chr8_3:58734716-58734735 None:intergenic 45.0%
TATACGCATCAAGAAGGGAG+TGG - chr8_3:58734717-58734736 None:intergenic 45.0%
! GGAGGTATACGCATCAAGAA+GGG - chr8_3:58734722-58734741 None:intergenic 45.0%
! TCTTTTCTTTATCCGGCGAC+CGG + chr8_3:58734814-58734833 Msa1298100:five_prime_UTR 45.0%
AGGTTGAATCGGAAAGGGAT+CGG - chr8_3:58734868-58734887 None:intergenic 45.0%
GTGAGAGGTTGAATCGGAAA+GGG - chr8_3:58734873-58734892 None:intergenic 45.0%
ATGACGGTGAGAGGTTGAAT+CGG - chr8_3:58734879-58734898 None:intergenic 45.0%
!! GAACTCTAAGGTCTCTGTGA+TGG + chr8_3:58735298-58735317 Msa1298100:intron 45.0%
! TCTTCCACGGTTGGTATAAG+GGG + chr8_3:58735541-58735560 Msa1298100:intron 45.0%
TGTACTGGGGAATCCTCTAA+TGG + chr8_3:58735718-58735737 Msa1298100:intron 45.0%
AGATTGCTTAACTAGTGCCC+CGG + chr8_3:58736206-58736225 Msa1298100:intron 45.0%
CAAAATGGGTGACTGTGACA+TGG - chr8_3:58736338-58736357 None:intergenic 45.0%
! CACAGTCACCCATTTTGCTA+TGG + chr8_3:58736341-58736360 Msa1298100:intron 45.0%
GTTGATTGGAGATTCTGGTG+TGG + chr8_3:58736462-58736481 Msa1298100:CDS 45.0%
AACTTACAGCAAACCTCAGG+AGG - chr8_3:58736501-58736520 None:intergenic 45.0%
CAGAACTTACAGCAAACCTC+AGG - chr8_3:58736504-58736523 None:intergenic 45.0%
ACTCTCTCACTTGACAGTCA+AGG + chr8_3:58736880-58736899 Msa1298100:intron 45.0%
CTATATCAGTACCATCGGAG+TGG + chr8_3:58737013-58737032 Msa1298100:CDS 45.0%
! TCGGCTCAATTATCTGGGAT+TGG + chr8_3:58737549-58737568 Msa1298100:intron 45.0%
! ATTGTATAGTGGGACACTGC+TGG + chr8_3:58737620-58737639 Msa1298100:intron 45.0%
AACTAGCAGCTACTATCGTG+GGG + chr8_3:58737664-58737683 Msa1298100:CDS 45.0%
TGGAAACAAGAGCGATCTCT+CGG + chr8_3:58737896-58737915 Msa1298100:CDS 45.0%
!! TGTGTCCTCTGAAACAGCAA+AGG + chr8_3:58737929-58737948 Msa1298100:CDS 45.0%
GGAAGTGGGACATGTATATG+GGG - chr8_3:58737979-58737998 None:intergenic 45.0%
CTGGAAGTGGGACATGTATA+TGG - chr8_3:58737981-58738000 None:intergenic 45.0%
! GAAAGCTTGTTCCACATTGG+AGG - chr8_3:58738120-58738139 None:intergenic 45.0%
TAACCTCATTTACTCGTCGC+CGG + chr8_3:58738274-58738293 Msa1298100:intron 45.0%
! TCACTGGTTGTCCTCGAATT+TGG - chr8_3:58738356-58738375 None:intergenic 45.0%
AGAAGTTCCATGTGTCTCTG+TGG + chr8_3:58738426-58738445 Msa1298100:three_prime_UTR 45.0%
TTACATGCCACAGAGACACA+TGG - chr8_3:58738436-58738455 None:intergenic 45.0%
GAGACGTATGCCAACCACTT+CGG - chr8_3:58734693-58734712 None:intergenic 50.0%
TACGCATCAAGAAGGGAGTG+GGG - chr8_3:58734715-58734734 None:intergenic 50.0%
! CGGAGGTATACGCATCAAGA+AGG - chr8_3:58734723-58734742 None:intergenic 50.0%
AAGAAGGGTTTGGCAGCGAA+GGG - chr8_3:58734845-58734864 None:intergenic 50.0%
AAGGGATCGGAAGAAGGGTT+TGG - chr8_3:58734855-58734874 None:intergenic 50.0%
TCGGAAAGGGATCGGAAGAA+GGG - chr8_3:58734860-58734879 None:intergenic 50.0%
ATCGGAAAGGGATCGGAAGA+AGG - chr8_3:58734861-58734880 None:intergenic 50.0%
GGTGAGAGGTTGAATCGGAA+AGG - chr8_3:58734874-58734893 None:intergenic 50.0%
TCAGGATTCATGACGGTGAG+AGG - chr8_3:58734888-58734907 None:intergenic 50.0%
!! GCGCATTCGTTGTTTTGCGA+TGG + chr8_3:58735042-58735061 Msa1298100:intron 50.0%
AGATCCCCTTATACCAACCG+TGG - chr8_3:58735548-58735567 None:intergenic 50.0%
TGGTTGCTTAACCAATGCCC+CGG - chr8_3:58736098-58736117 None:intergenic 50.0%
GATTGCTTAACTAGTGCCCC+GGG + chr8_3:58736207-58736226 Msa1298100:intron 50.0%
ATTGCTTAACTAGTGCCCCG+GGG + chr8_3:58736208-58736227 Msa1298100:intron 50.0%
TCTTGTTAACCAATGCCCCC+GGG - chr8_3:58736227-58736246 None:intergenic 50.0%
! GTCTTGTTAACCAATGCCCC+CGG - chr8_3:58736228-58736247 None:intergenic 50.0%
GCTTACAAAGTCCACTCCGA+TGG - chr8_3:58737027-58737046 None:intergenic 50.0%
GAAAATCCGCACTGTTGAGC+AGG + chr8_3:58737131-58737150 Msa1298100:intron 50.0%
CTGCTGGTCAAGAACGTTTC+CGG + chr8_3:58737636-58737655 Msa1298100:CDS 50.0%
GGAAATTGCTGACAAAGGGC+CGG - chr8_3:58737719-58737738 None:intergenic 50.0%
GGAACAAGCTTTCATGGCCA+TGG + chr8_3:58738127-58738146 Msa1298100:CDS 50.0%
AATTTGGACTGTTGCAGGCC+TGG - chr8_3:58738340-58738359 None:intergenic 50.0%
CCTCGAATTTGGACTGTTGC+AGG - chr8_3:58738345-58738364 None:intergenic 50.0%
CCTGCAACAGTCCAAATTCG+AGG + chr8_3:58738342-58738361 Msa1298100:CDS 50.0%
AGGACAACCAGTGAACCAGA+AGG + chr8_3:58738362-58738381 Msa1298100:CDS 50.0%
! TGTGTTTGGGGCAACGAACA+AGG - chr8_3:58738612-58738631 None:intergenic 50.0%
!! AATGACTCGCTTGGTGTCGG+AGG - chr8_3:58734740-58734759 None:intergenic 55.0%
TTGGCAGCGAAGGGAGTTAC+CGG - chr8_3:58734836-58734855 None:intergenic 55.0%
GAAGAAGGGTTTGGCAGCGA+AGG - chr8_3:58734846-58734865 None:intergenic 55.0%
! GTAATCACGTGTGCCGGTGT+CGG + chr8_3:58735406-58735425 Msa1298100:intron 55.0%
GTCTGGTGTCCTACACATGC+CGG - chr8_3:58735435-58735454 None:intergenic 55.0%
AGAATGTTAACCCGTGCCCC+CGG + chr8_3:58736076-58736095 Msa1298100:intron 55.0%
TTGCTTAACCAATGCCCCGG+GGG - chr8_3:58736095-58736114 None:intergenic 55.0%
GTTGCTTAACCAATGCCCCG+GGG - chr8_3:58736096-58736115 None:intergenic 55.0%
GGTTGCTTAACCAATGCCCC+GGG - chr8_3:58736097-58736116 None:intergenic 55.0%
TTGCTTAACTAGTGCCCCGG+GGG + chr8_3:58736209-58736228 Msa1298100:intron 55.0%
CTTGTTAACCAATGCCCCCG+GGG - chr8_3:58736226-58736245 None:intergenic 55.0%
GCAAGTCATGTCTCCTCCTG+AGG + chr8_3:58736485-58736504 Msa1298100:CDS 55.0%
ATCCGCACTGTTGAGCAGGA+TGG + chr8_3:58737135-58737154 Msa1298100:CDS 55.0%
TCCGCACTGTTGAGCAGGAT+GGG + chr8_3:58737136-58737155 Msa1298100:CDS 55.0%
TCCCATCCTGCTCAACAGTG+CGG - chr8_3:58737140-58737159 None:intergenic 55.0%
AGCTACTATCGTGGGGCTCA+TGG + chr8_3:58737671-58737690 Msa1298100:CDS 55.0%
! GTACCGGCGACGAGTAAATG+AGG - chr8_3:58738280-58738299 None:intergenic 55.0%
CAACCAGTGAACCAGAAGGC+TGG + chr8_3:58738366-58738385 Msa1298100:CDS 55.0%
!! CAACCAGCCTTCTGGTTCAC+TGG - chr8_3:58738372-58738391 None:intergenic 55.0%
TGTCGGACACCGGCATGTGT+AGG + chr8_3:58735423-58735442 Msa1298100:intron 60.0%
GAATGTTAACCCGTGCCCCC+GGG + chr8_3:58736077-58736096 Msa1298100:intron 60.0%
AATGTTAACCCGTGCCCCCG+GGG + chr8_3:58736078-58736097 Msa1298100:intron 60.0%
GTCAACCTGCCAACAGTGCC+AGG + chr8_3:58738319-58738338 Msa1298100:CDS 60.0%
TGTTGCAGGCCTGGCACTGT+TGG - chr8_3:58738331-58738350 None:intergenic 60.0%
ACGAGCAGCAACCAGCCTTC+TGG - chr8_3:58738380-58738399 None:intergenic 60.0%
CGAAGGGAGTTACCGGTCGC+CGG - chr8_3:58734829-58734848 None:intergenic 65.0%
CACATGCCGGTGTCCGACAC+CGG - chr8_3:58735422-58735441 None:intergenic 65.0%
TAACCAATGCCCCGGGGGCA+CGG - chr8_3:58736090-58736109 None:intergenic 65.0%
! AACTAGTGCCCCGGGGGCAT+TGG + chr8_3:58736215-58736234 Msa1298100:intron 65.0%
! CGTGTGCCGGTGTCGGACAC+CGG + chr8_3:58735413-58735432 Msa1298100:intron 70.0%
! AACCAATGCCCCGGGGGCAC+GGG - chr8_3:58736089-58736108 None:intergenic 70.0%
GCAGGCCTGGCACTGTTGGC+AGG - chr8_3:58738327-58738346 None:intergenic 70.0%
AACCCGTGCCCCCGGGGCAT+TGG + chr8_3:58736084-58736103 Msa1298100:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58734684 58738755 58734684 ID=Msa1298100;Name=Msa1298100
chr8_3 mRNA 58734684 58738755 58734684 ID=Msa1298100-mRNA-1;Parent=Msa1298100;Name=Msa1298100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=213|1|1|1|1|1|8|351|202
chr8_3 exon 58734684 58734910 58734684 ID=Msa1298100-mRNA-1:exon:16862;Parent=Msa1298100-mRNA-1
chr8_3 exon 58736441 58736513 58736441 ID=Msa1298100-mRNA-1:exon:16863;Parent=Msa1298100-mRNA-1
chr8_3 exon 58736993 58737040 58736993 ID=Msa1298100-mRNA-1:exon:16864;Parent=Msa1298100-mRNA-1
chr8_3 exon 58737132 58737179 58737132 ID=Msa1298100-mRNA-1:exon:16865;Parent=Msa1298100-mRNA-1
chr8_3 exon 58737629 58737700 58737629 ID=Msa1298100-mRNA-1:exon:16866;Parent=Msa1298100-mRNA-1
chr8_3 exon 58737795 58737950 58737795 ID=Msa1298100-mRNA-1:exon:16867;Parent=Msa1298100-mRNA-1
chr8_3 exon 58738065 58738168 58738065 ID=Msa1298100-mRNA-1:exon:16868;Parent=Msa1298100-mRNA-1
chr8_3 exon 58738311 58738755 58738311 ID=Msa1298100-mRNA-1:exon:16869;Parent=Msa1298100-mRNA-1
chr8_3 five_prime_UTR 58734684 58734896 58734684 ID=Msa1298100-mRNA-1:five_prime_utr;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58734897 58734910 58734897 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58736441 58736513 58736441 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58736993 58737040 58736993 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58737132 58737179 58737132 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58737629 58737700 58737629 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58737795 58737950 58737795 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58738065 58738168 58738065 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 CDS 58738311 58738404 58738311 ID=Msa1298100-mRNA-1:cds;Parent=Msa1298100-mRNA-1
chr8_3 three_prime_UTR 58738405 58738755 58738405 ID=Msa1298100-mRNA-1:three_prime_utr;Parent=Msa1298100-mRNA-1
Gene Sequence

>Msa1298100

ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGTTGATTGGAGATTCTGGTGTGGGCAAGTCATGTCTCCTCCTGAGGTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATCGGAGTGGACTTTAAAATCCGCACTGTTGAGCAGGATGGGAAGACCATTAAACTTCAAATTTGGGACACTGCTGGTCAAGAACGTTTCCGGACTATAACTAGCAGCTACTATCGTGGGGCTCATGGCATAATTGTTGTTTACGATGTCACTGACCAAGAGAGCTTTAACAATGTTAAGCAGTGGCTGAATGAAATTGACCGCTATGCAAGTGAAAATGTTAACAAGCTTCTAGTTGGAAACAAGAGCGATCTCTCGGACAAAAAAGTTGTGTCCTCTGAAACAGCAAAGGCATTTGCAGATGAAATTGGAATTCCTTTCATGGAAACTAGTGCTAAAAATGCCTCCAATGTGGAACAAGCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCGAGTCAACCTGCCAACAGTGCCAGGCCTGCAACAGTCCAAATTCGAGGACAACCAGTGAACCAGAAGGCTGGTTGCTGCTCGTCTTAG

Protein sequence

>Msa1298100

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLSDKKVVSSETAKAFADEIGIPFMETSAKNASNVEQAFMAMAAEIKNRMASQPANSARPATVQIRGQPVNQKAGCCSS*