Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532920 | XP_003604660.1 | 93.333 | 390 | 18 | 4 | 1 | 387 | 1 | 385 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532920 | G7JN31 | 93.333 | 390 | 18 | 4 | 1 | 387 | 1 | 385 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0389400 | Msa0532920 | 0.925905 | 9.720399e-91 | -8.615850e-47 |
| Msa0532920 | Msa0624950 | 0.940841 | 1.168951e-100 | -8.615850e-47 |
| Msa0532920 | Msa0667720 | 0.886254 | 4.013673e-72 | -8.615850e-47 |
| Msa0532920 | Msa0965290 | 0.801370 | 9.298955e-49 | -8.615850e-47 |
| Msa0532920 | Msa1340200 | 0.808394 | 3.164304e-50 | -8.615850e-47 |
| Msa0532920 | Msa1420640 | 0.947485 | 6.140304e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532920 | MtrunA17_Chr4g0006251 | 93.333 | 390 | 18 | 4 | 1 | 387 | 1 | 385 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTAACTGATTTACTTCT+TGG | 0.222003 | 4_1:-7496361 | None:intergenic |
| TTCTTTGGTGACACATTCTT+TGG | 0.227592 | 4_1:-7496868 | None:intergenic |
| AGGTGTAATTGTAGTTATTA+TGG | 0.236281 | 4_1:+7496730 | Msa0532920:CDS |
| TGTTCTGTCTGAATCTTCTT+TGG | 0.263057 | 4_1:-7496883 | None:intergenic |
| GATGAAAATGGAACCCTTCT+TGG | 0.264237 | 4_1:-7496640 | None:intergenic |
| CTTTGACAGAAGAAAGTATA+AGG | 0.276142 | 4_1:+7498170 | Msa0532920:CDS |
| GTTAAGAAGGAGAAGAATAA+AGG | 0.294047 | 4_1:+7496583 | Msa0532920:CDS |
| CCTTGCCTTTAAAGTCAAAA+AGG | 0.298670 | 4_1:+7498011 | Msa0532920:CDS |
| CAACTTCTTCATTGCCTACT+AGG | 0.319844 | 4_1:+7496788 | Msa0532920:CDS |
| ACTTCTTGGAACAGAATCTA+AGG | 0.322435 | 4_1:-7496347 | None:intergenic |
| TGTTCCTTTAACAACCCTTT+TGG | 0.323978 | 4_1:-7496323 | None:intergenic |
| AGCACCAAAAGGGTTGTTAA+AGG | 0.333890 | 4_1:+7496319 | Msa0532920:CDS |
| TGGTGTAGTAGCAAGGTTAA+TGG | 0.335546 | 4_1:+7496279 | Msa0532920:CDS |
| AATTGTAGTTATTATGGATA+TGG | 0.346675 | 4_1:+7496736 | Msa0532920:CDS |
| ATCAAAGACTGAAAGCTTAG+AGG | 0.361130 | 4_1:+7498207 | Msa0532920:CDS |
| GGTGTAGTAGCAAGGTTAAT+GGG | 0.365165 | 4_1:+7496280 | Msa0532920:CDS |
| CTAGAAACTTTCACTTAGAA+AGG | 0.367690 | 4_1:-7495884 | None:intergenic |
| TTAAGAAGGAGAAGAATAAA+GGG | 0.377122 | 4_1:+7496584 | Msa0532920:CDS |
| AAACAAGAAAATTCAAGAAA+TGG | 0.379420 | 4_1:+7496124 | Msa0532920:CDS |
| TACTTGGAAGAAGATGAAAA+TGG | 0.380603 | 4_1:-7496652 | None:intergenic |
| GAGAAAGTAAACAATAATAA+AGG | 0.383541 | 4_1:+7498079 | Msa0532920:CDS |
| AAGCTTAGAGGAAATTTGTT+TGG | 0.383976 | 4_1:+7498219 | Msa0532920:CDS |
| ATCTTTATTGCCAGTGTCCT+TGG | 0.392267 | 4_1:+7498042 | Msa0532920:CDS |
| TTCTCTGTTGATGTCAGTGT+GGG | 0.417009 | 4_1:-7498110 | None:intergenic |
| GGAAATTGTGAGAGTTAAGA+AGG | 0.438622 | 4_1:+7496570 | Msa0532920:CDS |
| CTTCTTCCAAGTATAAATCA+AGG | 0.448989 | 4_1:+7496662 | Msa0532920:CDS |
| TTGACATCTAGAACTGAAAC+AGG | 0.458423 | 4_1:-7496925 | None:intergenic |
| CTCTTCAACATCTTCTTCCA+AGG | 0.463668 | 4_1:-7498059 | None:intergenic |
| GATGATTCTATTACTACTCC+TGG | 0.467242 | 4_1:+7496259 | Msa0532920:CDS |
| TCTAACCCTTGATTTATACT+TGG | 0.472162 | 4_1:-7496668 | None:intergenic |
| TATTATGGATATGGTAATGC+TGG | 0.473019 | 4_1:+7496745 | Msa0532920:CDS |
| TTGCCTACTAGGCAAAAGAA+AGG | 0.483545 | 4_1:+7496799 | Msa0532920:CDS |
| ATTCACTTCCAAGCACCAAA+AGG | 0.486866 | 4_1:+7496308 | Msa0532920:CDS |
| TTCACTTCCAAGCACCAAAA+GGG | 0.495119 | 4_1:+7496309 | Msa0532920:CDS |
| CAAGTTCTAATCTTTCATCA+TGG | 0.501427 | 4_1:+7496099 | Msa0532920:exon |
| GCTTGAGTTTGATCAAAACA+TGG | 0.523774 | 4_1:+7496396 | Msa0532920:CDS |
| TTTGACAGAAGAAAGTATAA+GGG | 0.526153 | 4_1:+7498171 | Msa0532920:CDS |
| TGCCTACTAGGCAAAAGAAA+GGG | 0.548532 | 4_1:+7496800 | Msa0532920:CDS |
| AGAACTTGATATTTGTGTGA+TGG | 0.550194 | 4_1:-7496084 | None:intergenic |
| AGTTAAAAGATGAACCAAGA+AGG | 0.554790 | 4_1:+7496626 | Msa0532920:CDS |
| ATATGCTTTATAGACAAAGA+AGG | 0.560217 | 4_1:-7498321 | None:intergenic |
| CTTGAGTTTGATCAAAACAT+GGG | 0.565956 | 4_1:+7496397 | Msa0532920:CDS |
| CTTCTCTGTTGATGTCAGTG+TGG | 0.574065 | 4_1:-7498111 | None:intergenic |
| GTTAAAAGATGAACCAAGAA+GGG | 0.583184 | 4_1:+7496627 | Msa0532920:CDS |
| GATTCAGACAGAACATAGCA+TGG | 0.587606 | 4_1:+7496891 | Msa0532920:CDS |
| ACATCTTCTTCCAAGGACAC+TGG | 0.590378 | 4_1:-7498052 | None:intergenic |
| TTCTTCCAAGTATAAATCAA+GGG | 0.598400 | 4_1:+7496663 | Msa0532920:CDS |
| CTACTCCTGGTGTAGTAGCA+AGG | 0.604802 | 4_1:+7496272 | Msa0532920:CDS |
| AAACTTGAGAATAAAGAGCA+AGG | 0.615672 | 4_1:+7496549 | Msa0532920:CDS |
| ATTAACCTTGCTACTACACC+AGG | 0.623143 | 4_1:-7496277 | None:intergenic |
| GTGTAGTAGCAAGGTTAATG+GGG | 0.625800 | 4_1:+7496281 | Msa0532920:CDS |
| TCTCTGTTGATGTCAGTGTG+GGG | 0.670330 | 4_1:-7498109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTGATTTAATATTTTTAA+TGG | + | chr4_1:7497156-7497175 | Msa0532920:intron | 10.0% |
| !! | AAATATTAAATGATCAAAAA+TGG | - | chr4_1:7498257-7498276 | None:intergenic | 10.0% |
| !!! | TTGAAAATTTTTAAGATAAG+GGG | - | chr4_1:7496064-7496083 | None:intergenic | 15.0% |
| !!! | GTTGAAAATTTTTAAGATAA+GGG | - | chr4_1:7496065-7496084 | None:intergenic | 15.0% |
| !! | AAAATAAAAATTAGCAACAA+GGG | - | chr4_1:7497001-7497020 | None:intergenic | 15.0% |
| !! | AAAAATAAAAATTAGCAACA+AGG | - | chr4_1:7497002-7497021 | None:intergenic | 15.0% |
| !!! | AATTCATTCCAAAATATTTT+AGG | - | chr4_1:7497106-7497125 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAAACATTGAG+AGG | - | chr4_1:7497363-7497382 | None:intergenic | 15.0% |
| !!! | TAAAAATAATTTTTAGAGTG+AGG | + | chr4_1:7497485-7497504 | Msa0532920:intron | 15.0% |
| !!! | TTAACTTTAAAAGAAAAAAG+AGG | + | chr4_1:7497627-7497646 | Msa0532920:intron | 15.0% |
| !!! | TGATGATTGAAAATTTTAAG+GGG | - | chr4_1:7495944-7495963 | None:intergenic | 20.0% |
| !!! | GTGATGATTGAAAATTTTAA+GGG | - | chr4_1:7495945-7495964 | None:intergenic | 20.0% |
| !!! | TGTGATGATTGAAAATTTTA+AGG | - | chr4_1:7495946-7495965 | None:intergenic | 20.0% |
| !!! | GGTTGAAAATTTTTAAGATA+AGG | - | chr4_1:7496066-7496085 | None:intergenic | 20.0% |
| !! | AAACAAGAAAATTCAAGAAA+TGG | + | chr4_1:7496124-7496143 | Msa0532920:CDS | 20.0% |
| !!! | CTTGATATTGATGATAAAAA+AGG | + | chr4_1:7496502-7496521 | Msa0532920:CDS | 20.0% |
| !!! | TATTGATGATAAAAAAGGTA+AGG | + | chr4_1:7496507-7496526 | Msa0532920:CDS | 20.0% |
| !! | AATTGTAGTTATTATGGATA+TGG | + | chr4_1:7496736-7496755 | Msa0532920:CDS | 20.0% |
| !! | TTGTGAATTACTTATTTACA+AGG | + | chr4_1:7497042-7497061 | Msa0532920:intron | 20.0% |
| !!! | ATTCCAAAATATTTTAGGTT+CGG | - | chr4_1:7497101-7497120 | None:intergenic | 20.0% |
| !!! | AAATGCATTTTTAATCAAAC+AGG | - | chr4_1:7497915-7497934 | None:intergenic | 20.0% |
| !! | TAACTGTAATCAAATATTGA+GGG | - | chr4_1:7497985-7498004 | None:intergenic | 20.0% |
| !! | GAGAAAGTAAACAATAATAA+AGG | + | chr4_1:7498079-7498098 | Msa0532920:CDS | 20.0% |
| !!! | GATGATTGAAAATTTTAAGG+GGG | - | chr4_1:7495943-7495962 | None:intergenic | 25.0% |
| !! | ACATTTTCAGATGGATATAT+TGG | - | chr4_1:7496205-7496224 | None:intergenic | 25.0% |
| !! | ATTGTTTCAACATTTTCAGA+TGG | - | chr4_1:7496214-7496233 | None:intergenic | 25.0% |
| !! | AAGTTAACTGATTTACTTCT+TGG | - | chr4_1:7496364-7496383 | None:intergenic | 25.0% |
| ! | TTAAGAAGGAGAAGAATAAA+GGG | + | chr4_1:7496584-7496603 | Msa0532920:CDS | 25.0% |
| ! | TTCTTCCAAGTATAAATCAA+GGG | + | chr4_1:7496663-7496682 | Msa0532920:CDS | 25.0% |
| !!! | ATTTTTCAAGTGTTTCTACA+AGG | + | chr4_1:7496710-7496729 | Msa0532920:CDS | 25.0% |
| ! | AGGTGTAATTGTAGTTATTA+TGG | + | chr4_1:7496730-7496749 | Msa0532920:CDS | 25.0% |
| !! | AATGATTATGCTTTTCTCTA+TGG | + | chr4_1:7496946-7496965 | Msa0532920:CDS | 25.0% |
| ! | AAGTAATTCACAAACTAGAA+TGG | - | chr4_1:7497035-7497054 | None:intergenic | 25.0% |
| ! | GAATTACTTATTTACAAGGT+TGG | + | chr4_1:7497046-7497065 | Msa0532920:intron | 25.0% |
| !! | TTTCCGAACCTAAAATATTT+TGG | + | chr4_1:7497095-7497114 | Msa0532920:intron | 25.0% |
| !! | TTCTAACAATTTAGAGTCAT+TGG | + | chr4_1:7497211-7497230 | Msa0532920:intron | 25.0% |
| !! | TCTAACAATTTAGAGTCATT+GGG | + | chr4_1:7497212-7497231 | Msa0532920:intron | 25.0% |
| !! | ATGAATTGTGACTTTTGTAT+TGG | + | chr4_1:7497331-7497350 | Msa0532920:intron | 25.0% |
| ! | GTTGCGTATATAGTAAATTA+AGG | - | chr4_1:7497453-7497472 | None:intergenic | 25.0% |
| !! | TTTAGAGTGAGGAAATATTT+AGG | + | chr4_1:7497496-7497515 | Msa0532920:intron | 25.0% |
| ! | TTAGAGTGAGGAAATATTTA+GGG | + | chr4_1:7497497-7497516 | Msa0532920:intron | 25.0% |
| ! | TTTAAAAATATGAAGGACCT+TGG | - | chr4_1:7497577-7497596 | None:intergenic | 25.0% |
| ! | AAAGAGGAAACAAACATATA+CGG | + | chr4_1:7497643-7497662 | Msa0532920:intron | 25.0% |
| ! | GTAACTGTAATCAAATATTG+AGG | - | chr4_1:7497986-7498005 | None:intergenic | 25.0% |
| !!! | GATTTCCTTTTTGACTTTAA+AGG | - | chr4_1:7498019-7498038 | None:intergenic | 25.0% |
| !! | TTTGACAGAAGAAAGTATAA+GGG | + | chr4_1:7498171-7498190 | Msa0532920:CDS | 25.0% |
| ! | ATATGCTTTATAGACAAAGA+AGG | - | chr4_1:7498324-7498343 | None:intergenic | 25.0% |
| CTAGAAACTTTCACTTAGAA+AGG | - | chr4_1:7495887-7495906 | None:intergenic | 30.0% | |
| !! | TGTGATGAAGCTTTTTCTTT+TGG | - | chr4_1:7495920-7495939 | None:intergenic | 30.0% |
| AGAACTTGATATTTGTGTGA+TGG | - | chr4_1:7496087-7496106 | None:intergenic | 30.0% | |
| ! | CAAGTTCTAATCTTTCATCA+TGG | + | chr4_1:7496099-7496118 | Msa0532920:exon | 30.0% |
| ! | TTTTCAGATGGATATATTGG+TGG | - | chr4_1:7496202-7496221 | None:intergenic | 30.0% |
| CTTGAGTTTGATCAAAACAT+GGG | + | chr4_1:7496397-7496416 | Msa0532920:CDS | 30.0% | |
| !! | TTTTAGAGAAGTTCCTTCAA+TGG | + | chr4_1:7496450-7496469 | Msa0532920:CDS | 30.0% |
| ! | TTTTGCTTATCAACCATTGA+AGG | - | chr4_1:7496466-7496485 | None:intergenic | 30.0% |
| AAACTTGAGAATAAAGAGCA+AGG | + | chr4_1:7496549-7496568 | Msa0532920:CDS | 30.0% | |
| GTTAAGAAGGAGAAGAATAA+AGG | + | chr4_1:7496583-7496602 | Msa0532920:CDS | 30.0% | |
| AGTTAAAAGATGAACCAAGA+AGG | + | chr4_1:7496626-7496645 | Msa0532920:CDS | 30.0% | |
| GTTAAAAGATGAACCAAGAA+GGG | + | chr4_1:7496627-7496646 | Msa0532920:CDS | 30.0% | |
| TACTTGGAAGAAGATGAAAA+TGG | - | chr4_1:7496655-7496674 | None:intergenic | 30.0% | |
| CTTCTTCCAAGTATAAATCA+AGG | + | chr4_1:7496662-7496681 | Msa0532920:CDS | 30.0% | |
| TCTAACCCTTGATTTATACT+TGG | - | chr4_1:7496671-7496690 | None:intergenic | 30.0% | |
| ! | TATTATGGATATGGTAATGC+TGG | + | chr4_1:7496745-7496764 | Msa0532920:CDS | 30.0% |
| ! | TTAGCATCTAGAACTTTCAA+TGG | + | chr4_1:7497129-7497148 | Msa0532920:intron | 30.0% |
| TAGAGTGAGGAAATATTTAG+GGG | + | chr4_1:7497498-7497517 | Msa0532920:intron | 30.0% | |
| ! | CTTTGACAGAAGAAAGTATA+AGG | + | chr4_1:7498170-7498189 | Msa0532920:CDS | 30.0% |
| ! | AAGCTTAGAGGAAATTTGTT+TGG | + | chr4_1:7498219-7498238 | Msa0532920:CDS | 30.0% |
| !!! | GGTTTTAGAACTTGCAATGT+GGG | - | chr4_1:7495866-7495885 | None:intergenic | 35.0% |
| !!! | AGGTTTTAGAACTTGCAATG+TGG | - | chr4_1:7495867-7495886 | None:intergenic | 35.0% |
| GATGATTCTATTACTACTCC+TGG | + | chr4_1:7496259-7496278 | Msa0532920:CDS | 35.0% | |
| ! | TGTTCCTTTAACAACCCTTT+TGG | - | chr4_1:7496326-7496345 | None:intergenic | 35.0% |
| ACTTCTTGGAACAGAATCTA+AGG | - | chr4_1:7496350-7496369 | None:intergenic | 35.0% | |
| GCTTGAGTTTGATCAAAACA+TGG | + | chr4_1:7496396-7496415 | Msa0532920:CDS | 35.0% | |
| GGAAATTGTGAGAGTTAAGA+AGG | + | chr4_1:7496570-7496589 | Msa0532920:CDS | 35.0% | |
| !! | GGTTTGTTGAACCAAAAATG+AGG | + | chr4_1:7496821-7496840 | Msa0532920:CDS | 35.0% |
| TGAACCAAAAATGAGGAACA+AGG | + | chr4_1:7496828-7496847 | Msa0532920:CDS | 35.0% | |
| ! | TTCACCTTGTTCCTCATTTT+TGG | - | chr4_1:7496835-7496854 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGACACATTCTT+TGG | - | chr4_1:7496871-7496890 | None:intergenic | 35.0% |
| TGTTCTGTCTGAATCTTCTT+TGG | - | chr4_1:7496886-7496905 | None:intergenic | 35.0% | |
| ! | TTGACATCTAGAACTGAAAC+AGG | - | chr4_1:7496928-7496947 | None:intergenic | 35.0% |
| ! | TCCTTACACAACTTGTTTAC+TGG | + | chr4_1:7497250-7497269 | Msa0532920:intron | 35.0% |
| ACCAGTAAACAAGTTGTGTA+AGG | - | chr4_1:7497254-7497273 | None:intergenic | 35.0% | |
| ! | TTACACAACTTGTTTACTGG+TGG | + | chr4_1:7497253-7497272 | Msa0532920:intron | 35.0% |
| AGAGTGAGGAAATATTTAGG+GGG | + | chr4_1:7497499-7497518 | Msa0532920:intron | 35.0% | |
| CAATGTTGCTCTTTGTAAGA+AGG | - | chr4_1:7497769-7497788 | None:intergenic | 35.0% | |
| !!! | CCTTTTTGACTTTAAAGGCA+AGG | - | chr4_1:7498014-7498033 | None:intergenic | 35.0% |
| !! | CCTTGCCTTTAAAGTCAAAA+AGG | + | chr4_1:7498011-7498030 | Msa0532920:CDS | 35.0% |
| ATCAAAGACTGAAAGCTTAG+AGG | + | chr4_1:7498207-7498226 | Msa0532920:CDS | 35.0% | |
| ATTAACCTTGCTACTACACC+AGG | - | chr4_1:7496280-7496299 | None:intergenic | 40.0% | |
| TGGTGTAGTAGCAAGGTTAA+TGG | + | chr4_1:7496279-7496298 | Msa0532920:CDS | 40.0% | |
| GGTGTAGTAGCAAGGTTAAT+GGG | + | chr4_1:7496280-7496299 | Msa0532920:CDS | 40.0% | |
| GTGTAGTAGCAAGGTTAATG+GGG | + | chr4_1:7496281-7496300 | Msa0532920:CDS | 40.0% | |
| ATTCACTTCCAAGCACCAAA+AGG | + | chr4_1:7496308-7496327 | Msa0532920:CDS | 40.0% | |
| TTCACTTCCAAGCACCAAAA+GGG | + | chr4_1:7496309-7496328 | Msa0532920:CDS | 40.0% | |
| !!! | TTAACAACCCTTTTGGTGCT+TGG | - | chr4_1:7496319-7496338 | None:intergenic | 40.0% |
| AGCACCAAAAGGGTTGTTAA+AGG | + | chr4_1:7496319-7496338 | Msa0532920:CDS | 40.0% | |
| ! | ATGCTGAAGTTTTCACACGT+CGG | - | chr4_1:7496429-7496448 | None:intergenic | 40.0% |
| GATGAAAATGGAACCCTTCT+TGG | - | chr4_1:7496643-7496662 | None:intergenic | 40.0% | |
| CAACTTCTTCATTGCCTACT+AGG | + | chr4_1:7496788-7496807 | Msa0532920:CDS | 40.0% | |
| TTGCCTACTAGGCAAAAGAA+AGG | + | chr4_1:7496799-7496818 | Msa0532920:CDS | 40.0% | |
| TGCCTACTAGGCAAAAGAAA+GGG | + | chr4_1:7496800-7496819 | Msa0532920:CDS | 40.0% | |
| ! | AACCCTTTCTTTTGCCTAGT+AGG | - | chr4_1:7496805-7496824 | None:intergenic | 40.0% |
| GATTCAGACAGAACATAGCA+TGG | + | chr4_1:7496891-7496910 | Msa0532920:CDS | 40.0% | |
| !! | CTCTATGGAGCTGATTTTTC+AGG | + | chr4_1:7496961-7496980 | Msa0532920:CDS | 40.0% |
| ATCTTTATTGCCAGTGTCCT+TGG | + | chr4_1:7498042-7498061 | Msa0532920:CDS | 40.0% | |
| CTCTTCAACATCTTCTTCCA+AGG | - | chr4_1:7498062-7498081 | None:intergenic | 40.0% | |
| TTCTCTGTTGATGTCAGTGT+GGG | - | chr4_1:7498113-7498132 | None:intergenic | 40.0% | |
| GTGAGGAAATATTTAGGGGG+CGG | + | chr4_1:7497502-7497521 | Msa0532920:intron | 45.0% | |
| AAGGACCTTGGACTTCTACT+TGG | - | chr4_1:7497565-7497584 | None:intergenic | 45.0% | |
| ACATCTTCTTCCAAGGACAC+TGG | - | chr4_1:7498055-7498074 | None:intergenic | 45.0% | |
| TCTCTGTTGATGTCAGTGTG+GGG | - | chr4_1:7498112-7498131 | None:intergenic | 45.0% | |
| CTTCTCTGTTGATGTCAGTG+TGG | - | chr4_1:7498114-7498133 | None:intergenic | 45.0% | |
| !!! | TTTTAAATTTAAAAATATGA+AGG | - | chr4_1:7497584-7497603 | None:intergenic | 5.0% |
| CTACTCCTGGTGTAGTAGCA+AGG | + | chr4_1:7496272-7496291 | Msa0532920:CDS | 50.0% | |
| CGTCACCAAGTAGAAGTCCA+AGG | + | chr4_1:7497557-7497576 | Msa0532920:intron | 50.0% | |
| GACAGTGACTCGTGCGATGT+CGG | - | chr4_1:7497699-7497718 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 7495846 | 7498418 | 7495846 | ID=Msa0532920;Name=Msa0532920 |
| chr4_1 | mRNA | 7495846 | 7498418 | 7495846 | ID=Msa0532920-mRNA-1;Parent=Msa0532920;Name=Msa0532920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=272|1|1|1|1|1|2|118|387 |
| chr4_1 | exon | 7495846 | 7496982 | 7495846 | ID=Msa0532920-mRNA-1:exon:2608;Parent=Msa0532920-mRNA-1 |
| chr4_1 | exon | 7498002 | 7498418 | 7498002 | ID=Msa0532920-mRNA-1:exon:2609;Parent=Msa0532920-mRNA-1 |
| chr4_1 | five_prime_UTR | 7495846 | 7496117 | 7495846 | ID=Msa0532920-mRNA-1:five_prime_utr;Parent=Msa0532920-mRNA-1 |
| chr4_1 | CDS | 7496118 | 7496982 | 7496118 | ID=Msa0532920-mRNA-1:cds;Parent=Msa0532920-mRNA-1 |
| chr4_1 | CDS | 7498002 | 7498300 | 7498002 | ID=Msa0532920-mRNA-1:cds;Parent=Msa0532920-mRNA-1 |
| chr4_1 | three_prime_UTR | 7498301 | 7498418 | 7498301 | ID=Msa0532920-mRNA-1:three_prime_utr;Parent=Msa0532920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
