Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667720 | XP_003604660.1 | 93.077 | 390 | 19 | 4 | 1 | 387 | 1 | 385 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667720 | G7JN31 | 93.077 | 390 | 19 | 4 | 1 | 387 | 1 | 385 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0624950 | Msa0667720 | 0.901415 | 2.741909e-78 | -8.615850e-47 |
| Msa0667720 | Msa0965290 | 0.807842 | 4.147591e-50 | -8.615850e-47 |
| Msa0667720 | Msa0999680 | 0.804822 | 1.796012e-49 | -8.615850e-47 |
| Msa0667720 | Msa1236440 | 0.824401 | 8.234924e-54 | -8.615850e-47 |
| Msa0667720 | Msa1277670 | 0.820923 | 5.306150e-53 | -8.615850e-47 |
| Msa0667720 | Msa1420640 | 0.899838 | 1.332304e-77 | -8.615850e-47 |
| Msa0389400 | Msa0667720 | 0.880667 | 4.545026e-70 | -8.615850e-47 |
| Msa0532920 | Msa0667720 | 0.886254 | 4.013673e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667720 | MtrunA17_Chr4g0006251 | 93.077 | 390 | 19 | 4 | 1 | 387 | 1 | 385 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTTTCTTTGGCCTATT+AGG | 0.206928 | 4_4:-8305483 | None:intergenic |
| AAGTTAACTGATTTACTTCT+TGG | 0.222003 | 4_4:-8305042 | None:intergenic |
| TTCTTTGGTGACACATTCTT+TGG | 0.227592 | 4_4:-8305549 | None:intergenic |
| AGGTGTAATTGTAGTTATTA+TGG | 0.236281 | 4_4:+8305411 | Msa0667720:CDS |
| CAACTTCTTCATTGCCTAAT+AGG | 0.237463 | 4_4:+8305469 | Msa0667720:CDS |
| TGTTCTGTCTGAATCTTCTT+TGG | 0.263057 | 4_4:-8305564 | None:intergenic |
| GATGAAAATGGAACCCTTCT+TGG | 0.264237 | 4_4:-8305321 | None:intergenic |
| CTTTGACAGAAGAAAGTATA+AGG | 0.276142 | 4_4:+8307056 | Msa0667720:CDS |
| GGTTCAACAAAACCTTTCTT+TGG | 0.286655 | 4_4:-8305492 | None:intergenic |
| CTCTAAGCTTTCAGTCTTTG+AGG | 0.287130 | 4_4:-8307092 | None:intergenic |
| ATTTAGTGTTATATTGTATT+GGG | 0.297084 | 4_4:+8307343 | Msa0667720:three_prime_UTR |
| CCTTGCCTTTAAAGTCAAAA+AGG | 0.298670 | 4_4:+8306897 | Msa0667720:CDS |
| TTAAGACCTCAAATATTAAA+TGG | 0.301778 | 4_4:-8307150 | None:intergenic |
| TACTTAGAAGAAGATGAAAA+TGG | 0.318264 | 4_4:-8305333 | None:intergenic |
| TAAGAAAAGTGTATAAATAA+AGG | 0.319790 | 4_4:+8307277 | Msa0667720:three_prime_UTR |
| ACTTCTTGGAACAGAATCTA+AGG | 0.322435 | 4_4:-8305028 | None:intergenic |
| TATTTAGTGTTATATTGTAT+TGG | 0.323817 | 4_4:+8307342 | Msa0667720:three_prime_UTR |
| TGTTCCTTTAACAACCCTTT+TGG | 0.323978 | 4_4:-8305004 | None:intergenic |
| AGCACCAAAAGGGTTGTTAA+AGG | 0.333890 | 4_4:+8305000 | Msa0667720:CDS |
| TGGTGTAGTAGCAAGGTTAA+TGG | 0.335546 | 4_4:+8304960 | Msa0667720:CDS |
| CTCAAAGACTGAAAGCTTAG+AGG | 0.336299 | 4_4:+8307093 | Msa0667720:CDS |
| AAGAAAAGTGTATAAATAAA+GGG | 0.363831 | 4_4:+8307278 | Msa0667720:three_prime_UTR |
| GGTGTAGTAGCAAGGTTAAT+GGG | 0.365165 | 4_4:+8304961 | Msa0667720:CDS |
| ATAGAAACTTTCACTTAGAA+AGG | 0.377296 | 4_4:-8304565 | None:intergenic |
| AAACAAGAAAATTCAAGAAA+TGG | 0.379420 | 4_4:+8304805 | Msa0667720:CDS |
| GAGAAAGTAAACAATAATAA+AGG | 0.383541 | 4_4:+8306965 | Msa0667720:CDS |
| AAGCTTAGAGGAAATTTGTT+TGG | 0.383976 | 4_4:+8307105 | Msa0667720:CDS |
| ATCTTTATTGCCAGTGTCCT+TGG | 0.392267 | 4_4:+8306928 | Msa0667720:CDS |
| CCAAAGTAGGTCAATTAAAC+CGG | 0.395853 | 4_4:-8307240 | None:intergenic |
| AATTGTAGTTATTATGGATA+TGG | 0.396637 | 4_4:+8305417 | Msa0667720:CDS |
| GAAAGTGGAATATATTGTAT+TGG | 0.396781 | 4_4:+8307301 | Msa0667720:three_prime_UTR |
| AAAGTGGAATATATTGTATT+GGG | 0.412218 | 4_4:+8307302 | Msa0667720:three_prime_UTR |
| TTCTCTGTTGATGTCAGTGT+GGG | 0.417009 | 4_4:-8306996 | None:intergenic |
| CCGGTTTAATTGACCTACTT+TGG | 0.427732 | 4_4:+8307240 | Msa0667720:three_prime_UTR |
| GTTAAGAAGGAGAAGAATCA+AGG | 0.429807 | 4_4:+8305264 | Msa0667720:CDS |
| GGAAATTGTGAGAGTTAAGA+AGG | 0.438622 | 4_4:+8305251 | Msa0667720:CDS |
| CTTCTTCTAAGTATAAATCA+AGG | 0.443185 | 4_4:+8305343 | Msa0667720:CDS |
| TGTATAAATAAAGGGGAAAG+TGG | 0.444646 | 4_4:+8307286 | Msa0667720:three_prime_UTR |
| TTGACATCTAGAACTGAAAC+AGG | 0.458423 | 4_4:-8305606 | None:intergenic |
| CTCTTCAACATCTTCTTCCA+AGG | 0.463668 | 4_4:-8306945 | None:intergenic |
| GATGATTCTATTACTACTCC+TGG | 0.467242 | 4_4:+8304940 | Msa0667720:CDS |
| TATTATGGATATGGTGATGT+TGG | 0.477259 | 4_4:+8305426 | Msa0667720:CDS |
| ATTCACTTCCAAGCACCAAA+AGG | 0.486866 | 4_4:+8304989 | Msa0667720:CDS |
| TTGCCTAATAGGCCAAAGAA+AGG | 0.492813 | 4_4:+8305480 | Msa0667720:CDS |
| TTCACTTCCAAGCACCAAAA+GGG | 0.495119 | 4_4:+8304990 | Msa0667720:CDS |
| TTAAGAAGGAGAAGAATCAA+GGG | 0.500858 | 4_4:+8305265 | Msa0667720:CDS |
| CAAGTTCTAATCTTTCATCA+TGG | 0.501427 | 4_4:+8304780 | Msa0667720:exon |
| GTCAATTAAACCGGGACGGA+GGG | 0.522206 | 4_4:-8307231 | None:intergenic |
| GATTCAGACAGAACATAGCT+TGG | 0.522604 | 4_4:+8305572 | Msa0667720:CDS |
| GCTTGAGTTTGATCAAAACA+TGG | 0.523774 | 4_4:+8305077 | Msa0667720:CDS |
| TTTGACAGAAGAAAGTATAA+GGG | 0.526153 | 4_4:+8307057 | Msa0667720:CDS |
| AGAACTTGATATTTGTGTGA+TGG | 0.550194 | 4_4:-8304765 | None:intergenic |
| AGTTAAAAGATGAACCAAGA+AGG | 0.554790 | 4_4:+8305307 | Msa0667720:CDS |
| AGAAAAGTGTATAAATAAAG+GGG | 0.559725 | 4_4:+8307279 | Msa0667720:three_prime_UTR |
| CTTGAGTTTGATCAAAACAT+GGG | 0.565956 | 4_4:+8305078 | Msa0667720:CDS |
| AAAGCATACTCCCTCCGTCC+CGG | 0.572522 | 4_4:+8307221 | Msa0667720:three_prime_UTR |
| CTTCTCTGTTGATGTCAGTG+TGG | 0.574065 | 4_4:-8306997 | None:intergenic |
| GTTAAAAGATGAACCAAGAA+GGG | 0.583184 | 4_4:+8305308 | Msa0667720:CDS |
| TTCTTCTAAGTATAAATCAA+GGG | 0.583825 | 4_4:+8305344 | Msa0667720:CDS |
| ACATCTTCTTCCAAGGACAC+TGG | 0.590378 | 4_4:-8306938 | None:intergenic |
| CTACTCCTGGTGTAGTAGCA+AGG | 0.604802 | 4_4:+8304953 | Msa0667720:CDS |
| GTATGCTTTATAGACAAAGA+AGG | 0.605677 | 4_4:-8307207 | None:intergenic |
| AAACTTGAGAATAAAGAGCA+AGG | 0.615672 | 4_4:+8305230 | Msa0667720:CDS |
| CAAAGTAGGTCAATTAAACC+GGG | 0.622247 | 4_4:-8307239 | None:intergenic |
| ATTAACCTTGCTACTACACC+AGG | 0.623143 | 4_4:-8304958 | None:intergenic |
| GTGTAGTAGCAAGGTTAATG+GGG | 0.625800 | 4_4:+8304962 | Msa0667720:CDS |
| GGTCAATTAAACCGGGACGG+AGG | 0.631337 | 4_4:-8307232 | None:intergenic |
| GTAGGTCAATTAAACCGGGA+CGG | 0.643102 | 4_4:-8307235 | None:intergenic |
| TCTCTGTTGATGTCAGTGTG+GGG | 0.670330 | 4_4:-8306995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGATTTAATATTTTTAA+TGG | + | chr4_4:8305845-8305864 | Msa0667720:intron | 10.0% |
| !!! | TTAATGTTTTTAAAAAAGAT+TGG | + | chr4_4:8306056-8306075 | Msa0667720:intron | 10.0% |
| !!! | TTAATTTTAAAAGAAAAAAG+AGG | + | chr4_4:8306493-8306512 | Msa0667720:intron | 10.0% |
| !!! | TTGAAAATTTTTAAGATAAG+GGG | - | chr4_4:8304745-8304764 | None:intergenic | 15.0% |
| !!! | GTTGAAAATTTTTAAGATAA+GGG | - | chr4_4:8304746-8304765 | None:intergenic | 15.0% |
| !! | AAATAAAAAATTAGCAACAA+GGG | - | chr4_4:8305682-8305701 | None:intergenic | 15.0% |
| !! | TAAATAAAAAATTAGCAACA+AGG | - | chr4_4:8305683-8305702 | None:intergenic | 15.0% |
| !! | ATTACTTACTTATTTACAAT+TGG | + | chr4_4:8305735-8305754 | Msa0667720:intron | 15.0% |
| !!! | AATTCATTCCAAAATATTTT+AGG | - | chr4_4:8305795-8305814 | None:intergenic | 15.0% |
| !! | AAATATTAAATGGTCAAAAA+TGG | - | chr4_4:8307143-8307162 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr4_4:8307277-8307296 | Msa0667720:three_prime_UTR | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr4_4:8307278-8307297 | Msa0667720:three_prime_UTR | 15.0% |
| !!! | TGATGATTGAAAATTTTAAG+GGG | - | chr4_4:8304625-8304644 | None:intergenic | 20.0% |
| !!! | GTGATGATTGAAAATTTTAA+GGG | - | chr4_4:8304626-8304645 | None:intergenic | 20.0% |
| !!! | TGTGATGATTGAAAATTTTA+AGG | - | chr4_4:8304627-8304646 | None:intergenic | 20.0% |
| !!! | GGTTGAAAATTTTTAAGATA+AGG | - | chr4_4:8304747-8304766 | None:intergenic | 20.0% |
| !! | AAACAAGAAAATTCAAGAAA+TGG | + | chr4_4:8304805-8304824 | Msa0667720:CDS | 20.0% |
| !!! | CTTGATATTGATGATAAAAA+AGG | + | chr4_4:8305183-8305202 | Msa0667720:CDS | 20.0% |
| !!! | TATTGATGATAAAAAAGGTA+AGG | + | chr4_4:8305188-8305207 | Msa0667720:CDS | 20.0% |
| !! | TTCTTCTAAGTATAAATCAA+GGG | + | chr4_4:8305344-8305363 | Msa0667720:CDS | 20.0% |
| !! | AATTGTAGTTATTATGGATA+TGG | + | chr4_4:8305417-8305436 | Msa0667720:CDS | 20.0% |
| !!! | AATGATTATGCTTTTCTTTA+TGG | + | chr4_4:8305627-8305646 | Msa0667720:CDS | 20.0% |
| !!! | TTTCTGAACCTAAAATATTT+TGG | + | chr4_4:8305784-8305803 | Msa0667720:intron | 20.0% |
| !!! | TTCTAACAATTTAGAGTTAT+TGG | + | chr4_4:8305900-8305919 | Msa0667720:intron | 20.0% |
| !!! | TCTAACAATTTAGAGTTATT+GGG | + | chr4_4:8305901-8305920 | Msa0667720:intron | 20.0% |
| !! | AAAAACATTAAAAACATGAG+AGG | - | chr4_4:8306047-8306066 | None:intergenic | 20.0% |
| !! | ATACAAAGAAAGATAAGTAT+TGG | + | chr4_4:8306229-8306248 | Msa0667720:intron | 20.0% |
| !! | TTACTTTCTCTTTATTACTT+TGG | - | chr4_4:8306263-8306282 | None:intergenic | 20.0% |
| !!! | AAATGCATTTTTAATCAAAC+AGG | - | chr4_4:8306801-8306820 | None:intergenic | 20.0% |
| !! | TAACTGTAATCAAATATTGA+GGG | - | chr4_4:8306871-8306890 | None:intergenic | 20.0% |
| !! | GAGAAAGTAAACAATAATAA+AGG | + | chr4_4:8306965-8306984 | Msa0667720:CDS | 20.0% |
| !!! | TTTTGACCATTTAATATTTG+AGG | + | chr4_4:8307144-8307163 | Msa0667720:CDS | 20.0% |
| !! | TTAAGACCTCAAATATTAAA+TGG | - | chr4_4:8307153-8307172 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr4_4:8307279-8307298 | Msa0667720:three_prime_UTR | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4_4:8307302-8307321 | Msa0667720:three_prime_UTR | 20.0% |
| ! | ATAGAAACTTTCACTTAGAA+AGG | - | chr4_4:8304568-8304587 | None:intergenic | 25.0% |
| !!! | GATGATTGAAAATTTTAAGG+GGG | - | chr4_4:8304624-8304643 | None:intergenic | 25.0% |
| !! | ACATTTTCAGATGGATATAT+TGG | - | chr4_4:8304886-8304905 | None:intergenic | 25.0% |
| !! | ATTGTTTCAACATTTTCAGA+TGG | - | chr4_4:8304895-8304914 | None:intergenic | 25.0% |
| !! | AAGTTAACTGATTTACTTCT+TGG | - | chr4_4:8305045-8305064 | None:intergenic | 25.0% |
| ! | TACTTAGAAGAAGATGAAAA+TGG | - | chr4_4:8305336-8305355 | None:intergenic | 25.0% |
| ! | CTTCTTCTAAGTATAAATCA+AGG | + | chr4_4:8305343-8305362 | Msa0667720:CDS | 25.0% |
| !!! | ATTTTTCAAGTGTTTCTACA+AGG | + | chr4_4:8305391-8305410 | Msa0667720:CDS | 25.0% |
| ! | AGGTGTAATTGTAGTTATTA+TGG | + | chr4_4:8305411-8305430 | Msa0667720:CDS | 25.0% |
| ! | AAGTAATTCACAAACTAGAA+TGG | - | chr4_4:8305722-8305741 | None:intergenic | 25.0% |
| !! | ATGAATTGTGACTTTTGAAT+TGG | + | chr4_4:8306015-8306034 | Msa0667720:intron | 25.0% |
| !! | CTTTTCATAAAAATAGAGTG+AGG | + | chr4_4:8306354-8306373 | Msa0667720:intron | 25.0% |
| ! | ATAGAGTGAGGAAATATTTA+TGG | + | chr4_4:8306366-8306385 | Msa0667720:intron | 25.0% |
| ! | TAGAGTGAGGAAATATTTAT+GGG | + | chr4_4:8306367-8306386 | Msa0667720:intron | 25.0% |
| ! | TTTAAAAATATGAAGGACCT+TGG | - | chr4_4:8306443-8306462 | None:intergenic | 25.0% |
| ! | GTAACTGTAATCAAATATTG+AGG | - | chr4_4:8306872-8306891 | None:intergenic | 25.0% |
| !!! | GATTTCCTTTTTGACTTTAA+AGG | - | chr4_4:8306905-8306924 | None:intergenic | 25.0% |
| !! | TTTGACAGAAGAAAGTATAA+GGG | + | chr4_4:8307057-8307076 | Msa0667720:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4_4:8307301-8307320 | Msa0667720:three_prime_UTR | 25.0% |
| !! | TGTGATGAAGCTTTTTCTTT+TGG | - | chr4_4:8304601-8304620 | None:intergenic | 30.0% |
| AGAACTTGATATTTGTGTGA+TGG | - | chr4_4:8304768-8304787 | None:intergenic | 30.0% | |
| ! | CAAGTTCTAATCTTTCATCA+TGG | + | chr4_4:8304780-8304799 | Msa0667720:exon | 30.0% |
| ! | TTTTCAGATGGATATATTGG+TGG | - | chr4_4:8304883-8304902 | None:intergenic | 30.0% |
| CTTGAGTTTGATCAAAACAT+GGG | + | chr4_4:8305078-8305097 | Msa0667720:CDS | 30.0% | |
| !! | TTTTAGAGAAGTTCCTTCAA+TGG | + | chr4_4:8305131-8305150 | Msa0667720:CDS | 30.0% |
| ! | TTTTGCTTATCAACCATTGA+AGG | - | chr4_4:8305147-8305166 | None:intergenic | 30.0% |
| AAACTTGAGAATAAAGAGCA+AGG | + | chr4_4:8305230-8305249 | Msa0667720:CDS | 30.0% | |
| TTAAGAAGGAGAAGAATCAA+GGG | + | chr4_4:8305265-8305284 | Msa0667720:CDS | 30.0% | |
| AGTTAAAAGATGAACCAAGA+AGG | + | chr4_4:8305307-8305326 | Msa0667720:CDS | 30.0% | |
| GTTAAAAGATGAACCAAGAA+GGG | + | chr4_4:8305308-8305327 | Msa0667720:CDS | 30.0% | |
| ! | TATTATGGATATGGTGATGT+TGG | + | chr4_4:8305426-8305445 | Msa0667720:CDS | 30.0% |
| !! | GTTTTGTTGAACCAAAAATG+AGG | + | chr4_4:8305502-8305521 | Msa0667720:CDS | 30.0% |
| ! | TTAGTGTCTAGAACTTTCAA+TGG | + | chr4_4:8305818-8305837 | Msa0667720:intron | 30.0% |
| ! | TCCTTACACAACTTGTTTAT+TGG | + | chr4_4:8305939-8305958 | Msa0667720:intron | 30.0% |
| ACCAATAAACAAGTTGTGTA+AGG | - | chr4_4:8305943-8305962 | None:intergenic | 30.0% | |
| ! | TTACACAACTTGTTTATTGG+TGG | + | chr4_4:8305942-8305961 | Msa0667720:intron | 30.0% |
| GTTGCGTATATAGTAAACTA+AGG | - | chr4_4:8306137-8306156 | None:intergenic | 30.0% | |
| ! | CATTTTTGTTGACAACCATT+GGG | + | chr4_4:8306195-8306214 | Msa0667720:intron | 30.0% |
| !! | GTATATTTAAGTTGTCCCAA+TGG | - | chr4_4:8306213-8306232 | None:intergenic | 30.0% |
| AGAGTGAGGAAATATTTATG+GGG | + | chr4_4:8306368-8306387 | Msa0667720:intron | 30.0% | |
| AAAGAGGAAACAAACATACA+CGG | + | chr4_4:8306509-8306528 | Msa0667720:intron | 30.0% | |
| CAATATTGCTCTTTGTAAGA+AGG | - | chr4_4:8306657-8306676 | None:intergenic | 30.0% | |
| ! | CTTTGACAGAAGAAAGTATA+AGG | + | chr4_4:8307056-8307075 | Msa0667720:CDS | 30.0% |
| ! | AAGCTTAGAGGAAATTTGTT+TGG | + | chr4_4:8307105-8307124 | Msa0667720:CDS | 30.0% |
| GTATGCTTTATAGACAAAGA+AGG | - | chr4_4:8307210-8307229 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4_4:8307286-8307305 | Msa0667720:three_prime_UTR | 30.0% | |
| !!! | GGTTTTAGAACTTGCAAAGT+GGG | - | chr4_4:8304547-8304566 | None:intergenic | 35.0% |
| !!! | AGGTTTTAGAACTTGCAAAG+TGG | - | chr4_4:8304548-8304567 | None:intergenic | 35.0% |
| GATGATTCTATTACTACTCC+TGG | + | chr4_4:8304940-8304959 | Msa0667720:CDS | 35.0% | |
| ! | TGTTCCTTTAACAACCCTTT+TGG | - | chr4_4:8305007-8305026 | None:intergenic | 35.0% |
| ACTTCTTGGAACAGAATCTA+AGG | - | chr4_4:8305031-8305050 | None:intergenic | 35.0% | |
| GCTTGAGTTTGATCAAAACA+TGG | + | chr4_4:8305077-8305096 | Msa0667720:CDS | 35.0% | |
| GGAAATTGTGAGAGTTAAGA+AGG | + | chr4_4:8305251-8305270 | Msa0667720:CDS | 35.0% | |
| GTTAAGAAGGAGAAGAATCA+AGG | + | chr4_4:8305264-8305283 | Msa0667720:CDS | 35.0% | |
| CAACTTCTTCATTGCCTAAT+AGG | + | chr4_4:8305469-8305488 | Msa0667720:CDS | 35.0% | |
| AAACCTTTCTTTGGCCTATT+AGG | - | chr4_4:8305486-8305505 | None:intergenic | 35.0% | |
| GGTTCAACAAAACCTTTCTT+TGG | - | chr4_4:8305495-8305514 | None:intergenic | 35.0% | |
| TGAACCAAAAATGAGGAACA+AGG | + | chr4_4:8305509-8305528 | Msa0667720:CDS | 35.0% | |
| ! | TTCACCTTGTTCCTCATTTT+TGG | - | chr4_4:8305516-8305535 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGACACATTCTT+TGG | - | chr4_4:8305552-8305571 | None:intergenic | 35.0% |
| TGTTCTGTCTGAATCTTCTT+TGG | - | chr4_4:8305567-8305586 | None:intergenic | 35.0% | |
| ! | TTGACATCTAGAACTGAAAC+AGG | - | chr4_4:8305609-8305628 | None:intergenic | 35.0% |
| !! | CTTTATGGAGCTGATTTTTC+AGG | + | chr4_4:8305642-8305661 | Msa0667720:CDS | 35.0% |
| CCAATGGTTGTCAACAAAAA+TGG | - | chr4_4:8306197-8306216 | None:intergenic | 35.0% | |
| !! | CCATTTTTGTTGACAACCAT+TGG | + | chr4_4:8306194-8306213 | Msa0667720:intron | 35.0% |
| !!! | CCTTTTTGACTTTAAAGGCA+AGG | - | chr4_4:8306900-8306919 | None:intergenic | 35.0% |
| !! | CCTTGCCTTTAAAGTCAAAA+AGG | + | chr4_4:8306897-8306916 | Msa0667720:CDS | 35.0% |
| CAAAGTAGGTCAATTAAACC+GGG | - | chr4_4:8307242-8307261 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTAAAC+CGG | - | chr4_4:8307243-8307262 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr4_4:8307256-8307275 | None:intergenic | 35.0% | |
| ATTAACCTTGCTACTACACC+AGG | - | chr4_4:8304961-8304980 | None:intergenic | 40.0% | |
| TGGTGTAGTAGCAAGGTTAA+TGG | + | chr4_4:8304960-8304979 | Msa0667720:CDS | 40.0% | |
| GGTGTAGTAGCAAGGTTAAT+GGG | + | chr4_4:8304961-8304980 | Msa0667720:CDS | 40.0% | |
| GTGTAGTAGCAAGGTTAATG+GGG | + | chr4_4:8304962-8304981 | Msa0667720:CDS | 40.0% | |
| ATTCACTTCCAAGCACCAAA+AGG | + | chr4_4:8304989-8305008 | Msa0667720:CDS | 40.0% | |
| TTCACTTCCAAGCACCAAAA+GGG | + | chr4_4:8304990-8305009 | Msa0667720:CDS | 40.0% | |
| !!! | TTAACAACCCTTTTGGTGCT+TGG | - | chr4_4:8305000-8305019 | None:intergenic | 40.0% |
| AGCACCAAAAGGGTTGTTAA+AGG | + | chr4_4:8305000-8305019 | Msa0667720:CDS | 40.0% | |
| ! | ATGCTGAAGTTTTCACACGT+CGG | - | chr4_4:8305110-8305129 | None:intergenic | 40.0% |
| GATGAAAATGGAACCCTTCT+TGG | - | chr4_4:8305324-8305343 | None:intergenic | 40.0% | |
| TTGCCTAATAGGCCAAAGAA+AGG | + | chr4_4:8305480-8305499 | Msa0667720:CDS | 40.0% | |
| GATTCAGACAGAACATAGCT+TGG | + | chr4_4:8305572-8305591 | Msa0667720:CDS | 40.0% | |
| ATCTTTATTGCCAGTGTCCT+TGG | + | chr4_4:8306928-8306947 | Msa0667720:CDS | 40.0% | |
| CTCTTCAACATCTTCTTCCA+AGG | - | chr4_4:8306948-8306967 | None:intergenic | 40.0% | |
| TTCTCTGTTGATGTCAGTGT+GGG | - | chr4_4:8306999-8307018 | None:intergenic | 40.0% | |
| CTCTAAGCTTTCAGTCTTTG+AGG | - | chr4_4:8307095-8307114 | None:intergenic | 40.0% | |
| CTCAAAGACTGAAAGCTTAG+AGG | + | chr4_4:8307093-8307112 | Msa0667720:CDS | 40.0% | |
| CCGGTTTAATTGACCTACTT+TGG | + | chr4_4:8307240-8307259 | Msa0667720:three_prime_UTR | 40.0% | |
| AAGGACCTTGGACTTCTACT+TGG | - | chr4_4:8306431-8306450 | None:intergenic | 45.0% | |
| ACATCTTCTTCCAAGGACAC+TGG | - | chr4_4:8306941-8306960 | None:intergenic | 45.0% | |
| TCTCTGTTGATGTCAGTGTG+GGG | - | chr4_4:8306998-8307017 | None:intergenic | 45.0% | |
| CTTCTCTGTTGATGTCAGTG+TGG | - | chr4_4:8307000-8307019 | None:intergenic | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | - | chr4_4:8307238-8307257 | None:intergenic | 45.0% | |
| !!! | TTTTAAATTTAAAAATATGA+AGG | - | chr4_4:8306450-8306469 | None:intergenic | 5.0% |
| CTACTCCTGGTGTAGTAGCA+AGG | + | chr4_4:8304953-8304972 | Msa0667720:CDS | 50.0% | |
| CGTCACCAAGTAGAAGTCCA+AGG | + | chr4_4:8306423-8306442 | Msa0667720:intron | 50.0% | |
| GTGACTCACTCATGCGATGT+CGG | - | chr4_4:8306565-8306584 | None:intergenic | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | - | chr4_4:8307234-8307253 | None:intergenic | 50.0% | |
| AAAGCATACTCCCTCCGTCC+CGG | + | chr4_4:8307221-8307240 | Msa0667720:three_prime_UTR | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | - | chr4_4:8307235-8307254 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8304540 | 8307363 | 8304540 | ID=Msa0667720;Name=Msa0667720 |
| chr4_4 | mRNA | 8304540 | 8307363 | 8304540 | ID=Msa0667720-mRNA-1;Parent=Msa0667720;Name=Msa0667720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=259|1|1|1|1|1|2|177|387 |
| chr4_4 | exon | 8304540 | 8305663 | 8304540 | ID=Msa0667720-mRNA-1:exon:2695;Parent=Msa0667720-mRNA-1 |
| chr4_4 | exon | 8306888 | 8307363 | 8306888 | ID=Msa0667720-mRNA-1:exon:2696;Parent=Msa0667720-mRNA-1 |
| chr4_4 | five_prime_UTR | 8304540 | 8304798 | 8304540 | ID=Msa0667720-mRNA-1:five_prime_utr;Parent=Msa0667720-mRNA-1 |
| chr4_4 | CDS | 8304799 | 8305663 | 8304799 | ID=Msa0667720-mRNA-1:cds;Parent=Msa0667720-mRNA-1 |
| chr4_4 | CDS | 8306888 | 8307186 | 8306888 | ID=Msa0667720-mRNA-1:cds;Parent=Msa0667720-mRNA-1 |
| chr4_4 | three_prime_UTR | 8307187 | 8307363 | 8307187 | ID=Msa0667720-mRNA-1:three_prime_utr;Parent=Msa0667720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
