Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389400 | XP_003604660.1 | 89.744 | 390 | 14 | 5 | 1 | 369 | 1 | 385 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389400 | G7JN31 | 89.744 | 390 | 14 | 5 | 1 | 369 | 1 | 385 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa0389400 | 0.811868 | 5.643429e-51 | -8.615850e-47 |
| Msa0237210 | Msa0389400 | 0.800933 | 1.142100e-48 | -8.615850e-47 |
| Msa0389400 | Msa0532920 | 0.925905 | 9.720399e-91 | -8.615850e-47 |
| Msa0389400 | Msa0610250 | 0.801761 | 7.730017e-49 | -8.615850e-47 |
| Msa0389400 | Msa0624950 | 0.964314 | 3.588967e-123 | -8.615850e-47 |
| Msa0389400 | Msa0667720 | 0.880667 | 4.545026e-70 | -8.615850e-47 |
| Msa0389400 | Msa0899970 | 0.803822 | 2.901967e-49 | -8.615850e-47 |
| Msa0389400 | Msa0965080 | 0.803989 | 2.679148e-49 | -8.615850e-47 |
| Msa0389400 | Msa0965290 | 0.811815 | 5.797821e-51 | -8.615850e-47 |
| Msa0389400 | Msa0999680 | 0.810518 | 1.107895e-50 | -8.615850e-47 |
| Msa0389400 | Msa1340200 | 0.814593 | 1.423626e-51 | -8.615850e-47 |
| Msa0389400 | Msa1420640 | 0.961142 | 2.326710e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389400 | MtrunA17_Chr4g0006251 | 89.744 | 390 | 14 | 5 | 1 | 369 | 1 | 385 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTAACTGATTTACTTCT+TGG | 0.222003 | 3_1:+94182935 | None:intergenic |
| TTCTTTGGTGACACATTCTT+TGG | 0.227592 | 3_1:+94182428 | None:intergenic |
| AGGTGTAATTGTAGTTATTA+TGG | 0.236281 | 3_1:-94182566 | Msa0389400:CDS |
| TGTTCTGTCTGAATCTTCTT+TGG | 0.263057 | 3_1:+94182413 | None:intergenic |
| GATGAAAATGGAACCCTTCT+TGG | 0.264237 | 3_1:+94182656 | None:intergenic |
| CTTTGACAGAAGAAAGTATA+AGG | 0.276142 | 3_1:-94180432 | Msa0389400:CDS |
| GTTAAGAAGGAGAAGAATAA+AGG | 0.294047 | 3_1:-94182713 | Msa0389400:CDS |
| CAACTTCTTCATTGCCTACT+AGG | 0.319844 | 3_1:-94182508 | Msa0389400:CDS |
| ACTTCTTGGAACAGAATCTA+AGG | 0.322435 | 3_1:+94182949 | None:intergenic |
| TGTTCCTTTAACAACCCTTT+TGG | 0.323978 | 3_1:+94182973 | None:intergenic |
| AGCACCAAAAGGGTTGTTAA+AGG | 0.333890 | 3_1:-94182977 | Msa0389400:CDS |
| TGGTGTAGTAGCAAGGTTAA+TGG | 0.335546 | 3_1:-94183017 | Msa0389400:CDS |
| AATTGTAGTTATTATGGATA+TGG | 0.346675 | 3_1:-94182560 | Msa0389400:CDS |
| ATCAAAGACTGAAAGCTTAG+AGG | 0.361130 | 3_1:-94180395 | Msa0389400:CDS |
| GGTGTAGTAGCAAGGTTAAT+GGG | 0.365165 | 3_1:-94183016 | Msa0389400:CDS |
| TTAAGAAGGAGAAGAATAAA+GGG | 0.377122 | 3_1:-94182712 | Msa0389400:CDS |
| AAACAAGAAAATTCAAGAAA+TGG | 0.379420 | 3_1:-94183172 | Msa0389400:CDS |
| TACTTGGAAGAAGATGAAAA+TGG | 0.380603 | 3_1:+94182644 | None:intergenic |
| GAGAAAGTAAACAATAATAA+AGG | 0.383541 | 3_1:-94180523 | Msa0389400:CDS |
| AAGCTTAGAGGAAATTTGTT+TGG | 0.383976 | 3_1:-94180383 | Msa0389400:CDS |
| ATCTTTATTGCCAGTGTCCT+TGG | 0.392267 | 3_1:-94180560 | Msa0389400:intron |
| TTCTCTGTTGATGTCAGTGT+GGG | 0.417009 | 3_1:+94180492 | None:intergenic |
| GGAAATTGTGAGAGTTAAGA+AGG | 0.438622 | 3_1:-94182726 | Msa0389400:CDS |
| CTTCTTCCAAGTATAAATCA+AGG | 0.448989 | 3_1:-94182634 | Msa0389400:CDS |
| TTGACATCTAGAACTGAAAC+AGG | 0.458423 | 3_1:+94182371 | None:intergenic |
| CTCTTCAACATCTTCTTCCA+AGG | 0.463668 | 3_1:+94180543 | None:intergenic |
| GATGATTCTATTACTACTCC+TGG | 0.467242 | 3_1:-94183037 | Msa0389400:CDS |
| TCTAACCCTTGATTTATACT+TGG | 0.472162 | 3_1:+94182628 | None:intergenic |
| TATTATGGATATGGTAATGC+TGG | 0.473019 | 3_1:-94182551 | Msa0389400:CDS |
| TTGCCTACTAGGCAAAAGAA+AGG | 0.483545 | 3_1:-94182497 | Msa0389400:CDS |
| ATTCACTTCCAAGCACCAAA+AGG | 0.486866 | 3_1:-94182988 | Msa0389400:CDS |
| TTCACTTCCAAGCACCAAAA+GGG | 0.495119 | 3_1:-94182987 | Msa0389400:CDS |
| GCTTGAGTTTGATCAAAACA+TGG | 0.523774 | 3_1:-94182900 | Msa0389400:CDS |
| TTTGACAGAAGAAAGTATAA+GGG | 0.526153 | 3_1:-94180431 | Msa0389400:CDS |
| TGCCTACTAGGCAAAAGAAA+GGG | 0.548532 | 3_1:-94182496 | Msa0389400:CDS |
| AGTTAAAAGATGAACCAAGA+AGG | 0.554790 | 3_1:-94182670 | Msa0389400:CDS |
| CTTGAGTTTGATCAAAACAT+GGG | 0.565956 | 3_1:-94182899 | Msa0389400:CDS |
| CTTCTCTGTTGATGTCAGTG+TGG | 0.574065 | 3_1:+94180491 | None:intergenic |
| GTTAAAAGATGAACCAAGAA+GGG | 0.583184 | 3_1:-94182669 | Msa0389400:CDS |
| GATTCAGACAGAACATAGCA+TGG | 0.587606 | 3_1:-94182405 | Msa0389400:CDS |
| TTCTTCCAAGTATAAATCAA+GGG | 0.598400 | 3_1:-94182633 | Msa0389400:CDS |
| CTACTCCTGGTGTAGTAGCA+AGG | 0.604802 | 3_1:-94183024 | Msa0389400:CDS |
| AAACTTGAGAATAAAGAGCA+AGG | 0.615672 | 3_1:-94182747 | Msa0389400:CDS |
| ATTAACCTTGCTACTACACC+AGG | 0.623143 | 3_1:+94183019 | None:intergenic |
| GTGTAGTAGCAAGGTTAATG+GGG | 0.625800 | 3_1:-94183015 | Msa0389400:CDS |
| TCTCTGTTGATGTCAGTGTG+GGG | 0.670330 | 3_1:+94180493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTGATTTAATATTTTTAA+TGG | - | chr3_1:94181361-94181380 | Msa0389400:intron | 10.0% |
| !! | AAATATTAAATGATCAAAAA+TGG | + | chr3_1:94183157-94183176 | None:intergenic | 10.0% |
| !! | AAAATAAAAATTAGCAACAA+GGG | + | chr3_1:94181207-94181226 | None:intergenic | 15.0% |
| !! | AAAAATAAAAATTAGCAACA+AGG | + | chr3_1:94181208-94181227 | None:intergenic | 15.0% |
| !!! | AATTCATTCCAAAATATTTT+AGG | + | chr3_1:94181311-94181330 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAAACATTGAG+AGG | + | chr3_1:94181568-94181587 | None:intergenic | 15.0% |
| !!! | TAAAAATAATTTTTAGAGTG+AGG | - | chr3_1:94181690-94181709 | Msa0389400:intron | 15.0% |
| !!! | TTAACTTTAAAAGAAAAAAG+AGG | - | chr3_1:94181832-94181851 | Msa0389400:intron | 15.0% |
| !!! | AAATATTAGATTTTTTAGGT+AGG | + | chr3_1:94182387-94182406 | None:intergenic | 15.0% |
| !!! | CTACAAATATTAGATTTTTT+AGG | + | chr3_1:94182391-94182410 | None:intergenic | 15.0% |
| !! | AAACAAGAAAATTCAAGAAA+TGG | - | chr3_1:94180330-94180349 | Msa0389400:CDS | 20.0% |
| !!! | CTTGATATTGATGATAAAAA+AGG | - | chr3_1:94180708-94180727 | Msa0389400:intron | 20.0% |
| !!! | TATTGATGATAAAAAAGGTA+AGG | - | chr3_1:94180713-94180732 | Msa0389400:intron | 20.0% |
| !! | AATTGTAGTTATTATGGATA+TGG | - | chr3_1:94180942-94180961 | Msa0389400:intron | 20.0% |
| !! | TTGTGAATTACTTATTTACA+AGG | - | chr3_1:94181247-94181266 | Msa0389400:intron | 20.0% |
| !!! | ATTCCAAAATATTTTAGGTT+CGG | + | chr3_1:94181306-94181325 | None:intergenic | 20.0% |
| !!! | AAATGCATTTTTAATCAAAC+AGG | + | chr3_1:94182120-94182139 | None:intergenic | 20.0% |
| !! | TAACTGTAATCAAATATTGA+GGG | + | chr3_1:94182190-94182209 | None:intergenic | 20.0% |
| !!! | ATATTCTTTGAAAGGATATT+TGG | - | chr3_1:94182520-94182539 | Msa0389400:CDS | 20.0% |
| !! | GAGAAAGTAAACAATAATAA+AGG | - | chr3_1:94182979-94182998 | Msa0389400:CDS | 20.0% |
| !! | ACATTTTCAGATGGATATAT+TGG | + | chr3_1:94180411-94180430 | None:intergenic | 25.0% |
| !! | ATTGTTTCAACATTTTCAGA+TGG | + | chr3_1:94180420-94180439 | None:intergenic | 25.0% |
| !! | AAGTTAACTGATTTACTTCT+TGG | + | chr3_1:94180570-94180589 | None:intergenic | 25.0% |
| ! | TTAAGAAGGAGAAGAATAAA+GGG | - | chr3_1:94180790-94180809 | Msa0389400:intron | 25.0% |
| ! | TTCTTCCAAGTATAAATCAA+GGG | - | chr3_1:94180869-94180888 | Msa0389400:intron | 25.0% |
| !!! | ATTTTTCAAGTGTTTCTACA+AGG | - | chr3_1:94180916-94180935 | Msa0389400:intron | 25.0% |
| ! | AGGTGTAATTGTAGTTATTA+TGG | - | chr3_1:94180936-94180955 | Msa0389400:intron | 25.0% |
| !! | AATGATTATGCTTTTCTCTA+TGG | - | chr3_1:94181152-94181171 | Msa0389400:intron | 25.0% |
| ! | AAGTAATTCACAAACTAGAA+TGG | + | chr3_1:94181240-94181259 | None:intergenic | 25.0% |
| ! | GAATTACTTATTTACAAGGT+TGG | - | chr3_1:94181251-94181270 | Msa0389400:intron | 25.0% |
| !! | TTTCCGAACCTAAAATATTT+TGG | - | chr3_1:94181300-94181319 | Msa0389400:intron | 25.0% |
| !! | TTCTAACAATTTAGAGTCAT+TGG | - | chr3_1:94181416-94181435 | Msa0389400:intron | 25.0% |
| !! | TCTAACAATTTAGAGTCATT+GGG | - | chr3_1:94181417-94181436 | Msa0389400:intron | 25.0% |
| !! | ATGAATTGTGACTTTTGTAT+TGG | - | chr3_1:94181536-94181555 | Msa0389400:intron | 25.0% |
| ! | GTTGCGTATATAGTAAATTA+AGG | + | chr3_1:94181658-94181677 | None:intergenic | 25.0% |
| !! | TTTAGAGTGAGGAAATATTT+AGG | - | chr3_1:94181701-94181720 | Msa0389400:intron | 25.0% |
| ! | TTAGAGTGAGGAAATATTTA+GGG | - | chr3_1:94181702-94181721 | Msa0389400:intron | 25.0% |
| ! | TTTAAAAATATGAAGGACCT+TGG | + | chr3_1:94181782-94181801 | None:intergenic | 25.0% |
| ! | AAAGAGGAAACAAACATATA+CGG | - | chr3_1:94181848-94181867 | Msa0389400:intron | 25.0% |
| ! | GTAACTGTAATCAAATATTG+AGG | + | chr3_1:94182191-94182210 | None:intergenic | 25.0% |
| ! | AAACACGTAGAATAATCAAA+TGG | + | chr3_1:94182494-94182513 | None:intergenic | 25.0% |
| ! | TTGTGACAATATTCTTTGAA+AGG | - | chr3_1:94182512-94182531 | Msa0389400:CDS | 25.0% |
| !! | CAATTCATACTATTAGTTCT+TGG | - | chr3_1:94182658-94182677 | Msa0389400:CDS | 25.0% |
| ! | TGAGTTAAAAAAGTGAACAA+AGG | - | chr3_1:94182698-94182717 | Msa0389400:CDS | 25.0% |
| ! | GAGTTAAAAAAGTGAACAAA+GGG | - | chr3_1:94182699-94182718 | Msa0389400:CDS | 25.0% |
| ! | ACAAACTGTTAAAGTCAAAA+AGG | - | chr3_1:94182911-94182930 | Msa0389400:CDS | 25.0% |
| !! | TTTGACAGAAGAAAGTATAA+GGG | - | chr3_1:94183071-94183090 | Msa0389400:CDS | 25.0% |
| ! | TTTTCAGATGGATATATTGG+TGG | + | chr3_1:94180408-94180427 | None:intergenic | 30.0% |
| CTTGAGTTTGATCAAAACAT+GGG | - | chr3_1:94180603-94180622 | Msa0389400:intron | 30.0% | |
| !! | TTTTAGAGAAGTTCCTTCAA+TGG | - | chr3_1:94180656-94180675 | Msa0389400:intron | 30.0% |
| ! | TTTTGCTTATCAACCATTGA+AGG | + | chr3_1:94180672-94180691 | None:intergenic | 30.0% |
| AAACTTGAGAATAAAGAGCA+AGG | - | chr3_1:94180755-94180774 | Msa0389400:intron | 30.0% | |
| GTTAAGAAGGAGAAGAATAA+AGG | - | chr3_1:94180789-94180808 | Msa0389400:intron | 30.0% | |
| AGTTAAAAGATGAACCAAGA+AGG | - | chr3_1:94180832-94180851 | Msa0389400:intron | 30.0% | |
| GTTAAAAGATGAACCAAGAA+GGG | - | chr3_1:94180833-94180852 | Msa0389400:intron | 30.0% | |
| TACTTGGAAGAAGATGAAAA+TGG | + | chr3_1:94180861-94180880 | None:intergenic | 30.0% | |
| CTTCTTCCAAGTATAAATCA+AGG | - | chr3_1:94180868-94180887 | Msa0389400:intron | 30.0% | |
| TCTAACCCTTGATTTATACT+TGG | + | chr3_1:94180877-94180896 | None:intergenic | 30.0% | |
| ! | TATTATGGATATGGTAATGC+TGG | - | chr3_1:94180951-94180970 | Msa0389400:intron | 30.0% |
| ! | TTAGCATCTAGAACTTTCAA+TGG | - | chr3_1:94181334-94181353 | Msa0389400:intron | 30.0% |
| TAGAGTGAGGAAATATTTAG+GGG | - | chr3_1:94181703-94181722 | Msa0389400:intron | 30.0% | |
| ! | CTGTGGCAATTTAATTTCTT+TGG | - | chr3_1:94182607-94182626 | Msa0389400:CDS | 30.0% |
| ! | AAGTGAACAAAGGGTATATA+TGG | - | chr3_1:94182708-94182727 | Msa0389400:CDS | 30.0% |
| AGAAGATTGCAAAAAGTTGT+GGG | - | chr3_1:94182775-94182794 | Msa0389400:CDS | 30.0% | |
| GATAGCATATTTCTCTTGTT+TGG | + | chr3_1:94182842-94182861 | None:intergenic | 30.0% | |
| ! | ACAGTTTGTTTGAGAGAAAT+AGG | + | chr3_1:94182900-94182919 | None:intergenic | 30.0% |
| ! | CTTTGACAGAAGAAAGTATA+AGG | - | chr3_1:94183070-94183089 | Msa0389400:CDS | 30.0% |
| ! | AAGCTTAGAGGAAATTTGTT+TGG | - | chr3_1:94183119-94183138 | Msa0389400:CDS | 30.0% |
| GATGATTCTATTACTACTCC+TGG | - | chr3_1:94180465-94180484 | Msa0389400:CDS | 35.0% | |
| ! | TGTTCCTTTAACAACCCTTT+TGG | + | chr3_1:94180532-94180551 | None:intergenic | 35.0% |
| ACTTCTTGGAACAGAATCTA+AGG | + | chr3_1:94180556-94180575 | None:intergenic | 35.0% | |
| GCTTGAGTTTGATCAAAACA+TGG | - | chr3_1:94180602-94180621 | Msa0389400:intron | 35.0% | |
| GGAAATTGTGAGAGTTAAGA+AGG | - | chr3_1:94180776-94180795 | Msa0389400:intron | 35.0% | |
| !! | GGTTTGTTGAACCAAAAATG+AGG | - | chr3_1:94181027-94181046 | Msa0389400:intron | 35.0% |
| TGAACCAAAAATGAGGAACA+AGG | - | chr3_1:94181034-94181053 | Msa0389400:intron | 35.0% | |
| ! | TTCACCTTGTTCCTCATTTT+TGG | + | chr3_1:94181041-94181060 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGACACATTCTT+TGG | + | chr3_1:94181077-94181096 | None:intergenic | 35.0% |
| TGTTCTGTCTGAATCTTCTT+TGG | + | chr3_1:94181092-94181111 | None:intergenic | 35.0% | |
| ! | TTGACATCTAGAACTGAAAC+AGG | + | chr3_1:94181134-94181153 | None:intergenic | 35.0% |
| ! | TCCTTACACAACTTGTTTAC+TGG | - | chr3_1:94181455-94181474 | Msa0389400:intron | 35.0% |
| ACCAGTAAACAAGTTGTGTA+AGG | + | chr3_1:94181459-94181478 | None:intergenic | 35.0% | |
| ! | TTACACAACTTGTTTACTGG+TGG | - | chr3_1:94181458-94181477 | Msa0389400:intron | 35.0% |
| AGAGTGAGGAAATATTTAGG+GGG | - | chr3_1:94181704-94181723 | Msa0389400:intron | 35.0% | |
| CAATGTTGCTCTTTGTAAGA+AGG | + | chr3_1:94181974-94181993 | None:intergenic | 35.0% | |
| GAAATTGTGAAGAGAGAAAG+AGG | - | chr3_1:94182248-94182267 | Msa0389400:intron | 35.0% | |
| ! | GAGTAGATTGATGTGTTGTT+TGG | - | chr3_1:94182299-94182318 | Msa0389400:intron | 35.0% |
| AGACTACGAGTATTATTCTG+TGG | - | chr3_1:94182590-94182609 | Msa0389400:CDS | 35.0% | |
| ! | TTTTGCAATCTTCTCAGTTG+AGG | + | chr3_1:94182769-94182788 | None:intergenic | 35.0% |
| GAGAAGATTGCAAAAAGTTG+TGG | - | chr3_1:94182774-94182793 | Msa0389400:CDS | 35.0% | |
| AAGAGAGACACAAAATTCGT+GGG | + | chr3_1:94182802-94182821 | None:intergenic | 35.0% | |
| ! | CATATTTCTCTTGTTTGGAC+AGG | + | chr3_1:94182837-94182856 | None:intergenic | 35.0% |
| ATCAAAGACTGAAAGCTTAG+AGG | - | chr3_1:94183107-94183126 | Msa0389400:CDS | 35.0% | |
| ATTAACCTTGCTACTACACC+AGG | + | chr3_1:94180486-94180505 | None:intergenic | 40.0% | |
| TGGTGTAGTAGCAAGGTTAA+TGG | - | chr3_1:94180485-94180504 | Msa0389400:CDS | 40.0% | |
| GGTGTAGTAGCAAGGTTAAT+GGG | - | chr3_1:94180486-94180505 | Msa0389400:CDS | 40.0% | |
| GTGTAGTAGCAAGGTTAATG+GGG | - | chr3_1:94180487-94180506 | Msa0389400:CDS | 40.0% | |
| ATTCACTTCCAAGCACCAAA+AGG | - | chr3_1:94180514-94180533 | Msa0389400:CDS | 40.0% | |
| TTCACTTCCAAGCACCAAAA+GGG | - | chr3_1:94180515-94180534 | Msa0389400:CDS | 40.0% | |
| !!! | TTAACAACCCTTTTGGTGCT+TGG | + | chr3_1:94180525-94180544 | None:intergenic | 40.0% |
| AGCACCAAAAGGGTTGTTAA+AGG | - | chr3_1:94180525-94180544 | Msa0389400:CDS | 40.0% | |
| ! | ATGCTGAAGTTTTCACACGT+CGG | + | chr3_1:94180635-94180654 | None:intergenic | 40.0% |
| GATGAAAATGGAACCCTTCT+TGG | + | chr3_1:94180849-94180868 | None:intergenic | 40.0% | |
| CAACTTCTTCATTGCCTACT+AGG | - | chr3_1:94180994-94181013 | Msa0389400:intron | 40.0% | |
| TTGCCTACTAGGCAAAAGAA+AGG | - | chr3_1:94181005-94181024 | Msa0389400:intron | 40.0% | |
| TGCCTACTAGGCAAAAGAAA+GGG | - | chr3_1:94181006-94181025 | Msa0389400:intron | 40.0% | |
| ! | AACCCTTTCTTTTGCCTAGT+AGG | + | chr3_1:94181011-94181030 | None:intergenic | 40.0% |
| GATTCAGACAGAACATAGCA+TGG | - | chr3_1:94181097-94181116 | Msa0389400:intron | 40.0% | |
| !! | CTCTATGGAGCTGATTTTTC+AGG | - | chr3_1:94181167-94181186 | Msa0389400:intron | 40.0% |
| TTACAAGCACCTTGCCTTTA+GGG | - | chr3_1:94182207-94182226 | Msa0389400:intron | 40.0% | |
| TCTCAGTTGAGGAGAGAAAT+GGG | + | chr3_1:94182758-94182777 | None:intergenic | 40.0% | |
| TTCTCAGTTGAGGAGAGAAA+TGG | + | chr3_1:94182759-94182778 | None:intergenic | 40.0% | |
| GAAGAGAGACACAAAATTCG+TGG | + | chr3_1:94182803-94182822 | None:intergenic | 40.0% | |
| ATCTTTATTGCCAGTGTCCT+TGG | - | chr3_1:94182942-94182961 | Msa0389400:CDS | 40.0% | |
| CTCTTCAACATCTTCTTCCA+AGG | + | chr3_1:94182962-94182981 | None:intergenic | 40.0% | |
| TTCTCTGTTGATGTCAGTGT+GGG | + | chr3_1:94183013-94183032 | None:intergenic | 40.0% | |
| GTGAGGAAATATTTAGGGGG+CGG | - | chr3_1:94181707-94181726 | Msa0389400:intron | 45.0% | |
| AAGGACCTTGGACTTCTACT+TGG | + | chr3_1:94181770-94181789 | None:intergenic | 45.0% | |
| GTTACAAGCACCTTGCCTTT+AGG | - | chr3_1:94182206-94182225 | Msa0389400:intron | 45.0% | |
| !! | CCTTTAGGGTGTGTTTGGTT+GGG | - | chr3_1:94182221-94182240 | Msa0389400:intron | 45.0% |
| CTCAGTTGAGGAGAGAAATG+GGG | + | chr3_1:94182757-94182776 | None:intergenic | 45.0% | |
| ACATCTTCTTCCAAGGACAC+TGG | + | chr3_1:94182955-94182974 | None:intergenic | 45.0% | |
| TCTCTGTTGATGTCAGTGTG+GGG | + | chr3_1:94183012-94183031 | None:intergenic | 45.0% | |
| CTTCTCTGTTGATGTCAGTG+TGG | + | chr3_1:94183014-94183033 | None:intergenic | 45.0% | |
| !!! | TTTTAAATTTAAAAATATGA+AGG | + | chr3_1:94181789-94181808 | None:intergenic | 5.0% |
| CTACTCCTGGTGTAGTAGCA+AGG | - | chr3_1:94180478-94180497 | Msa0389400:CDS | 50.0% | |
| CGTCACCAAGTAGAAGTCCA+AGG | - | chr3_1:94181762-94181781 | Msa0389400:intron | 50.0% | |
| CCAAACACACCCTAAAGGCA+AGG | + | chr3_1:94182219-94182238 | None:intergenic | 50.0% | |
| !! | CCTTGCCTTTAGGGTGTGTT+TGG | - | chr3_1:94182216-94182235 | Msa0389400:intron | 50.0% |
| !! | GCCTTTAGGGTGTGTTTGGT+TGG | - | chr3_1:94182220-94182239 | Msa0389400:intron | 50.0% |
| CCCAACCAAACACACCCTAA+AGG | + | chr3_1:94182224-94182243 | None:intergenic | 50.0% | |
| GACAGTGACTCGTGCGATGT+CGG | + | chr3_1:94181904-94181923 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 94180324 | 94183200 | 94180324 | ID=Msa0389400;Name=Msa0389400 |
| chr3_1 | mRNA | 94180324 | 94183200 | 94180324 | ID=Msa0389400-mRNA-1;Parent=Msa0389400;Name=Msa0389400-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|369 |
| chr3_1 | exon | 94182336 | 94183200 | 94182336 | ID=Msa0389400-mRNA-1:exon:26696;Parent=Msa0389400-mRNA-1 |
| chr3_1 | exon | 94180324 | 94180568 | 94180324 | ID=Msa0389400-mRNA-1:exon:26695;Parent=Msa0389400-mRNA-1 |
| chr3_1 | CDS | 94182336 | 94183200 | 94182336 | ID=Msa0389400-mRNA-1:cds;Parent=Msa0389400-mRNA-1 |
| chr3_1 | CDS | 94180324 | 94180568 | 94180324 | ID=Msa0389400-mRNA-1:cds;Parent=Msa0389400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
