AlfalfaGEDB | Msa0389400

M. sativa cultivar zhongmu-4 / Msa0389400

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389400	XP_003604660.1	89.744	390	14	5	1	369	1	385	0.0	653

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389400	G7JN31	89.744	390	14	5	1	369	1	385	0.0	653

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0106620	Msa0389400	0.811868	5.643429e-51	-8.615850e-47
Msa0237210	Msa0389400	0.800933	1.142100e-48	-8.615850e-47
Msa0389400	Msa0532920	0.925905	9.720399e-91	-8.615850e-47
Msa0389400	Msa0610250	0.801761	7.730017e-49	-8.615850e-47
Msa0389400	Msa0624950	0.964314	3.588967e-123	-8.615850e-47
Msa0389400	Msa0667720	0.880667	4.545026e-70	-8.615850e-47
Msa0389400	Msa0899970	0.803822	2.901967e-49	-8.615850e-47
Msa0389400	Msa0965080	0.803989	2.679148e-49	-8.615850e-47
Msa0389400	Msa0965290	0.811815	5.797821e-51	-8.615850e-47
Msa0389400	Msa0999680	0.810518	1.107895e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389400	MtrunA17_Chr4g0006251	89.744	390	14	5	1	369	1	385	0.0	653

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 46 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAAATTCAAGAAA+TGG	0.379420	3_1:-94183172	Msa0389400:CDS
AAACTTGAGAATAAAGAGCA+AGG	0.615672	3_1:-94182747	Msa0389400:CDS
AAGCTTAGAGGAAATTTGTT+TGG	0.383976	3_1:-94180383	Msa0389400:CDS
AAGTTAACTGATTTACTTCT+TGG	0.222003	3_1:+94182935	None:intergenic
AATTGTAGTTATTATGGATA+TGG	0.346675	3_1:-94182560	Msa0389400:CDS
ACTTCTTGGAACAGAATCTA+AGG	0.322435	3_1:+94182949	None:intergenic
AGCACCAAAAGGGTTGTTAA+AGG	0.333890	3_1:-94182977	Msa0389400:CDS
AGGTGTAATTGTAGTTATTA+TGG	0.236281	3_1:-94182566	Msa0389400:CDS
AGTTAAAAGATGAACCAAGA+AGG	0.554790	3_1:-94182670	Msa0389400:CDS
ATCAAAGACTGAAAGCTTAG+AGG	0.361130	3_1:-94180395	Msa0389400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGAGTTTGATCAAAACAT+GGG	-	chr3_1:94180603-94180622	Msa0389400:intron	30.0%
AAACTTGAGAATAAAGAGCA+AGG	-	chr3_1:94180755-94180774	Msa0389400:intron	30.0%
GTTAAGAAGGAGAAGAATAA+AGG	-	chr3_1:94180789-94180808	Msa0389400:intron	30.0%
AGTTAAAAGATGAACCAAGA+AGG	-	chr3_1:94180832-94180851	Msa0389400:intron	30.0%
GTTAAAAGATGAACCAAGAA+GGG	-	chr3_1:94180833-94180852	Msa0389400:intron	30.0%
TACTTGGAAGAAGATGAAAA+TGG	+	chr3_1:94180861-94180880	None:intergenic	30.0%
CTTCTTCCAAGTATAAATCA+AGG	-	chr3_1:94180868-94180887	Msa0389400:intron	30.0%
TCTAACCCTTGATTTATACT+TGG	+	chr3_1:94180877-94180896	None:intergenic	30.0%
TAGAGTGAGGAAATATTTAG+GGG	-	chr3_1:94181703-94181722	Msa0389400:intron	30.0%
AGAAGATTGCAAAAAGTTGT+GGG	-	chr3_1:94182775-94182794	Msa0389400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	94180324	94183200	94180324	ID=Msa0389400;Name=Msa0389400
chr3_1	mRNA	94180324	94183200	94180324	ID=Msa0389400-mRNA-1;Parent=Msa0389400;Name=Msa0389400-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|369
chr3_1	exon	94182336	94183200	94182336	ID=Msa0389400-mRNA-1:exon:26696;Parent=Msa0389400-mRNA-1
chr3_1	exon	94180324	94180568	94180324	ID=Msa0389400-mRNA-1:exon:26695;Parent=Msa0389400-mRNA-1
chr3_1	CDS	94182336	94183200	94182336	ID=Msa0389400-mRNA-1:cds;Parent=Msa0389400-mRNA-1
chr3_1	CDS	94180324	94180568	94180324	ID=Msa0389400-mRNA-1:cds;Parent=Msa0389400-mRNA-1

Gene Sequence

>Msa0389400

ATGGAAAAACAAGAAAATTCAAGAAATGGATGTTTCTCTAGTTTCATAAAAGTGTTACTTTGTGCTAGAAATGAAACTAGTCCACCAATATATCCATCTGAAAATGTTGAAACAATTCATCACAAAAAAGATAAACTTTTTGATGATTCTATTACTACTCCTGGTGTAGTAGCAAGGTTAATGGGGTTAGATTCACTTCCAAGCACCAAAAGGGTTGTTAAAGGAACAACCTTAGATTCTGTTCCAAGAAGTAAATCAGTTAACTTTGTTGATTACTTGCTTGAGTTTGATCAAAACATGGGAAGTCACCGACGTGTGAAAACTTCAGCATCTTTTAGAGAAGTTCCTTCAATGGTTGATAAGCAAAAAAGTTTCGTTTTTGTTCTTGATATTGATGATAAAAAAGGTAAGGTACAAGAAGAAAATGATGCAAACTTGAGAATAAAGAGCAAGGAAATTGTGAGAGTTAAGAAGGAGAAGAATAAAGGGAAGAACAAGAAAATTTCTAAGTTAAAAGATGAACCAAGAAGGGTTCCATTTTCATCTTCTTCCAAGTATAAATCAAGGGTTAGAGATTGTAGTAAAGATAAAGATTTTTCAAGTGTTTCTACAAGGTGTAATTGTAGTTATTATGGATATGGTAATGCTGGTTCAAGTTCAAGTTCATGTTCAACTTCTTCATTGCCTACTAGGCAAAAGAAAGGGTTTGTTGAACCAAAAATGAGGAACAAGGTGAAAAAACATGTGTCACCAAAGAATGTGTCACCAAAGAAGATTCAGACAGAACATAGCATGGAAAATCTTAGTCCTGTTTCAGTTCTAGATGTCAATGATTATGCTTTTCTCTATGGAGCTGATTTTTCAGTGTCCTTGGAAGAAGATGTTGAAGAGAAAGTAAACAATAATAAAGGATATGCTCCCCACACTGACATCAACAGAGAAGCAGAGTATTACTCAGACTTGATGTTGAAGCTTCGTTCTTTGACAGAAGAAAGTATAAGGGAGTCAGATTGCACATCAAAGACTGAAAGCTTAGAGGAAATTTGTTTGGTTTTTGAACAAACCATTTTTGATCATTTAATATTTGAGTTCTTAAATGAAGTTGTATAA

Protein sequence

>Msa0389400

MEKQENSRNGCFSSFIKVLLCARNETSPPIYPSENVETIHHKKDKLFDDSITTPGVVARLMGLDSLPSTKRVVKGTTLDSVPRSKSVNFVDYLLEFDQNMGSHRRVKTSASFREVPSMVDKQKSFVFVLDIDDKKGKVQEENDANLRIKSKEIVRVKKEKNKGKNKKISKLKDEPRRVPFSSSSKYKSRVRDCSKDKDFSSVSTRCNCSYYGYGNAGSSSSSCSTSSLPTRQKKGFVEPKMRNKVKKHVSPKNVSPKKIQTEHSMENLSPVSVLDVNDYAFLYGADFSVSLEEDVEEKVNNNKGYAPHTDINREAEYYSDLMLKLRSLTEESIRESDCTSKTESLEEICLVFEQTIFDHLIFEFLNEVV*