Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624950 | XP_003604660.1 | 89.744 | 390 | 14 | 5 | 1 | 369 | 1 | 385 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089980 | Msa0624950 | 0.800374 | 1.484815e-48 | -8.615850e-47 |
| Msa0090010 | Msa0624950 | 0.800227 | 1.590771e-48 | -8.615850e-47 |
| Msa0106620 | Msa0624950 | 0.820494 | 6.659936e-53 | -8.615850e-47 |
| Msa0624950 | Msa0667720 | 0.901415 | 2.741909e-78 | -8.615850e-47 |
| Msa0624950 | Msa0899970 | 0.805824 | 1.107878e-49 | -8.615850e-47 |
| Msa0624950 | Msa0965080 | 0.805012 | 1.639210e-49 | -8.615850e-47 |
| Msa0624950 | Msa0965290 | 0.816745 | 4.720291e-52 | -8.615850e-47 |
| Msa0624950 | Msa0999680 | 0.815089 | 1.105006e-51 | -8.615850e-47 |
| Msa0624950 | Msa1034500 | 0.805399 | 1.360015e-49 | -8.615850e-47 |
| Msa0624950 | Msa1340200 | 0.833363 | 5.568329e-56 | -8.615850e-47 |
| Msa0624950 | Msa1420640 | 0.983975 | 3.115381e-159 | -8.615850e-47 |
| Msa0624950 | Msa1464090 | 0.813526 | 2.447807e-51 | -8.615850e-47 |
| Msa0217700 | Msa0624950 | 0.801899 | 7.243463e-49 | -8.615850e-47 |
| Msa0237210 | Msa0624950 | 0.806741 | 7.100599e-50 | -8.615850e-47 |
| Msa0389400 | Msa0624950 | 0.964314 | 3.588967e-123 | -8.615850e-47 |
| Msa0315690 | Msa0624950 | 0.804885 | 1.742363e-49 | -8.615850e-47 |
| Msa0532920 | Msa0624950 | 0.940841 | 1.168951e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624950 | MtrunA17_Chr4g0006251 | 89.744 | 390 | 14 | 5 | 1 | 369 | 1 | 385 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTAACTGATTTACTTCT+TGG | 0.222003 | 4_3:-3781014 | None:intergenic |
| TTCTTTGGTGACACATTCTT+TGG | 0.227592 | 4_3:-3781521 | None:intergenic |
| AGGTGTAATTGTAGTTATTA+TGG | 0.236281 | 4_3:+3781383 | Msa0624950:CDS |
| TGTTCTGTCTGAATCTTCTT+TGG | 0.263057 | 4_3:-3781536 | None:intergenic |
| GATGAAAATGGAACCCTTCT+TGG | 0.264237 | 4_3:-3781293 | None:intergenic |
| CTTTGACAGAAGAAAGTATA+AGG | 0.276142 | 4_3:+3783498 | Msa0624950:CDS |
| GTTAAGAAGGAGAAGAATAA+AGG | 0.294047 | 4_3:+3781236 | Msa0624950:CDS |
| CAACTTCTTCATTGCCTACT+AGG | 0.319844 | 4_3:+3781441 | Msa0624950:CDS |
| ACTTCTTGGAACAGAATCTA+AGG | 0.322435 | 4_3:-3781000 | None:intergenic |
| TGTTCCTTTAACAACCCTTT+TGG | 0.323978 | 4_3:-3780976 | None:intergenic |
| AGCACCAAAAGGGTTGTTAA+AGG | 0.333890 | 4_3:+3780972 | Msa0624950:CDS |
| TGGTGTAGTAGCAAGGTTAA+TGG | 0.335546 | 4_3:+3780932 | Msa0624950:CDS |
| AATTGTAGTTATTATGGATA+TGG | 0.346675 | 4_3:+3781389 | Msa0624950:CDS |
| ATCAAAGACTGAAAGCTTAG+AGG | 0.361130 | 4_3:+3783535 | Msa0624950:CDS |
| GGTGTAGTAGCAAGGTTAAT+GGG | 0.365165 | 4_3:+3780933 | Msa0624950:CDS |
| TTAAGAAGGAGAAGAATAAA+GGG | 0.377122 | 4_3:+3781237 | Msa0624950:CDS |
| AAACAAGAAAATTCAAGAAA+TGG | 0.379420 | 4_3:+3780777 | Msa0624950:CDS |
| TACTTGGAAGAAGATGAAAA+TGG | 0.380603 | 4_3:-3781305 | None:intergenic |
| GAGAAAGTAAACAATAATAA+AGG | 0.383541 | 4_3:+3783407 | Msa0624950:CDS |
| AAGCTTAGAGGAAATTTGTT+TGG | 0.383976 | 4_3:+3783547 | Msa0624950:CDS |
| ATCTTTATTGCCAGTGTCCT+TGG | 0.392267 | 4_3:+3783370 | Msa0624950:intron |
| TTCTCTGTTGATGTCAGTGT+GGG | 0.417009 | 4_3:-3783438 | None:intergenic |
| GGAAATTGTGAGAGTTAAGA+AGG | 0.438622 | 4_3:+3781223 | Msa0624950:CDS |
| CTTCTTCCAAGTATAAATCA+AGG | 0.448989 | 4_3:+3781315 | Msa0624950:CDS |
| TTGACATCTAGAACTGAAAC+AGG | 0.458423 | 4_3:-3781578 | None:intergenic |
| CTCTTCAACATCTTCTTCCA+AGG | 0.463668 | 4_3:-3783387 | None:intergenic |
| GATGATTCTATTACTACTCC+TGG | 0.467242 | 4_3:+3780912 | Msa0624950:CDS |
| TCTAACCCTTGATTTATACT+TGG | 0.472162 | 4_3:-3781321 | None:intergenic |
| TATTATGGATATGGTAATGC+TGG | 0.473019 | 4_3:+3781398 | Msa0624950:CDS |
| TTGCCTACTAGGCAAAAGAA+AGG | 0.483545 | 4_3:+3781452 | Msa0624950:CDS |
| ATTCACTTCCAAGCACCAAA+AGG | 0.486866 | 4_3:+3780961 | Msa0624950:CDS |
| TTCACTTCCAAGCACCAAAA+GGG | 0.495119 | 4_3:+3780962 | Msa0624950:CDS |
| GCTTGAGTTTGATCAAAACA+TGG | 0.523774 | 4_3:+3781049 | Msa0624950:CDS |
| TTTGACAGAAGAAAGTATAA+GGG | 0.526153 | 4_3:+3783499 | Msa0624950:CDS |
| TGCCTACTAGGCAAAAGAAA+GGG | 0.548532 | 4_3:+3781453 | Msa0624950:CDS |
| AGTTAAAAGATGAACCAAGA+AGG | 0.554790 | 4_3:+3781279 | Msa0624950:CDS |
| CTTGAGTTTGATCAAAACAT+GGG | 0.565956 | 4_3:+3781050 | Msa0624950:CDS |
| CTTCTCTGTTGATGTCAGTG+TGG | 0.574065 | 4_3:-3783439 | None:intergenic |
| GTTAAAAGATGAACCAAGAA+GGG | 0.583184 | 4_3:+3781280 | Msa0624950:CDS |
| GATTCAGACAGAACATAGCA+TGG | 0.587606 | 4_3:+3781544 | Msa0624950:CDS |
| TTCTTCCAAGTATAAATCAA+GGG | 0.598400 | 4_3:+3781316 | Msa0624950:CDS |
| CTACTCCTGGTGTAGTAGCA+AGG | 0.604802 | 4_3:+3780925 | Msa0624950:CDS |
| AAACTTGAGAATAAAGAGCA+AGG | 0.615672 | 4_3:+3781202 | Msa0624950:CDS |
| ATTAACCTTGCTACTACACC+AGG | 0.623143 | 4_3:-3780930 | None:intergenic |
| GTGTAGTAGCAAGGTTAATG+GGG | 0.625800 | 4_3:+3780934 | Msa0624950:CDS |
| TCTCTGTTGATGTCAGTGTG+GGG | 0.670330 | 4_3:-3783437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTGATTTAATATTTTTAA+TGG | + | chr4_3:3781808-3781827 | Msa0624950:intron | 10.0% |
| !!! | AAATATTAGATTTTTTAGTA+GGG | - | chr4_3:3782816-3782835 | None:intergenic | 10.0% |
| !! | AAATATTAAATGATCAAAAA+TGG | - | chr4_3:3783585-3783604 | None:intergenic | 10.0% |
| !! | AAAATAAAAATTAGCAACAA+GGG | - | chr4_3:3781654-3781673 | None:intergenic | 15.0% |
| !! | AAAAATAAAAATTAGCAACA+AGG | - | chr4_3:3781655-3781674 | None:intergenic | 15.0% |
| !!! | AATTCATTCCAAAATATTTT+AGG | - | chr4_3:3781758-3781777 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAAACATTGAG+AGG | - | chr4_3:3782015-3782034 | None:intergenic | 15.0% |
| !!! | TAAAAATAATTTTTAGAGTG+AGG | + | chr4_3:3782137-3782156 | Msa0624950:intron | 15.0% |
| !!! | TTAACTTTAAAAGAAAAAAG+AGG | + | chr4_3:3782279-3782298 | Msa0624950:intron | 15.0% |
| !!! | CAAATATTAGATTTTTTAGT+AGG | - | chr4_3:3782817-3782836 | None:intergenic | 15.0% |
| !! | AAACAAGAAAATTCAAGAAA+TGG | + | chr4_3:3780777-3780796 | Msa0624950:CDS | 20.0% |
| !!! | CTTGATATTGATGATAAAAA+AGG | + | chr4_3:3781155-3781174 | Msa0624950:CDS | 20.0% |
| !!! | TATTGATGATAAAAAAGGTA+AGG | + | chr4_3:3781160-3781179 | Msa0624950:CDS | 20.0% |
| !! | AATTGTAGTTATTATGGATA+TGG | + | chr4_3:3781389-3781408 | Msa0624950:CDS | 20.0% |
| !! | TTGTGAATTACTTATTTACA+AGG | + | chr4_3:3781694-3781713 | Msa0624950:intron | 20.0% |
| !!! | ATTCCAAAATATTTTAGGTT+CGG | - | chr4_3:3781753-3781772 | None:intergenic | 20.0% |
| !!! | AAATGCATTTTTAATCAAAC+AGG | - | chr4_3:3782566-3782585 | None:intergenic | 20.0% |
| !! | TAACTGTAATCAAATATTGA+GGG | - | chr4_3:3782636-3782655 | None:intergenic | 20.0% |
| !! | GTCACAATTAAATAATCAAA+TGG | - | chr4_3:3782931-3782950 | None:intergenic | 20.0% |
| !!! | ATATTCTTTGAAAGGATATT+TGG | + | chr4_3:3782952-3782971 | Msa0624950:intron | 20.0% |
| !! | GAGAAAGTAAACAATAATAA+AGG | + | chr4_3:3783407-3783426 | Msa0624950:CDS | 20.0% |
| !! | ACATTTTCAGATGGATATAT+TGG | - | chr4_3:3780858-3780877 | None:intergenic | 25.0% |
| !! | ATTGTTTCAACATTTTCAGA+TGG | - | chr4_3:3780867-3780886 | None:intergenic | 25.0% |
| !! | AAGTTAACTGATTTACTTCT+TGG | - | chr4_3:3781017-3781036 | None:intergenic | 25.0% |
| ! | TTAAGAAGGAGAAGAATAAA+GGG | + | chr4_3:3781237-3781256 | Msa0624950:CDS | 25.0% |
| ! | TTCTTCCAAGTATAAATCAA+GGG | + | chr4_3:3781316-3781335 | Msa0624950:CDS | 25.0% |
| !!! | ATTTTTCAAGTGTTTCTACA+AGG | + | chr4_3:3781363-3781382 | Msa0624950:CDS | 25.0% |
| ! | AGGTGTAATTGTAGTTATTA+TGG | + | chr4_3:3781383-3781402 | Msa0624950:CDS | 25.0% |
| !! | AATGATTATGCTTTTCTCTA+TGG | + | chr4_3:3781599-3781618 | Msa0624950:CDS | 25.0% |
| ! | AAGTAATTCACAAACTAGAA+TGG | - | chr4_3:3781687-3781706 | None:intergenic | 25.0% |
| ! | GAATTACTTATTTACAAGGT+TGG | + | chr4_3:3781698-3781717 | Msa0624950:intron | 25.0% |
| !! | TTTCCGAACCTAAAATATTT+TGG | + | chr4_3:3781747-3781766 | Msa0624950:intron | 25.0% |
| !! | TTCTAACAATTTAGAGTCAT+TGG | + | chr4_3:3781863-3781882 | Msa0624950:intron | 25.0% |
| !! | TCTAACAATTTAGAGTCATT+GGG | + | chr4_3:3781864-3781883 | Msa0624950:intron | 25.0% |
| !! | ATGAATTGTGACTTTTGTAT+TGG | + | chr4_3:3781983-3782002 | Msa0624950:intron | 25.0% |
| ! | GTTGCGTATATAGTAAATTA+AGG | - | chr4_3:3782105-3782124 | None:intergenic | 25.0% |
| !! | TTTAGAGTGAGGAAATATTT+AGG | + | chr4_3:3782148-3782167 | Msa0624950:intron | 25.0% |
| ! | TTAGAGTGAGGAAATATTTA+GGG | + | chr4_3:3782149-3782168 | Msa0624950:intron | 25.0% |
| ! | TTTAAAAATATGAAGGACCT+TGG | - | chr4_3:3782229-3782248 | None:intergenic | 25.0% |
| ! | AAAGAGGAAACAAACATATA+CGG | + | chr4_3:3782295-3782314 | Msa0624950:intron | 25.0% |
| ! | GTAACTGTAATCAAATATTG+AGG | - | chr4_3:3782637-3782656 | None:intergenic | 25.0% |
| ! | TTGTGACAATATTCTTTGAA+AGG | + | chr4_3:3782944-3782963 | Msa0624950:intron | 25.0% |
| !!! | CGTAGTCTTTTTTTATTAAC+AGG | - | chr4_3:3783016-3783035 | None:intergenic | 25.0% |
| ! | TTGAGTAAAAAAGTGAACAA+AGG | + | chr4_3:3783138-3783157 | Msa0624950:intron | 25.0% |
| ! | TGAGTAAAAAAGTGAACAAA+GGG | + | chr4_3:3783139-3783158 | Msa0624950:intron | 25.0% |
| !! | TTTGACTTTAACAGTTTGTT+TGG | - | chr4_3:3783338-3783357 | None:intergenic | 25.0% |
| ! | ACAAACTGTTAAAGTCAAAA+AGG | + | chr4_3:3783339-3783358 | Msa0624950:intron | 25.0% |
| !! | TTTGACAGAAGAAAGTATAA+GGG | + | chr4_3:3783499-3783518 | Msa0624950:CDS | 25.0% |
| ! | TTTTCAGATGGATATATTGG+TGG | - | chr4_3:3780855-3780874 | None:intergenic | 30.0% |
| CTTGAGTTTGATCAAAACAT+GGG | + | chr4_3:3781050-3781069 | Msa0624950:CDS | 30.0% | |
| !! | TTTTAGAGAAGTTCCTTCAA+TGG | + | chr4_3:3781103-3781122 | Msa0624950:CDS | 30.0% |
| ! | TTTTGCTTATCAACCATTGA+AGG | - | chr4_3:3781119-3781138 | None:intergenic | 30.0% |
| AAACTTGAGAATAAAGAGCA+AGG | + | chr4_3:3781202-3781221 | Msa0624950:CDS | 30.0% | |
| GTTAAGAAGGAGAAGAATAA+AGG | + | chr4_3:3781236-3781255 | Msa0624950:CDS | 30.0% | |
| AGTTAAAAGATGAACCAAGA+AGG | + | chr4_3:3781279-3781298 | Msa0624950:CDS | 30.0% | |
| GTTAAAAGATGAACCAAGAA+GGG | + | chr4_3:3781280-3781299 | Msa0624950:CDS | 30.0% | |
| TACTTGGAAGAAGATGAAAA+TGG | - | chr4_3:3781308-3781327 | None:intergenic | 30.0% | |
| CTTCTTCCAAGTATAAATCA+AGG | + | chr4_3:3781315-3781334 | Msa0624950:CDS | 30.0% | |
| TCTAACCCTTGATTTATACT+TGG | - | chr4_3:3781324-3781343 | None:intergenic | 30.0% | |
| ! | TATTATGGATATGGTAATGC+TGG | + | chr4_3:3781398-3781417 | Msa0624950:CDS | 30.0% |
| ! | TTAGCATCTAGAACTTTCAA+TGG | + | chr4_3:3781781-3781800 | Msa0624950:intron | 30.0% |
| TAGAGTGAGGAAATATTTAG+GGG | + | chr4_3:3782150-3782169 | Msa0624950:intron | 30.0% | |
| TCTTTACAATTTCTCTTCCA+AGG | - | chr4_3:3782670-3782689 | None:intergenic | 30.0% | |
| TTGGAAGAGAAATTGTAAAG+AGG | + | chr4_3:3782669-3782688 | Msa0624950:intron | 30.0% | |
| ! | AAGTGAACAAAGGGTATATA+TGG | + | chr4_3:3783148-3783167 | Msa0624950:intron | 30.0% |
| AGAAGATTGCAAAAAGTTGT+GGG | + | chr4_3:3783214-3783233 | Msa0624950:intron | 30.0% | |
| GATAGCATATTTCTCTTGTT+TGG | - | chr4_3:3783265-3783284 | None:intergenic | 30.0% | |
| ! | ACTTTAACAGTTTGTTTGGT+TGG | - | chr4_3:3783334-3783353 | None:intergenic | 30.0% |
| ! | CTTTGACAGAAGAAAGTATA+AGG | + | chr4_3:3783498-3783517 | Msa0624950:CDS | 30.0% |
| ! | AAGCTTAGAGGAAATTTGTT+TGG | + | chr4_3:3783547-3783566 | Msa0624950:CDS | 30.0% |
| GATGATTCTATTACTACTCC+TGG | + | chr4_3:3780912-3780931 | Msa0624950:CDS | 35.0% | |
| ! | TGTTCCTTTAACAACCCTTT+TGG | - | chr4_3:3780979-3780998 | None:intergenic | 35.0% |
| ACTTCTTGGAACAGAATCTA+AGG | - | chr4_3:3781003-3781022 | None:intergenic | 35.0% | |
| GCTTGAGTTTGATCAAAACA+TGG | + | chr4_3:3781049-3781068 | Msa0624950:CDS | 35.0% | |
| GGAAATTGTGAGAGTTAAGA+AGG | + | chr4_3:3781223-3781242 | Msa0624950:CDS | 35.0% | |
| !! | GGTTTGTTGAACCAAAAATG+AGG | + | chr4_3:3781474-3781493 | Msa0624950:CDS | 35.0% |
| TGAACCAAAAATGAGGAACA+AGG | + | chr4_3:3781481-3781500 | Msa0624950:CDS | 35.0% | |
| ! | TTCACCTTGTTCCTCATTTT+TGG | - | chr4_3:3781488-3781507 | None:intergenic | 35.0% |
| ! | TTCTTTGGTGACACATTCTT+TGG | - | chr4_3:3781524-3781543 | None:intergenic | 35.0% |
| TGTTCTGTCTGAATCTTCTT+TGG | - | chr4_3:3781539-3781558 | None:intergenic | 35.0% | |
| ! | TTGACATCTAGAACTGAAAC+AGG | - | chr4_3:3781581-3781600 | None:intergenic | 35.0% |
| ! | TCCTTACACAACTTGTTTAC+TGG | + | chr4_3:3781902-3781921 | Msa0624950:intron | 35.0% |
| ACCAGTAAACAAGTTGTGTA+AGG | - | chr4_3:3781906-3781925 | None:intergenic | 35.0% | |
| ! | TTACACAACTTGTTTACTGG+TGG | + | chr4_3:3781905-3781924 | Msa0624950:intron | 35.0% |
| AGAGTGAGGAAATATTTAGG+GGG | + | chr4_3:3782151-3782170 | Msa0624950:intron | 35.0% | |
| CAATGTTGCTCTTTGTAAGA+AGG | - | chr4_3:3782421-3782440 | None:intergenic | 35.0% | |
| AGAGTAGATTGATGTGTTGT+TGG | + | chr4_3:3782727-3782746 | Msa0624950:intron | 35.0% | |
| AGACTACGAGTATTATTCTG+TGG | + | chr4_3:3783028-3783047 | Msa0624950:intron | 35.0% | |
| ! | TTTTGCAATCTTCTCAGTTG+AGG | - | chr4_3:3783208-3783227 | None:intergenic | 35.0% |
| GAGAAGATTGCAAAAAGTTG+TGG | + | chr4_3:3783213-3783232 | Msa0624950:intron | 35.0% | |
| CATGAGAACACAAAATTCGT+GGG | - | chr4_3:3783241-3783260 | None:intergenic | 35.0% | |
| ACATGAGAACACAAAATTCG+TGG | - | chr4_3:3783242-3783261 | None:intergenic | 35.0% | |
| TTGTTTGGTTGGAGAGAAAT+AGG | - | chr4_3:3783323-3783342 | None:intergenic | 35.0% | |
| ATCAAAGACTGAAAGCTTAG+AGG | + | chr4_3:3783535-3783554 | Msa0624950:CDS | 35.0% | |
| ATTAACCTTGCTACTACACC+AGG | - | chr4_3:3780933-3780952 | None:intergenic | 40.0% | |
| TGGTGTAGTAGCAAGGTTAA+TGG | + | chr4_3:3780932-3780951 | Msa0624950:CDS | 40.0% | |
| GGTGTAGTAGCAAGGTTAAT+GGG | + | chr4_3:3780933-3780952 | Msa0624950:CDS | 40.0% | |
| GTGTAGTAGCAAGGTTAATG+GGG | + | chr4_3:3780934-3780953 | Msa0624950:CDS | 40.0% | |
| ATTCACTTCCAAGCACCAAA+AGG | + | chr4_3:3780961-3780980 | Msa0624950:CDS | 40.0% | |
| TTCACTTCCAAGCACCAAAA+GGG | + | chr4_3:3780962-3780981 | Msa0624950:CDS | 40.0% | |
| !!! | TTAACAACCCTTTTGGTGCT+TGG | - | chr4_3:3780972-3780991 | None:intergenic | 40.0% |
| AGCACCAAAAGGGTTGTTAA+AGG | + | chr4_3:3780972-3780991 | Msa0624950:CDS | 40.0% | |
| ! | ATGCTGAAGTTTTCACACGT+CGG | - | chr4_3:3781082-3781101 | None:intergenic | 40.0% |
| GATGAAAATGGAACCCTTCT+TGG | - | chr4_3:3781296-3781315 | None:intergenic | 40.0% | |
| CAACTTCTTCATTGCCTACT+AGG | + | chr4_3:3781441-3781460 | Msa0624950:CDS | 40.0% | |
| TTGCCTACTAGGCAAAAGAA+AGG | + | chr4_3:3781452-3781471 | Msa0624950:CDS | 40.0% | |
| TGCCTACTAGGCAAAAGAAA+GGG | + | chr4_3:3781453-3781472 | Msa0624950:CDS | 40.0% | |
| ! | AACCCTTTCTTTTGCCTAGT+AGG | - | chr4_3:3781458-3781477 | None:intergenic | 40.0% |
| GATTCAGACAGAACATAGCA+TGG | + | chr4_3:3781544-3781563 | Msa0624950:CDS | 40.0% | |
| !! | CTCTATGGAGCTGATTTTTC+AGG | + | chr4_3:3781614-3781633 | Msa0624950:CDS | 40.0% |
| ACAATTTCTCTTCCAAGGCA+AGG | - | chr4_3:3782665-3782684 | None:intergenic | 40.0% | |
| TCTCAGTTGAGGAGAGAAAT+GGG | - | chr4_3:3783197-3783216 | None:intergenic | 40.0% | |
| TTCTCAGTTGAGGAGAGAAA+TGG | - | chr4_3:3783198-3783217 | None:intergenic | 40.0% | |
| ATCTTTATTGCCAGTGTCCT+TGG | + | chr4_3:3783370-3783389 | Msa0624950:intron | 40.0% | |
| CTCTTCAACATCTTCTTCCA+AGG | - | chr4_3:3783390-3783409 | None:intergenic | 40.0% | |
| TTCTCTGTTGATGTCAGTGT+GGG | - | chr4_3:3783441-3783460 | None:intergenic | 40.0% | |
| GTGAGGAAATATTTAGGGGG+CGG | + | chr4_3:3782154-3782173 | Msa0624950:intron | 45.0% | |
| AAGGACCTTGGACTTCTACT+TGG | - | chr4_3:3782217-3782236 | None:intergenic | 45.0% | |
| CTCAGTTGAGGAGAGAAATG+GGG | - | chr4_3:3783196-3783215 | None:intergenic | 45.0% | |
| ACATCTTCTTCCAAGGACAC+TGG | - | chr4_3:3783383-3783402 | None:intergenic | 45.0% | |
| TCTCTGTTGATGTCAGTGTG+GGG | - | chr4_3:3783440-3783459 | None:intergenic | 45.0% | |
| CTTCTCTGTTGATGTCAGTG+TGG | - | chr4_3:3783442-3783461 | None:intergenic | 45.0% | |
| !!! | TTTTAAATTTAAAAATATGA+AGG | - | chr4_3:3782236-3782255 | None:intergenic | 5.0% |
| CTACTCCTGGTGTAGTAGCA+AGG | + | chr4_3:3780925-3780944 | Msa0624950:CDS | 50.0% | |
| CGTCACCAAGTAGAAGTCCA+AGG | + | chr4_3:3782209-3782228 | Msa0624950:intron | 50.0% | |
| CAGTTACAAGCACCTTGCCT+TGG | + | chr4_3:3782650-3782669 | Msa0624950:intron | 50.0% | |
| GACAGTGACTCGTGCGATGT+CGG | - | chr4_3:3782351-3782370 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 3780771 | 3783628 | 3780771 | ID=Msa0624950;Name=Msa0624950 |
| chr4_3 | mRNA | 3780771 | 3783628 | 3780771 | ID=Msa0624950-mRNA-1;Parent=Msa0624950;Name=Msa0624950-mRNA-1;_AED=0.02;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|369 |
| chr4_3 | exon | 3780771 | 3781635 | 3780771 | ID=Msa0624950-mRNA-1:exon:882;Parent=Msa0624950-mRNA-1 |
| chr4_3 | exon | 3783384 | 3783628 | 3783384 | ID=Msa0624950-mRNA-1:exon:883;Parent=Msa0624950-mRNA-1 |
| chr4_3 | CDS | 3780771 | 3781635 | 3780771 | ID=Msa0624950-mRNA-1:cds;Parent=Msa0624950-mRNA-1 |
| chr4_3 | CDS | 3783384 | 3783628 | 3783384 | ID=Msa0624950-mRNA-1:cds;Parent=Msa0624950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
