Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537860 | XP_039688822.1 | 85.047 | 107 | 16 | 0 | 1 | 107 | 1 | 107 | 6.71e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537860 | sp|A0AT31|NLTP5_LENCU | 75.238 | 105 | 26 | 0 | 3 | 107 | 4 | 108 | 2.22e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537860 | G7JI87 | 85.047 | 107 | 16 | 0 | 1 | 107 | 1 | 107 | 3.21e-57 | 182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0537860 | Msa0537870 | 0.808325 | 3.273329e-50 | -8.615850e-47 |
| Msa0537860 | Msa0538260 | 0.812485 | 4.140709e-51 | -8.615850e-47 |
| Msa0537860 | Msa0538270 | 0.834249 | 3.343546e-56 | -8.615850e-47 |
| Msa0537860 | Msa0634420 | 0.861980 | 7.003323e-64 | -8.615850e-47 |
| Msa0537860 | Msa1347030 | 0.817162 | 3.803603e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537860 | MtrunA17_Chr4g0012961 | 85.047 | 107 | 16 | 0 | 1 | 107 | 1 | 107 | 6.18e-61 | 182 |
| Msa0537860 | MtrunA17_Chr4g0012991 | 85.047 | 107 | 16 | 0 | 1 | 107 | 56 | 162 | 2.22e-60 | 182 |
| Msa0537860 | MtrunA17_Chr4g0013001 | 84.112 | 107 | 17 | 0 | 1 | 107 | 1 | 107 | 3.94e-60 | 180 |
| Msa0537860 | MtrunA17_Chr4g0012951 | 81.308 | 107 | 20 | 0 | 1 | 107 | 1 | 107 | 1.79e-58 | 176 |
| Msa0537860 | MtrunA17_Chr4g0013261 | 63.303 | 109 | 37 | 2 | 1 | 107 | 1 | 108 | 5.01e-41 | 132 |
| Msa0537860 | MtrunA17_Chr4g0013251 | 63.303 | 109 | 37 | 2 | 1 | 107 | 1 | 108 | 3.63e-40 | 130 |
| Msa0537860 | MtrunA17_Chr4g0013211 | 47.273 | 110 | 58 | 0 | 1 | 110 | 1 | 110 | 3.24e-30 | 104 |
| Msa0537860 | MtrunA17_Chr7g0244691 | 46.789 | 109 | 55 | 2 | 4 | 110 | 7 | 114 | 7.51e-30 | 103 |
| Msa0537860 | MtrunA17_Chr4g0012901 | 47.664 | 107 | 54 | 2 | 1 | 105 | 5 | 111 | 2.95e-28 | 99.8 |
| Msa0537860 | MtrunA17_Chr7g0244841 | 44.037 | 109 | 57 | 3 | 4 | 110 | 7 | 113 | 2.25e-26 | 95.1 |
| Msa0537860 | MtrunA17_Chr7g0244831 | 46.078 | 102 | 51 | 3 | 12 | 110 | 14 | 114 | 2.64e-26 | 94.7 |
| Msa0537860 | MtrunA17_Chr7g0244641 | 39.450 | 109 | 64 | 2 | 4 | 110 | 7 | 115 | 3.12e-25 | 92.0 |
| Msa0537860 | MtrunA17_Chr4g0012931 | 41.593 | 113 | 63 | 1 | 1 | 110 | 1 | 113 | 4.33e-24 | 89.7 |
| Msa0537860 | MtrunA17_Chr7g0244671 | 37.615 | 109 | 66 | 1 | 4 | 110 | 7 | 115 | 7.47e-24 | 89.4 |
| Msa0537860 | MtrunA17_Chr2g0309241 | 42.991 | 107 | 59 | 2 | 1 | 106 | 1 | 106 | 4.28e-23 | 86.7 |
| Msa0537860 | MtrunA17_Chr4g0012891 | 40.708 | 113 | 60 | 3 | 5 | 110 | 9 | 121 | 6.99e-23 | 86.3 |
| Msa0537860 | MtrunA17_Chr7g0244811 | 37.719 | 114 | 69 | 1 | 1 | 112 | 5 | 118 | 9.76e-22 | 83.2 |
| Msa0537860 | MtrunA17_Chr4g0012921 | 40.708 | 113 | 64 | 2 | 1 | 110 | 1 | 113 | 4.58e-20 | 79.0 |
| Msa0537860 | MtrunA17_Chr7g0244681 | 41.284 | 109 | 61 | 2 | 4 | 110 | 7 | 114 | 4.25e-19 | 76.6 |
| Msa0537860 | MtrunA17_Chr7g0244741 | 40.000 | 110 | 63 | 1 | 4 | 110 | 7 | 116 | 6.58e-19 | 76.3 |
| Msa0537860 | MtrunA17_Chr3g0107481 | 37.255 | 102 | 63 | 1 | 5 | 105 | 3 | 104 | 6.18e-17 | 70.9 |
| Msa0537860 | MtrunA17_Chr7g0233431 | 31.193 | 109 | 74 | 1 | 5 | 112 | 20 | 128 | 7.77e-17 | 70.9 |
| Msa0537860 | MtrunA17_Chr7g0244821 | 37.615 | 109 | 64 | 4 | 4 | 110 | 7 | 113 | 2.63e-16 | 69.7 |
| Msa0537860 | MtrunA17_Chr1g0165761 | 41.667 | 108 | 60 | 2 | 5 | 110 | 8 | 114 | 3.07e-16 | 69.3 |
| Msa0537860 | MtrunA17_Chr7g0244761 | 37.615 | 109 | 65 | 3 | 4 | 110 | 32 | 139 | 4.82e-16 | 69.3 |
| Msa0537860 | MtrunA17_Chr7g0244721 | 34.862 | 109 | 69 | 1 | 4 | 110 | 7 | 115 | 7.61e-16 | 68.2 |
| Msa0537860 | MtrunA17_Chr7g0244791 | 36.036 | 111 | 64 | 2 | 4 | 110 | 12 | 119 | 2.43e-15 | 67.0 |
| Msa0537860 | MtrunA17_Chr7g0244661 | 38.739 | 111 | 60 | 3 | 4 | 112 | 7 | 111 | 2.93e-14 | 63.9 |
| Msa0537860 | MtrunA17_Chr3g0105001 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 2.88e-13 | 61.6 |
| Msa0537860 | MtrunA17_Chr3g0104981 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 6.32e-13 | 60.8 |
| Msa0537860 | MtrunA17_Chr3g0104971 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 6.39e-13 | 60.8 |
| Msa0537860 | MtrunA17_Chr7g0244751 | 33.333 | 108 | 71 | 1 | 4 | 110 | 7 | 114 | 6.80e-13 | 60.5 |
| Msa0537860 | MtrunA17_Chr3g0105021 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 7.26e-13 | 60.5 |
| Msa0537860 | MtrunA17_Chr3g0105011 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 7.26e-13 | 60.5 |
| Msa0537860 | MtrunA17_Chr3g0104991 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 1.64e-12 | 59.7 |
| Msa0537860 | MtrunA17_Chr3g0104951 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.71e-12 | 59.7 |
| Msa0537860 | MtrunA17_Chr3g0104931 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.71e-12 | 59.7 |
| Msa0537860 | MtrunA17_Chr3g0104941 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.71e-12 | 59.7 |
| Msa0537860 | MtrunA17_Chr3g0095931 | 31.683 | 101 | 63 | 3 | 10 | 105 | 13 | 112 | 1.86e-12 | 59.3 |
| Msa0537860 | MtrunA17_Chr3g0104921 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 2.34e-12 | 58.9 |
| Msa0537860 | MtrunA17_Chr3g0104911 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 2.34e-12 | 58.9 |
| Msa0537860 | MtrunA17_Chr3g0105031 | 36.190 | 105 | 59 | 4 | 9 | 106 | 2 | 105 | 3.36e-12 | 58.5 |
| Msa0537860 | MtrunA17_Chr7g0244731 | 48.529 | 68 | 32 | 2 | 25 | 90 | 57 | 123 | 3.38e-12 | 59.7 |
| Msa0537860 | MtrunA17_Chr3g0104901 | 34.211 | 114 | 64 | 5 | 1 | 104 | 1 | 113 | 3.98e-12 | 58.5 |
| Msa0537860 | MtrunA17_Chr3g0105041 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 5.67e-12 | 58.2 |
| Msa0537860 | MtrunA17_Chr3g0104961 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.03e-11 | 57.8 |
| Msa0537860 | MtrunA17_Chr3g0095991 | 31.481 | 108 | 66 | 4 | 4 | 104 | 7 | 113 | 1.32e-11 | 57.4 |
| Msa0537860 | MtrunA17_Chr3g0101431 | 34.951 | 103 | 59 | 4 | 9 | 104 | 11 | 112 | 2.61e-11 | 56.6 |
| Msa0537860 | MtrunA17_Chr3g0095951 | 31.481 | 108 | 66 | 4 | 4 | 104 | 7 | 113 | 3.52e-11 | 56.2 |
| Msa0537860 | MtrunA17_Chr3g0096021 | 31.481 | 108 | 66 | 4 | 4 | 104 | 7 | 113 | 4.18e-11 | 55.8 |
| Msa0537860 | MtrunA17_Chr3g0096031 | 31.481 | 108 | 66 | 4 | 4 | 104 | 7 | 113 | 6.01e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537860 | AT5G59320.1 | 56.566 | 99 | 41 | 1 | 8 | 106 | 10 | 106 | 6.82e-33 | 111 |
| Msa0537860 | AT2G38540.1 | 61.111 | 108 | 36 | 6 | 4 | 107 | 5 | 110 | 1.22e-32 | 111 |
| Msa0537860 | AT5G59310.1 | 54.000 | 100 | 41 | 2 | 8 | 107 | 10 | 104 | 1.62e-29 | 103 |
| Msa0537860 | AT2G38530.1 | 57.009 | 107 | 42 | 4 | 4 | 107 | 5 | 110 | 1.80e-28 | 100 |
| Msa0537860 | AT3G51600.1 | 52.336 | 107 | 47 | 4 | 4 | 107 | 5 | 110 | 1.98e-26 | 95.5 |
| Msa0537860 | AT2G15050.3 | 46.154 | 104 | 52 | 3 | 4 | 103 | 5 | 108 | 4.63e-26 | 94.7 |
| Msa0537860 | AT2G15050.2 | 46.154 | 104 | 52 | 3 | 4 | 103 | 5 | 108 | 4.79e-26 | 94.4 |
| Msa0537860 | AT2G15050.1 | 46.154 | 104 | 52 | 3 | 4 | 103 | 5 | 108 | 7.19e-26 | 94.4 |
| Msa0537860 | AT3G51590.1 | 42.593 | 108 | 59 | 3 | 6 | 112 | 8 | 113 | 7.65e-24 | 89.0 |
| Msa0537860 | AT4G33355.1 | 48.454 | 97 | 49 | 1 | 5 | 101 | 10 | 105 | 1.05e-23 | 88.6 |
| Msa0537860 | AT4G33355.2 | 48.454 | 97 | 49 | 1 | 5 | 101 | 10 | 105 | 1.13e-23 | 88.6 |
| Msa0537860 | AT5G01870.1 | 40.777 | 103 | 55 | 2 | 9 | 105 | 4 | 106 | 9.67e-20 | 78.6 |
| Msa0537860 | AT2G18370.1 | 41.573 | 89 | 50 | 2 | 15 | 102 | 16 | 103 | 2.97e-16 | 69.3 |
| Msa0537860 | AT3G08770.1 | 42.553 | 94 | 50 | 3 | 22 | 112 | 18 | 110 | 3.25e-16 | 69.3 |
| Msa0537860 | AT3G08770.2 | 42.553 | 94 | 50 | 3 | 22 | 112 | 18 | 110 | 4.35e-16 | 68.9 |
Find 37 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTGCTCGTGCTATTTC+TGG | 0.185000 | 4_1:-16885424 | Msa0537860:CDS |
| GGTGGAGGCTCGTGCTATTA+TGG | 0.316778 | 4_1:-16884802 | Msa0537860:three_prime_UTR |
| GGCGCAGCTTCTTCTCTTCC+TGG | 0.339122 | 4_1:-16885391 | Msa0537860:CDS |
| ACTTAAAATTTCCATAACTT+TGG | 0.352472 | 4_1:+16884864 | None:intergenic |
| CCATGCATTGGATATCTTAG+AGG | 0.354250 | 4_1:-16885547 | Msa0537860:CDS |
| GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | 4_1:-16885412 | Msa0537860:CDS |
| TATCCTCTTACCAGACTTGT+TGG | 0.411234 | 4_1:-16884776 | Msa0537860:three_prime_UTR |
| TTGCAAGCAGCCTGACGGTC+AGG | 0.421711 | 4_1:+16885457 | None:intergenic |
| CACCACCACGCCTGACCGTC+AGG | 0.443141 | 4_1:-16885467 | Msa0537860:CDS |
| ACGGTCAGGCGTGGTGGTGG+CGG | 0.445777 | 4_1:+16885471 | None:intergenic |
| GTCAGGCGTGGTGGTGGCGG+CGG | 0.446691 | 4_1:+16885474 | None:intergenic |
| GGTGCTCTTTCTCCATGCAT+TGG | 0.474474 | 4_1:-16885559 | Msa0537860:CDS |
| ATATTGCAGCTCCAAAGTTA+TGG | 0.477723 | 4_1:-16884875 | Msa0537860:CDS |
| GTGGAGGTACTGATCTTGTA+TGG | 0.494316 | 4_1:+16885349 | None:intergenic |
| GAAGGACTATCCAACAAGTC+TGG | 0.494518 | 4_1:+16884766 | None:intergenic |
| TTCACTCCACCACAGCATGC+TGG | 0.495886 | 4_1:+16885508 | None:intergenic |
| GGATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4_1:-16885538 | Msa0537860:CDS |
| ATTCATACAACGACACAGTA+AGG | 0.510083 | 4_1:+16884744 | None:intergenic |
| CTGACGGTCAGGCGTGGTGG+TGG | 0.517462 | 4_1:+16885468 | None:intergenic |
| ATGTTAACACCACATTTGCC+AGG | 0.525937 | 4_1:+16885373 | None:intergenic |
| CCACCACAGCATGCTGGAGA+TGG | 0.543598 | 4_1:+16885514 | None:intergenic |
| TCTTCTCTTCCTGGCAAATG+TGG | 0.544086 | 4_1:-16885382 | Msa0537860:CDS |
| TATCCAACAAGTCTGGTAAG+AGG | 0.547013 | 4_1:+16884773 | None:intergenic |
| CCATCTCCAGCATGCTGTGG+TGG | 0.550747 | 4_1:-16885514 | Msa0537860:CDS |
| GTGCATGATTGTTGCACCAA+TGG | 0.554877 | 4_1:-16885614 | Msa0537860:CDS |
| GGTCCATCTCCAGCATGCTG+TGG | 0.560551 | 4_1:-16885517 | Msa0537860:CDS |
| GAGATTGCAGCCTCTGCCAT+TGG | 0.562691 | 4_1:+16885598 | None:intergenic |
| AGCAGCCTGACGGTCAGGCG+TGG | 0.565783 | 4_1:+16885462 | None:intergenic |
| AGCCTGACGGTCAGGCGTGG+TGG | 0.576862 | 4_1:+16885465 | None:intergenic |
| TGGTCATATTTACAGCATCA+GGG | 0.592414 | 4_1:-16884908 | Msa0537860:intron |
| CCTCTAAGATATCCAATGCA+TGG | 0.598915 | 4_1:+16885547 | None:intergenic |
| GATTGTTGCACCAATGGCAG+AGG | 0.608779 | 4_1:-16885608 | Msa0537860:CDS |
| ATACAACGACACAGTAAGGA+AGG | 0.621503 | 4_1:+16884748 | None:intergenic |
| TGCATTGGATATCTTAGAGG+TGG | 0.623803 | 4_1:-16885544 | Msa0537860:CDS |
| AGCAGTTGCAAGCAGCCTGA+CGG | 0.624471 | 4_1:+16885452 | None:intergenic |
| GCAGAGGCTGCAATCTCATG+TGG | 0.630304 | 4_1:-16885592 | Msa0537860:CDS |
| ATCTCATGTGGACAAGTGAG+TGG | 0.724614 | 4_1:-16885580 | Msa0537860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTGTTCCATTTT+AGG | + | chr4_1:16885142-16885161 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTGTTCCATTTT+AGG | + | chr4_1:16885142-16885161 | None:intergenic | 15.0% |
| !!! | TGCTGATTTTTTTTTTTTGT+TGG | - | chr4_1:16885437-16885456 | Msa0537860:CDS | 20.0% |
| !! | ACTTAAAATTTCCATAACTT+TGG | + | chr4_1:16885504-16885523 | None:intergenic | 20.0% |
| !! | ATTAAGAATAAAAATGAGAG+TGG | - | chr4_1:16885542-16885561 | Msa0537860:CDS | 20.0% |
| !!! | ACGTAGTGAAATATTTTAAT+CGG | - | chr4_1:16885651-16885670 | Msa0537860:CDS | 20.0% |
| !!! | TGCTGATTTTTTTTTTTTGT+TGG | - | chr4_1:16885437-16885456 | Msa0537860:CDS | 20.0% |
| !! | ACTTAAAATTTCCATAACTT+TGG | + | chr4_1:16885504-16885523 | None:intergenic | 20.0% |
| !! | ATTAAGAATAAAAATGAGAG+TGG | - | chr4_1:16885542-16885561 | Msa0537860:CDS | 20.0% |
| !!! | ACGTAGTGAAATATTTTAAT+CGG | - | chr4_1:16885651-16885670 | Msa0537860:CDS | 20.0% |
| ! | TTAAATTAGTCCACCTAAAA+TGG | - | chr4_1:16885126-16885145 | Msa0537860:intron | 25.0% |
| !!! | TTTTTTTGTTCCATTTTAGG+TGG | + | chr4_1:16885139-16885158 | None:intergenic | 25.0% |
| !!! | CGTAGTGAAATATTTTAATC+GGG | - | chr4_1:16885652-16885671 | Msa0537860:CDS | 25.0% |
| ! | TTAAATTAGTCCACCTAAAA+TGG | - | chr4_1:16885126-16885145 | Msa0537860:intron | 25.0% |
| !!! | TTTTTTTGTTCCATTTTAGG+TGG | + | chr4_1:16885139-16885158 | None:intergenic | 25.0% |
| AAGAATAAAAATGAGAGTGG+TGG | - | chr4_1:16885545-16885564 | Msa0537860:CDS | 30.0% | |
| AAGAATAAAAATGAGAGTGG+TGG | - | chr4_1:16885545-16885564 | Msa0537860:CDS | 30.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | - | chr4_1:16884953-16884972 | Msa0537860:intron | 35.0% |
| TTGGTCATATTTACAGCATC+AGG | - | chr4_1:16885456-16885475 | Msa0537860:CDS | 35.0% | |
| TGGTCATATTTACAGCATCA+GGG | - | chr4_1:16885457-16885476 | Msa0537860:CDS | 35.0% | |
| ATATTGCAGCTCCAAAGTTA+TGG | - | chr4_1:16885490-16885509 | Msa0537860:CDS | 35.0% | |
| AATAAAAATGAGAGTGGTGG+AGG | - | chr4_1:16885548-16885567 | Msa0537860:CDS | 35.0% | |
| ATTCATACAACGACACAGTA+AGG | + | chr4_1:16885624-16885643 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | - | chr4_1:16884953-16884972 | Msa0537860:intron | 35.0% |
| TTGGTCATATTTACAGCATC+AGG | - | chr4_1:16885456-16885475 | Msa0537860:CDS | 35.0% | |
| TGGTCATATTTACAGCATCA+GGG | - | chr4_1:16885457-16885476 | Msa0537860:CDS | 35.0% | |
| ATATTGCAGCTCCAAAGTTA+TGG | - | chr4_1:16885490-16885509 | Msa0537860:CDS | 35.0% | |
| AATAAAAATGAGAGTGGTGG+AGG | - | chr4_1:16885548-16885567 | Msa0537860:CDS | 35.0% | |
| ATTCATACAACGACACAGTA+AGG | + | chr4_1:16885624-16885643 | None:intergenic | 35.0% | |
| !! | CCTCTAAGATATCCAATGCA+TGG | + | chr4_1:16884821-16884840 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | - | chr4_1:16884818-16884837 | Msa0537860:three_prime_UTR | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | - | chr4_1:16884821-16884840 | Msa0537860:three_prime_UTR | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | chr4_1:16884995-16885014 | None:intergenic | 40.0% | |
| ATGAACATACGTAGCACAGT+TGG | + | chr4_1:16885041-16885060 | None:intergenic | 40.0% | |
| TATCCTCTTACCAGACTTGT+TGG | - | chr4_1:16885589-16885608 | Msa0537860:CDS | 40.0% | |
| TATCCAACAAGTCTGGTAAG+AGG | + | chr4_1:16885595-16885614 | None:intergenic | 40.0% | |
| ATACAACGACACAGTAAGGA+AGG | + | chr4_1:16885620-16885639 | None:intergenic | 40.0% | |
| !! | CCTCTAAGATATCCAATGCA+TGG | + | chr4_1:16884821-16884840 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | - | chr4_1:16884818-16884837 | Msa0537860:three_prime_UTR | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | - | chr4_1:16884821-16884840 | Msa0537860:three_prime_UTR | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | chr4_1:16884995-16885014 | None:intergenic | 40.0% | |
| ATGAACATACGTAGCACAGT+TGG | + | chr4_1:16885041-16885060 | None:intergenic | 40.0% | |
| TATCCTCTTACCAGACTTGT+TGG | - | chr4_1:16885589-16885608 | Msa0537860:CDS | 40.0% | |
| TATCCAACAAGTCTGGTAAG+AGG | + | chr4_1:16885595-16885614 | None:intergenic | 40.0% | |
| ATACAACGACACAGTAAGGA+AGG | + | chr4_1:16885620-16885639 | None:intergenic | 40.0% | |
| GTGCATGATTGTTGCACCAA+TGG | - | chr4_1:16884751-16884770 | Msa0537860:three_prime_UTR | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | - | chr4_1:16884785-16884804 | Msa0537860:three_prime_UTR | 45.0% | |
| TCTTCTCTTCCTGGCAAATG+TGG | - | chr4_1:16884983-16885002 | Msa0537860:intron | 45.0% | |
| !! | GTGGAGGTACTGATCTTGTA+TGG | + | chr4_1:16885019-16885038 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | + | chr4_1:16885038-16885057 | None:intergenic | 45.0% | |
| GAAGGACTATCCAACAAGTC+TGG | + | chr4_1:16885602-16885621 | None:intergenic | 45.0% | |
| GTGCATGATTGTTGCACCAA+TGG | - | chr4_1:16884751-16884770 | Msa0537860:three_prime_UTR | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | - | chr4_1:16884785-16884804 | Msa0537860:three_prime_UTR | 45.0% | |
| TCTTCTCTTCCTGGCAAATG+TGG | - | chr4_1:16884983-16885002 | Msa0537860:intron | 45.0% | |
| !! | GTGGAGGTACTGATCTTGTA+TGG | + | chr4_1:16885019-16885038 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | + | chr4_1:16885038-16885057 | None:intergenic | 45.0% | |
| GAAGGACTATCCAACAAGTC+TGG | + | chr4_1:16885602-16885621 | None:intergenic | 45.0% | |
| !!! | AATTTCATTATTTTAATTTT+TGG | - | chr4_1:16885236-16885255 | Msa0537860:intron | 5.0% |
| !!! | AATTTCATTATTTTAATTTT+TGG | - | chr4_1:16885236-16885255 | Msa0537860:intron | 5.0% |
| GATTGTTGCACCAATGGCAG+AGG | - | chr4_1:16884757-16884776 | Msa0537860:three_prime_UTR | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | - | chr4_1:16884806-16884825 | Msa0537860:three_prime_UTR | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | - | chr4_1:16884827-16884846 | Msa0537860:three_prime_UTR | 50.0% | |
| !! | AGTGCTGCTCGTGCTATTTC+TGG | - | chr4_1:16884941-16884960 | Msa0537860:intron | 50.0% |
| !! | ATACGTAGCACAGTTGGTGG+AGG | + | chr4_1:16885035-16885054 | None:intergenic | 50.0% |
| GATTGTTGCACCAATGGCAG+AGG | - | chr4_1:16884757-16884776 | Msa0537860:three_prime_UTR | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | - | chr4_1:16884806-16884825 | Msa0537860:three_prime_UTR | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | - | chr4_1:16884827-16884846 | Msa0537860:three_prime_UTR | 50.0% | |
| !! | AGTGCTGCTCGTGCTATTTC+TGG | - | chr4_1:16884941-16884960 | Msa0537860:intron | 50.0% |
| !! | ATACGTAGCACAGTTGGTGG+AGG | + | chr4_1:16885035-16885054 | None:intergenic | 50.0% |
| GAGATTGCAGCCTCTGCCAT+TGG | + | chr4_1:16884770-16884789 | None:intergenic | 55.0% | |
| GCAGAGGCTGCAATCTCATG+TGG | - | chr4_1:16884773-16884792 | Msa0537860:three_prime_UTR | 55.0% | |
| TTCACTCCACCACAGCATGC+TGG | + | chr4_1:16884860-16884879 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | + | chr4_1:16884916-16884935 | None:intergenic | 55.0% | |
| ! | GGTGGAGGCTCGTGCTATTA+TGG | - | chr4_1:16885563-16885582 | Msa0537860:CDS | 55.0% |
| GAGATTGCAGCCTCTGCCAT+TGG | + | chr4_1:16884770-16884789 | None:intergenic | 55.0% | |
| GCAGAGGCTGCAATCTCATG+TGG | - | chr4_1:16884773-16884792 | Msa0537860:three_prime_UTR | 55.0% | |
| TTCACTCCACCACAGCATGC+TGG | + | chr4_1:16884860-16884879 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | + | chr4_1:16884916-16884935 | None:intergenic | 55.0% | |
| ! | GGTGGAGGCTCGTGCTATTA+TGG | - | chr4_1:16885563-16885582 | Msa0537860:CDS | 55.0% |
| GGTCCATCTCCAGCATGCTG+TGG | - | chr4_1:16884848-16884867 | Msa0537860:exon | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | + | chr4_1:16884854-16884873 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | - | chr4_1:16884851-16884870 | Msa0537860:exon | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | + | chr4_1:16884911-16884930 | None:intergenic | 60.0% | |
| GGCGCAGCTTCTTCTCTTCC+TGG | - | chr4_1:16884974-16884993 | Msa0537860:intron | 60.0% | |
| GGTCCATCTCCAGCATGCTG+TGG | - | chr4_1:16884848-16884867 | Msa0537860:exon | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | + | chr4_1:16884854-16884873 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | - | chr4_1:16884851-16884870 | Msa0537860:exon | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | + | chr4_1:16884911-16884930 | None:intergenic | 60.0% | |
| GGCGCAGCTTCTTCTCTTCC+TGG | - | chr4_1:16884974-16884993 | Msa0537860:intron | 60.0% | |
| !! | ACGGTCAGGCGTGGTGGTGG+CGG | + | chr4_1:16884897-16884916 | None:intergenic | 70.0% |
| CTGACGGTCAGGCGTGGTGG+TGG | + | chr4_1:16884900-16884919 | None:intergenic | 70.0% | |
| CACCACCACGCCTGACCGTC+AGG | - | chr4_1:16884898-16884917 | Msa0537860:intron | 70.0% | |
| AGCCTGACGGTCAGGCGTGG+TGG | + | chr4_1:16884903-16884922 | None:intergenic | 70.0% | |
| AGCAGCCTGACGGTCAGGCG+TGG | + | chr4_1:16884906-16884925 | None:intergenic | 70.0% | |
| !! | ACGGTCAGGCGTGGTGGTGG+CGG | + | chr4_1:16884897-16884916 | None:intergenic | 70.0% |
| CTGACGGTCAGGCGTGGTGG+TGG | + | chr4_1:16884900-16884919 | None:intergenic | 70.0% | |
| CACCACCACGCCTGACCGTC+AGG | - | chr4_1:16884898-16884917 | Msa0537860:intron | 70.0% | |
| AGCCTGACGGTCAGGCGTGG+TGG | + | chr4_1:16884903-16884922 | None:intergenic | 70.0% | |
| AGCAGCCTGACGGTCAGGCG+TGG | + | chr4_1:16884906-16884925 | None:intergenic | 70.0% | |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | + | chr4_1:16884894-16884913 | None:intergenic | 75.0% |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | + | chr4_1:16884894-16884913 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16884713 | 16885674 | 16884713 | ID=Msa0537860;Name=Msa0537860 |
| chr4_1 | mRNA | 16884713 | 16885674 | 16884713 | ID=Msa0537860-mRNA-1;Parent=Msa0537860;Name=Msa0537860-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.5|1|1|1|2|153|121 |
| chr4_1 | exon | 16884713 | 16884915 | 16884713 | ID=Msa0537860-mRNA-1:exon:4993;Parent=Msa0537860-mRNA-1 |
| chr4_1 | exon | 16885359 | 16885674 | 16885359 | ID=Msa0537860-mRNA-1:exon:4992;Parent=Msa0537860-mRNA-1 |
| chr4_1 | CDS | 16885359 | 16885674 | 16885359 | ID=Msa0537860-mRNA-1:cds;Parent=Msa0537860-mRNA-1 |
| chr4_1 | CDS | 16884866 | 16884915 | 16884866 | ID=Msa0537860-mRNA-1:cds;Parent=Msa0537860-mRNA-1 |
| chr4_1 | three_prime_UTR | 16884713 | 16884865 | 16884713 | ID=Msa0537860-mRNA-1:three_prime_utr;Parent=Msa0537860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
