Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347030 | XP_039688822.1 | 86.916 | 107 | 14 | 0 | 1 | 107 | 1 | 107 | 1.29e-58 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347030 | sp|A0AT31|NLTP5_LENCU | 70.536 | 112 | 33 | 0 | 3 | 114 | 4 | 115 | 4.28e-51 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347030 | G7JI87 | 86.916 | 107 | 14 | 0 | 1 | 107 | 1 | 107 | 6.16e-59 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa1347030 | 0.804471 | 2.126228e-49 | -8.615850e-47 |
| Msa0057260 | Msa1347030 | 0.819658 | 1.034840e-52 | -8.615850e-47 |
| Msa1347030 | Msa1369860 | 0.826224 | 3.050273e-54 | -8.615850e-47 |
| Msa1347030 | Msa1445040 | -0.808068 | 3.713779e-50 | -8.615850e-47 |
| Msa0617120 | Msa1347030 | 0.847261 | 1.293441e-59 | -8.615850e-47 |
| Msa0633860 | Msa1347030 | 0.931336 | 4.389954e-94 | -8.615850e-47 |
| Msa0634270 | Msa1347030 | 0.815457 | 9.156839e-52 | -8.615850e-47 |
| Msa0634420 | Msa1347030 | 0.935649 | 6.082396e-97 | -8.615850e-47 |
| Msa0638710 | Msa1347030 | 0.814377 | 1.589274e-51 | -8.615850e-47 |
| Msa0660820 | Msa1347030 | 0.807153 | 5.807972e-50 | -8.615850e-47 |
| Msa0838660 | Msa1347030 | 0.815601 | 8.505365e-52 | -8.615850e-47 |
| Msa1229640 | Msa1347030 | 0.849399 | 3.314674e-60 | -8.615850e-47 |
| Msa1258810 | Msa1347030 | 0.810760 | 9.819992e-51 | -8.615850e-47 |
| Msa1263590 | Msa1347030 | 0.817450 | 3.276940e-52 | -8.615850e-47 |
| Msa1263670 | Msa1347030 | 0.818383 | 2.017087e-52 | -8.615850e-47 |
| Msa1272340 | Msa1347030 | 0.854552 | 1.141142e-61 | -8.615850e-47 |
| Msa1284030 | Msa1347030 | 0.800416 | 1.456132e-48 | -8.615850e-47 |
| Msa1302780 | Msa1347030 | 0.802476 | 5.509065e-49 | -8.615850e-47 |
| Msa1310250 | Msa1347030 | 0.854815 | 9.575282e-62 | -8.615850e-47 |
| Msa1330240 | Msa1347030 | 0.829572 | 4.774920e-55 | -8.615850e-47 |
| Msa1334650 | Msa1347030 | 0.800809 | 1.210592e-48 | -8.615850e-47 |
| Msa1208510 | Msa1347030 | 0.827050 | 1.938110e-54 | -8.615850e-47 |
| Msa1220740 | Msa1347030 | 0.807062 | 6.071490e-50 | -8.615850e-47 |
| Msa0537860 | Msa1347030 | 0.817162 | 3.803603e-52 | -8.615850e-47 |
| Msa0537870 | Msa1347030 | 0.921084 | 5.626945e-88 | -8.615850e-47 |
| Msa0537880 | Msa1347030 | 0.928834 | 1.645728e-92 | -8.615850e-47 |
| Msa0538260 | Msa1347030 | 0.885407 | 8.347637e-72 | -8.615850e-47 |
| Msa0538270 | Msa1347030 | 0.921679 | 2.625978e-88 | -8.615850e-47 |
| Msa0538570 | Msa1347030 | 0.806096 | 9.708411e-50 | -8.615850e-47 |
| Msa0594180 | Msa1347030 | 0.814538 | 1.464384e-51 | -8.615850e-47 |
| Msa0931480 | Msa1347030 | 0.810421 | 1.162574e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347030 | MtrunA17_Chr4g0012961 | 86.916 | 107 | 14 | 0 | 1 | 107 | 1 | 107 | 1.19e-62 | 186 |
| Msa1347030 | MtrunA17_Chr4g0012991 | 86.916 | 107 | 14 | 0 | 1 | 107 | 56 | 162 | 4.29e-62 | 187 |
| Msa1347030 | MtrunA17_Chr4g0013001 | 85.981 | 107 | 15 | 0 | 1 | 107 | 1 | 107 | 6.86e-62 | 184 |
| Msa1347030 | MtrunA17_Chr4g0012951 | 81.308 | 107 | 20 | 0 | 1 | 107 | 1 | 107 | 4.38e-59 | 177 |
| Msa1347030 | MtrunA17_Chr4g0013261 | 59.483 | 116 | 44 | 2 | 1 | 114 | 1 | 115 | 2.78e-42 | 135 |
| Msa1347030 | MtrunA17_Chr4g0013251 | 59.483 | 116 | 44 | 2 | 1 | 114 | 1 | 115 | 2.83e-41 | 132 |
| Msa1347030 | MtrunA17_Chr4g0013211 | 47.273 | 110 | 58 | 0 | 1 | 110 | 1 | 110 | 1.15e-30 | 105 |
| Msa1347030 | MtrunA17_Chr7g0244691 | 46.018 | 113 | 58 | 2 | 4 | 114 | 7 | 118 | 9.48e-30 | 103 |
| Msa1347030 | MtrunA17_Chr4g0012901 | 47.664 | 107 | 54 | 2 | 1 | 105 | 5 | 111 | 4.48e-28 | 99.4 |
| Msa1347030 | MtrunA17_Chr7g0244831 | 45.283 | 106 | 54 | 3 | 12 | 114 | 14 | 118 | 3.75e-26 | 94.4 |
| Msa1347030 | MtrunA17_Chr7g0244841 | 45.714 | 105 | 53 | 3 | 4 | 106 | 7 | 109 | 5.52e-26 | 94.0 |
| Msa1347030 | MtrunA17_Chr7g0244641 | 39.450 | 109 | 64 | 2 | 4 | 110 | 7 | 115 | 6.22e-25 | 91.3 |
| Msa1347030 | MtrunA17_Chr7g0244671 | 39.048 | 105 | 62 | 1 | 4 | 106 | 7 | 111 | 8.10e-24 | 89.4 |
| Msa1347030 | MtrunA17_Chr4g0012931 | 40.708 | 113 | 64 | 1 | 1 | 110 | 1 | 113 | 1.29e-23 | 88.6 |
| Msa1347030 | MtrunA17_Chr4g0012891 | 39.316 | 117 | 64 | 3 | 5 | 114 | 9 | 125 | 8.27e-23 | 86.3 |
| Msa1347030 | MtrunA17_Chr2g0309241 | 42.056 | 107 | 60 | 2 | 1 | 106 | 1 | 106 | 4.82e-22 | 84.0 |
| Msa1347030 | MtrunA17_Chr7g0244811 | 39.806 | 103 | 60 | 1 | 1 | 101 | 5 | 107 | 8.91e-22 | 83.2 |
| Msa1347030 | MtrunA17_Chr7g0244741 | 40.351 | 114 | 65 | 1 | 4 | 114 | 7 | 120 | 6.76e-20 | 78.6 |
| Msa1347030 | MtrunA17_Chr4g0012921 | 40.708 | 113 | 64 | 2 | 1 | 110 | 1 | 113 | 1.55e-19 | 77.4 |
| Msa1347030 | MtrunA17_Chr7g0244681 | 41.284 | 109 | 61 | 2 | 4 | 110 | 7 | 114 | 2.78e-19 | 77.0 |
| Msa1347030 | MtrunA17_Chr3g0107481 | 37.255 | 102 | 63 | 1 | 5 | 105 | 3 | 104 | 6.11e-17 | 70.9 |
| Msa1347030 | MtrunA17_Chr7g0244721 | 37.143 | 105 | 64 | 1 | 4 | 106 | 7 | 111 | 9.48e-17 | 70.5 |
| Msa1347030 | MtrunA17_Chr7g0233431 | 31.429 | 105 | 71 | 1 | 5 | 108 | 20 | 124 | 1.63e-16 | 70.1 |
| Msa1347030 | MtrunA17_Chr1g0165761 | 41.667 | 108 | 60 | 2 | 5 | 110 | 8 | 114 | 6.97e-16 | 68.2 |
| Msa1347030 | MtrunA17_Chr7g0244821 | 39.048 | 105 | 60 | 4 | 4 | 106 | 7 | 109 | 1.25e-15 | 67.8 |
| Msa1347030 | MtrunA17_Chr7g0244761 | 37.615 | 109 | 65 | 3 | 4 | 110 | 32 | 139 | 1.35e-15 | 68.2 |
| Msa1347030 | MtrunA17_Chr7g0244791 | 37.383 | 107 | 60 | 2 | 4 | 106 | 12 | 115 | 4.69e-15 | 66.2 |
| Msa1347030 | MtrunA17_Chr7g0244661 | 38.938 | 113 | 61 | 3 | 4 | 114 | 7 | 113 | 1.03e-14 | 65.1 |
| Msa1347030 | MtrunA17_Chr3g0105001 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 2.57e-13 | 61.6 |
| Msa1347030 | MtrunA17_Chr7g0244751 | 33.036 | 112 | 74 | 1 | 4 | 114 | 7 | 118 | 5.33e-13 | 60.8 |
| Msa1347030 | MtrunA17_Chr3g0104971 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 5.70e-13 | 60.8 |
| Msa1347030 | MtrunA17_Chr3g0104981 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 5.82e-13 | 60.8 |
| Msa1347030 | MtrunA17_Chr3g0105021 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 6.69e-13 | 60.5 |
| Msa1347030 | MtrunA17_Chr3g0105011 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 6.69e-13 | 60.5 |
| Msa1347030 | MtrunA17_Chr3g0095931 | 31.683 | 101 | 63 | 3 | 10 | 105 | 13 | 112 | 1.38e-12 | 59.7 |
| Msa1347030 | MtrunA17_Chr3g0104991 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 1.39e-12 | 59.7 |
| Msa1347030 | MtrunA17_Chr3g0104951 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 1.46e-12 | 59.7 |
| Msa1347030 | MtrunA17_Chr3g0104931 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 1.46e-12 | 59.7 |
| Msa1347030 | MtrunA17_Chr3g0104941 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 1.46e-12 | 59.7 |
| Msa1347030 | MtrunA17_Chr3g0104921 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 1.96e-12 | 59.3 |
| Msa1347030 | MtrunA17_Chr3g0104911 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 1.96e-12 | 59.3 |
| Msa1347030 | MtrunA17_Chr3g0104901 | 34.513 | 113 | 63 | 5 | 1 | 103 | 1 | 112 | 3.10e-12 | 58.9 |
| Msa1347030 | MtrunA17_Chr3g0105031 | 36.190 | 105 | 59 | 4 | 9 | 106 | 2 | 105 | 3.10e-12 | 58.5 |
| Msa1347030 | MtrunA17_Chr3g0105041 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 4.80e-12 | 58.5 |
| Msa1347030 | MtrunA17_Chr7g0244731 | 48.529 | 68 | 32 | 2 | 25 | 90 | 57 | 123 | 5.80e-12 | 58.9 |
| Msa1347030 | MtrunA17_Chr3g0104961 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 8.74e-12 | 57.8 |
| Msa1347030 | MtrunA17_Chr3g0095991 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 1.18e-11 | 57.4 |
| Msa1347030 | MtrunA17_Chr3g0101431 | 35.714 | 98 | 57 | 3 | 9 | 101 | 11 | 107 | 2.86e-11 | 56.2 |
| Msa1347030 | MtrunA17_Chr3g0095951 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 3.02e-11 | 56.2 |
| Msa1347030 | MtrunA17_Chr3g0096021 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 3.51e-11 | 56.2 |
| Msa1347030 | MtrunA17_Chr3g0096031 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 5.67e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347030 | AT5G59320.1 | 52.294 | 109 | 50 | 1 | 6 | 114 | 8 | 114 | 3.25e-33 | 112 |
| Msa1347030 | AT2G38540.1 | 57.391 | 115 | 43 | 6 | 4 | 114 | 5 | 117 | 9.50e-32 | 108 |
| Msa1347030 | AT5G59310.1 | 53.922 | 102 | 42 | 2 | 6 | 107 | 8 | 104 | 9.55e-30 | 103 |
| Msa1347030 | AT2G38530.1 | 54.386 | 114 | 48 | 4 | 4 | 114 | 5 | 117 | 1.39e-28 | 100 |
| Msa1347030 | AT3G51600.1 | 48.246 | 114 | 55 | 4 | 4 | 114 | 5 | 117 | 3.67e-25 | 92.0 |
| Msa1347030 | AT2G15050.3 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.03e-24 | 91.3 |
| Msa1347030 | AT2G15050.2 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.15e-24 | 90.9 |
| Msa1347030 | AT2G15050.1 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.55e-24 | 90.9 |
| Msa1347030 | AT3G51590.1 | 40.541 | 111 | 63 | 3 | 6 | 115 | 8 | 116 | 1.46e-23 | 88.2 |
| Msa1347030 | AT4G33355.2 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 2.03e-23 | 87.8 |
| Msa1347030 | AT4G33355.1 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 2.07e-23 | 87.8 |
| Msa1347030 | AT5G01870.1 | 43.269 | 104 | 51 | 4 | 9 | 105 | 4 | 106 | 8.96e-21 | 80.9 |
| Msa1347030 | AT3G08770.1 | 41.667 | 96 | 52 | 3 | 22 | 114 | 18 | 112 | 4.03e-17 | 71.6 |
| Msa1347030 | AT3G08770.2 | 41.414 | 99 | 54 | 3 | 22 | 117 | 18 | 115 | 5.52e-17 | 71.2 |
| Msa1347030 | AT2G18370.1 | 40.449 | 89 | 51 | 2 | 15 | 102 | 16 | 103 | 7.61e-16 | 68.6 |
Find 43 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | tig0009437:-7029 | Msa1347030:CDS |
| ATTATTCTTAATATCGTTAA+AGG | 0.191944 | tig0009437:+6471 | Msa1347030:intergenic |
| CCATGCATTGGATATCTTAG+AGG | 0.354250 | tig0009437:-7152 | Msa1347030:CDS |
| GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | tig0009437:-7017 | Msa1347030:CDS |
| TTGCAAGCAGCCTGGCGGTC+AGG | 0.369068 | tig0009437:+7062 | Msa1347030:intergenic |
| TTGAGCAGTTACCATAATCT+TGG | 0.379849 | tig0009437:+6510 | Msa1347030:intergenic |
| ATGATGTGGCTCCAAGATTA+TGG | 0.390436 | tig0009437:-6521 | Msa1347030:CDS |
| TTATTCTTAATATCGTTAAA+GGG | 0.415188 | tig0009437:+6472 | Msa1347030:intergenic |
| GTCAGGCGTGGTGGTGGCGG+CGG | 0.430334 | tig0009437:+7079 | Msa1347030:intergenic |
| GCGGTCAGGCGTGGTGGTGG+CGG | 0.445777 | tig0009437:+7076 | Msa1347030:intergenic |
| CTGGCGGTCAGGCGTGGTGG+TGG | 0.447269 | tig0009437:+7073 | Msa1347030:intergenic |
| CACCACCACGCCTGACCGCC+AGG | 0.460254 | tig0009437:-7072 | Msa1347030:CDS |
| GTGCATGATTGTTGCACCTA+TGG | 0.467928 | tig0009437:-7219 | Msa1347030:CDS |
| GGTGCTCTTTCTCCATGCAT+TGG | 0.474474 | tig0009437:-7164 | Msa1347030:CDS |
| AGCAGCCTGGCGGTCAGGCG+TGG | 0.477818 | tig0009437:+7067 | Msa1347030:intergenic |
| AACTGCTTGAAAAGTGCTGC+TGG | 0.486030 | tig0009437:-7041 | Msa1347030:CDS |
| TCAAGCAGTTGCAAGCAGCC+TGG | 0.486116 | tig0009437:+7054 | Msa1347030:intergenic |
| TCTTCTCTCCCTGGCAAATG+TGG | 0.490642 | tig0009437:-6987 | Msa1347030:CDS |
| TTCACTCCACCACAGCATGC+TGG | 0.495886 | tig0009437:+7113 | Msa1347030:intergenic |
| CAAGTCTTGTACAAGAGGAT+AGG | 0.502752 | tig0009437:+6414 | Msa1347030:intergenic |
| GGATATCTTAGAGGTGGTGC+TGG | 0.504129 | tig0009437:-7143 | Msa1347030:CDS |
| GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | tig0009437:+6954 | Msa1347030:intergenic |
| ATGTTAACACCACATTTGCC+AGG | 0.518576 | tig0009437:+6978 | Msa1347030:intergenic |
| AAGTCTTGTACAAGAGGATA+GGG | 0.528815 | tig0009437:+6415 | Msa1347030:intergenic |
| AAGAATAATAATGAGAGTGA+TGG | 0.537116 | tig0009437:-6457 | Msa1347030:three_prime_UTR |
| GGCGCAGCTTCTTCTCTCCC+TGG | 0.542091 | tig0009437:-6996 | Msa1347030:CDS |
| CCACCACAGCATGCTGGAGA+TGG | 0.543598 | tig0009437:+7119 | Msa1347030:intergenic |
| TGATACAAGTCTTGTACAAG+AGG | 0.547117 | tig0009437:+6409 | Msa1347030:intergenic |
| CCATCTCCAGCATGCTGTGG+TGG | 0.550747 | tig0009437:-7119 | Msa1347030:CDS |
| AAACAATATGGCAAACATGA+AGG | 0.557284 | tig0009437:-7264 | None:intergenic |
| GGTCCATCTCCAGCATGCTG+TGG | 0.560551 | tig0009437:-7122 | Msa1347030:CDS |
| AGCCTGGCGGTCAGGCGTGG+TGG | 0.562191 | tig0009437:+7070 | Msa1347030:intergenic |
| TTGTTATACTTACAGCATCA+GGG | 0.577540 | tig0009437:-6554 | Msa1347030:intron |
| GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | tig0009437:+7203 | Msa1347030:intergenic |
| ATGGAGACTCATCTTATATG+TGG | 0.597131 | tig0009437:-6438 | Msa1347030:three_prime_UTR |
| CCTCTAAGATATCCAATGCA+TGG | 0.598915 | tig0009437:+7152 | Msa1347030:intergenic |
| TGCATTGGATATCTTAGAGG+TGG | 0.623803 | tig0009437:-7149 | Msa1347030:CDS |
| TGTTAACACCACATTTGCCA+GGG | 0.642773 | tig0009437:+6979 | Msa1347030:intergenic |
| ATAAGAGTAATGAGATAACA+AGG | 0.648698 | tig0009437:+6352 | Msa1347030:intergenic |
| AGCAGTTGCAAGCAGCCTGG+CGG | 0.651296 | tig0009437:+7057 | Msa1347030:intergenic |
| GCAGATGCTGCAATCTCATG+TGG | 0.654132 | tig0009437:-7197 | Msa1347030:CDS |
| AGGGCATGAAGATGATGATG+TGG | 0.683193 | tig0009437:-6535 | Msa1347030:CDS |
| ATCTCATGTGGACAAGTGAG+TGG | 0.724614 | tig0009437:-7185 | Msa1347030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTATTAAAAAAATA+TGG | + | tig0009437:6942-6961 | Msa1347030:intergenic | 0.0% |
| !!! | AAAATTTTATTAAAAAAATA+TGG | + | tig0009437:6942-6961 | Msa1347030:intergenic | 0.0% |
| !!! | TAAATCATTCTTTTAATTTT+AGG | - | tig0009437:6832-6851 | Msa1347030:intron | 10.0% |
| !!! | TTTATATTATTCAATGTTTT+TGG | - | tig0009437:6960-6979 | Msa1347030:intron | 10.0% |
| !!! | TTATATTATTCAATGTTTTT+GGG | - | tig0009437:6961-6980 | Msa1347030:intron | 10.0% |
| !!! | TAAATCATTCTTTTAATTTT+AGG | - | tig0009437:6832-6851 | Msa1347030:intron | 10.0% |
| !!! | TTTATATTATTCAATGTTTT+TGG | - | tig0009437:6960-6979 | Msa1347030:intron | 10.0% |
| !!! | TTATATTATTCAATGTTTTT+GGG | - | tig0009437:6961-6980 | Msa1347030:intron | 10.0% |
| !!! | AAAATTTAGTTGTTTAACTT+TGG | + | tig0009437:6789-6808 | Msa1347030:intergenic | 15.0% |
| !!! | TATAAATTCTTTTTTGCTTA+AGG | - | tig0009437:6905-6924 | Msa1347030:intron | 15.0% |
| !! | TTATTCTTAATATCGTTAAA+GGG | + | tig0009437:7155-7174 | Msa1347030:intergenic | 15.0% |
| !! | ATTATTCTTAATATCGTTAA+AGG | + | tig0009437:7156-7175 | Msa1347030:intergenic | 15.0% |
| !!! | AAAATTTAGTTGTTTAACTT+TGG | + | tig0009437:6789-6808 | Msa1347030:intergenic | 15.0% |
| !!! | TATAAATTCTTTTTTGCTTA+AGG | - | tig0009437:6905-6924 | Msa1347030:intron | 15.0% |
| !! | TTATTCTTAATATCGTTAAA+GGG | + | tig0009437:7155-7174 | Msa1347030:intergenic | 15.0% |
| !! | ATTATTCTTAATATCGTTAA+AGG | + | tig0009437:7156-7175 | Msa1347030:intergenic | 15.0% |
| !!! | TTTTATCCTCATTTTTCAAG+TGG | - | tig0009437:6735-6754 | Msa1347030:intron | 25.0% |
| !!! | CTACGAATCTACTTTTTTAT+TGG | - | tig0009437:7005-7024 | Msa1347030:CDS | 25.0% |
| !! | TAGAAAATTAATCACTGACT+AGG | - | tig0009437:7037-7056 | Msa1347030:CDS | 25.0% |
| ! | AAGAATAATAATGAGAGTGA+TGG | - | tig0009437:7167-7186 | Msa1347030:CDS | 25.0% |
| !!! | TTTTATCCTCATTTTTCAAG+TGG | - | tig0009437:6735-6754 | Msa1347030:intron | 25.0% |
| !!! | CTACGAATCTACTTTTTTAT+TGG | - | tig0009437:7005-7024 | Msa1347030:CDS | 25.0% |
| !! | TAGAAAATTAATCACTGACT+AGG | - | tig0009437:7037-7056 | Msa1347030:CDS | 25.0% |
| ! | AAGAATAATAATGAGAGTGA+TGG | - | tig0009437:7167-7186 | Msa1347030:CDS | 25.0% |
| ! | TTTACCATTTGAGATTGTTG+AGG | - | tig0009437:6808-6827 | Msa1347030:intron | 30.0% |
| ! | TTACCATTTGAGATTGTTGA+GGG | - | tig0009437:6809-6828 | Msa1347030:intron | 30.0% |
| ! | TTTGTTATACTTACAGCATC+AGG | - | tig0009437:7069-7088 | Msa1347030:CDS | 30.0% |
| TTGTTATACTTACAGCATCA+GGG | - | tig0009437:7070-7089 | Msa1347030:CDS | 30.0% | |
| ! | TTTACCATTTGAGATTGTTG+AGG | - | tig0009437:6808-6827 | Msa1347030:intron | 30.0% |
| ! | TTACCATTTGAGATTGTTGA+GGG | - | tig0009437:6809-6828 | Msa1347030:intron | 30.0% |
| ! | TTTGTTATACTTACAGCATC+AGG | - | tig0009437:7069-7088 | Msa1347030:CDS | 30.0% |
| TTGTTATACTTACAGCATCA+GGG | - | tig0009437:7070-7089 | Msa1347030:CDS | 30.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | - | tig0009437:6607-6626 | Msa1347030:intron | 35.0% |
| ATAAACATACGTAGCACAGT+TGG | + | tig0009437:6695-6714 | Msa1347030:intergenic | 35.0% | |
| ACTAGACCACTTGAAAAATG+AGG | + | tig0009437:6744-6763 | Msa1347030:intergenic | 35.0% | |
| TTACCCTCAACAATCTCAAA+TGG | + | tig0009437:6815-6834 | Msa1347030:intergenic | 35.0% | |
| TTGAGCAGTTACCATAATCT+TGG | + | tig0009437:7117-7136 | Msa1347030:intergenic | 35.0% | |
| ATGGAGACTCATCTTATATG+TGG | - | tig0009437:7186-7205 | Msa1347030:CDS | 35.0% | |
| ! | AAGTCTTGTACAAGAGGATA+GGG | + | tig0009437:7212-7231 | Msa1347030:intergenic | 35.0% |
| ! | TGATACAAGTCTTGTACAAG+AGG | + | tig0009437:7218-7237 | Msa1347030:intergenic | 35.0% |
| !! | GCTATTTCTGGTTTGAATAC+AGG | - | tig0009437:6607-6626 | Msa1347030:intron | 35.0% |
| ATAAACATACGTAGCACAGT+TGG | + | tig0009437:6695-6714 | Msa1347030:intergenic | 35.0% | |
| ACTAGACCACTTGAAAAATG+AGG | + | tig0009437:6744-6763 | Msa1347030:intergenic | 35.0% | |
| TTACCCTCAACAATCTCAAA+TGG | + | tig0009437:6815-6834 | Msa1347030:intergenic | 35.0% | |
| TTGAGCAGTTACCATAATCT+TGG | + | tig0009437:7117-7136 | Msa1347030:intergenic | 35.0% | |
| ATGGAGACTCATCTTATATG+TGG | - | tig0009437:7186-7205 | Msa1347030:CDS | 35.0% | |
| ! | AAGTCTTGTACAAGAGGATA+GGG | + | tig0009437:7212-7231 | Msa1347030:intergenic | 35.0% |
| ! | TGATACAAGTCTTGTACAAG+AGG | + | tig0009437:7218-7237 | Msa1347030:intergenic | 35.0% |
| !! | CCTCTAAGATATCCAATGCA+TGG | + | tig0009437:6475-6494 | Msa1347030:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | - | tig0009437:6472-6491 | Msa1347030:three_prime_UTR | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | - | tig0009437:6475-6494 | Msa1347030:three_prime_UTR | 40.0% | |
| TGTTAACACCACATTTGCCA+GGG | + | tig0009437:6648-6667 | Msa1347030:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | tig0009437:6649-6668 | Msa1347030:intergenic | 40.0% | |
| ATGATGTGGCTCCAAGATTA+TGG | - | tig0009437:7103-7122 | Msa1347030:CDS | 40.0% | |
| ! | CAAGTCTTGTACAAGAGGAT+AGG | + | tig0009437:7213-7232 | Msa1347030:intergenic | 40.0% |
| !! | CCTCTAAGATATCCAATGCA+TGG | + | tig0009437:6475-6494 | Msa1347030:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | - | tig0009437:6472-6491 | Msa1347030:three_prime_UTR | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | - | tig0009437:6475-6494 | Msa1347030:three_prime_UTR | 40.0% | |
| TGTTAACACCACATTTGCCA+GGG | + | tig0009437:6648-6667 | Msa1347030:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | tig0009437:6649-6668 | Msa1347030:intergenic | 40.0% | |
| ATGATGTGGCTCCAAGATTA+TGG | - | tig0009437:7103-7122 | Msa1347030:CDS | 40.0% | |
| ! | CAAGTCTTGTACAAGAGGAT+AGG | + | tig0009437:7213-7232 | Msa1347030:intergenic | 40.0% |
| GTGCATGATTGTTGCACCTA+TGG | - | tig0009437:6405-6424 | Msa1347030:three_prime_UTR | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | - | tig0009437:6439-6458 | Msa1347030:three_prime_UTR | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | - | tig0009437:6583-6602 | Msa1347030:intron | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | + | tig0009437:6673-6692 | Msa1347030:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | + | tig0009437:6692-6711 | Msa1347030:intergenic | 45.0% | |
| ! | AGGGCATGAAGATGATGATG+TGG | - | tig0009437:7089-7108 | Msa1347030:CDS | 45.0% |
| GTGCATGATTGTTGCACCTA+TGG | - | tig0009437:6405-6424 | Msa1347030:three_prime_UTR | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | - | tig0009437:6439-6458 | Msa1347030:three_prime_UTR | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | - | tig0009437:6583-6602 | Msa1347030:intron | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | + | tig0009437:6673-6692 | Msa1347030:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | + | tig0009437:6692-6711 | Msa1347030:intergenic | 45.0% | |
| ! | AGGGCATGAAGATGATGATG+TGG | - | tig0009437:7089-7108 | Msa1347030:CDS | 45.0% |
| GAGATTGCAGCATCTGCCAT+AGG | + | tig0009437:6424-6443 | Msa1347030:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | - | tig0009437:6427-6446 | Msa1347030:three_prime_UTR | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | - | tig0009437:6460-6479 | Msa1347030:three_prime_UTR | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | - | tig0009437:6481-6500 | Msa1347030:three_prime_UTR | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | - | tig0009437:6595-6614 | Msa1347030:intron | 50.0% |
| TCTTCTCTCCCTGGCAAATG+TGG | - | tig0009437:6637-6656 | Msa1347030:intron | 50.0% | |
| !! | ATACGTAGCACAGTTGGTGG+AGG | + | tig0009437:6689-6708 | Msa1347030:intergenic | 50.0% |
| GAGATTGCAGCATCTGCCAT+AGG | + | tig0009437:6424-6443 | Msa1347030:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | - | tig0009437:6427-6446 | Msa1347030:three_prime_UTR | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | - | tig0009437:6460-6479 | Msa1347030:three_prime_UTR | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | - | tig0009437:6481-6500 | Msa1347030:three_prime_UTR | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | - | tig0009437:6595-6614 | Msa1347030:intron | 50.0% |
| TCTTCTCTCCCTGGCAAATG+TGG | - | tig0009437:6637-6656 | Msa1347030:intron | 50.0% | |
| !! | ATACGTAGCACAGTTGGTGG+AGG | + | tig0009437:6689-6708 | Msa1347030:intergenic | 50.0% |
| TTCACTCCACCACAGCATGC+TGG | + | tig0009437:6514-6533 | Msa1347030:intergenic | 55.0% | |
| TCAAGCAGTTGCAAGCAGCC+TGG | + | tig0009437:6573-6592 | Msa1347030:intergenic | 55.0% | |
| TTCACTCCACCACAGCATGC+TGG | + | tig0009437:6514-6533 | Msa1347030:intergenic | 55.0% | |
| TCAAGCAGTTGCAAGCAGCC+TGG | + | tig0009437:6573-6592 | Msa1347030:intergenic | 55.0% | |
| GGTCCATCTCCAGCATGCTG+TGG | - | tig0009437:6502-6521 | Msa1347030:exon | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | + | tig0009437:6508-6527 | Msa1347030:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | - | tig0009437:6505-6524 | Msa1347030:exon | 60.0% | |
| AGCAGTTGCAAGCAGCCTGG+CGG | + | tig0009437:6570-6589 | Msa1347030:intergenic | 60.0% | |
| GGTCCATCTCCAGCATGCTG+TGG | - | tig0009437:6502-6521 | Msa1347030:exon | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | + | tig0009437:6508-6527 | Msa1347030:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | - | tig0009437:6505-6524 | Msa1347030:exon | 60.0% | |
| AGCAGTTGCAAGCAGCCTGG+CGG | + | tig0009437:6570-6589 | Msa1347030:intergenic | 60.0% | |
| TTGCAAGCAGCCTGGCGGTC+AGG | + | tig0009437:6565-6584 | Msa1347030:intergenic | 65.0% | |
| GGCGCAGCTTCTTCTCTCCC+TGG | - | tig0009437:6628-6647 | Msa1347030:intron | 65.0% | |
| TTGCAAGCAGCCTGGCGGTC+AGG | + | tig0009437:6565-6584 | Msa1347030:intergenic | 65.0% | |
| GGCGCAGCTTCTTCTCTCCC+TGG | - | tig0009437:6628-6647 | Msa1347030:intron | 65.0% | |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | + | tig0009437:6548-6567 | Msa1347030:intergenic | 75.0% |
| !! | GCGGTCAGGCGTGGTGGTGG+CGG | + | tig0009437:6551-6570 | Msa1347030:intergenic | 75.0% |
| CTGGCGGTCAGGCGTGGTGG+TGG | + | tig0009437:6554-6573 | Msa1347030:intergenic | 75.0% | |
| CACCACCACGCCTGACCGCC+AGG | - | tig0009437:6552-6571 | Msa1347030:intron | 75.0% | |
| AGCCTGGCGGTCAGGCGTGG+TGG | + | tig0009437:6557-6576 | Msa1347030:intergenic | 75.0% | |
| AGCAGCCTGGCGGTCAGGCG+TGG | + | tig0009437:6560-6579 | Msa1347030:intergenic | 75.0% | |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | + | tig0009437:6548-6567 | Msa1347030:intergenic | 75.0% |
| !! | GCGGTCAGGCGTGGTGGTGG+CGG | + | tig0009437:6551-6570 | Msa1347030:intergenic | 75.0% |
| CTGGCGGTCAGGCGTGGTGG+TGG | + | tig0009437:6554-6573 | Msa1347030:intergenic | 75.0% | |
| CACCACCACGCCTGACCGCC+AGG | - | tig0009437:6552-6571 | Msa1347030:intron | 75.0% | |
| AGCCTGGCGGTCAGGCGTGG+TGG | + | tig0009437:6557-6576 | Msa1347030:intergenic | 75.0% | |
| AGCAGCCTGGCGGTCAGGCG+TGG | + | tig0009437:6560-6579 | Msa1347030:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009437 | gene | 6367 | 7279 | 6367 | ID=Msa1347030;Name=Msa1347030 |
| tig0009437 | mRNA | 6367 | 7279 | 6367 | ID=Msa1347030-mRNA-1;Parent=Msa1347030;Name=Msa1347030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.5|1|1|1|2|151|119 |
| tig0009437 | exon | 6367 | 6561 | 6367 | ID=Msa1347030-mRNA-1:exon:5769;Parent=Msa1347030-mRNA-1 |
| tig0009437 | exon | 6964 | 7279 | 6964 | ID=Msa1347030-mRNA-1:exon:5768;Parent=Msa1347030-mRNA-1 |
| tig0009437 | CDS | 6964 | 7279 | 6964 | ID=Msa1347030-mRNA-1:cds;Parent=Msa1347030-mRNA-1 |
| tig0009437 | CDS | 6518 | 6561 | 6518 | ID=Msa1347030-mRNA-1:cds;Parent=Msa1347030-mRNA-1 |
| tig0009437 | three_prime_UTR | 6367 | 6517 | 6367 | ID=Msa1347030-mRNA-1:three_prime_utr;Parent=Msa1347030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
