Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538270 | RHN59411.1 | 86.916 | 107 | 14 | 0 | 1 | 107 | 56 | 162 | 4.63e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538270 | sp|A0AT31|NLTP5_LENCU | 75.000 | 104 | 26 | 0 | 4 | 107 | 5 | 108 | 8.64e-51 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538270 | A0A396I3M7 | 86.916 | 107 | 14 | 0 | 1 | 107 | 56 | 162 | 2.21e-58 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0538270 | 0.801685 | 8.012379e-49 | -8.615850e-47 |
| Msa0008330 | Msa0538270 | 0.864608 | 1.075849e-64 | -8.615850e-47 |
| Msa0008350 | Msa0538270 | 0.811114 | 8.230987e-51 | -8.615850e-47 |
| Msa0008850 | Msa0538270 | 0.811936 | 5.456777e-51 | -8.615850e-47 |
| Msa0017120 | Msa0538270 | 0.820634 | 6.185130e-53 | -8.615850e-47 |
| Msa0038310 | Msa0538270 | 0.813093 | 3.047151e-51 | -8.615850e-47 |
| Msa0042220 | Msa0538270 | 0.801400 | 9.167971e-49 | -8.615850e-47 |
| Msa0057260 | Msa0538270 | 0.857926 | 1.170153e-62 | -8.615850e-47 |
| Msa0060600 | Msa0538270 | 0.816786 | 4.621340e-52 | -8.615850e-47 |
| Msa0065390 | Msa0538270 | 0.813894 | 2.031717e-51 | -8.615850e-47 |
| Msa0074230 | Msa0538270 | 0.809210 | 2.118156e-50 | -8.615850e-47 |
| Msa0086090 | Msa0538270 | 0.830188 | 3.380072e-55 | -8.615850e-47 |
| Msa0094420 | Msa0538270 | 0.807985 | 3.868565e-50 | -8.615850e-47 |
| Msa0110710 | Msa0538270 | 0.817328 | 3.490572e-52 | -8.615850e-47 |
| Msa0122180 | Msa0538270 | 0.812650 | 3.810005e-51 | -8.615850e-47 |
| Msa0132620 | Msa0538270 | 0.825194 | 5.353333e-54 | -8.615850e-47 |
| Msa0141670 | Msa0538270 | 0.824551 | 7.594116e-54 | -8.615850e-47 |
| Msa0147550 | Msa0538270 | 0.803491 | 3.398369e-49 | -8.615850e-47 |
| Msa0157020 | Msa0538270 | 0.818038 | 2.414857e-52 | -8.615850e-47 |
| Msa0168390 | Msa0538270 | 0.804906 | 1.724765e-49 | -8.615850e-47 |
| Msa0207180 | Msa0538270 | 0.813701 | 2.240773e-51 | -8.615850e-47 |
| Msa0230400 | Msa0538270 | 0.838011 | 3.705148e-57 | -8.615850e-47 |
| Msa0378340 | Msa0538270 | 0.815007 | 1.152621e-51 | -8.615850e-47 |
| Msa0421800 | Msa0538270 | 0.807682 | 4.485456e-50 | -8.615850e-47 |
| Msa0427690 | Msa0538270 | 0.814235 | 1.708180e-51 | -8.615850e-47 |
| Msa0274780 | Msa0538270 | 0.844495 | 7.295612e-59 | -8.615850e-47 |
| Msa0284870 | Msa0538270 | 0.813349 | 2.677919e-51 | -8.615850e-47 |
| Msa0315480 | Msa0538270 | 0.828758 | 7.525054e-55 | -8.615850e-47 |
| Msa0323630 | Msa0538270 | 0.806980 | 6.318303e-50 | -8.615850e-47 |
| Msa0487620 | Msa0538270 | 0.804994 | 1.653317e-49 | -8.615850e-47 |
| Msa0514260 | Msa0538270 | 0.802514 | 5.411983e-49 | -8.615850e-47 |
| Msa0518520 | Msa0538270 | 0.813966 | 1.958856e-51 | -8.615850e-47 |
| Msa0534420 | Msa0538270 | 0.811192 | 7.915966e-51 | -8.615850e-47 |
| Msa0537860 | Msa0538270 | 0.834249 | 3.343546e-56 | -8.615850e-47 |
| Msa0537870 | Msa0538270 | 0.924714 | 4.870718e-90 | -8.615850e-47 |
| Msa0537880 | Msa0538270 | 0.913344 | 6.857765e-84 | -8.615850e-47 |
| Msa0538260 | Msa0538270 | 0.927758 | 7.512811e-92 | -8.615850e-47 |
| Msa0538270 | Msa0538570 | 0.845311 | 4.396421e-59 | -8.615850e-47 |
| Msa0538270 | Msa0540340 | 0.833589 | 4.888740e-56 | -8.615850e-47 |
| Msa0538270 | Msa0547050 | 0.807227 | 5.604041e-50 | -8.615850e-47 |
| Msa0538270 | Msa0558890 | 0.802974 | 4.349132e-49 | -8.615850e-47 |
| Msa0538270 | Msa0561510 | 0.804330 | 2.275173e-49 | -8.615850e-47 |
| Msa0538270 | Msa0577870 | 0.806071 | 9.828654e-50 | -8.615850e-47 |
| Msa0538270 | Msa0581340 | 0.806888 | 6.610292e-50 | -8.615850e-47 |
| Msa0538270 | Msa0582090 | 0.804606 | 1.992727e-49 | -8.615850e-47 |
| Msa0538270 | Msa0594180 | 0.862268 | 5.713512e-64 | -8.615850e-47 |
| Msa0538270 | Msa0594390 | 0.834128 | 3.585901e-56 | -8.615850e-47 |
| Msa0538270 | Msa0596080 | 0.815860 | 7.443608e-52 | -8.615850e-47 |
| Msa0538270 | Msa0607280 | 0.801117 | 1.047284e-48 | -8.615850e-47 |
| Msa0538270 | Msa0610280 | 0.802110 | 6.555167e-49 | -8.615850e-47 |
| Msa0538270 | Msa0614230 | 0.819661 | 1.032794e-52 | -8.615850e-47 |
| Msa0538270 | Msa0630970 | 0.821717 | 3.480499e-53 | -8.615850e-47 |
| Msa0538270 | Msa0633860 | 0.905420 | 4.373322e-80 | -8.615850e-47 |
| Msa0538270 | Msa0634270 | 0.854475 | 1.201086e-61 | -8.615850e-47 |
| Msa0538270 | Msa0634420 | 0.961587 | 7.089738e-120 | -8.615850e-47 |
| Msa0538270 | Msa0638710 | 0.813541 | 2.429825e-51 | -8.615850e-47 |
| Msa0538270 | Msa0653710 | 0.805122 | 1.554639e-49 | -8.615850e-47 |
| Msa0538270 | Msa0654060 | 0.814706 | 1.344180e-51 | -8.615850e-47 |
| Msa0538270 | Msa0660820 | 0.823519 | 1.325986e-53 | -8.615850e-47 |
| Msa0538270 | Msa0665910 | -0.802991 | 4.313044e-49 | -8.615850e-47 |
| Msa0538270 | Msa0674200 | 0.800683 | 1.284795e-48 | -8.615850e-47 |
| Msa0538270 | Msa0674320 | 0.807565 | 4.749587e-50 | -8.615850e-47 |
| Msa0538270 | Msa0703460 | 0.818762 | 1.654593e-52 | -8.615850e-47 |
| Msa0538270 | Msa0719340 | 0.807777 | 4.283461e-50 | -8.615850e-47 |
| Msa0538270 | Msa0720270 | 0.802913 | 4.476084e-49 | -8.615850e-47 |
| Msa0538270 | Msa0723150 | 0.800209 | 1.604343e-48 | -8.615850e-47 |
| Msa0538270 | Msa0738850 | 0.815140 | 1.076502e-51 | -8.615850e-47 |
| Msa0538270 | Msa0738860 | 0.837840 | 4.099593e-57 | -8.615850e-47 |
| Msa0538270 | Msa0738870 | 0.857635 | 1.427407e-62 | -8.615850e-47 |
| Msa0538270 | Msa0740420 | 0.801117 | 1.047367e-48 | -8.615850e-47 |
| Msa0538270 | Msa0772150 | 0.812705 | 3.705371e-51 | -8.615850e-47 |
| Msa0538270 | Msa0782330 | 0.801512 | 8.696178e-49 | -8.615850e-47 |
| Msa0538270 | Msa0783270 | 0.834569 | 2.778098e-56 | -8.615850e-47 |
| Msa0538270 | Msa0803130 | 0.805258 | 1.456284e-49 | -8.615850e-47 |
| Msa0538270 | Msa0819330 | 0.841220 | 5.421920e-58 | -8.615850e-47 |
| Msa0538270 | Msa0819360 | 0.834870 | 2.333408e-56 | -8.615850e-47 |
| Msa0538270 | Msa0820670 | 0.804024 | 2.634190e-49 | -8.615850e-47 |
| Msa0538270 | Msa0838660 | 0.825162 | 5.447052e-54 | -8.615850e-47 |
| Msa0538270 | Msa0841490 | 0.807632 | 4.597247e-50 | -8.615850e-47 |
| Msa0538270 | Msa0859520 | 0.850904 | 1.255976e-60 | -8.615850e-47 |
| Msa0538270 | Msa0859530 | 0.840729 | 7.297380e-58 | -8.615850e-47 |
| Msa0538270 | Msa0877420 | 0.817173 | 3.783834e-52 | -8.615850e-47 |
| Msa0538270 | Msa0922340 | 0.810934 | 9.003130e-51 | -8.615850e-47 |
| Msa0538270 | Msa0931480 | 0.847420 | 1.169848e-59 | -8.615850e-47 |
| Msa0538270 | Msa0955300 | 0.804091 | 2.551514e-49 | -8.615850e-47 |
| Msa0538270 | Msa0955310 | 0.843375 | 1.456249e-58 | -8.615850e-47 |
| Msa0538270 | Msa0978000 | 0.814871 | 1.235653e-51 | -8.615850e-47 |
| Msa0538270 | Msa0987350 | 0.801139 | 1.036739e-48 | -8.615850e-47 |
| Msa0538270 | Msa1004500 | 0.804385 | 2.215315e-49 | -8.615850e-47 |
| Msa0538270 | Msa1014270 | 0.803229 | 3.851991e-49 | -8.615850e-47 |
| Msa0538270 | Msa1044040 | 0.814171 | 1.764616e-51 | -8.615850e-47 |
| Msa0538270 | Msa1115580 | 0.807466 | 4.985309e-50 | -8.615850e-47 |
| Msa0538270 | Msa1116140 | 0.836915 | 7.072886e-57 | -8.615850e-47 |
| Msa0538270 | Msa1116150 | 0.804438 | 2.160271e-49 | -8.615850e-47 |
| Msa0538270 | Msa1134400 | 0.806680 | 7.312332e-50 | -8.615850e-47 |
| Msa0538270 | Msa1162560 | 0.817109 | 3.911101e-52 | -8.615850e-47 |
| Msa0538270 | Msa1190820 | 0.812480 | 4.151367e-51 | -8.615850e-47 |
| Msa0538270 | Msa1198450 | 0.826792 | 2.233285e-54 | -8.615850e-47 |
| Msa0538270 | Msa1200920 | 0.823504 | 1.336651e-53 | -8.615850e-47 |
| Msa0538270 | Msa1208510 | 0.819855 | 9.325323e-53 | -8.615850e-47 |
| Msa0538270 | Msa1214400 | 0.804165 | 2.462875e-49 | -8.615850e-47 |
| Msa0538270 | Msa1220740 | 0.820384 | 7.058551e-53 | -8.615850e-47 |
| Msa0538270 | Msa1221260 | 0.807854 | 4.123592e-50 | -8.615850e-47 |
| Msa0538270 | Msa1229640 | 0.821959 | 3.059246e-53 | -8.615850e-47 |
| Msa0538270 | Msa1258810 | 0.841054 | 5.994331e-58 | -8.615850e-47 |
| Msa0538270 | Msa1264140 | 0.805513 | 1.287572e-49 | -8.615850e-47 |
| Msa0538270 | Msa1284030 | 0.829055 | 6.376588e-55 | -8.615850e-47 |
| Msa0538270 | Msa1302150 | 0.822261 | 2.603400e-53 | -8.615850e-47 |
| Msa0538270 | Msa1302780 | 0.819639 | 1.044968e-52 | -8.615850e-47 |
| Msa0538270 | Msa1305740 | 0.804010 | 2.652093e-49 | -8.615850e-47 |
| Msa0538270 | Msa1305750 | 0.800632 | 1.315852e-48 | -8.615850e-47 |
| Msa0538270 | Msa1323060 | 0.828659 | 7.949735e-55 | -8.615850e-47 |
| Msa0538270 | Msa1327820 | 0.815142 | 1.075537e-51 | -8.615850e-47 |
| Msa0538270 | Msa1330240 | 0.840242 | 9.783670e-58 | -8.615850e-47 |
| Msa0538270 | Msa1334650 | 0.811389 | 7.173595e-51 | -8.615850e-47 |
| Msa0538270 | Msa1342930 | 0.804646 | 1.954503e-49 | -8.615850e-47 |
| Msa0538270 | Msa1347030 | 0.921679 | 2.625978e-88 | -8.615850e-47 |
| Msa0538270 | Msa1369860 | 0.821636 | 3.634117e-53 | -8.615850e-47 |
| Msa0538270 | Msa1382720 | 0.811017 | 8.640802e-51 | -8.615850e-47 |
| Msa0538270 | Msa1450020 | 0.800152 | 1.648049e-48 | -8.615850e-47 |
| Msa0538270 | Msa1456790 | 0.803987 | 2.680974e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538270 | MtrunA17_Chr4g0012991 | 86.916 | 107 | 14 | 0 | 1 | 107 | 56 | 162 | 4.26e-62 | 187 |
| Msa0538270 | MtrunA17_Chr4g0013001 | 85.981 | 107 | 15 | 0 | 1 | 107 | 1 | 107 | 1.03e-61 | 184 |
| Msa0538270 | MtrunA17_Chr4g0012961 | 85.981 | 107 | 15 | 0 | 1 | 107 | 1 | 107 | 1.03e-61 | 184 |
| Msa0538270 | MtrunA17_Chr4g0012951 | 81.308 | 107 | 20 | 0 | 1 | 107 | 1 | 107 | 5.85e-59 | 177 |
| Msa0538270 | MtrunA17_Chr4g0013261 | 63.303 | 109 | 37 | 2 | 1 | 107 | 1 | 108 | 7.88e-42 | 134 |
| Msa0538270 | MtrunA17_Chr4g0013251 | 63.303 | 109 | 37 | 2 | 1 | 107 | 1 | 108 | 9.87e-41 | 131 |
| Msa0538270 | MtrunA17_Chr4g0013211 | 46.364 | 110 | 59 | 0 | 1 | 110 | 1 | 110 | 4.75e-30 | 104 |
| Msa0538270 | MtrunA17_Chr7g0244691 | 46.789 | 109 | 55 | 2 | 4 | 110 | 7 | 114 | 7.27e-30 | 103 |
| Msa0538270 | MtrunA17_Chr4g0012901 | 47.664 | 107 | 54 | 2 | 1 | 105 | 5 | 111 | 2.29e-28 | 100 |
| Msa0538270 | MtrunA17_Chr7g0244841 | 44.037 | 109 | 57 | 3 | 4 | 110 | 7 | 113 | 1.79e-26 | 95.5 |
| Msa0538270 | MtrunA17_Chr7g0244831 | 46.078 | 102 | 51 | 3 | 12 | 110 | 14 | 114 | 2.26e-26 | 95.1 |
| Msa0538270 | MtrunA17_Chr7g0244641 | 39.450 | 109 | 64 | 2 | 4 | 110 | 7 | 115 | 4.47e-25 | 91.7 |
| Msa0538270 | MtrunA17_Chr7g0244671 | 37.615 | 109 | 66 | 1 | 4 | 110 | 7 | 115 | 4.44e-24 | 90.1 |
| Msa0538270 | MtrunA17_Chr4g0012931 | 39.823 | 113 | 65 | 1 | 1 | 110 | 1 | 113 | 9.96e-23 | 86.3 |
| Msa0538270 | MtrunA17_Chr4g0012891 | 39.823 | 113 | 61 | 3 | 5 | 110 | 9 | 121 | 1.43e-22 | 85.5 |
| Msa0538270 | MtrunA17_Chr7g0244811 | 39.806 | 103 | 60 | 1 | 1 | 101 | 5 | 107 | 4.77e-22 | 84.0 |
| Msa0538270 | MtrunA17_Chr2g0309241 | 42.056 | 107 | 60 | 2 | 1 | 106 | 1 | 106 | 1.09e-21 | 83.2 |
| Msa0538270 | MtrunA17_Chr7g0244741 | 40.909 | 110 | 62 | 1 | 4 | 110 | 7 | 116 | 2.85e-20 | 79.7 |
| Msa0538270 | MtrunA17_Chr7g0244681 | 41.284 | 109 | 61 | 2 | 4 | 110 | 7 | 114 | 1.64e-19 | 77.4 |
| Msa0538270 | MtrunA17_Chr4g0012921 | 39.823 | 113 | 65 | 2 | 1 | 110 | 1 | 113 | 1.25e-18 | 75.1 |
| Msa0538270 | MtrunA17_Chr7g0233431 | 31.532 | 111 | 75 | 1 | 3 | 112 | 18 | 128 | 1.19e-17 | 73.2 |
| Msa0538270 | MtrunA17_Chr7g0244721 | 35.780 | 109 | 68 | 1 | 4 | 110 | 7 | 115 | 2.77e-17 | 72.0 |
| Msa0538270 | MtrunA17_Chr3g0107481 | 37.255 | 102 | 63 | 1 | 5 | 105 | 3 | 104 | 5.67e-17 | 70.9 |
| Msa0538270 | MtrunA17_Chr1g0165761 | 41.667 | 108 | 60 | 2 | 5 | 110 | 8 | 114 | 2.53e-16 | 69.3 |
| Msa0538270 | MtrunA17_Chr7g0244821 | 37.615 | 109 | 64 | 4 | 4 | 110 | 7 | 113 | 3.56e-16 | 69.3 |
| Msa0538270 | MtrunA17_Chr7g0244761 | 37.615 | 109 | 65 | 3 | 4 | 110 | 32 | 139 | 4.37e-16 | 69.3 |
| Msa0538270 | MtrunA17_Chr7g0244791 | 36.036 | 111 | 64 | 2 | 4 | 110 | 12 | 119 | 2.05e-15 | 67.0 |
| Msa0538270 | MtrunA17_Chr7g0244661 | 38.739 | 111 | 60 | 3 | 4 | 112 | 7 | 111 | 1.58e-14 | 64.7 |
| Msa0538270 | MtrunA17_Chr3g0105001 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 3.04e-13 | 61.6 |
| Msa0538270 | MtrunA17_Chr7g0244751 | 33.333 | 108 | 71 | 1 | 4 | 110 | 7 | 114 | 3.53e-13 | 61.2 |
| Msa0538270 | MtrunA17_Chr3g0104971 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 6.32e-13 | 60.8 |
| Msa0538270 | MtrunA17_Chr3g0104981 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 6.38e-13 | 60.8 |
| Msa0538270 | MtrunA17_Chr3g0105021 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 7.34e-13 | 60.5 |
| Msa0538270 | MtrunA17_Chr3g0105011 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 7.34e-13 | 60.5 |
| Msa0538270 | MtrunA17_Chr3g0104901 | 34.211 | 114 | 64 | 5 | 1 | 104 | 1 | 113 | 1.23e-12 | 60.1 |
| Msa0538270 | MtrunA17_Chr3g0104991 | 36.893 | 103 | 57 | 4 | 9 | 104 | 12 | 113 | 1.59e-12 | 59.7 |
| Msa0538270 | MtrunA17_Chr3g0095931 | 31.683 | 101 | 63 | 3 | 10 | 105 | 13 | 112 | 1.60e-12 | 59.7 |
| Msa0538270 | MtrunA17_Chr3g0104951 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.62e-12 | 59.7 |
| Msa0538270 | MtrunA17_Chr3g0104931 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.62e-12 | 59.7 |
| Msa0538270 | MtrunA17_Chr3g0104941 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.62e-12 | 59.7 |
| Msa0538270 | MtrunA17_Chr3g0104921 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 2.64e-12 | 58.9 |
| Msa0538270 | MtrunA17_Chr3g0104911 | 35.922 | 103 | 58 | 4 | 9 | 104 | 2 | 103 | 2.64e-12 | 58.9 |
| Msa0538270 | MtrunA17_Chr3g0105031 | 36.190 | 105 | 59 | 4 | 9 | 106 | 2 | 105 | 3.83e-12 | 58.5 |
| Msa0538270 | MtrunA17_Chr7g0244731 | 48.529 | 68 | 32 | 2 | 25 | 90 | 57 | 123 | 5.15e-12 | 59.3 |
| Msa0538270 | MtrunA17_Chr3g0105041 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 6.05e-12 | 58.2 |
| Msa0538270 | MtrunA17_Chr3g0104961 | 34.259 | 108 | 63 | 4 | 4 | 104 | 7 | 113 | 1.10e-11 | 57.4 |
| Msa0538270 | MtrunA17_Chr3g0095991 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 1.36e-11 | 57.4 |
| Msa0538270 | MtrunA17_Chr3g0101431 | 35.714 | 98 | 57 | 3 | 9 | 101 | 11 | 107 | 2.58e-11 | 56.6 |
| Msa0538270 | MtrunA17_Chr3g0095951 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 3.84e-11 | 56.2 |
| Msa0538270 | MtrunA17_Chr3g0096021 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 4.75e-11 | 55.8 |
| Msa0538270 | MtrunA17_Chr3g0096031 | 31.776 | 107 | 65 | 4 | 4 | 103 | 7 | 112 | 7.05e-11 | 55.5 |
| Msa0538270 | MtrunA17_Chr7g0244651 | 30.973 | 113 | 74 | 2 | 4 | 112 | 7 | 119 | 9.90e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538270 | AT5G59320.1 | 57.576 | 99 | 40 | 1 | 8 | 106 | 10 | 106 | 7.78e-33 | 111 |
| Msa0538270 | AT2G38540.1 | 60.185 | 108 | 37 | 6 | 4 | 107 | 5 | 110 | 1.14e-31 | 108 |
| Msa0538270 | AT5G59310.1 | 55.000 | 100 | 40 | 2 | 8 | 107 | 10 | 104 | 1.16e-29 | 103 |
| Msa0538270 | AT2G38530.1 | 57.009 | 107 | 42 | 4 | 4 | 107 | 5 | 110 | 3.82e-28 | 99.8 |
| Msa0538270 | AT3G51600.1 | 50.467 | 107 | 49 | 4 | 4 | 107 | 5 | 110 | 5.01e-25 | 92.0 |
| Msa0538270 | AT2G15050.3 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.05e-24 | 91.3 |
| Msa0538270 | AT2G15050.2 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.19e-24 | 90.9 |
| Msa0538270 | AT2G15050.1 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 1.53e-24 | 90.9 |
| Msa0538270 | AT4G33355.2 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 1.93e-23 | 87.8 |
| Msa0538270 | AT4G33355.1 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 2.06e-23 | 87.8 |
| Msa0538270 | AT3G51590.1 | 41.667 | 108 | 60 | 3 | 6 | 112 | 8 | 113 | 1.09e-22 | 85.9 |
| Msa0538270 | AT5G01870.1 | 40.777 | 103 | 55 | 2 | 9 | 105 | 4 | 106 | 1.46e-20 | 80.5 |
| Msa0538270 | AT3G08770.1 | 42.553 | 94 | 50 | 3 | 22 | 112 | 18 | 110 | 1.11e-16 | 70.5 |
| Msa0538270 | AT3G08770.2 | 42.553 | 94 | 50 | 3 | 22 | 112 | 18 | 110 | 1.34e-16 | 70.5 |
| Msa0538270 | AT2G18370.1 | 40.449 | 89 | 51 | 2 | 15 | 102 | 16 | 103 | 1.13e-15 | 68.2 |
Find 37 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | 4_1:+17460864 | Msa0538270:CDS |
| GGTGGAGGCTCGTGCTATTA+TGG | 0.316778 | 4_1:+17461482 | Msa0538270:three_prime_UTR |
| TATCCAACAAGTCTGGTAAA+AGG | 0.338890 | 4_1:-17461511 | None:intergenic |
| ACTTAAAATTTCCATAACTT+TGG | 0.352472 | 4_1:-17461420 | None:intergenic |
| CCATGCATTGGATATCTTAG+AGG | 0.354250 | 4_1:+17460741 | Msa0538270:CDS |
| GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | 4_1:+17460876 | Msa0538270:CDS |
| TTGCAAGCAGCCTGGCGGTC+AGG | 0.369068 | 4_1:-17460831 | None:intergenic |
| GTCAGGCGTGGTGGTGGCGG+CGG | 0.430334 | 4_1:-17460814 | None:intergenic |
| GCGGTCAGGCGTGGTGGTGG+CGG | 0.445777 | 4_1:-17460817 | None:intergenic |
| CTGGCGGTCAGGCGTGGTGG+TGG | 0.447269 | 4_1:-17460820 | None:intergenic |
| CACCACCACGCCTGACCGCC+AGG | 0.460254 | 4_1:+17460821 | Msa0538270:CDS |
| GTGCATGATTGTTGCACCTA+TGG | 0.467928 | 4_1:+17460674 | Msa0538270:CDS |
| GGTGCTCTTTCTCCATGCAT+TGG | 0.474474 | 4_1:+17460729 | Msa0538270:CDS |
| ATATTGCAGCTCCAAAGTTA+TGG | 0.477723 | 4_1:+17461409 | Msa0538270:CDS |
| AGCAGCCTGGCGGTCAGGCG+TGG | 0.477818 | 4_1:-17460826 | None:intergenic |
| AACTGCTTGAAAAGTGCTGC+TGG | 0.486030 | 4_1:+17460852 | Msa0538270:CDS |
| TCAAGCAGTTGCAAGCAGCC+TGG | 0.486116 | 4_1:-17460839 | None:intergenic |
| TCTTCTCTCCCTGGCAAATG+TGG | 0.490642 | 4_1:+17460906 | Msa0538270:CDS |
| TTCACTCCACCACAGCATGC+TGG | 0.495886 | 4_1:-17460780 | None:intergenic |
| GGATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4_1:+17460750 | Msa0538270:CDS |
| GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | 4_1:-17460939 | None:intergenic |
| TAAGGACTATCCAACAAGTC+TGG | 0.518212 | 4_1:-17461518 | None:intergenic |
| ATGTTAACACCACATTTGCC+AGG | 0.518576 | 4_1:-17460915 | None:intergenic |
| ATTCATACAACGACACAGTA+AGG | 0.519141 | 4_1:-17461536 | None:intergenic |
| GGCGCAGCTTCTTCTCTCCC+TGG | 0.542091 | 4_1:+17460897 | Msa0538270:CDS |
| CCACCACAGCATGCTGGAGA+TGG | 0.543598 | 4_1:-17460774 | None:intergenic |
| CCATCTCCAGCATGCTGTGG+TGG | 0.550747 | 4_1:+17460774 | Msa0538270:CDS |
| GGTCCATCTCCAGCATGCTG+TGG | 0.560551 | 4_1:+17460771 | Msa0538270:CDS |
| AGCCTGGCGGTCAGGCGTGG+TGG | 0.562191 | 4_1:-17460823 | None:intergenic |
| GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4_1:-17460690 | None:intergenic |
| TGGTCATATTTACAGCATCA+GGG | 0.592414 | 4_1:+17461376 | Msa0538270:intron |
| CCTCTAAGATATCCAATGCA+TGG | 0.598915 | 4_1:-17460741 | None:intergenic |
| TGCATTGGATATCTTAGAGG+TGG | 0.623803 | 4_1:+17460744 | Msa0538270:CDS |
| TGTTAACACCACATTTGCCA+GGG | 0.642773 | 4_1:-17460914 | None:intergenic |
| AGCAGTTGCAAGCAGCCTGG+CGG | 0.651296 | 4_1:-17460836 | None:intergenic |
| GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4_1:+17460696 | Msa0538270:CDS |
| ATCTCATGTGGACAAGTGAG+TGG | 0.724614 | 4_1:+17460708 | Msa0538270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTATTTTTT+TGG | - | chr4_1:17461077-17461096 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTATTTATTTTTT+TGG | - | chr4_1:17461077-17461096 | None:intergenic | 0.0% |
| !!! | GTTGCAAATTTTTTTTTTGT+TGG | + | chr4_1:17461356-17461375 | Msa0538270:intron | 20.0% |
| !! | ACTTAAAATTTCCATAACTT+TGG | - | chr4_1:17461423-17461442 | None:intergenic | 20.0% |
| !! | ATTAAGAATAAAAATGAGAG+TGG | + | chr4_1:17461461-17461480 | Msa0538270:three_prime_UTR | 20.0% |
| !!! | ACGTAGTGAAATATTTTAAT+CGG | + | chr4_1:17461566-17461585 | Msa0538270:three_prime_UTR | 20.0% |
| !!! | GTTGCAAATTTTTTTTTTGT+TGG | + | chr4_1:17461356-17461375 | Msa0538270:intron | 20.0% |
| !! | ACTTAAAATTTCCATAACTT+TGG | - | chr4_1:17461423-17461442 | None:intergenic | 20.0% |
| !! | ATTAAGAATAAAAATGAGAG+TGG | + | chr4_1:17461461-17461480 | Msa0538270:three_prime_UTR | 20.0% |
| !!! | ACGTAGTGAAATATTTTAAT+CGG | + | chr4_1:17461566-17461585 | Msa0538270:three_prime_UTR | 20.0% |
| ! | TTAAATTAGTCCACCTAAAA+TGG | + | chr4_1:17461049-17461068 | Msa0538270:intron | 25.0% |
| !!! | TATTTTTTTGGTGCCATTTT+AGG | - | chr4_1:17461065-17461084 | None:intergenic | 25.0% |
| !!! | CGTAGTGAAATATTTTAATC+GGG | + | chr4_1:17461567-17461586 | Msa0538270:three_prime_UTR | 25.0% |
| ! | TTAAATTAGTCCACCTAAAA+TGG | + | chr4_1:17461049-17461068 | Msa0538270:intron | 25.0% |
| !!! | TATTTTTTTGGTGCCATTTT+AGG | - | chr4_1:17461065-17461084 | None:intergenic | 25.0% |
| AAGAATAAAAATGAGAGTGG+TGG | + | chr4_1:17461464-17461483 | Msa0538270:three_prime_UTR | 30.0% | |
| AAGAATAAAAATGAGAGTGG+TGG | + | chr4_1:17461464-17461483 | Msa0538270:three_prime_UTR | 30.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4_1:17460876-17460895 | Msa0538270:CDS | 35.0% |
| !!! | TTTTTTGGTGCCATTTTAGG+TGG | - | chr4_1:17461062-17461081 | None:intergenic | 35.0% |
| TTGGTCATATTTACAGCATC+AGG | + | chr4_1:17461375-17461394 | Msa0538270:intron | 35.0% | |
| TGGTCATATTTACAGCATCA+GGG | + | chr4_1:17461376-17461395 | Msa0538270:intron | 35.0% | |
| ATATTGCAGCTCCAAAGTTA+TGG | + | chr4_1:17461409-17461428 | Msa0538270:CDS | 35.0% | |
| AATAAAAATGAGAGTGGTGG+AGG | + | chr4_1:17461467-17461486 | Msa0538270:three_prime_UTR | 35.0% | |
| ! | TATCCTTTTACCAGACTTGT+TGG | + | chr4_1:17461508-17461527 | Msa0538270:three_prime_UTR | 35.0% |
| TATCCAACAAGTCTGGTAAA+AGG | - | chr4_1:17461514-17461533 | None:intergenic | 35.0% | |
| ATTCATACAACGACACAGTA+AGG | - | chr4_1:17461539-17461558 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4_1:17460876-17460895 | Msa0538270:CDS | 35.0% |
| !!! | TTTTTTGGTGCCATTTTAGG+TGG | - | chr4_1:17461062-17461081 | None:intergenic | 35.0% |
| TTGGTCATATTTACAGCATC+AGG | + | chr4_1:17461375-17461394 | Msa0538270:intron | 35.0% | |
| TGGTCATATTTACAGCATCA+GGG | + | chr4_1:17461376-17461395 | Msa0538270:intron | 35.0% | |
| ATATTGCAGCTCCAAAGTTA+TGG | + | chr4_1:17461409-17461428 | Msa0538270:CDS | 35.0% | |
| AATAAAAATGAGAGTGGTGG+AGG | + | chr4_1:17461467-17461486 | Msa0538270:three_prime_UTR | 35.0% | |
| ! | TATCCTTTTACCAGACTTGT+TGG | + | chr4_1:17461508-17461527 | Msa0538270:three_prime_UTR | 35.0% |
| TATCCAACAAGTCTGGTAAA+AGG | - | chr4_1:17461514-17461533 | None:intergenic | 35.0% | |
| ATTCATACAACGACACAGTA+AGG | - | chr4_1:17461539-17461558 | None:intergenic | 35.0% | |
| !! | CCTCTAAGATATCCAATGCA+TGG | - | chr4_1:17460744-17460763 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | + | chr4_1:17460741-17460760 | Msa0538270:CDS | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | + | chr4_1:17460744-17460763 | Msa0538270:CDS | 40.0% | |
| TGTTAACACCACATTTGCCA+GGG | - | chr4_1:17460917-17460936 | None:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | - | chr4_1:17460918-17460937 | None:intergenic | 40.0% | |
| ATGAACATACGTAGCACAGT+TGG | - | chr4_1:17460964-17460983 | None:intergenic | 40.0% | |
| TAAGGACTATCCAACAAGTC+TGG | - | chr4_1:17461521-17461540 | None:intergenic | 40.0% | |
| !! | CCTCTAAGATATCCAATGCA+TGG | - | chr4_1:17460744-17460763 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | + | chr4_1:17460741-17460760 | Msa0538270:CDS | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | + | chr4_1:17460744-17460763 | Msa0538270:CDS | 40.0% | |
| TGTTAACACCACATTTGCCA+GGG | - | chr4_1:17460917-17460936 | None:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | - | chr4_1:17460918-17460937 | None:intergenic | 40.0% | |
| ATGAACATACGTAGCACAGT+TGG | - | chr4_1:17460964-17460983 | None:intergenic | 40.0% | |
| TAAGGACTATCCAACAAGTC+TGG | - | chr4_1:17461521-17461540 | None:intergenic | 40.0% | |
| GTGCATGATTGTTGCACCTA+TGG | + | chr4_1:17460674-17460693 | Msa0538270:CDS | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | + | chr4_1:17460708-17460727 | Msa0538270:CDS | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4_1:17460852-17460871 | Msa0538270:CDS | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4_1:17460942-17460961 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | - | chr4_1:17460961-17460980 | None:intergenic | 45.0% | |
| GTGCATGATTGTTGCACCTA+TGG | + | chr4_1:17460674-17460693 | Msa0538270:CDS | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | + | chr4_1:17460708-17460727 | Msa0538270:CDS | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4_1:17460852-17460871 | Msa0538270:CDS | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4_1:17460942-17460961 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | - | chr4_1:17460961-17460980 | None:intergenic | 45.0% | |
| !!! | AATTTCATTATTTTAATTTT+TGG | + | chr4_1:17461157-17461176 | Msa0538270:intron | 5.0% |
| !!! | AATTTCATTATTTTAATTTT+TGG | + | chr4_1:17461157-17461176 | Msa0538270:intron | 5.0% |
| GAGATTGCAGCATCTGCCAT+AGG | - | chr4_1:17460693-17460712 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | + | chr4_1:17460696-17460715 | Msa0538270:CDS | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | + | chr4_1:17460729-17460748 | Msa0538270:CDS | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | + | chr4_1:17460750-17460769 | Msa0538270:CDS | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4_1:17460864-17460883 | Msa0538270:CDS | 50.0% |
| TCTTCTCTCCCTGGCAAATG+TGG | + | chr4_1:17460906-17460925 | Msa0538270:CDS | 50.0% | |
| !! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4_1:17460958-17460977 | None:intergenic | 50.0% |
| GAGATTGCAGCATCTGCCAT+AGG | - | chr4_1:17460693-17460712 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | + | chr4_1:17460696-17460715 | Msa0538270:CDS | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | + | chr4_1:17460729-17460748 | Msa0538270:CDS | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | + | chr4_1:17460750-17460769 | Msa0538270:CDS | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4_1:17460864-17460883 | Msa0538270:CDS | 50.0% |
| TCTTCTCTCCCTGGCAAATG+TGG | + | chr4_1:17460906-17460925 | Msa0538270:CDS | 50.0% | |
| !! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4_1:17460958-17460977 | None:intergenic | 50.0% |
| TTCACTCCACCACAGCATGC+TGG | - | chr4_1:17460783-17460802 | None:intergenic | 55.0% | |
| TCAAGCAGTTGCAAGCAGCC+TGG | - | chr4_1:17460842-17460861 | None:intergenic | 55.0% | |
| ! | GGTGGAGGCTCGTGCTATTA+TGG | + | chr4_1:17461482-17461501 | Msa0538270:three_prime_UTR | 55.0% |
| TTCACTCCACCACAGCATGC+TGG | - | chr4_1:17460783-17460802 | None:intergenic | 55.0% | |
| TCAAGCAGTTGCAAGCAGCC+TGG | - | chr4_1:17460842-17460861 | None:intergenic | 55.0% | |
| ! | GGTGGAGGCTCGTGCTATTA+TGG | + | chr4_1:17461482-17461501 | Msa0538270:three_prime_UTR | 55.0% |
| GGTCCATCTCCAGCATGCTG+TGG | + | chr4_1:17460771-17460790 | Msa0538270:CDS | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | - | chr4_1:17460777-17460796 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | + | chr4_1:17460774-17460793 | Msa0538270:CDS | 60.0% | |
| AGCAGTTGCAAGCAGCCTGG+CGG | - | chr4_1:17460839-17460858 | None:intergenic | 60.0% | |
| GGTCCATCTCCAGCATGCTG+TGG | + | chr4_1:17460771-17460790 | Msa0538270:CDS | 60.0% | |
| CCACCACAGCATGCTGGAGA+TGG | - | chr4_1:17460777-17460796 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGG+TGG | + | chr4_1:17460774-17460793 | Msa0538270:CDS | 60.0% | |
| AGCAGTTGCAAGCAGCCTGG+CGG | - | chr4_1:17460839-17460858 | None:intergenic | 60.0% | |
| TTGCAAGCAGCCTGGCGGTC+AGG | - | chr4_1:17460834-17460853 | None:intergenic | 65.0% | |
| GGCGCAGCTTCTTCTCTCCC+TGG | + | chr4_1:17460897-17460916 | Msa0538270:CDS | 65.0% | |
| TTGCAAGCAGCCTGGCGGTC+AGG | - | chr4_1:17460834-17460853 | None:intergenic | 65.0% | |
| GGCGCAGCTTCTTCTCTCCC+TGG | + | chr4_1:17460897-17460916 | Msa0538270:CDS | 65.0% | |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | - | chr4_1:17460817-17460836 | None:intergenic | 75.0% |
| !! | GCGGTCAGGCGTGGTGGTGG+CGG | - | chr4_1:17460820-17460839 | None:intergenic | 75.0% |
| CTGGCGGTCAGGCGTGGTGG+TGG | - | chr4_1:17460823-17460842 | None:intergenic | 75.0% | |
| CACCACCACGCCTGACCGCC+AGG | + | chr4_1:17460821-17460840 | Msa0538270:CDS | 75.0% | |
| AGCCTGGCGGTCAGGCGTGG+TGG | - | chr4_1:17460826-17460845 | None:intergenic | 75.0% | |
| AGCAGCCTGGCGGTCAGGCG+TGG | - | chr4_1:17460829-17460848 | None:intergenic | 75.0% | |
| !! | GTCAGGCGTGGTGGTGGCGG+CGG | - | chr4_1:17460817-17460836 | None:intergenic | 75.0% |
| !! | GCGGTCAGGCGTGGTGGTGG+CGG | - | chr4_1:17460820-17460839 | None:intergenic | 75.0% |
| CTGGCGGTCAGGCGTGGTGG+TGG | - | chr4_1:17460823-17460842 | None:intergenic | 75.0% | |
| CACCACCACGCCTGACCGCC+AGG | + | chr4_1:17460821-17460840 | Msa0538270:CDS | 75.0% | |
| AGCCTGGCGGTCAGGCGTGG+TGG | - | chr4_1:17460826-17460845 | None:intergenic | 75.0% | |
| AGCAGCCTGGCGGTCAGGCG+TGG | - | chr4_1:17460829-17460848 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17460636 | 17461589 | 17460636 | ID=Msa0538270;Name=Msa0538270 |
| chr4_1 | mRNA | 17460636 | 17461589 | 17460636 | ID=Msa0538270-mRNA-1;Parent=Msa0538270;Name=Msa0538270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.5|1|1|1|2|149|121 |
| chr4_1 | exon | 17460636 | 17460951 | 17460636 | ID=Msa0538270-mRNA-1:exon:5192;Parent=Msa0538270-mRNA-1 |
| chr4_1 | exon | 17461391 | 17461589 | 17461391 | ID=Msa0538270-mRNA-1:exon:5193;Parent=Msa0538270-mRNA-1 |
| chr4_1 | CDS | 17460636 | 17460951 | 17460636 | ID=Msa0538270-mRNA-1:cds;Parent=Msa0538270-mRNA-1 |
| chr4_1 | CDS | 17461391 | 17461440 | 17461391 | ID=Msa0538270-mRNA-1:cds;Parent=Msa0538270-mRNA-1 |
| chr4_1 | three_prime_UTR | 17461441 | 17461589 | 17461441 | ID=Msa0538270-mRNA-1:three_prime_utr;Parent=Msa0538270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
