Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537870 | RHN59411.1 | 85.981 | 107 | 15 | 0 | 1 | 107 | 56 | 162 | 3.90e-57 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537870 | sp|A0AT31|NLTP5_LENCU | 69.643 | 112 | 34 | 0 | 3 | 114 | 4 | 115 | 3.70e-50 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537870 | A0A396I3M7 | 85.981 | 107 | 15 | 0 | 1 | 107 | 56 | 162 | 1.86e-57 | 184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0537870 | 0.820659 | 6.104265e-53 | -8.615850e-47 |
| Msa0008330 | Msa0537870 | 0.815306 | 9.892940e-52 | -8.615850e-47 |
| Msa0008850 | Msa0537870 | 0.807790 | 4.255735e-50 | -8.615850e-47 |
| Msa0017120 | Msa0537870 | 0.818469 | 1.928842e-52 | -8.615850e-47 |
| Msa0042250 | Msa0537870 | 0.802113 | 6.544102e-49 | -8.615850e-47 |
| Msa0057260 | Msa0537870 | 0.868815 | 4.930798e-66 | -8.615850e-47 |
| Msa0065390 | Msa0537870 | 0.831389 | 1.715811e-55 | -8.615850e-47 |
| Msa0094420 | Msa0537870 | 0.800657 | 1.300204e-48 | -8.615850e-47 |
| Msa0100250 | Msa0537870 | 0.806080 | 9.784323e-50 | -8.615850e-47 |
| Msa0103780 | Msa0537870 | 0.809989 | 1.440454e-50 | -8.615850e-47 |
| Msa0110710 | Msa0537870 | 0.838165 | 3.382040e-57 | -8.615850e-47 |
| Msa0122180 | Msa0537870 | 0.828587 | 8.277324e-55 | -8.615850e-47 |
| Msa0132620 | Msa0537870 | 0.800346 | 1.504938e-48 | -8.615850e-47 |
| Msa0141670 | Msa0537870 | 0.803335 | 3.661950e-49 | -8.615850e-47 |
| Msa0146470 | Msa0537870 | 0.817356 | 3.441610e-52 | -8.615850e-47 |
| Msa0150210 | Msa0537870 | 0.819186 | 1.325540e-52 | -8.615850e-47 |
| Msa0157020 | Msa0537870 | 0.829055 | 6.374192e-55 | -8.615850e-47 |
| Msa0222070 | Msa0537870 | 0.800753 | 1.242831e-48 | -8.615850e-47 |
| Msa0222120 | Msa0537870 | 0.802966 | 4.364385e-49 | -8.615850e-47 |
| Msa0227490 | Msa0537870 | 0.802538 | 5.349182e-49 | -8.615850e-47 |
| Msa0227960 | Msa0537870 | 0.804553 | 2.044322e-49 | -8.615850e-47 |
| Msa0230400 | Msa0537870 | 0.846115 | 2.659668e-59 | -8.615850e-47 |
| Msa0380060 | Msa0537870 | 0.810140 | 1.336430e-50 | -8.615850e-47 |
| Msa0421800 | Msa0537870 | 0.819783 | 9.685649e-53 | -8.615850e-47 |
| Msa0429270 | Msa0537870 | 0.828774 | 7.455242e-55 | -8.615850e-47 |
| Msa0467800 | Msa0537870 | 0.802383 | 5.758567e-49 | -8.615850e-47 |
| Msa0263620 | Msa0537870 | 0.801387 | 9.224426e-49 | -8.615850e-47 |
| Msa0274780 | Msa0537870 | 0.852856 | 3.507177e-61 | -8.615850e-47 |
| Msa0311910 | Msa0537870 | 0.801333 | 9.461387e-49 | -8.615850e-47 |
| Msa0315480 | Msa0537870 | 0.803527 | 3.340694e-49 | -8.615850e-47 |
| Msa0320540 | Msa0537870 | 0.800395 | 1.470501e-48 | -8.615850e-47 |
| Msa0485280 | Msa0537870 | 0.811741 | 6.016952e-51 | -8.615850e-47 |
| Msa0514260 | Msa0537870 | 0.815781 | 7.753659e-52 | -8.615850e-47 |
| Msa0519200 | Msa0537870 | 0.806609 | 7.571437e-50 | -8.615850e-47 |
| Msa0534420 | Msa0537870 | 0.804849 | 1.772956e-49 | -8.615850e-47 |
| Msa0537860 | Msa0537870 | 0.808325 | 3.273329e-50 | -8.615850e-47 |
| Msa0537870 | Msa0537880 | 0.936040 | 3.276799e-97 | -8.615850e-47 |
| Msa0537870 | Msa0538260 | 0.937613 | 2.604132e-98 | -8.615850e-47 |
| Msa0537870 | Msa0538270 | 0.924714 | 4.870718e-90 | -8.615850e-47 |
| Msa0537870 | Msa0538570 | 0.843595 | 1.272318e-58 | -8.615850e-47 |
| Msa0537870 | Msa0540340 | 0.821887 | 3.178670e-53 | -8.615850e-47 |
| Msa0537870 | Msa0561510 | 0.808300 | 3.313540e-50 | -8.615850e-47 |
| Msa0537870 | Msa0594150 | 0.870987 | 9.627762e-67 | -8.615850e-47 |
| Msa0537870 | Msa0594180 | 0.854430 | 1.237118e-61 | -8.615850e-47 |
| Msa0537870 | Msa0594390 | 0.831595 | 1.526805e-55 | -8.615850e-47 |
| Msa0537870 | Msa0596080 | 0.804508 | 2.088969e-49 | -8.615850e-47 |
| Msa0537870 | Msa0600390 | 0.813549 | 2.419226e-51 | -8.615850e-47 |
| Msa0537870 | Msa0607280 | 0.818597 | 1.803555e-52 | -8.615850e-47 |
| Msa0537870 | Msa0614230 | 0.833600 | 4.857667e-56 | -8.615850e-47 |
| Msa0537870 | Msa0617120 | 0.839727 | 1.332640e-57 | -8.615850e-47 |
| Msa0537870 | Msa0633860 | 0.933928 | 8.868213e-96 | -8.615850e-47 |
| Msa0537870 | Msa0634270 | 0.832458 | 9.343103e-56 | -8.615850e-47 |
| Msa0537870 | Msa0634420 | 0.922963 | 4.955128e-89 | -8.615850e-47 |
| Msa0537870 | Msa0638710 | 0.822785 | 1.967534e-53 | -8.615850e-47 |
| Msa0537870 | Msa0640880 | 0.823014 | 1.739378e-53 | -8.615850e-47 |
| Msa0537870 | Msa0660820 | 0.836422 | 9.446297e-57 | -8.615850e-47 |
| Msa0537870 | Msa0686610 | 0.802726 | 4.891919e-49 | -8.615850e-47 |
| Msa0537870 | Msa0702070 | 0.800780 | 1.227230e-48 | -8.615850e-47 |
| Msa0537870 | Msa0705550 | 0.802017 | 6.847165e-49 | -8.615850e-47 |
| Msa0537870 | Msa0706410 | 0.820332 | 7.255429e-53 | -8.615850e-47 |
| Msa0537870 | Msa0719340 | 0.804803 | 1.812444e-49 | -8.615850e-47 |
| Msa0537870 | Msa0738870 | 0.838224 | 3.265570e-57 | -8.615850e-47 |
| Msa0537870 | Msa0740350 | -0.803278 | 3.763027e-49 | -8.615850e-47 |
| Msa0537870 | Msa0772150 | 0.803822 | 2.901511e-49 | -8.615850e-47 |
| Msa0537870 | Msa0803130 | 0.815201 | 1.043494e-51 | -8.615850e-47 |
| Msa0537870 | Msa0819320 | 0.806049 | 9.932527e-50 | -8.615850e-47 |
| Msa0537870 | Msa0819330 | 0.824306 | 8.671711e-54 | -8.615850e-47 |
| Msa0537870 | Msa0819360 | 0.808713 | 2.705137e-50 | -8.615850e-47 |
| Msa0537870 | Msa0819370 | 0.803315 | 3.697151e-49 | -8.615850e-47 |
| Msa0537870 | Msa0838660 | 0.838006 | 3.716569e-57 | -8.615850e-47 |
| Msa0537870 | Msa0841490 | 0.812696 | 3.723993e-51 | -8.615850e-47 |
| Msa0537870 | Msa0859520 | 0.824000 | 1.023009e-53 | -8.615850e-47 |
| Msa0537870 | Msa0875360 | 0.815912 | 7.248478e-52 | -8.615850e-47 |
| Msa0537870 | Msa0931480 | 0.845463 | 3.998922e-59 | -8.615850e-47 |
| Msa0537870 | Msa0950900 | 0.800565 | 1.357961e-48 | -8.615850e-47 |
| Msa0537870 | Msa0955310 | 0.818637 | 1.766874e-52 | -8.615850e-47 |
| Msa0537870 | Msa0992590 | 0.817914 | 2.575385e-52 | -8.615850e-47 |
| Msa0537870 | Msa1002040 | 0.808423 | 3.119224e-50 | -8.615850e-47 |
| Msa0537870 | Msa1004500 | 0.809504 | 1.831070e-50 | -8.615850e-47 |
| Msa0537870 | Msa1044040 | 0.804847 | 1.774410e-49 | -8.615850e-47 |
| Msa0537870 | Msa1070900 | 0.817224 | 3.683665e-52 | -8.615850e-47 |
| Msa0537870 | Msa1116010 | 0.812223 | 4.724122e-51 | -8.615850e-47 |
| Msa0537870 | Msa1134400 | 0.818133 | 2.297793e-52 | -8.615850e-47 |
| Msa0537870 | Msa1198450 | 0.822798 | 1.953157e-53 | -8.615850e-47 |
| Msa0537870 | Msa1200920 | 0.810389 | 1.180864e-50 | -8.615850e-47 |
| Msa0537870 | Msa1208510 | 0.849179 | 3.817048e-60 | -8.615850e-47 |
| Msa0537870 | Msa1220450 | -0.807062 | 6.072448e-50 | -8.615850e-47 |
| Msa0537870 | Msa1220460 | -0.800330 | 1.516282e-48 | -8.615850e-47 |
| Msa0537870 | Msa1220740 | 0.822772 | 1.980948e-53 | -8.615850e-47 |
| Msa0537870 | Msa1229640 | 0.881618 | 2.066416e-70 | -8.615850e-47 |
| Msa0537870 | Msa1258810 | 0.824980 | 6.015903e-54 | -8.615850e-47 |
| Msa0537870 | Msa1263590 | 0.837011 | 6.684949e-57 | -8.615850e-47 |
| Msa0537870 | Msa1263670 | 0.837721 | 4.397784e-57 | -8.615850e-47 |
| Msa0537870 | Msa1272340 | 0.866109 | 3.626036e-65 | -8.615850e-47 |
| Msa0537870 | Msa1284030 | 0.819816 | 9.519886e-53 | -8.615850e-47 |
| Msa0537870 | Msa1310250 | 0.867793 | 1.052915e-65 | -8.615850e-47 |
| Msa0537870 | Msa1310300 | 0.808122 | 3.617482e-50 | -8.615850e-47 |
| Msa0537870 | Msa1323060 | 0.819603 | 1.065166e-52 | -8.615850e-47 |
| Msa0537870 | Msa1327820 | 0.800854 | 1.185694e-48 | -8.615850e-47 |
| Msa0537870 | Msa1330240 | 0.839057 | 1.989440e-57 | -8.615850e-47 |
| Msa0537870 | Msa1334650 | 0.812414 | 4.290442e-51 | -8.615850e-47 |
| Msa0537870 | Msa1347030 | 0.921084 | 5.626945e-88 | -8.615850e-47 |
| Msa0537870 | Msa1354040 | 0.809242 | 2.084425e-50 | -8.615850e-47 |
| Msa0537870 | Msa1365210 | 0.832381 | 9.764985e-56 | -8.615850e-47 |
| Msa0537870 | Msa1367940 | 0.802200 | 6.280294e-49 | -8.615850e-47 |
| Msa0537870 | Msa1369860 | 0.844192 | 8.800726e-59 | -8.615850e-47 |
| Msa0537870 | Msa1405770 | 0.818771 | 1.647156e-52 | -8.615850e-47 |
| Msa0537870 | Msa1458920 | 0.800664 | 1.296166e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537870 | MtrunA17_Chr4g0012991 | 85.981 | 107 | 15 | 0 | 1 | 107 | 56 | 162 | 3.59e-61 | 184 |
| Msa0537870 | MtrunA17_Chr4g0013001 | 85.047 | 107 | 16 | 0 | 1 | 107 | 1 | 107 | 6.79e-61 | 182 |
| Msa0537870 | MtrunA17_Chr4g0012961 | 84.112 | 107 | 17 | 0 | 1 | 107 | 1 | 107 | 2.01e-60 | 181 |
| Msa0537870 | MtrunA17_Chr4g0012951 | 81.308 | 107 | 20 | 0 | 1 | 107 | 1 | 107 | 3.72e-59 | 177 |
| Msa0537870 | MtrunA17_Chr4g0013261 | 58.621 | 116 | 45 | 2 | 1 | 114 | 1 | 115 | 2.54e-41 | 132 |
| Msa0537870 | MtrunA17_Chr4g0013251 | 58.621 | 116 | 45 | 2 | 1 | 114 | 1 | 115 | 3.22e-40 | 130 |
| Msa0537870 | MtrunA17_Chr7g0244691 | 46.903 | 113 | 57 | 2 | 4 | 114 | 7 | 118 | 5.03e-30 | 104 |
| Msa0537870 | MtrunA17_Chr4g0013211 | 46.364 | 110 | 59 | 0 | 1 | 110 | 1 | 110 | 1.23e-29 | 103 |
| Msa0537870 | MtrunA17_Chr4g0012901 | 46.729 | 107 | 55 | 2 | 1 | 105 | 5 | 111 | 1.99e-27 | 97.8 |
| Msa0537870 | MtrunA17_Chr7g0244841 | 46.667 | 105 | 52 | 3 | 4 | 106 | 7 | 109 | 2.97e-26 | 94.7 |
| Msa0537870 | MtrunA17_Chr7g0244831 | 44.444 | 117 | 60 | 4 | 2 | 114 | 3 | 118 | 5.32e-26 | 94.0 |
| Msa0537870 | MtrunA17_Chr7g0244641 | 39.450 | 109 | 64 | 2 | 4 | 110 | 7 | 115 | 1.50e-24 | 90.5 |
| Msa0537870 | MtrunA17_Chr7g0244671 | 40.000 | 105 | 61 | 1 | 4 | 106 | 7 | 111 | 4.46e-24 | 90.1 |
| Msa0537870 | MtrunA17_Chr4g0012891 | 40.171 | 117 | 63 | 3 | 5 | 114 | 9 | 125 | 4.41e-23 | 86.7 |
| Msa0537870 | MtrunA17_Chr2g0309241 | 42.991 | 107 | 59 | 2 | 1 | 106 | 1 | 106 | 1.12e-22 | 85.5 |
| Msa0537870 | MtrunA17_Chr7g0244811 | 40.777 | 103 | 59 | 1 | 1 | 101 | 5 | 107 | 2.56e-22 | 84.7 |
| Msa0537870 | MtrunA17_Chr4g0012931 | 38.938 | 113 | 66 | 1 | 1 | 110 | 1 | 113 | 9.45e-22 | 83.6 |
| Msa0537870 | MtrunA17_Chr7g0244741 | 41.228 | 114 | 64 | 1 | 4 | 114 | 7 | 120 | 3.53e-20 | 79.3 |
| Msa0537870 | MtrunA17_Chr7g0244681 | 42.202 | 109 | 60 | 2 | 4 | 110 | 7 | 114 | 1.57e-19 | 77.4 |
| Msa0537870 | MtrunA17_Chr4g0012921 | 38.938 | 113 | 66 | 2 | 1 | 110 | 1 | 113 | 6.05e-18 | 73.6 |
| Msa0537870 | MtrunA17_Chr7g0244721 | 38.095 | 105 | 63 | 1 | 4 | 106 | 7 | 111 | 5.89e-17 | 70.9 |
| Msa0537870 | MtrunA17_Chr3g0107481 | 36.275 | 102 | 64 | 1 | 5 | 105 | 3 | 104 | 2.49e-16 | 69.3 |
| Msa0537870 | MtrunA17_Chr7g0233431 | 31.429 | 105 | 71 | 1 | 5 | 108 | 20 | 124 | 3.78e-16 | 69.3 |
| Msa0537870 | MtrunA17_Chr1g0165761 | 42.593 | 108 | 59 | 2 | 5 | 110 | 8 | 114 | 4.83e-16 | 68.6 |
| Msa0537870 | MtrunA17_Chr7g0244791 | 39.252 | 107 | 58 | 2 | 4 | 106 | 12 | 115 | 5.32e-16 | 68.6 |
| Msa0537870 | MtrunA17_Chr7g0244821 | 38.462 | 104 | 62 | 2 | 4 | 106 | 7 | 109 | 6.43e-16 | 68.6 |
| Msa0537870 | MtrunA17_Chr7g0244761 | 37.037 | 108 | 67 | 1 | 4 | 110 | 32 | 139 | 9.77e-16 | 68.6 |
| Msa0537870 | MtrunA17_Chr7g0244661 | 39.823 | 113 | 60 | 3 | 4 | 114 | 7 | 113 | 5.06e-15 | 65.9 |
| Msa0537870 | MtrunA17_Chr7g0244751 | 33.929 | 112 | 73 | 1 | 4 | 114 | 7 | 118 | 1.44e-13 | 62.4 |
| Msa0537870 | MtrunA17_Chr3g0105001 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 4.54e-13 | 60.8 |
| Msa0537870 | MtrunA17_Chr3g0104971 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 9.84e-13 | 60.1 |
| Msa0537870 | MtrunA17_Chr3g0104981 | 35.514 | 107 | 61 | 4 | 4 | 103 | 7 | 112 | 1.04e-12 | 60.1 |
| Msa0537870 | MtrunA17_Chr3g0105021 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 1.11e-12 | 60.1 |
| Msa0537870 | MtrunA17_Chr3g0105011 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 1.11e-12 | 60.1 |
| Msa0537870 | MtrunA17_Chr3g0104951 | 39.759 | 83 | 45 | 3 | 25 | 103 | 31 | 112 | 1.31e-12 | 59.7 |
| Msa0537870 | MtrunA17_Chr3g0104931 | 39.759 | 83 | 45 | 3 | 25 | 103 | 31 | 112 | 1.31e-12 | 59.7 |
| Msa0537870 | MtrunA17_Chr3g0104941 | 39.759 | 83 | 45 | 3 | 25 | 103 | 31 | 112 | 1.31e-12 | 59.7 |
| Msa0537870 | MtrunA17_Chr3g0095991 | 35.238 | 105 | 62 | 4 | 3 | 103 | 10 | 112 | 1.59e-12 | 59.7 |
| Msa0537870 | MtrunA17_Chr3g0104921 | 39.286 | 84 | 46 | 3 | 25 | 104 | 21 | 103 | 1.60e-12 | 59.3 |
| Msa0537870 | MtrunA17_Chr3g0104911 | 39.286 | 84 | 46 | 3 | 25 | 104 | 21 | 103 | 1.60e-12 | 59.3 |
| Msa0537870 | MtrunA17_Chr3g0104991 | 37.255 | 102 | 56 | 4 | 9 | 103 | 12 | 112 | 2.58e-12 | 58.9 |
| Msa0537870 | MtrunA17_Chr3g0104901 | 33.628 | 113 | 64 | 5 | 1 | 103 | 1 | 112 | 3.27e-12 | 58.9 |
| Msa0537870 | MtrunA17_Chr3g0105041 | 39.759 | 83 | 45 | 3 | 25 | 103 | 31 | 112 | 4.70e-12 | 58.5 |
| Msa0537870 | MtrunA17_Chr3g0105031 | 36.190 | 105 | 59 | 4 | 9 | 106 | 2 | 105 | 5.60e-12 | 57.8 |
| Msa0537870 | MtrunA17_Chr7g0244731 | 48.529 | 68 | 32 | 2 | 25 | 90 | 57 | 123 | 8.05e-12 | 58.5 |
| Msa0537870 | MtrunA17_Chr3g0095951 | 37.349 | 83 | 47 | 3 | 25 | 103 | 31 | 112 | 1.57e-11 | 57.0 |
| Msa0537870 | MtrunA17_Chr3g0096021 | 37.349 | 83 | 47 | 3 | 25 | 103 | 31 | 112 | 1.68e-11 | 57.0 |
| Msa0537870 | MtrunA17_Chr3g0104961 | 34.579 | 107 | 62 | 4 | 4 | 103 | 7 | 112 | 1.75e-11 | 57.0 |
| Msa0537870 | MtrunA17_Chr3g0101431 | 39.241 | 79 | 45 | 2 | 25 | 101 | 30 | 107 | 1.87e-11 | 57.0 |
| Msa0537870 | MtrunA17_Chr3g0096031 | 37.349 | 83 | 47 | 3 | 25 | 103 | 31 | 112 | 2.36e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537870 | AT5G59320.1 | 53.211 | 109 | 49 | 1 | 6 | 114 | 8 | 114 | 5.36e-34 | 114 |
| Msa0537870 | AT2G38540.1 | 53.509 | 114 | 49 | 4 | 4 | 114 | 5 | 117 | 1.38e-31 | 108 |
| Msa0537870 | AT5G59310.1 | 55.670 | 97 | 40 | 1 | 11 | 107 | 11 | 104 | 1.27e-30 | 105 |
| Msa0537870 | AT2G38530.1 | 50.442 | 113 | 54 | 2 | 4 | 114 | 5 | 117 | 2.71e-28 | 100 |
| Msa0537870 | AT3G51600.1 | 48.246 | 114 | 55 | 4 | 4 | 114 | 5 | 117 | 3.76e-25 | 92.0 |
| Msa0537870 | AT2G15050.3 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 6.54e-25 | 91.7 |
| Msa0537870 | AT2G15050.2 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 7.49e-25 | 91.3 |
| Msa0537870 | AT2G15050.1 | 45.192 | 104 | 53 | 3 | 4 | 103 | 5 | 108 | 9.95e-25 | 91.3 |
| Msa0537870 | AT3G51590.1 | 40.541 | 111 | 63 | 3 | 6 | 115 | 8 | 116 | 7.86e-24 | 89.0 |
| Msa0537870 | AT4G33355.2 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 2.87e-23 | 87.4 |
| Msa0537870 | AT4G33355.1 | 55.128 | 78 | 35 | 0 | 24 | 101 | 28 | 105 | 3.03e-23 | 87.4 |
| Msa0537870 | AT5G01870.1 | 43.269 | 104 | 51 | 4 | 9 | 105 | 4 | 106 | 3.02e-20 | 79.7 |
| Msa0537870 | AT3G08770.1 | 41.667 | 96 | 52 | 3 | 22 | 114 | 18 | 112 | 8.97e-17 | 70.9 |
| Msa0537870 | AT3G08770.2 | 41.414 | 99 | 54 | 3 | 22 | 117 | 18 | 115 | 1.08e-16 | 70.5 |
| Msa0537870 | AT2G18370.1 | 37.500 | 104 | 62 | 3 | 1 | 102 | 1 | 103 | 8.94e-16 | 68.2 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTGCTGGTGCTATTTC+TGG | 0.136175 | 4_1:+16898262 | Msa0537870:CDS |
| ATTATTCTTAATATCGTTAA+AGG | 0.191944 | 4_1:-16898791 | None:intergenic |
| ATGACGTGGCTCCAAGATTA+TGG | 0.335965 | 4_1:+16898741 | Msa0537870:CDS |
| GGCGCAGCTTCTTCTCTTCC+TGG | 0.339122 | 4_1:+16898295 | Msa0537870:CDS |
| CCATGCATTGGATATCTTAG+AGG | 0.354250 | 4_1:+16898139 | Msa0537870:CDS |
| GCTATTTCTGGTTTGAATAC+AGG | 0.359485 | 4_1:+16898274 | Msa0537870:CDS |
| CCATCTCCAGCATGCTGTGC+TGG | 0.375274 | 4_1:+16898172 | Msa0537870:CDS |
| TTGAGCAGTTACCATAATCT+TGG | 0.379849 | 4_1:-16898752 | None:intergenic |
| TTATTCTTAATATCGTTAAA+GGG | 0.415188 | 4_1:-16898790 | None:intergenic |
| TTGCAAGCAGCCTGACGGTC+AGG | 0.428772 | 4_1:-16898229 | None:intergenic |
| CACTACCACACCTGACCGTC+AGG | 0.433614 | 4_1:+16898219 | Msa0537870:CDS |
| GGTGCTCTTTCTCCATGCAT+TGG | 0.474474 | 4_1:+16898127 | Msa0537870:CDS |
| CTGACGGTCAGGTGTGGTAG+TGG | 0.482598 | 4_1:-16898218 | None:intergenic |
| TTCACTCCAGCACAGCATGC+TGG | 0.485039 | 4_1:-16898178 | None:intergenic |
| AACTGCTTGAAAAGTGCTGC+TGG | 0.486030 | 4_1:+16898250 | Msa0537870:CDS |
| ATGTTAACGCCACATTTGCC+AGG | 0.486943 | 4_1:-16898313 | None:intergenic |
| GTGCGTGATTGTTGCACCTA+TGG | 0.496206 | 4_1:+16898072 | Msa0537870:CDS |
| CAAGTCTTGTACAAGAGGAT+AGG | 0.502752 | 4_1:-16898848 | None:intergenic |
| GGATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4_1:+16898148 | Msa0537870:CDS |
| GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | 4_1:-16898337 | None:intergenic |
| AAGTCTTGTACAAGAGGATA+GGG | 0.528815 | 4_1:-16898847 | None:intergenic |
| GTCAGGTGTGGTAGTGGCGG+CGG | 0.531452 | 4_1:-16898212 | None:intergenic |
| AAGAATAATAATGAGAGTGA+TGG | 0.537116 | 4_1:+16898805 | Msa0537870:three_prime_UTR |
| TGATACAAGTCTTGTACAAG+AGG | 0.547117 | 4_1:-16898853 | None:intergenic |
| CCAGCACAGCATGCTGGAGA+TGG | 0.550113 | 4_1:-16898172 | None:intergenic |
| TTGTTATACTTACAGCATCA+GGG | 0.577540 | 4_1:+16898708 | Msa0537870:intron |
| GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4_1:-16898088 | None:intergenic |
| TCTTCTCTTCCTGGCAAATG+TGG | 0.581280 | 4_1:+16898304 | Msa0537870:CDS |
| AAACAATATGGCAAGCATGA+AGG | 0.586081 | 4_1:+16898027 | None:intergenic |
| ATGGAGACTCATCTTATATG+TGG | 0.597131 | 4_1:+16898824 | Msa0537870:three_prime_UTR |
| CCTCTAAGATATCCAATGCA+TGG | 0.598915 | 4_1:-16898139 | None:intergenic |
| AGCAGCCTGACGGTCAGGTG+TGG | 0.616597 | 4_1:-16898224 | None:intergenic |
| TGCATTGGATATCTTAGAGG+TGG | 0.623803 | 4_1:+16898142 | Msa0537870:CDS |
| AGCAGTTGCAAGCAGCCTGA+CGG | 0.624471 | 4_1:-16898234 | None:intergenic |
| ACGGTCAGGTGTGGTAGTGG+CGG | 0.626810 | 4_1:-16898215 | None:intergenic |
| ATAAGAGTAATGAGATAACA+AGG | 0.648698 | 4_1:-16898910 | None:intergenic |
| GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4_1:+16898094 | Msa0537870:CDS |
| AGGGCATGAAGATGATGACG+TGG | 0.717062 | 4_1:+16898727 | Msa0537870:CDS |
| ATCTCATGTGGACAAGTGAG+TGG | 0.724614 | 4_1:+16898106 | Msa0537870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTATTAAAAAAATA+TGG | - | chr4_1:16898580-16898599 | None:intergenic | 0.0% |
| !!! | AAAATTTTATTAAAAAAATA+TGG | - | chr4_1:16898580-16898599 | None:intergenic | 0.0% |
| !!! | TAAATCATTCTTTTAATTTT+AGG | + | chr4_1:16898502-16898521 | Msa0537870:intron | 10.0% |
| !!! | TTTATATTATTCAATGTTTT+TGG | + | chr4_1:16898598-16898617 | Msa0537870:intron | 10.0% |
| !!! | TTATATTATTCAATGTTTTT+GGG | + | chr4_1:16898599-16898618 | Msa0537870:intron | 10.0% |
| !!! | TAAATCATTCTTTTAATTTT+AGG | + | chr4_1:16898502-16898521 | Msa0537870:intron | 10.0% |
| !!! | TTTATATTATTCAATGTTTT+TGG | + | chr4_1:16898598-16898617 | Msa0537870:intron | 10.0% |
| !!! | TTATATTATTCAATGTTTTT+GGG | + | chr4_1:16898599-16898618 | Msa0537870:intron | 10.0% |
| !!! | AAAATTTAGTTGTTTAACTT+TGG | - | chr4_1:16898459-16898478 | None:intergenic | 15.0% |
| !! | TTATTCTTAATATCGTTAAA+GGG | - | chr4_1:16898793-16898812 | None:intergenic | 15.0% |
| !! | ATTATTCTTAATATCGTTAA+AGG | - | chr4_1:16898794-16898813 | None:intergenic | 15.0% |
| !!! | AAAATTTAGTTGTTTAACTT+TGG | - | chr4_1:16898459-16898478 | None:intergenic | 15.0% |
| !! | TTATTCTTAATATCGTTAAA+GGG | - | chr4_1:16898793-16898812 | None:intergenic | 15.0% |
| !! | ATTATTCTTAATATCGTTAA+AGG | - | chr4_1:16898794-16898813 | None:intergenic | 15.0% |
| !!! | TATTTTTTACCATTTGCTTA+AGG | + | chr4_1:16898543-16898562 | Msa0537870:intron | 20.0% |
| !!! | TATTTTTTACCATTTGCTTA+AGG | + | chr4_1:16898543-16898562 | Msa0537870:intron | 20.0% |
| ! | TTAAAACATCCTTAAGCAAA+TGG | - | chr4_1:16898555-16898574 | None:intergenic | 25.0% |
| !!! | CTACGAATCTACTTTTTTAT+TGG | + | chr4_1:16898643-16898662 | Msa0537870:intron | 25.0% |
| !! | TAGAAAATTAATCACTGACT+AGG | + | chr4_1:16898675-16898694 | Msa0537870:intron | 25.0% |
| ! | AAGAATAATAATGAGAGTGA+TGG | + | chr4_1:16898805-16898824 | Msa0537870:three_prime_UTR | 25.0% |
| ! | TTAAAACATCCTTAAGCAAA+TGG | - | chr4_1:16898555-16898574 | None:intergenic | 25.0% |
| !!! | CTACGAATCTACTTTTTTAT+TGG | + | chr4_1:16898643-16898662 | Msa0537870:intron | 25.0% |
| !! | TAGAAAATTAATCACTGACT+AGG | + | chr4_1:16898675-16898694 | Msa0537870:intron | 25.0% |
| ! | AAGAATAATAATGAGAGTGA+TGG | + | chr4_1:16898805-16898824 | Msa0537870:three_prime_UTR | 25.0% |
| ACTAGACTACTTGAAAAATG+AGG | - | chr4_1:16898411-16898430 | None:intergenic | 30.0% | |
| ! | TTTACCATTTGAGATTGTTG+AGG | + | chr4_1:16898478-16898497 | Msa0537870:intron | 30.0% |
| ! | TTACCATTTGAGATTGTTGA+GGG | + | chr4_1:16898479-16898498 | Msa0537870:intron | 30.0% |
| ! | TTTGTTATACTTACAGCATC+AGG | + | chr4_1:16898707-16898726 | Msa0537870:intron | 30.0% |
| TTGTTATACTTACAGCATCA+GGG | + | chr4_1:16898708-16898727 | Msa0537870:intron | 30.0% | |
| ACTAGACTACTTGAAAAATG+AGG | - | chr4_1:16898411-16898430 | None:intergenic | 30.0% | |
| ! | TTTACCATTTGAGATTGTTG+AGG | + | chr4_1:16898478-16898497 | Msa0537870:intron | 30.0% |
| ! | TTACCATTTGAGATTGTTGA+GGG | + | chr4_1:16898479-16898498 | Msa0537870:intron | 30.0% |
| ! | TTTGTTATACTTACAGCATC+AGG | + | chr4_1:16898707-16898726 | Msa0537870:intron | 30.0% |
| TTGTTATACTTACAGCATCA+GGG | + | chr4_1:16898708-16898727 | Msa0537870:intron | 30.0% | |
| !! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4_1:16898274-16898293 | Msa0537870:CDS | 35.0% |
| ATAAACATACGTAGCACAGT+TGG | - | chr4_1:16898362-16898381 | None:intergenic | 35.0% | |
| TTACCCTCAACAATCTCAAA+TGG | - | chr4_1:16898485-16898504 | None:intergenic | 35.0% | |
| TTGAGCAGTTACCATAATCT+TGG | - | chr4_1:16898755-16898774 | None:intergenic | 35.0% | |
| ATGGAGACTCATCTTATATG+TGG | + | chr4_1:16898824-16898843 | Msa0537870:three_prime_UTR | 35.0% | |
| ! | AAGTCTTGTACAAGAGGATA+GGG | - | chr4_1:16898850-16898869 | None:intergenic | 35.0% |
| ! | TGATACAAGTCTTGTACAAG+AGG | - | chr4_1:16898856-16898875 | None:intergenic | 35.0% |
| !! | GCTATTTCTGGTTTGAATAC+AGG | + | chr4_1:16898274-16898293 | Msa0537870:CDS | 35.0% |
| ATAAACATACGTAGCACAGT+TGG | - | chr4_1:16898362-16898381 | None:intergenic | 35.0% | |
| TTACCCTCAACAATCTCAAA+TGG | - | chr4_1:16898485-16898504 | None:intergenic | 35.0% | |
| TTGAGCAGTTACCATAATCT+TGG | - | chr4_1:16898755-16898774 | None:intergenic | 35.0% | |
| ATGGAGACTCATCTTATATG+TGG | + | chr4_1:16898824-16898843 | Msa0537870:three_prime_UTR | 35.0% | |
| ! | AAGTCTTGTACAAGAGGATA+GGG | - | chr4_1:16898850-16898869 | None:intergenic | 35.0% |
| ! | TGATACAAGTCTTGTACAAG+AGG | - | chr4_1:16898856-16898875 | None:intergenic | 35.0% |
| !! | CCTCTAAGATATCCAATGCA+TGG | - | chr4_1:16898142-16898161 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | + | chr4_1:16898139-16898158 | Msa0537870:CDS | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | + | chr4_1:16898142-16898161 | Msa0537870:CDS | 40.0% | |
| ! | CAAGTCTTGTACAAGAGGAT+AGG | - | chr4_1:16898851-16898870 | None:intergenic | 40.0% |
| !! | CCTCTAAGATATCCAATGCA+TGG | - | chr4_1:16898142-16898161 | None:intergenic | 40.0% |
| CCATGCATTGGATATCTTAG+AGG | + | chr4_1:16898139-16898158 | Msa0537870:CDS | 40.0% | |
| TGCATTGGATATCTTAGAGG+TGG | + | chr4_1:16898142-16898161 | Msa0537870:CDS | 40.0% | |
| ! | CAAGTCTTGTACAAGAGGAT+AGG | - | chr4_1:16898851-16898870 | None:intergenic | 40.0% |
| ATCTCATGTGGACAAGTGAG+TGG | + | chr4_1:16898106-16898125 | Msa0537870:CDS | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4_1:16898250-16898269 | Msa0537870:CDS | 45.0% |
| TCTTCTCTTCCTGGCAAATG+TGG | + | chr4_1:16898304-16898323 | Msa0537870:CDS | 45.0% | |
| ATGTTAACGCCACATTTGCC+AGG | - | chr4_1:16898316-16898335 | None:intergenic | 45.0% | |
| !! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4_1:16898340-16898359 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | - | chr4_1:16898359-16898378 | None:intergenic | 45.0% | |
| ATGACGTGGCTCCAAGATTA+TGG | + | chr4_1:16898741-16898760 | Msa0537870:CDS | 45.0% | |
| ATCTCATGTGGACAAGTGAG+TGG | + | chr4_1:16898106-16898125 | Msa0537870:CDS | 45.0% | |
| !! | AACTGCTTGAAAAGTGCTGC+TGG | + | chr4_1:16898250-16898269 | Msa0537870:CDS | 45.0% |
| TCTTCTCTTCCTGGCAAATG+TGG | + | chr4_1:16898304-16898323 | Msa0537870:CDS | 45.0% | |
| ATGTTAACGCCACATTTGCC+AGG | - | chr4_1:16898316-16898335 | None:intergenic | 45.0% | |
| !! | GTGGAGGTACTGATCTTGTA+AGG | - | chr4_1:16898340-16898359 | None:intergenic | 45.0% |
| AACATACGTAGCACAGTTGG+TGG | - | chr4_1:16898359-16898378 | None:intergenic | 45.0% | |
| ATGACGTGGCTCCAAGATTA+TGG | + | chr4_1:16898741-16898760 | Msa0537870:CDS | 45.0% | |
| GTGCGTGATTGTTGCACCTA+TGG | + | chr4_1:16898072-16898091 | Msa0537870:CDS | 50.0% | |
| GAGATTGCAGCATCTGCCAT+AGG | - | chr4_1:16898091-16898110 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | + | chr4_1:16898094-16898113 | Msa0537870:CDS | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | + | chr4_1:16898127-16898146 | Msa0537870:CDS | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | + | chr4_1:16898148-16898167 | Msa0537870:CDS | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4_1:16898262-16898281 | Msa0537870:CDS | 50.0% |
| !! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4_1:16898356-16898375 | None:intergenic | 50.0% |
| ! | AGGGCATGAAGATGATGACG+TGG | + | chr4_1:16898727-16898746 | Msa0537870:CDS | 50.0% |
| GTGCGTGATTGTTGCACCTA+TGG | + | chr4_1:16898072-16898091 | Msa0537870:CDS | 50.0% | |
| GAGATTGCAGCATCTGCCAT+AGG | - | chr4_1:16898091-16898110 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | + | chr4_1:16898094-16898113 | Msa0537870:CDS | 50.0% | |
| GGTGCTCTTTCTCCATGCAT+TGG | + | chr4_1:16898127-16898146 | Msa0537870:CDS | 50.0% | |
| GGATATCTTAGAGGTGGTGC+TGG | + | chr4_1:16898148-16898167 | Msa0537870:CDS | 50.0% | |
| !! | AGTGCTGCTGGTGCTATTTC+TGG | + | chr4_1:16898262-16898281 | Msa0537870:CDS | 50.0% |
| !! | ATACGTAGCACAGTTGGTGG+AGG | - | chr4_1:16898356-16898375 | None:intergenic | 50.0% |
| ! | AGGGCATGAAGATGATGACG+TGG | + | chr4_1:16898727-16898746 | Msa0537870:CDS | 50.0% |
| TTCACTCCAGCACAGCATGC+TGG | - | chr4_1:16898181-16898200 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | - | chr4_1:16898237-16898256 | None:intergenic | 55.0% | |
| TTCACTCCAGCACAGCATGC+TGG | - | chr4_1:16898181-16898200 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | - | chr4_1:16898237-16898256 | None:intergenic | 55.0% | |
| CCAGCACAGCATGCTGGAGA+TGG | - | chr4_1:16898175-16898194 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGC+TGG | + | chr4_1:16898172-16898191 | Msa0537870:CDS | 60.0% | |
| !! | ACGGTCAGGTGTGGTAGTGG+CGG | - | chr4_1:16898218-16898237 | None:intergenic | 60.0% |
| CTGACGGTCAGGTGTGGTAG+TGG | - | chr4_1:16898221-16898240 | None:intergenic | 60.0% | |
| CACTACCACACCTGACCGTC+AGG | + | chr4_1:16898219-16898238 | Msa0537870:CDS | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | - | chr4_1:16898232-16898251 | None:intergenic | 60.0% | |
| GGCGCAGCTTCTTCTCTTCC+TGG | + | chr4_1:16898295-16898314 | Msa0537870:CDS | 60.0% | |
| CCAGCACAGCATGCTGGAGA+TGG | - | chr4_1:16898175-16898194 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGC+TGG | + | chr4_1:16898172-16898191 | Msa0537870:CDS | 60.0% | |
| !! | ACGGTCAGGTGTGGTAGTGG+CGG | - | chr4_1:16898218-16898237 | None:intergenic | 60.0% |
| CTGACGGTCAGGTGTGGTAG+TGG | - | chr4_1:16898221-16898240 | None:intergenic | 60.0% | |
| CACTACCACACCTGACCGTC+AGG | + | chr4_1:16898219-16898238 | Msa0537870:CDS | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | - | chr4_1:16898232-16898251 | None:intergenic | 60.0% | |
| GGCGCAGCTTCTTCTCTTCC+TGG | + | chr4_1:16898295-16898314 | Msa0537870:CDS | 60.0% | |
| !! | GTCAGGTGTGGTAGTGGCGG+CGG | - | chr4_1:16898215-16898234 | None:intergenic | 65.0% |
| AGCAGCCTGACGGTCAGGTG+TGG | - | chr4_1:16898227-16898246 | None:intergenic | 65.0% | |
| !! | GTCAGGTGTGGTAGTGGCGG+CGG | - | chr4_1:16898215-16898234 | None:intergenic | 65.0% |
| AGCAGCCTGACGGTCAGGTG+TGG | - | chr4_1:16898227-16898246 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16898034 | 16898917 | 16898034 | ID=Msa0537870;Name=Msa0537870 |
| chr4_1 | mRNA | 16898034 | 16898917 | 16898034 | ID=Msa0537870-mRNA-1;Parent=Msa0537870;Name=Msa0537870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0.5|1|1|1|2|151|119 |
| chr4_1 | exon | 16898034 | 16898349 | 16898034 | ID=Msa0537870-mRNA-1:exon:4998;Parent=Msa0537870-mRNA-1 |
| chr4_1 | exon | 16898723 | 16898917 | 16898723 | ID=Msa0537870-mRNA-1:exon:4999;Parent=Msa0537870-mRNA-1 |
| chr4_1 | CDS | 16898034 | 16898349 | 16898034 | ID=Msa0537870-mRNA-1:cds;Parent=Msa0537870-mRNA-1 |
| chr4_1 | CDS | 16898723 | 16898766 | 16898723 | ID=Msa0537870-mRNA-1:cds;Parent=Msa0537870-mRNA-1 |
| chr4_1 | three_prime_UTR | 16898767 | 16898917 | 16898767 | ID=Msa0537870-mRNA-1:three_prime_utr;Parent=Msa0537870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
