Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542110 | XP_024636796.1 | 94.098 | 915 | 26 | 2 | 1 | 890 | 1 | 912 | 0.0 | 1783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542110 | sp|O22864|NLP8_ARATH | 47.585 | 973 | 377 | 27 | 1 | 884 | 1 | 929 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542110 | G7JDS3 | 94.098 | 915 | 26 | 2 | 1 | 890 | 1 | 912 | 0.0 | 1783 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0542110 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0542110 | Msa0542150 | 0.967619 | 1.577829e-127 | -8.615850e-47 |
| Msa0542110 | Msa0604980 | 0.898812 | 3.676465e-77 | -8.615850e-47 |
| Msa0542110 | Msa0685160 | 0.970063 | 4.741252e-131 | -8.615850e-47 |
| Msa0542110 | Msa0945460 | 0.890539 | 8.991846e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542110 | MtrunA17_Chr4g0033791 | 94.098 | 915 | 26 | 2 | 1 | 890 | 1 | 912 | 0.0 | 1783 |
| Msa0542110 | MtrunA17_Chr2g0329671 | 57.708 | 960 | 316 | 19 | 1 | 884 | 1 | 946 | 0.0 | 1017 |
| Msa0542110 | MtrunA17_Chr6g0472281 | 35.338 | 798 | 388 | 21 | 150 | 884 | 112 | 844 | 2.55e-125 | 399 |
| Msa0542110 | MtrunA17_Chr3g0143921 | 37.729 | 546 | 272 | 13 | 149 | 638 | 138 | 671 | 1.17e-104 | 345 |
| Msa0542110 | MtrunA17_Chr1g0203081 | 39.279 | 527 | 271 | 12 | 150 | 632 | 124 | 645 | 1.20e-101 | 338 |
| Msa0542110 | MtrunA17_Chr1g0203081 | 44.444 | 81 | 44 | 1 | 805 | 884 | 886 | 966 | 2.55e-15 | 80.9 |
| Msa0542110 | MtrunA17_Chr5g0448621 | 32.055 | 365 | 175 | 11 | 146 | 475 | 122 | 448 | 3.04e-39 | 157 |
| Msa0542110 | MtrunA17_Chr5g0448621 | 67.778 | 90 | 25 | 1 | 551 | 640 | 607 | 692 | 2.68e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542110 | AT2G43500.3 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.9 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.6 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.1 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.10 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.11 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.7 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.8 | 48.283 | 961 | 375 | 26 | 1 | 884 | 1 | 916 | 0.0 | 741 |
| Msa0542110 | AT2G43500.5 | 47.639 | 974 | 375 | 26 | 1 | 884 | 1 | 929 | 0.0 | 735 |
| Msa0542110 | AT2G43500.4 | 47.639 | 974 | 375 | 26 | 1 | 884 | 1 | 929 | 0.0 | 735 |
| Msa0542110 | AT2G43500.2 | 47.585 | 973 | 377 | 27 | 1 | 884 | 1 | 929 | 0.0 | 729 |
| Msa0542110 | AT3G59580.2 | 47.935 | 920 | 358 | 25 | 19 | 884 | 23 | 875 | 0.0 | 702 |
| Msa0542110 | AT3G59580.3 | 47.935 | 920 | 358 | 25 | 19 | 884 | 23 | 875 | 0.0 | 702 |
| Msa0542110 | AT3G59580.1 | 47.935 | 920 | 358 | 25 | 19 | 884 | 23 | 875 | 0.0 | 702 |
| Msa0542110 | AT1G76350.2 | 40.454 | 529 | 250 | 13 | 148 | 627 | 104 | 616 | 3.49e-108 | 352 |
| Msa0542110 | AT1G76350.1 | 40.454 | 529 | 250 | 13 | 148 | 627 | 104 | 616 | 3.49e-108 | 352 |
| Msa0542110 | AT1G76350.4 | 40.454 | 529 | 250 | 13 | 148 | 627 | 104 | 616 | 3.49e-108 | 352 |
| Msa0542110 | AT1G76350.3 | 40.454 | 529 | 250 | 13 | 148 | 627 | 104 | 616 | 3.49e-108 | 352 |
| Msa0542110 | AT1G64530.1 | 39.779 | 543 | 269 | 13 | 145 | 631 | 87 | 627 | 3.75e-108 | 353 |
| Msa0542110 | AT1G64530.1 | 45.679 | 81 | 42 | 2 | 805 | 884 | 744 | 823 | 1.90e-13 | 75.1 |
| Msa0542110 | AT1G20640.1 | 39.746 | 551 | 253 | 13 | 149 | 640 | 104 | 634 | 1.71e-107 | 351 |
| Msa0542110 | AT1G20640.3 | 39.746 | 551 | 253 | 13 | 149 | 640 | 104 | 634 | 1.71e-107 | 351 |
| Msa0542110 | AT1G20640.2 | 39.746 | 551 | 253 | 13 | 149 | 640 | 104 | 634 | 1.71e-107 | 351 |
| Msa0542110 | AT4G24020.1 | 38.179 | 571 | 284 | 15 | 115 | 631 | 107 | 662 | 4.76e-100 | 334 |
| Msa0542110 | AT4G24020.1 | 45.000 | 80 | 44 | 0 | 805 | 884 | 866 | 945 | 1.18e-16 | 85.5 |
| Msa0542110 | AT1G64530.2 | 40.611 | 458 | 215 | 13 | 222 | 631 | 24 | 472 | 1.63e-93 | 310 |
| Msa0542110 | AT1G64530.2 | 53.125 | 64 | 29 | 1 | 805 | 867 | 589 | 652 | 1.63e-13 | 75.1 |
| Msa0542110 | AT2G17150.1 | 35.678 | 583 | 275 | 15 | 143 | 638 | 117 | 686 | 3.82e-91 | 309 |
| Msa0542110 | AT2G17150.1 | 43.421 | 76 | 42 | 1 | 805 | 879 | 814 | 889 | 6.87e-12 | 70.1 |
| Msa0542110 | AT2G17150.6 | 35.678 | 583 | 275 | 15 | 143 | 638 | 117 | 686 | 3.82e-91 | 309 |
| Msa0542110 | AT2G17150.6 | 43.421 | 76 | 42 | 1 | 805 | 879 | 814 | 889 | 6.87e-12 | 70.1 |
| Msa0542110 | AT4G35270.2 | 33.333 | 597 | 281 | 19 | 143 | 638 | 146 | 726 | 8.16e-82 | 284 |
| Msa0542110 | AT4G35270.2 | 38.462 | 78 | 47 | 1 | 805 | 881 | 865 | 942 | 7.47e-11 | 66.6 |
| Msa0542110 | AT4G35270.1 | 33.333 | 597 | 281 | 19 | 143 | 638 | 146 | 726 | 8.16e-82 | 284 |
| Msa0542110 | AT4G35270.1 | 38.462 | 78 | 47 | 1 | 805 | 881 | 865 | 942 | 7.47e-11 | 66.6 |
| Msa0542110 | AT4G35270.3 | 33.333 | 597 | 281 | 19 | 143 | 638 | 146 | 726 | 8.16e-82 | 284 |
| Msa0542110 | AT4G35270.3 | 38.462 | 78 | 47 | 1 | 805 | 881 | 865 | 942 | 7.47e-11 | 66.6 |
| Msa0542110 | AT4G35270.4 | 33.333 | 597 | 281 | 19 | 143 | 638 | 146 | 726 | 8.16e-82 | 284 |
| Msa0542110 | AT4G35270.4 | 38.462 | 78 | 47 | 1 | 805 | 881 | 865 | 942 | 7.47e-11 | 66.6 |
| Msa0542110 | AT4G38340.2 | 34.165 | 521 | 248 | 14 | 145 | 631 | 39 | 498 | 7.41e-74 | 256 |
| Msa0542110 | AT4G38340.1 | 33.526 | 519 | 250 | 13 | 145 | 629 | 110 | 567 | 3.54e-73 | 256 |
| Msa0542110 | AT4G24020.2 | 40.947 | 359 | 181 | 7 | 292 | 631 | 36 | 382 | 1.80e-69 | 244 |
| Msa0542110 | AT4G24020.2 | 45.000 | 80 | 44 | 0 | 805 | 884 | 586 | 665 | 9.22e-17 | 85.5 |
| Msa0542110 | AT2G17150.4 | 36.802 | 394 | 182 | 9 | 300 | 638 | 50 | 431 | 3.18e-64 | 229 |
| Msa0542110 | AT2G17150.4 | 43.421 | 76 | 42 | 1 | 805 | 879 | 559 | 634 | 4.21e-12 | 70.5 |
| Msa0542110 | AT2G17150.5 | 32.258 | 527 | 257 | 15 | 143 | 582 | 117 | 630 | 3.56e-63 | 226 |
| Msa0542110 | AT2G17150.3 | 32.258 | 527 | 257 | 15 | 143 | 582 | 117 | 630 | 3.56e-63 | 226 |
| Msa0542110 | AT2G17150.2 | 31.749 | 526 | 258 | 15 | 143 | 582 | 117 | 627 | 5.63e-62 | 222 |
Find 149 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 4_1:-26198861 | Msa0542110:CDS |
| TGCGATTAGTCACGAGGTTC+GGG | 0.268648 | 4_1:-26198570 | Msa0542110:CDS |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.288875 | 4_1:+26199317 | None:intergenic |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 4_1:-26197820 | Msa0542110:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 4_1:-26195553 | Msa0542110:CDS |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 4_1:-26198674 | Msa0542110:CDS |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 4_1:-26196150 | Msa0542110:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 4_1:-26198002 | Msa0542110:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 4_1:+26196297 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 4_1:-26198950 | Msa0542110:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 4_1:-26197752 | Msa0542110:CDS |
| CTTTCATCATTTGCATATGA+TGG | 0.328114 | 4_1:-26199136 | Msa0542110:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 4_1:-26199109 | Msa0542110:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 4_1:-26197682 | Msa0542110:CDS |
| TTTCGCAGCGTGTGAATCTA+AGG | 0.337305 | 4_1:-26198337 | Msa0542110:intron |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 4_1:-26198826 | Msa0542110:CDS |
| AAATGTGCTATTACAAGAAA+TGG | 0.345785 | 4_1:-26199020 | Msa0542110:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 4_1:-26195833 | Msa0542110:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 4_1:-26196028 | Msa0542110:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 4_1:+26195931 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 4_1:+26199250 | None:intergenic |
| ATGCGATTAGTCACGAGGTT+CGG | 0.358260 | 4_1:-26198571 | Msa0542110:CDS |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 4_1:-26197941 | Msa0542110:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 4_1:-26198749 | Msa0542110:CDS |
| AGGTCATCACCATACTTTAT+AGG | 0.370674 | 4_1:+26198800 | None:intergenic |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 4_1:+26198774 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 4_1:-26196126 | Msa0542110:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 4_1:+26196115 | None:intergenic |
| CCAACATTAGAGGTCCATTC+AGG | 0.380914 | 4_1:+26198629 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 4_1:-26195972 | Msa0542110:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 4_1:-26195826 | Msa0542110:CDS |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 4_1:-26197611 | Msa0542110:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 4_1:+26197525 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 4_1:-26197647 | Msa0542110:CDS |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 4_1:+26198053 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 4_1:+26198533 | None:intergenic |
| ATGATAGTAGCCAACATTAG+AGG | 0.411624 | 4_1:+26198619 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 4_1:-26198809 | Msa0542110:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 4_1:-26199208 | Msa0542110:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 4_1:-26195733 | Msa0542110:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 4_1:-26196192 | Msa0542110:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 4_1:+26196184 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 4_1:+26196880 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 4_1:-26195862 | Msa0542110:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.451171 | 4_1:-26195661 | Msa0542110:CDS |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 4_1:-26195752 | Msa0542110:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 4_1:+26198723 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 4_1:+26196060 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 4_1:-26199283 | Msa0542110:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 4_1:-26198643 | Msa0542110:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 4_1:-26198825 | Msa0542110:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 4_1:+26195988 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 4_1:-26195745 | Msa0542110:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 4_1:-26195760 | Msa0542110:CDS |
| TGGTGGAAATTACAATGGTA+TGG | 0.477511 | 4_1:-26199065 | Msa0542110:CDS |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 4_1:-26195871 | Msa0542110:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 4_1:-26197624 | Msa0542110:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 4_1:+26195759 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 4_1:-26199196 | Msa0542110:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 4_1:-26197751 | Msa0542110:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 4_1:-26197656 | Msa0542110:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 4_1:-26196073 | Msa0542110:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 4_1:-26198851 | Msa0542110:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 4_1:-26197703 | Msa0542110:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 4_1:-26198683 | Msa0542110:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 4_1:+26195778 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 4_1:+26195524 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 4_1:-26197555 | Msa0542110:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 4_1:-26199318 | Msa0542110:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 4_1:+26198850 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 4_1:-26196952 | Msa0542110:CDS |
| GCCTCCACGACTTCTTCCTC+AGG | 0.514345 | 4_1:-26198306 | Msa0542110:intron |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 4_1:+26198656 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 4_1:-26198904 | Msa0542110:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 4_1:-26195518 | Msa0542110:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 4_1:+26197896 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 4_1:-26195482 | Msa0542110:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 4_1:+26198665 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 4_1:-26198845 | Msa0542110:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 4_1:+26197537 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 4_1:+26195779 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 4_1:-26195512 | Msa0542110:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 4_1:-26195503 | Msa0542110:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 4_1:-26195896 | Msa0542110:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 4_1:-26198109 | Msa0542110:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 4_1:-26195820 | Msa0542110:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 4_1:-26196070 | Msa0542110:CDS |
| GATCACTTGTAGTTAGGATG+AGG | 0.549158 | 4_1:+26198780 | None:intergenic |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 4_1:-26197486 | Msa0542110:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 4_1:-26198848 | Msa0542110:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 4_1:-26196162 | Msa0542110:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 4_1:-26197814 | Msa0542110:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 4_1:+26197581 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 4_1:-26196165 | Msa0542110:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.565226 | 4_1:-26199317 | Msa0542110:CDS |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 4_1:+26195993 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 4_1:-26197995 | Msa0542110:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 4_1:-26195959 | Msa0542110:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.570990 | 4_1:-26198076 | Msa0542110:CDS |
| ATTCCATGTTGTTATAGTGA+AGG | 0.571178 | 4_1:-26198115 | Msa0542110:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 4_1:-26195513 | Msa0542110:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 4_1:-26197998 | Msa0542110:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.576033 | 4_1:+26198133 | None:intergenic |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 4_1:+26195744 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 4_1:-26196147 | Msa0542110:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 4_1:-26198138 | Msa0542110:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 4_1:-26195415 | Msa0542110:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 4_1:+26196068 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 4_1:+26199284 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 4_1:-26196201 | Msa0542110:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 4_1:-26198730 | Msa0542110:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 4_1:-26197655 | Msa0542110:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 4_1:-26195470 | Msa0542110:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 4_1:-26197894 | Msa0542110:CDS |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 4_1:+26195592 | None:intergenic |
| CCTGAATGGACCTCTAATGT+TGG | 0.597938 | 4_1:-26198629 | Msa0542110:CDS |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 4_1:-26196285 | Msa0542110:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 4_1:+26197746 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 4_1:-26195604 | Msa0542110:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 4_1:+26196249 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 4_1:+26198890 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 4_1:-26196272 | Msa0542110:CDS |
| ATATTCCTCAAAGGAGAGGG+GGG | 0.613156 | 4_1:-26199314 | Msa0542110:CDS |
| GGTGTCAAAGCTAACTATAG+AGG | 0.613947 | 4_1:-26195640 | Msa0542110:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 4_1:-26199323 | Msa0542110:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 4_1:+26196153 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 4_1:-26197956 | Msa0542110:CDS |
| GAAATTGGTGGAAATTACAA+TGG | 0.620723 | 4_1:-26199070 | Msa0542110:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 4_1:-26197950 | Msa0542110:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 4_1:+26195921 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 4_1:+26196154 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 4_1:+26197851 | None:intergenic |
| AATACCTGAGGAAGAAGTCG+TGG | 0.639662 | 4_1:+26198302 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 4_1:-26199204 | Msa0542110:CDS |
| TTTCCTTCACTATAACAACA+TGG | 0.644491 | 4_1:+26198112 | None:intergenic |
| TATTCCTCAAAGGAGAGGGG+GGG | 0.646481 | 4_1:-26199313 | Msa0542110:CDS |
| CAATATTCCTCAAAGGAGAG+GGG | 0.647996 | 4_1:-26199316 | Msa0542110:CDS |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 4_1:-26197960 | Msa0542110:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 4_1:+26197811 | None:intergenic |
| AATATTCCTCAAAGGAGAGG+GGG | 0.653283 | 4_1:-26199315 | Msa0542110:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 4_1:-26196037 | Msa0542110:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 4_1:+26196200 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 4_1:-26198576 | Msa0542110:CDS |
| GCGATTAGTCACGAGGTTCG+GGG | 0.680730 | 4_1:-26198569 | Msa0542110:CDS |
| ACCTGAGGAAGAAGTCGTGG+AGG | 0.684396 | 4_1:+26198305 | None:intergenic |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 4_1:-26195978 | Msa0542110:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 4_1:-26195412 | Msa0542110:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 4_1:-26197563 | Msa0542110:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 4_1:+26197883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr4_1:26197293-26197312 | None:intergenic | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr4_1:26197708-26197727 | Msa0542110:CDS | 15.0% |
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr4_1:26197741-26197760 | None:intergenic | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr4_1:26197748-26197767 | Msa0542110:CDS | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr4_1:26199171-26199190 | Msa0542110:CDS | 15.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr4_1:26195774-26195793 | Msa0542110:CDS | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr4_1:26196262-26196281 | None:intergenic | 20.0% |
| !! | GAAAATAGAAAAGTAGTATA+TGG | + | chr4_1:26196332-26196351 | None:intergenic | 20.0% |
| !! | AAATGATATATCAGAAATTC+AGG | + | chr4_1:26196456-26196475 | None:intergenic | 20.0% |
| !!! | TTTTATCTGAAATTCTTAAC+AGG | - | chr4_1:26196473-26196492 | Msa0542110:intron | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr4_1:26196722-26196741 | Msa0542110:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr4_1:26196726-26196745 | Msa0542110:intron | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr4_1:26197675-26197694 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr4_1:26197704-26197723 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr4_1:26197949-26197968 | Msa0542110:CDS | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr4_1:26197950-26197969 | Msa0542110:CDS | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr4_1:26198269-26198288 | None:intergenic | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr4_1:26198356-26198375 | None:intergenic | 20.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr4_1:26195615-26195634 | Msa0542110:CDS | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr4_1:26195642-26195661 | None:intergenic | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr4_1:26195639-26195658 | Msa0542110:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr4_1:26195642-26195661 | Msa0542110:CDS | 25.0% |
| !! | AAATGTGCTATTACAAGAAA+TGG | - | chr4_1:26195704-26195723 | Msa0542110:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr4_1:26195972-26195991 | None:intergenic | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr4_1:26196026-26196045 | Msa0542110:CDS | 25.0% |
| ! | AATAGAAAAGTAGTATATGG+TGG | + | chr4_1:26196329-26196348 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr4_1:26196674-26196693 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr4_1:26197100-26197119 | Msa0542110:intron | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr4_1:26197226-26197245 | None:intergenic | 25.0% |
| ! | GAAACATATGCTTCTTAAAA+TGG | + | chr4_1:26197323-26197342 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTATTGTGTATCA+TGG | - | chr4_1:26197339-26197358 | Msa0542110:intron | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr4_1:26197408-26197427 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr4_1:26197436-26197455 | Msa0542110:intron | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr4_1:26197501-26197520 | Msa0542110:CDS | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr4_1:26197502-26197521 | Msa0542110:CDS | 25.0% |
| ! | ATAGCAAATTAAGTGTGATA+TGG | + | chr4_1:26197626-26197645 | None:intergenic | 25.0% |
| !!! | TATCACACTTAATTTGCTAT+AGG | - | chr4_1:26197626-26197645 | Msa0542110:CDS | 25.0% |
| !!! | ATCACACTTAATTTGCTATA+GGG | - | chr4_1:26197627-26197646 | Msa0542110:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr4_1:26197869-26197888 | Msa0542110:CDS | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr4_1:26197870-26197889 | Msa0542110:CDS | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr4_1:26198071-26198090 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr4_1:26198275-26198294 | None:intergenic | 25.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr4_1:26198824-26198843 | Msa0542110:CDS | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr4_1:26198886-26198905 | Msa0542110:CDS | 25.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr4_1:26195453-26195472 | None:intergenic | 30.0% |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr4_1:26195477-26195496 | None:intergenic | 30.0% |
| CTTTCATCATTTGCATATGA+TGG | - | chr4_1:26195588-26195607 | Msa0542110:CDS | 30.0% | |
| GAAATTGGTGGAAATTACAA+TGG | - | chr4_1:26195654-26195673 | Msa0542110:CDS | 30.0% | |
| ! | CACATTTTCATCATAACTAG+TGG | + | chr4_1:26195691-26195710 | None:intergenic | 30.0% |
| TGATATCAAAATCACCTAGT+TGG | - | chr4_1:26195820-26195839 | Msa0542110:CDS | 30.0% | |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr4_1:26196025-26196044 | Msa0542110:CDS | 30.0% |
| TCAGAGTTCATATCAGATAT+AGG | + | chr4_1:26196194-26196213 | None:intergenic | 30.0% | |
| ATTCCATGTTGTTATAGTGA+AGG | - | chr4_1:26196609-26196628 | Msa0542110:intron | 30.0% | |
| TTTCCTTCACTATAACAACA+TGG | + | chr4_1:26196615-26196634 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr4_1:26196615-26196634 | Msa0542110:intron | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr4_1:26196729-26196748 | Msa0542110:intron | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr4_1:26196972-26196991 | Msa0542110:intron | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr4_1:26196973-26196992 | Msa0542110:intron | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr4_1:26197021-26197040 | Msa0542110:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr4_1:26197113-26197132 | Msa0542110:intron | 30.0% | |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr4_1:26197133-26197152 | Msa0542110:intron | 30.0% |
| GAAACGAACCTAAAAAATAG+TGG | - | chr4_1:26197215-26197234 | Msa0542110:intron | 30.0% | |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr4_1:26197388-26197407 | None:intergenic | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr4_1:26197389-26197408 | None:intergenic | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr4_1:26197510-26197529 | Msa0542110:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr4_1:26197514-26197533 | Msa0542110:CDS | 30.0% |
| TAACCAACAGAATGAAATCT+GGG | - | chr4_1:26197586-26197605 | Msa0542110:CDS | 30.0% | |
| !! | TCACACTTAATTTGCTATAG+GGG | - | chr4_1:26197628-26197647 | Msa0542110:CDS | 30.0% |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr4_1:26197736-26197755 | None:intergenic | 30.0% | |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr4_1:26197758-26197777 | Msa0542110:CDS | 30.0% |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr4_1:26197871-26197890 | Msa0542110:CDS | 30.0% | |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr4_1:26197959-26197978 | Msa0542110:CDS | 30.0% |
| TGCAACTCTTAAACTTATGA+TGG | + | chr4_1:26198023-26198042 | None:intergenic | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr4_1:26198098-26198117 | Msa0542110:CDS | 30.0% | |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr4_1:26198220-26198239 | None:intergenic | 30.0% |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr4_1:26198230-26198249 | Msa0542110:intron | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr4_1:26198310-26198329 | None:intergenic | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr4_1:26198612-26198631 | None:intergenic | 30.0% | |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr4_1:26198687-26198706 | Msa0542110:CDS | 30.0% |
| GTATTGAAGATTCAACAACA+TGG | - | chr4_1:26198746-26198765 | Msa0542110:CDS | 30.0% | |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr4_1:26198796-26198815 | None:intergenic | 30.0% |
| TTCAAGAACATAATCTACAG+AGG | + | chr4_1:26198806-26198825 | None:intergenic | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr4_1:26198823-26198842 | Msa0542110:CDS | 30.0% | |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr4_1:26198853-26198872 | Msa0542110:CDS | 30.0% |
| TTCAATGATTGAACTTGGTT+TGG | - | chr4_1:26198891-26198910 | Msa0542110:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr4_1:26199063-26199082 | Msa0542110:CDS | 30.0% | |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr4_1:26195516-26195535 | Msa0542110:CDS | 35.0% |
| TGGTGGAAATTACAATGGTA+TGG | - | chr4_1:26195659-26195678 | Msa0542110:CDS | 35.0% | |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr4_1:26195863-26195882 | Msa0542110:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr4_1:26195899-26195918 | Msa0542110:CDS | 35.0% | |
| AGGTCATCACCATACTTTAT+AGG | + | chr4_1:26195927-26195946 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr4_1:26195953-26195972 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr4_1:26195975-26195994 | Msa0542110:CDS | 35.0% | |
| ATGATAGTAGCCAACATTAG+AGG | + | chr4_1:26196108-26196127 | None:intergenic | 35.0% | |
| TACTGAACTTGTCACTACAA+AGG | - | chr4_1:26196231-26196250 | Msa0542110:CDS | 35.0% | |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr4_1:26196282-26196301 | Msa0542110:CDS | 35.0% |
| GAGCGAATACGAATTAAAGA+AGG | - | chr4_1:26196648-26196667 | Msa0542110:intron | 35.0% | |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr4_1:26196764-26196783 | Msa0542110:intron | 35.0% |
| TTCACATCGGTATAGAAGAA+TGG | + | chr4_1:26196831-26196850 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr4_1:26196830-26196849 | Msa0542110:intron | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr4_1:26196844-26196863 | None:intergenic | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr4_1:26196981-26197000 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr4_1:26197042-26197061 | Msa0542110:intron | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr4_1:26197069-26197088 | Msa0542110:intron | 35.0% | |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr4_1:26197132-26197151 | Msa0542110:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr4_1:26197134-26197153 | Msa0542110:intron | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr4_1:26197190-26197209 | None:intergenic | 35.0% |
| GTAACCAACAGAATGAAATC+TGG | - | chr4_1:26197585-26197604 | Msa0542110:CDS | 35.0% | |
| AACCAACAGAATGAAATCTG+GGG | - | chr4_1:26197587-26197606 | Msa0542110:CDS | 35.0% | |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr4_1:26197839-26197858 | Msa0542110:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr4_1:26197847-26197866 | None:intergenic | 35.0% |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr4_1:26197872-26197891 | Msa0542110:CDS | 35.0% | |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr4_1:26197983-26198002 | Msa0542110:CDS | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr4_1:26197984-26198003 | Msa0542110:CDS | 35.0% |
| GCTCTTATTCACAGATAAGT+GGG | + | chr4_1:26198198-26198217 | None:intergenic | 35.0% | |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr4_1:26198235-26198254 | None:intergenic | 35.0% |
| AACCAAGGATGTTATGAACT+TGG | + | chr4_1:26198295-26198314 | None:intergenic | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr4_1:26198348-26198367 | None:intergenic | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr4_1:26198349-26198368 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr4_1:26198430-26198449 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr4_1:26198439-26198458 | Msa0542110:intron | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr4_1:26198452-26198471 | Msa0542110:intron | 35.0% | |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr4_1:26198478-26198497 | None:intergenic | 35.0% |
| GGTTCAATCATCCAACAAAT+TGG | - | chr4_1:26198598-26198617 | Msa0542110:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr4_1:26198696-26198715 | Msa0542110:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr4_1:26198734-26198753 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr4_1:26198739-26198758 | None:intergenic | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr4_1:26198752-26198771 | Msa0542110:CDS | 35.0% | |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr4_1:26198898-26198917 | Msa0542110:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr4_1:26199035-26199054 | None:intergenic | 35.0% |
| AGTTGAAAACAACCTACAGA+TGG | + | chr4_1:26199135-26199154 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr4_1:26199203-26199222 | None:intergenic | 35.0% | |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr4_1:26199206-26199225 | Msa0542110:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr4_1:26199211-26199230 | Msa0542110:CDS | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr4_1:26199212-26199231 | Msa0542110:CDS | 35.0% |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr4_1:26199254-26199273 | Msa0542110:CDS | 35.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr4_1:26195401-26195420 | Msa0542110:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr4_1:26195406-26195425 | Msa0542110:CDS | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr4_1:26195407-26195426 | Msa0542110:CDS | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr4_1:26195408-26195427 | Msa0542110:CDS | 40.0% | |
| AATATTCCTCAAAGGAGAGG+GGG | - | chr4_1:26195409-26195428 | Msa0542110:CDS | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr4_1:26195443-26195462 | None:intergenic | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr4_1:26195441-26195460 | Msa0542110:CDS | 40.0% | |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr4_1:26195520-26195539 | Msa0542110:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr4_1:26195873-26195892 | Msa0542110:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr4_1:26195877-26195896 | None:intergenic | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr4_1:26195876-26195895 | Msa0542110:CDS | 40.0% |
| GAGGAATACTAGCACAAGTT+TGG | - | chr4_1:26195898-26195917 | Msa0542110:CDS | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr4_1:26195915-26195934 | Msa0542110:CDS | 40.0% | |
| GATCACTTGTAGTTAGGATG+AGG | + | chr4_1:26195947-26195966 | None:intergenic | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr4_1:26196041-26196060 | Msa0542110:CDS | 40.0% |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr4_1:26196081-26196100 | Msa0542110:CDS | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr4_1:26196768-26196787 | Msa0542110:intron | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr4_1:26196916-26196935 | None:intergenic | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr4_1:26197068-26197087 | Msa0542110:intron | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr4_1:26197161-26197180 | Msa0542110:intron | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr4_1:26197202-26197221 | None:intergenic | 40.0% | |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr4_1:26197238-26197257 | Msa0542110:intron | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr4_1:26197551-26197570 | None:intergenic | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr4_1:26197550-26197569 | Msa0542110:CDS | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr4_1:26197558-26197577 | None:intergenic | 40.0% | |
| GGTTACAAACTTACAACTCC+TGG | + | chr4_1:26197571-26197590 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr4_1:26197588-26197607 | Msa0542110:CDS | 40.0% | |
| !! | CTTAATTTGCTATAGGGGAG+TGG | - | chr4_1:26197633-26197652 | Msa0542110:CDS | 40.0% |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr4_1:26197772-26197791 | Msa0542110:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr4_1:26198199-26198218 | None:intergenic | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr4_1:26198290-26198309 | Msa0542110:intron | 40.0% | |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr4_1:26198648-26198667 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr4_1:26198649-26198668 | None:intergenic | 40.0% |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr4_1:26198651-26198670 | Msa0542110:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr4_1:26198667-26198686 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr4_1:26198828-26198847 | Msa0542110:CDS | 40.0% | |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr4_1:26198904-26198923 | Msa0542110:CDS | 40.0% |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr4_1:26198991-26199010 | Msa0542110:CDS | 40.0% | |
| GGTGTCAAAGCTAACTATAG+AGG | - | chr4_1:26199084-26199103 | Msa0542110:CDS | 40.0% | |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr4_1:26199120-26199139 | Msa0542110:CDS | 40.0% |
| GGTGAATGACTCAGATTTGA+AGG | - | chr4_1:26199242-26199261 | Msa0542110:CDS | 40.0% | |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr4_1:26199270-26199289 | Msa0542110:CDS | 40.0% |
| TTGCTCGTTCGCAATATACA+TGG | - | chr4_1:26199309-26199328 | Msa0542110:CDS | 40.0% | |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr4_1:26195410-26195429 | None:intergenic | 45.0% |
| ATATTCCTCAAAGGAGAGGG+GGG | - | chr4_1:26195410-26195429 | Msa0542110:CDS | 45.0% | |
| CTCTCATCAAGTGACCAACT+AGG | + | chr4_1:26195837-26195856 | None:intergenic | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr4_1:26195879-26195898 | Msa0542110:CDS | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr4_1:26196098-26196117 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr4_1:26196095-26196114 | Msa0542110:CDS | 45.0% | |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr4_1:26196148-26196167 | Msa0542110:CDS | 45.0% |
| ! | ATGCGATTAGTCACGAGGTT+CGG | - | chr4_1:26196153-26196172 | Msa0542110:CDS | 45.0% |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr4_1:26196286-26196305 | Msa0542110:CDS | 45.0% | |
| TTTCGCAGCGTGTGAATCTA+AGG | - | chr4_1:26196387-26196406 | Msa0542110:intron | 45.0% | |
| AATACCTGAGGAAGAAGTCG+TGG | + | chr4_1:26196425-26196444 | None:intergenic | 45.0% | |
| CAGGAATCTGCAAATACCTG+AGG | + | chr4_1:26196437-26196456 | None:intergenic | 45.0% | |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr4_1:26196586-26196605 | Msa0542110:intron | 45.0% |
| CATCATCTTGAGGAAGGACA+AGG | - | chr4_1:26196774-26196793 | Msa0542110:intron | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr4_1:26196783-26196802 | Msa0542110:intron | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr4_1:26196904-26196923 | Msa0542110:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr4_1:26197077-26197096 | Msa0542110:intron | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr4_1:26197368-26197387 | Msa0542110:intron | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr4_1:26197592-26197611 | None:intergenic | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr4_1:26197591-26197610 | Msa0542110:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr4_1:26197592-26197611 | Msa0542110:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr4_1:26197786-26197805 | Msa0542110:CDS | 45.0% | |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr4_1:26197796-26197815 | Msa0542110:CDS | 45.0% |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr4_1:26198131-26198150 | None:intergenic | 45.0% | |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr4_1:26198248-26198267 | None:intergenic | 45.0% |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr4_1:26198527-26198546 | None:intergenic | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr4_1:26198532-26198551 | Msa0542110:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr4_1:26198543-26198562 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr4_1:26198559-26198578 | Msa0542110:CDS | 45.0% | |
| AAATTTGACCCTCACACTGG+TGG | - | chr4_1:26198562-26198581 | Msa0542110:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr4_1:26198573-26198592 | None:intergenic | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr4_1:26198654-26198673 | Msa0542110:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr4_1:26198659-26198678 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr4_1:26198765-26198784 | Msa0542110:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr4_1:26198862-26198881 | Msa0542110:CDS | 45.0% |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr4_1:26198948-26198967 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr4_1:26198949-26198968 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr4_1:26199221-26199240 | Msa0542110:CDS | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr4_1:26199312-26199331 | Msa0542110:CDS | 45.0% | |
| TATTCCTCAAAGGAGAGGGG+GGG | - | chr4_1:26195411-26195430 | Msa0542110:CDS | 50.0% | |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr4_1:26195528-26195547 | Msa0542110:CDS | 50.0% |
| TAAACGACCTCGACACTTCG+CGG | + | chr4_1:26196004-26196023 | None:intergenic | 50.0% | |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr4_1:26196050-26196069 | Msa0542110:CDS | 50.0% |
| ! | TGCGATTAGTCACGAGGTTC+GGG | - | chr4_1:26196154-26196173 | Msa0542110:CDS | 50.0% |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr4_1:26196594-26196613 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr4_1:26196876-26196895 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr4_1:26196910-26196929 | Msa0542110:CDS | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr4_1:26197146-26197165 | None:intergenic | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr4_1:26197462-26197481 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr4_1:26197593-26197612 | Msa0542110:CDS | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr4_1:26197594-26197613 | Msa0542110:CDS | 50.0% | |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr4_1:26197992-26198011 | Msa0542110:CDS | 50.0% |
| CACAGATAAGTGGGCAGATG+CGG | + | chr4_1:26198189-26198208 | None:intergenic | 50.0% | |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr4_1:26198523-26198542 | Msa0542110:CDS | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr4_1:26198574-26198593 | None:intergenic | 50.0% | |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr4_1:26198574-26198593 | Msa0542110:CDS | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr4_1:26198577-26198596 | Msa0542110:CDS | 50.0% |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr4_1:26198964-26198983 | Msa0542110:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr4_1:26198968-26198987 | None:intergenic | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr4_1:26198972-26198991 | Msa0542110:CDS | 50.0% |
| TCCATTCACCATTGAGCCAG+AGG | + | chr4_1:26198983-26199002 | None:intergenic | 50.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr4_1:26196071-26196090 | None:intergenic | 55.0% | |
| ! | GCGATTAGTCACGAGGTTCG+GGG | - | chr4_1:26196155-26196174 | Msa0542110:CDS | 55.0% |
| ACCTGAGGAAGAAGTCGTGG+AGG | + | chr4_1:26196422-26196441 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr4_1:26197169-26197188 | Msa0542110:intron | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr4_1:26197476-26197495 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr4_1:26197595-26197614 | Msa0542110:CDS | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr4_1:26197641-26197660 | Msa0542110:CDS | 55.0% | |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr4_1:26197991-26198010 | Msa0542110:CDS | 55.0% |
| CCAACCCTCACACCCTCAAT+GGG | + | chr4_1:26197999-26198018 | None:intergenic | 55.0% | |
| ACCAACCCTCACACCCTCAA+TGG | + | chr4_1:26198000-26198019 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr4_1:26198979-26198998 | Msa0542110:CDS | 55.0% |
| GATTCCCCCCCTCTCCTTTG+AGG | + | chr4_1:26195418-26195437 | None:intergenic | 60.0% | |
| AGAGGGGGGGAATCAGCCTT+TGG | - | chr4_1:26195424-26195443 | Msa0542110:CDS | 60.0% | |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr4_1:26195994-26196013 | Msa0542110:CDS | 60.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr4_1:26196062-26196081 | None:intergenic | 60.0% | |
| GCCTCCACGACTTCTTCCTC+AGG | - | chr4_1:26196418-26196437 | Msa0542110:intron | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr4_1:26197471-26197490 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr4_1:26197996-26198015 | Msa0542110:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr4_1:26198180-26198199 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26195399 | 26199347 | 26195399 | ID=Msa0542110;Name=Msa0542110 |
| chr4_1 | mRNA | 26195399 | 26199347 | 26195399 | ID=Msa0542110-mRNA-1;Parent=Msa0542110;Name=Msa0542110-mRNA-1;_AED=0.03;_eAED=0.05;_QI=0|0.5|0.2|1|1|1|5|0|890 |
| chr4_1 | exon | 26198517 | 26199347 | 26198517 | ID=Msa0542110-mRNA-1:exon:7188;Parent=Msa0542110-mRNA-1 |
| chr4_1 | exon | 26198307 | 26198351 | 26198307 | ID=Msa0542110-mRNA-1:exon:7187;Parent=Msa0542110-mRNA-1 |
| chr4_1 | exon | 26197487 | 26198233 | 26197487 | ID=Msa0542110-mRNA-1:exon:7186;Parent=Msa0542110-mRNA-1 |
| chr4_1 | exon | 26196853 | 26196976 | 26196853 | ID=Msa0542110-mRNA-1:exon:7185;Parent=Msa0542110-mRNA-1 |
| chr4_1 | exon | 26195399 | 26196324 | 26195399 | ID=Msa0542110-mRNA-1:exon:7184;Parent=Msa0542110-mRNA-1 |
| chr4_1 | CDS | 26198517 | 26199347 | 26198517 | ID=Msa0542110-mRNA-1:cds;Parent=Msa0542110-mRNA-1 |
| chr4_1 | CDS | 26198307 | 26198351 | 26198307 | ID=Msa0542110-mRNA-1:cds;Parent=Msa0542110-mRNA-1 |
| chr4_1 | CDS | 26197487 | 26198233 | 26197487 | ID=Msa0542110-mRNA-1:cds;Parent=Msa0542110-mRNA-1 |
| chr4_1 | CDS | 26196853 | 26196976 | 26196853 | ID=Msa0542110-mRNA-1:cds;Parent=Msa0542110-mRNA-1 |
| chr4_1 | CDS | 26195399 | 26196324 | 26195399 | ID=Msa0542110-mRNA-1:cds;Parent=Msa0542110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
