Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542150 | XP_024636796.1 | 96.721 | 915 | 27 | 1 | 1 | 915 | 1 | 912 | 0.0 | 1845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542150 | sp|O22864|NLP8_ARATH | 49.180 | 976 | 382 | 26 | 1 | 909 | 1 | 929 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542150 | G7JDS3 | 96.721 | 915 | 27 | 1 | 1 | 915 | 1 | 912 | 0.0 | 1845 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0542150 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0542110 | Msa0542150 | 0.967619 | 1.577829e-127 | -8.615850e-47 |
| Msa0542150 | Msa0604980 | 0.905006 | 6.769650e-80 | -8.615850e-47 |
| Msa0542150 | Msa0685160 | 0.961945 | 2.705029e-120 | -8.615850e-47 |
| Msa0542150 | Msa0945460 | 0.918551 | 1.356096e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542150 | MtrunA17_Chr4g0033791 | 96.721 | 915 | 27 | 1 | 1 | 915 | 1 | 912 | 0.0 | 1845 |
| Msa0542150 | MtrunA17_Chr2g0329671 | 59.375 | 960 | 325 | 18 | 1 | 909 | 1 | 946 | 0.0 | 1064 |
| Msa0542150 | MtrunA17_Chr6g0472281 | 36.717 | 798 | 402 | 20 | 150 | 909 | 112 | 844 | 7.21e-138 | 432 |
| Msa0542150 | MtrunA17_Chr3g0143921 | 39.744 | 546 | 286 | 12 | 149 | 663 | 138 | 671 | 1.37e-116 | 378 |
| Msa0542150 | MtrunA17_Chr1g0203081 | 40.530 | 528 | 288 | 10 | 150 | 657 | 124 | 645 | 6.84e-113 | 369 |
| Msa0542150 | MtrunA17_Chr1g0203081 | 44.444 | 81 | 44 | 1 | 830 | 909 | 886 | 966 | 2.82e-15 | 80.9 |
| Msa0542150 | MtrunA17_Chr5g0448621 | 33.884 | 363 | 196 | 11 | 146 | 500 | 122 | 448 | 4.32e-46 | 179 |
| Msa0542150 | MtrunA17_Chr5g0448621 | 67.778 | 90 | 25 | 1 | 576 | 665 | 607 | 692 | 2.74e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542150 | AT2G43500.3 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.9 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.6 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.1 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.10 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.11 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.7 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.8 | 49.948 | 963 | 381 | 25 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| Msa0542150 | AT2G43500.5 | 49.283 | 976 | 381 | 26 | 1 | 909 | 1 | 929 | 0.0 | 780 |
| Msa0542150 | AT2G43500.4 | 49.283 | 976 | 381 | 26 | 1 | 909 | 1 | 929 | 0.0 | 780 |
| Msa0542150 | AT2G43500.2 | 49.180 | 976 | 382 | 26 | 1 | 909 | 1 | 929 | 0.0 | 777 |
| Msa0542150 | AT3G59580.2 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| Msa0542150 | AT3G59580.3 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| Msa0542150 | AT3G59580.1 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| Msa0542150 | AT1G64530.1 | 41.544 | 544 | 283 | 12 | 145 | 656 | 87 | 627 | 2.80e-119 | 383 |
| Msa0542150 | AT1G64530.1 | 45.679 | 81 | 42 | 2 | 830 | 909 | 744 | 823 | 1.82e-13 | 75.1 |
| Msa0542150 | AT1G20640.1 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 1.57e-118 | 381 |
| Msa0542150 | AT1G20640.3 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 1.57e-118 | 381 |
| Msa0542150 | AT1G20640.2 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 1.57e-118 | 381 |
| Msa0542150 | AT1G76350.2 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 2.33e-118 | 380 |
| Msa0542150 | AT1G76350.1 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 2.33e-118 | 380 |
| Msa0542150 | AT1G76350.4 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 2.33e-118 | 380 |
| Msa0542150 | AT1G76350.3 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 2.33e-118 | 380 |
| Msa0542150 | AT4G24020.1 | 39.685 | 572 | 299 | 14 | 115 | 656 | 107 | 662 | 1.95e-111 | 365 |
| Msa0542150 | AT4G24020.1 | 45.000 | 80 | 44 | 0 | 830 | 909 | 866 | 945 | 1.34e-16 | 85.5 |
| Msa0542150 | AT1G64530.2 | 42.702 | 459 | 229 | 12 | 222 | 656 | 24 | 472 | 2.18e-104 | 339 |
| Msa0542150 | AT1G64530.2 | 53.125 | 64 | 29 | 1 | 830 | 892 | 589 | 652 | 1.73e-13 | 75.1 |
| Msa0542150 | AT2G17150.1 | 37.329 | 584 | 289 | 14 | 143 | 663 | 117 | 686 | 2.83e-103 | 342 |
| Msa0542150 | AT2G17150.1 | 43.421 | 76 | 42 | 1 | 830 | 904 | 814 | 889 | 6.97e-12 | 70.1 |
| Msa0542150 | AT2G17150.6 | 37.329 | 584 | 289 | 14 | 143 | 663 | 117 | 686 | 2.83e-103 | 342 |
| Msa0542150 | AT2G17150.6 | 43.421 | 76 | 42 | 1 | 830 | 904 | 814 | 889 | 6.97e-12 | 70.1 |
| Msa0542150 | AT4G35270.2 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.45e-93 | 317 |
| Msa0542150 | AT4G35270.2 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 7.97e-11 | 66.6 |
| Msa0542150 | AT4G35270.1 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.45e-93 | 317 |
| Msa0542150 | AT4G35270.1 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 7.97e-11 | 66.6 |
| Msa0542150 | AT4G35270.3 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.45e-93 | 317 |
| Msa0542150 | AT4G35270.3 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 7.97e-11 | 66.6 |
| Msa0542150 | AT4G35270.4 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.45e-93 | 317 |
| Msa0542150 | AT4G35270.4 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 7.97e-11 | 66.6 |
| Msa0542150 | AT4G38340.2 | 36.207 | 522 | 261 | 14 | 145 | 656 | 39 | 498 | 1.66e-84 | 286 |
| Msa0542150 | AT4G38340.1 | 36.346 | 520 | 259 | 14 | 145 | 654 | 110 | 567 | 8.48e-84 | 286 |
| Msa0542150 | AT2G17150.5 | 33.712 | 528 | 273 | 13 | 143 | 607 | 117 | 630 | 8.25e-75 | 258 |
| Msa0542150 | AT2G17150.3 | 33.712 | 528 | 273 | 13 | 143 | 607 | 117 | 630 | 8.25e-75 | 258 |
| Msa0542150 | AT2G17150.2 | 33.586 | 527 | 272 | 14 | 143 | 607 | 117 | 627 | 1.25e-73 | 255 |
| Msa0542150 | AT4G24020.2 | 40.102 | 394 | 202 | 9 | 284 | 656 | 2 | 382 | 3.19e-72 | 252 |
| Msa0542150 | AT4G24020.2 | 45.000 | 80 | 44 | 0 | 830 | 909 | 586 | 665 | 1.01e-16 | 85.5 |
| Msa0542150 | AT2G17150.4 | 36.256 | 422 | 198 | 10 | 301 | 663 | 22 | 431 | 9.21e-65 | 231 |
| Msa0542150 | AT2G17150.4 | 43.421 | 76 | 42 | 1 | 830 | 904 | 559 | 634 | 4.62e-12 | 70.5 |
Find 152 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 4_1:-26231042 | Msa0542150:CDS |
| TGCGATTAGTCACGAGGTTC+GGG | 0.268648 | 4_1:-26230751 | Msa0542150:CDS |
| TCTAATTCTTTGTCAAAATT+AGG | 0.287200 | 4_1:+26230645 | None:intergenic |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.288875 | 4_1:+26231498 | None:intergenic |
| ATTTGTTTCTCATGCACTTC+AGG | 0.297246 | 4_1:-26230622 | Msa0542150:intron |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 4_1:-26229999 | Msa0542150:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 4_1:-26227730 | Msa0542150:CDS |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 4_1:-26230855 | Msa0542150:CDS |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 4_1:-26228327 | Msa0542150:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 4_1:-26230181 | Msa0542150:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 4_1:+26228474 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 4_1:-26231131 | Msa0542150:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 4_1:-26229931 | Msa0542150:CDS |
| CTTTCATCATTTGCATATGA+TGG | 0.328114 | 4_1:-26231317 | Msa0542150:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 4_1:-26231290 | Msa0542150:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 4_1:-26229861 | Msa0542150:CDS |
| TTTCGCAGCGTGTGAATCTA+AGG | 0.337305 | 4_1:-26230517 | Msa0542150:intron |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 4_1:-26231007 | Msa0542150:CDS |
| AAATGTGCTATTACAAGAAA+TGG | 0.345785 | 4_1:-26231201 | Msa0542150:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 4_1:-26228010 | Msa0542150:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 4_1:-26228205 | Msa0542150:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 4_1:+26228108 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 4_1:+26231431 | None:intergenic |
| ATGCGATTAGTCACGAGGTT+CGG | 0.358260 | 4_1:-26230752 | Msa0542150:CDS |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 4_1:-26230120 | Msa0542150:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 4_1:-26230930 | Msa0542150:CDS |
| AGGTCATCACCATACTTTAT+AGG | 0.370674 | 4_1:+26230981 | None:intergenic |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 4_1:+26230955 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 4_1:-26228303 | Msa0542150:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 4_1:+26228292 | None:intergenic |
| CCAACATTAGAGGTCCATTC+AGG | 0.380914 | 4_1:+26230810 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 4_1:-26228149 | Msa0542150:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 4_1:-26228003 | Msa0542150:CDS |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 4_1:-26229790 | Msa0542150:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 4_1:+26229704 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 4_1:-26229826 | Msa0542150:CDS |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 4_1:+26230232 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 4_1:+26230714 | None:intergenic |
| ATGATAGTAGCCAACATTAG+AGG | 0.411624 | 4_1:+26230800 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 4_1:-26230990 | Msa0542150:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 4_1:-26231389 | Msa0542150:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 4_1:-26227910 | Msa0542150:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 4_1:-26228369 | Msa0542150:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 4_1:+26228361 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 4_1:+26229057 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 4_1:-26228039 | Msa0542150:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.451171 | 4_1:-26227838 | Msa0542150:CDS |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 4_1:-26227929 | Msa0542150:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 4_1:+26230904 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 4_1:+26228237 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 4_1:-26231464 | Msa0542150:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 4_1:-26230824 | Msa0542150:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 4_1:-26231006 | Msa0542150:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 4_1:+26228165 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 4_1:-26227922 | Msa0542150:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 4_1:-26227937 | Msa0542150:CDS |
| TGGTGGAAATTACAATGGTA+TGG | 0.477511 | 4_1:-26231246 | Msa0542150:CDS |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 4_1:-26228048 | Msa0542150:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 4_1:-26229803 | Msa0542150:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 4_1:+26227936 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 4_1:-26231377 | Msa0542150:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 4_1:-26229930 | Msa0542150:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 4_1:-26229835 | Msa0542150:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 4_1:-26228250 | Msa0542150:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 4_1:-26231032 | Msa0542150:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 4_1:-26229882 | Msa0542150:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 4_1:-26230864 | Msa0542150:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 4_1:+26227955 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 4_1:+26227701 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 4_1:-26229734 | Msa0542150:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 4_1:-26231499 | Msa0542150:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 4_1:+26231031 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 4_1:-26229129 | Msa0542150:CDS |
| GCCTCCACGACTTCTTCCTC+AGG | 0.514345 | 4_1:-26230486 | Msa0542150:intron |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 4_1:+26230837 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 4_1:-26231085 | Msa0542150:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 4_1:-26227695 | Msa0542150:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 4_1:+26230075 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 4_1:-26227659 | Msa0542150:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 4_1:+26230846 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 4_1:-26231026 | Msa0542150:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 4_1:+26229716 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 4_1:+26227956 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 4_1:-26227689 | Msa0542150:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 4_1:-26227680 | Msa0542150:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 4_1:-26228073 | Msa0542150:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 4_1:-26230288 | Msa0542150:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 4_1:-26227997 | Msa0542150:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 4_1:-26228247 | Msa0542150:CDS |
| GATCACTTGTAGTTAGGATG+AGG | 0.549158 | 4_1:+26230961 | None:intergenic |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 4_1:-26229665 | Msa0542150:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 4_1:-26231029 | Msa0542150:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 4_1:-26228339 | Msa0542150:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 4_1:-26229993 | Msa0542150:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 4_1:+26229760 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 4_1:-26228342 | Msa0542150:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.565226 | 4_1:-26231498 | Msa0542150:CDS |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 4_1:+26228170 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 4_1:-26230174 | Msa0542150:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 4_1:-26228136 | Msa0542150:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.570990 | 4_1:-26230255 | Msa0542150:CDS |
| ATTCCATGTTGTTATAGTGA+AGG | 0.571178 | 4_1:-26230294 | Msa0542150:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 4_1:-26227690 | Msa0542150:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 4_1:-26230177 | Msa0542150:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.576033 | 4_1:+26230312 | None:intergenic |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 4_1:+26227921 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 4_1:-26228324 | Msa0542150:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 4_1:-26230317 | Msa0542150:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 4_1:-26227592 | Msa0542150:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 4_1:+26228245 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 4_1:+26231465 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 4_1:-26228378 | Msa0542150:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 4_1:-26230911 | Msa0542150:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 4_1:-26229834 | Msa0542150:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 4_1:-26227647 | Msa0542150:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 4_1:-26230073 | Msa0542150:CDS |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 4_1:+26227769 | None:intergenic |
| CCTGAATGGACCTCTAATGT+TGG | 0.597938 | 4_1:-26230810 | Msa0542150:CDS |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 4_1:-26228462 | Msa0542150:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 4_1:+26229925 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 4_1:-26227781 | Msa0542150:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 4_1:+26228426 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 4_1:+26231071 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 4_1:-26228449 | Msa0542150:CDS |
| ATATTCCTCAAAGGAGAGGG+GGG | 0.613156 | 4_1:-26231495 | Msa0542150:CDS |
| GGTGTCAAAGCTAACTATAG+AGG | 0.613947 | 4_1:-26227817 | Msa0542150:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 4_1:-26231504 | Msa0542150:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 4_1:+26228330 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 4_1:-26230135 | Msa0542150:CDS |
| GAAATTGGTGGAAATTACAA+TGG | 0.620723 | 4_1:-26231251 | Msa0542150:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 4_1:-26230129 | Msa0542150:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 4_1:+26228098 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 4_1:+26228331 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 4_1:+26230030 | None:intergenic |
| AATACCTGAGGAAGAAGTCG+TGG | 0.639662 | 4_1:+26230482 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 4_1:-26231385 | Msa0542150:CDS |
| TTTCCTTCACTATAACAACA+TGG | 0.644491 | 4_1:+26230291 | None:intergenic |
| TATTCCTCAAAGGAGAGGGG+GGG | 0.646481 | 4_1:-26231494 | Msa0542150:CDS |
| CAATATTCCTCAAAGGAGAG+GGG | 0.647996 | 4_1:-26231497 | Msa0542150:CDS |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 4_1:-26230139 | Msa0542150:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 4_1:+26229990 | None:intergenic |
| ACTTGAACTTGTCACTACAA+AGG | 0.651739 | 4_1:-26230673 | Msa0542150:CDS |
| AATATTCCTCAAAGGAGAGG+GGG | 0.653283 | 4_1:-26231496 | Msa0542150:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 4_1:-26228214 | Msa0542150:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 4_1:+26228377 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 4_1:-26230757 | Msa0542150:CDS |
| GCGATTAGTCACGAGGTTCG+GGG | 0.680730 | 4_1:-26230750 | Msa0542150:CDS |
| ACCTGAGGAAGAAGTCGTGG+AGG | 0.684396 | 4_1:+26230485 | None:intergenic |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 4_1:-26228155 | Msa0542150:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 4_1:-26227589 | Msa0542150:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 4_1:-26229742 | Msa0542150:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 4_1:+26230062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr4_1:26229474-26229493 | None:intergenic | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr4_1:26229889-26229908 | Msa0542150:CDS | 15.0% |
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr4_1:26229922-26229941 | None:intergenic | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr4_1:26229929-26229948 | Msa0542150:CDS | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr4_1:26231352-26231371 | Msa0542150:CDS | 15.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr4_1:26227951-26227970 | Msa0542150:CDS | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr4_1:26228440-26228459 | None:intergenic | 20.0% |
| !! | GAAAATAGAAAAGTAGTATA+TGG | + | chr4_1:26228510-26228529 | None:intergenic | 20.0% |
| !! | AAATGATATATCAGAAATTC+AGG | + | chr4_1:26228634-26228653 | None:intergenic | 20.0% |
| !!! | TTTTATCTGAAATTCTTAAC+AGG | - | chr4_1:26228651-26228670 | Msa0542150:intron | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr4_1:26228901-26228920 | Msa0542150:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr4_1:26228905-26228924 | Msa0542150:intron | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr4_1:26229856-26229875 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr4_1:26229885-26229904 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr4_1:26230130-26230149 | Msa0542150:CDS | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr4_1:26230131-26230150 | Msa0542150:CDS | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr4_1:26230450-26230469 | None:intergenic | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr4_1:26230537-26230556 | None:intergenic | 20.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr4_1:26227792-26227811 | Msa0542150:CDS | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr4_1:26227819-26227838 | None:intergenic | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr4_1:26227816-26227835 | Msa0542150:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr4_1:26227819-26227838 | Msa0542150:CDS | 25.0% |
| !! | AAATGTGCTATTACAAGAAA+TGG | - | chr4_1:26227881-26227900 | Msa0542150:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr4_1:26228149-26228168 | None:intergenic | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr4_1:26228203-26228222 | Msa0542150:CDS | 25.0% |
| ! | AATAGAAAAGTAGTATATGG+TGG | + | chr4_1:26228507-26228526 | None:intergenic | 25.0% |
| ! | TACACACTGCATAAAAAAAA+AGG | + | chr4_1:26228678-26228697 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr4_1:26228853-26228872 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr4_1:26229279-26229298 | Msa0542150:intron | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr4_1:26229405-26229424 | None:intergenic | 25.0% |
| ! | GAAACATATGCTTCTTAAAA+TGG | + | chr4_1:26229504-26229523 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTATTGTGTATCA+TGG | - | chr4_1:26229520-26229539 | Msa0542150:intron | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr4_1:26229589-26229608 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr4_1:26229617-26229636 | Msa0542150:intron | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr4_1:26229682-26229701 | Msa0542150:CDS | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr4_1:26229683-26229702 | Msa0542150:CDS | 25.0% |
| ! | ATAGCAAATTAAGTGTGATA+TGG | + | chr4_1:26229807-26229826 | None:intergenic | 25.0% |
| !!! | TATCACACTTAATTTGCTAT+AGG | - | chr4_1:26229807-26229826 | Msa0542150:CDS | 25.0% |
| !!! | ATCACACTTAATTTGCTATA+GGG | - | chr4_1:26229808-26229827 | Msa0542150:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr4_1:26230050-26230069 | Msa0542150:CDS | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr4_1:26230051-26230070 | Msa0542150:CDS | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr4_1:26230252-26230271 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr4_1:26230456-26230475 | None:intergenic | 25.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr4_1:26231005-26231024 | Msa0542150:CDS | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr4_1:26231067-26231086 | Msa0542150:CDS | 25.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr4_1:26227630-26227649 | None:intergenic | 30.0% |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr4_1:26227654-26227673 | None:intergenic | 30.0% |
| CTTTCATCATTTGCATATGA+TGG | - | chr4_1:26227765-26227784 | Msa0542150:CDS | 30.0% | |
| GAAATTGGTGGAAATTACAA+TGG | - | chr4_1:26227831-26227850 | Msa0542150:CDS | 30.0% | |
| ! | CACATTTTCATCATAACTAG+TGG | + | chr4_1:26227868-26227887 | None:intergenic | 30.0% |
| TGATATCAAAATCACCTAGT+TGG | - | chr4_1:26227997-26228016 | Msa0542150:CDS | 30.0% | |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr4_1:26228202-26228221 | Msa0542150:CDS | 30.0% |
| TCAGAGTTCATATCAGATAT+AGG | + | chr4_1:26228371-26228390 | None:intergenic | 30.0% | |
| ATTCCATGTTGTTATAGTGA+AGG | - | chr4_1:26228788-26228807 | Msa0542150:intron | 30.0% | |
| TTTCCTTCACTATAACAACA+TGG | + | chr4_1:26228794-26228813 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr4_1:26228794-26228813 | Msa0542150:intron | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr4_1:26228908-26228927 | Msa0542150:intron | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr4_1:26229151-26229170 | Msa0542150:intron | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr4_1:26229152-26229171 | Msa0542150:intron | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr4_1:26229200-26229219 | Msa0542150:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr4_1:26229292-26229311 | Msa0542150:intron | 30.0% | |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr4_1:26229312-26229331 | Msa0542150:intron | 30.0% |
| GAAACGAACCTAAAAAATAG+TGG | - | chr4_1:26229394-26229413 | Msa0542150:intron | 30.0% | |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr4_1:26229569-26229588 | None:intergenic | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr4_1:26229570-26229589 | None:intergenic | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr4_1:26229691-26229710 | Msa0542150:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr4_1:26229695-26229714 | Msa0542150:CDS | 30.0% |
| TAACCAACAGAATGAAATCT+GGG | - | chr4_1:26229767-26229786 | Msa0542150:CDS | 30.0% | |
| !! | TCACACTTAATTTGCTATAG+GGG | - | chr4_1:26229809-26229828 | Msa0542150:CDS | 30.0% |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr4_1:26229917-26229936 | None:intergenic | 30.0% | |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr4_1:26229939-26229958 | Msa0542150:CDS | 30.0% |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr4_1:26230052-26230071 | Msa0542150:CDS | 30.0% | |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr4_1:26230140-26230159 | Msa0542150:CDS | 30.0% |
| TGCAACTCTTAAACTTATGA+TGG | + | chr4_1:26230204-26230223 | None:intergenic | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr4_1:26230279-26230298 | Msa0542150:CDS | 30.0% | |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr4_1:26230401-26230420 | None:intergenic | 30.0% |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr4_1:26230411-26230430 | Msa0542150:intron | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr4_1:26230491-26230510 | None:intergenic | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr4_1:26230793-26230812 | None:intergenic | 30.0% | |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr4_1:26230868-26230887 | Msa0542150:CDS | 30.0% |
| GTATTGAAGATTCAACAACA+TGG | - | chr4_1:26230927-26230946 | Msa0542150:CDS | 30.0% | |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr4_1:26230977-26230996 | None:intergenic | 30.0% |
| TTCAAGAACATAATCTACAG+AGG | + | chr4_1:26230987-26231006 | None:intergenic | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr4_1:26231004-26231023 | Msa0542150:CDS | 30.0% | |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr4_1:26231034-26231053 | Msa0542150:CDS | 30.0% |
| TTCAATGATTGAACTTGGTT+TGG | - | chr4_1:26231072-26231091 | Msa0542150:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr4_1:26231244-26231263 | Msa0542150:CDS | 30.0% | |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr4_1:26227693-26227712 | Msa0542150:CDS | 35.0% |
| TGGTGGAAATTACAATGGTA+TGG | - | chr4_1:26227836-26227855 | Msa0542150:CDS | 35.0% | |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr4_1:26228040-26228059 | Msa0542150:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr4_1:26228076-26228095 | Msa0542150:CDS | 35.0% | |
| AGGTCATCACCATACTTTAT+AGG | + | chr4_1:26228104-26228123 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr4_1:26228130-26228149 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr4_1:26228152-26228171 | Msa0542150:CDS | 35.0% | |
| ATGATAGTAGCCAACATTAG+AGG | + | chr4_1:26228285-26228304 | None:intergenic | 35.0% | |
| ACTTGAACTTGTCACTACAA+AGG | - | chr4_1:26228409-26228428 | Msa0542150:CDS | 35.0% | |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr4_1:26228460-26228479 | Msa0542150:CDS | 35.0% |
| GAGCGAATACGAATTAAAGA+AGG | - | chr4_1:26228827-26228846 | Msa0542150:intron | 35.0% | |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr4_1:26228943-26228962 | Msa0542150:intron | 35.0% |
| TTCACATCGGTATAGAAGAA+TGG | + | chr4_1:26229010-26229029 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr4_1:26229009-26229028 | Msa0542150:intron | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr4_1:26229023-26229042 | None:intergenic | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr4_1:26229160-26229179 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr4_1:26229221-26229240 | Msa0542150:intron | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr4_1:26229248-26229267 | Msa0542150:intron | 35.0% | |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr4_1:26229311-26229330 | Msa0542150:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr4_1:26229313-26229332 | Msa0542150:intron | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr4_1:26229369-26229388 | None:intergenic | 35.0% |
| GTAACCAACAGAATGAAATC+TGG | - | chr4_1:26229766-26229785 | Msa0542150:CDS | 35.0% | |
| AACCAACAGAATGAAATCTG+GGG | - | chr4_1:26229768-26229787 | Msa0542150:CDS | 35.0% | |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr4_1:26230020-26230039 | Msa0542150:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr4_1:26230028-26230047 | None:intergenic | 35.0% |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr4_1:26230053-26230072 | Msa0542150:CDS | 35.0% | |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr4_1:26230164-26230183 | Msa0542150:CDS | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr4_1:26230165-26230184 | Msa0542150:CDS | 35.0% |
| GCTCTTATTCACAGATAAGT+GGG | + | chr4_1:26230379-26230398 | None:intergenic | 35.0% | |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr4_1:26230416-26230435 | None:intergenic | 35.0% |
| AACCAAGGATGTTATGAACT+TGG | + | chr4_1:26230476-26230495 | None:intergenic | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr4_1:26230529-26230548 | None:intergenic | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr4_1:26230530-26230549 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr4_1:26230611-26230630 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr4_1:26230620-26230639 | Msa0542150:intron | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr4_1:26230633-26230652 | Msa0542150:CDS | 35.0% | |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr4_1:26230659-26230678 | None:intergenic | 35.0% |
| GGTTCAATCATCCAACAAAT+TGG | - | chr4_1:26230779-26230798 | Msa0542150:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr4_1:26230877-26230896 | Msa0542150:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr4_1:26230915-26230934 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr4_1:26230920-26230939 | None:intergenic | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr4_1:26230933-26230952 | Msa0542150:CDS | 35.0% | |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr4_1:26231079-26231098 | Msa0542150:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr4_1:26231216-26231235 | None:intergenic | 35.0% |
| AGTTGAAAACAACCTACAGA+TGG | + | chr4_1:26231316-26231335 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr4_1:26231384-26231403 | None:intergenic | 35.0% | |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr4_1:26231387-26231406 | Msa0542150:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr4_1:26231392-26231411 | Msa0542150:CDS | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr4_1:26231393-26231412 | Msa0542150:CDS | 35.0% |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr4_1:26231435-26231454 | Msa0542150:CDS | 35.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr4_1:26227578-26227597 | Msa0542150:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr4_1:26227583-26227602 | Msa0542150:CDS | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr4_1:26227584-26227603 | Msa0542150:CDS | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr4_1:26227585-26227604 | Msa0542150:CDS | 40.0% | |
| AATATTCCTCAAAGGAGAGG+GGG | - | chr4_1:26227586-26227605 | Msa0542150:CDS | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr4_1:26227620-26227639 | None:intergenic | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr4_1:26227618-26227637 | Msa0542150:CDS | 40.0% | |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr4_1:26227697-26227716 | Msa0542150:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr4_1:26228050-26228069 | Msa0542150:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr4_1:26228054-26228073 | None:intergenic | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr4_1:26228053-26228072 | Msa0542150:CDS | 40.0% |
| GAGGAATACTAGCACAAGTT+TGG | - | chr4_1:26228075-26228094 | Msa0542150:CDS | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr4_1:26228092-26228111 | Msa0542150:CDS | 40.0% | |
| GATCACTTGTAGTTAGGATG+AGG | + | chr4_1:26228124-26228143 | None:intergenic | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr4_1:26228218-26228237 | Msa0542150:CDS | 40.0% |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr4_1:26228258-26228277 | Msa0542150:CDS | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr4_1:26228947-26228966 | Msa0542150:intron | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr4_1:26229095-26229114 | None:intergenic | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr4_1:26229247-26229266 | Msa0542150:intron | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr4_1:26229340-26229359 | Msa0542150:intron | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr4_1:26229381-26229400 | None:intergenic | 40.0% | |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr4_1:26229417-26229436 | Msa0542150:intron | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr4_1:26229732-26229751 | None:intergenic | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr4_1:26229731-26229750 | Msa0542150:CDS | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr4_1:26229739-26229758 | None:intergenic | 40.0% | |
| GGTTACAAACTTACAACTCC+TGG | + | chr4_1:26229752-26229771 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr4_1:26229769-26229788 | Msa0542150:CDS | 40.0% | |
| !! | CTTAATTTGCTATAGGGGAG+TGG | - | chr4_1:26229814-26229833 | Msa0542150:CDS | 40.0% |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr4_1:26229953-26229972 | Msa0542150:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr4_1:26230380-26230399 | None:intergenic | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr4_1:26230471-26230490 | Msa0542150:intron | 40.0% | |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr4_1:26230829-26230848 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr4_1:26230830-26230849 | None:intergenic | 40.0% |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr4_1:26230832-26230851 | Msa0542150:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr4_1:26230848-26230867 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr4_1:26231009-26231028 | Msa0542150:CDS | 40.0% | |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr4_1:26231085-26231104 | Msa0542150:CDS | 40.0% |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr4_1:26231172-26231191 | Msa0542150:CDS | 40.0% | |
| GGTGTCAAAGCTAACTATAG+AGG | - | chr4_1:26231265-26231284 | Msa0542150:CDS | 40.0% | |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr4_1:26231301-26231320 | Msa0542150:CDS | 40.0% |
| GGTGAATGACTCAGATTTGA+AGG | - | chr4_1:26231423-26231442 | Msa0542150:CDS | 40.0% | |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr4_1:26231451-26231470 | Msa0542150:CDS | 40.0% |
| TTGCTCGTTCGCAATATACA+TGG | - | chr4_1:26231490-26231509 | Msa0542150:CDS | 40.0% | |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr4_1:26227587-26227606 | None:intergenic | 45.0% |
| ATATTCCTCAAAGGAGAGGG+GGG | - | chr4_1:26227587-26227606 | Msa0542150:CDS | 45.0% | |
| CTCTCATCAAGTGACCAACT+AGG | + | chr4_1:26228014-26228033 | None:intergenic | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr4_1:26228056-26228075 | Msa0542150:CDS | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr4_1:26228275-26228294 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr4_1:26228272-26228291 | Msa0542150:CDS | 45.0% | |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr4_1:26228325-26228344 | Msa0542150:CDS | 45.0% |
| ! | ATGCGATTAGTCACGAGGTT+CGG | - | chr4_1:26228330-26228349 | Msa0542150:CDS | 45.0% |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr4_1:26228464-26228483 | Msa0542150:CDS | 45.0% | |
| TTTCGCAGCGTGTGAATCTA+AGG | - | chr4_1:26228565-26228584 | Msa0542150:intron | 45.0% | |
| AATACCTGAGGAAGAAGTCG+TGG | + | chr4_1:26228603-26228622 | None:intergenic | 45.0% | |
| CAGGAATCTGCAAATACCTG+AGG | + | chr4_1:26228615-26228634 | None:intergenic | 45.0% | |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr4_1:26228765-26228784 | Msa0542150:intron | 45.0% |
| CATCATCTTGAGGAAGGACA+AGG | - | chr4_1:26228953-26228972 | Msa0542150:intron | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr4_1:26228962-26228981 | Msa0542150:intron | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr4_1:26229083-26229102 | Msa0542150:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr4_1:26229256-26229275 | Msa0542150:intron | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr4_1:26229549-26229568 | Msa0542150:intron | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr4_1:26229773-26229792 | None:intergenic | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr4_1:26229772-26229791 | Msa0542150:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr4_1:26229773-26229792 | Msa0542150:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr4_1:26229967-26229986 | Msa0542150:CDS | 45.0% | |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr4_1:26229977-26229996 | Msa0542150:CDS | 45.0% |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr4_1:26230312-26230331 | None:intergenic | 45.0% | |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr4_1:26230429-26230448 | None:intergenic | 45.0% |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr4_1:26230708-26230727 | None:intergenic | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr4_1:26230713-26230732 | Msa0542150:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr4_1:26230724-26230743 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr4_1:26230740-26230759 | Msa0542150:CDS | 45.0% | |
| AAATTTGACCCTCACACTGG+TGG | - | chr4_1:26230743-26230762 | Msa0542150:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr4_1:26230754-26230773 | None:intergenic | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr4_1:26230835-26230854 | Msa0542150:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr4_1:26230840-26230859 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr4_1:26230946-26230965 | Msa0542150:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr4_1:26231043-26231062 | Msa0542150:CDS | 45.0% |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr4_1:26231129-26231148 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr4_1:26231130-26231149 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr4_1:26231402-26231421 | Msa0542150:CDS | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr4_1:26231493-26231512 | Msa0542150:CDS | 45.0% | |
| TATTCCTCAAAGGAGAGGGG+GGG | - | chr4_1:26227588-26227607 | Msa0542150:CDS | 50.0% | |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr4_1:26227705-26227724 | Msa0542150:CDS | 50.0% |
| TAAACGACCTCGACACTTCG+CGG | + | chr4_1:26228181-26228200 | None:intergenic | 50.0% | |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr4_1:26228227-26228246 | Msa0542150:CDS | 50.0% |
| ! | TGCGATTAGTCACGAGGTTC+GGG | - | chr4_1:26228331-26228350 | Msa0542150:CDS | 50.0% |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr4_1:26228773-26228792 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr4_1:26229055-26229074 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr4_1:26229089-26229108 | Msa0542150:CDS | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr4_1:26229325-26229344 | None:intergenic | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr4_1:26229643-26229662 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr4_1:26229774-26229793 | Msa0542150:CDS | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr4_1:26229775-26229794 | Msa0542150:CDS | 50.0% | |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr4_1:26230173-26230192 | Msa0542150:CDS | 50.0% |
| CACAGATAAGTGGGCAGATG+CGG | + | chr4_1:26230370-26230389 | None:intergenic | 50.0% | |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr4_1:26230704-26230723 | Msa0542150:CDS | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr4_1:26230755-26230774 | None:intergenic | 50.0% | |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr4_1:26230755-26230774 | Msa0542150:CDS | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr4_1:26230758-26230777 | Msa0542150:CDS | 50.0% |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr4_1:26231145-26231164 | Msa0542150:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr4_1:26231149-26231168 | None:intergenic | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr4_1:26231153-26231172 | Msa0542150:CDS | 50.0% |
| TCCATTCACCATTGAGCCAG+AGG | + | chr4_1:26231164-26231183 | None:intergenic | 50.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr4_1:26228248-26228267 | None:intergenic | 55.0% | |
| ! | GCGATTAGTCACGAGGTTCG+GGG | - | chr4_1:26228332-26228351 | Msa0542150:CDS | 55.0% |
| ACCTGAGGAAGAAGTCGTGG+AGG | + | chr4_1:26228600-26228619 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr4_1:26229348-26229367 | Msa0542150:intron | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr4_1:26229657-26229676 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr4_1:26229776-26229795 | Msa0542150:CDS | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr4_1:26229822-26229841 | Msa0542150:CDS | 55.0% | |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr4_1:26230172-26230191 | Msa0542150:CDS | 55.0% |
| CCAACCCTCACACCCTCAAT+GGG | + | chr4_1:26230180-26230199 | None:intergenic | 55.0% | |
| ACCAACCCTCACACCCTCAA+TGG | + | chr4_1:26230181-26230200 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr4_1:26231160-26231179 | Msa0542150:CDS | 55.0% |
| GATTCCCCCCCTCTCCTTTG+AGG | + | chr4_1:26227595-26227614 | None:intergenic | 60.0% | |
| AGAGGGGGGGAATCAGCCTT+TGG | - | chr4_1:26227601-26227620 | Msa0542150:CDS | 60.0% | |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr4_1:26228171-26228190 | Msa0542150:CDS | 60.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr4_1:26228239-26228258 | None:intergenic | 60.0% | |
| GCCTCCACGACTTCTTCCTC+AGG | - | chr4_1:26228596-26228615 | Msa0542150:intron | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr4_1:26229652-26229671 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr4_1:26230177-26230196 | Msa0542150:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr4_1:26230361-26230380 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26227576 | 26231528 | 26227576 | ID=Msa0542150;Name=Msa0542150 |
| chr4_1 | mRNA | 26227576 | 26231528 | 26227576 | ID=Msa0542150-mRNA-1;Parent=Msa0542150;Name=Msa0542150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.2|1|1|1|5|0|915 |
| chr4_1 | exon | 26230623 | 26231528 | 26230623 | ID=Msa0542150-mRNA-1:exon:7183;Parent=Msa0542150-mRNA-1 |
| chr4_1 | exon | 26230487 | 26230531 | 26230487 | ID=Msa0542150-mRNA-1:exon:7182;Parent=Msa0542150-mRNA-1 |
| chr4_1 | exon | 26229666 | 26230412 | 26229666 | ID=Msa0542150-mRNA-1:exon:7181;Parent=Msa0542150-mRNA-1 |
| chr4_1 | exon | 26229030 | 26229153 | 26229030 | ID=Msa0542150-mRNA-1:exon:7180;Parent=Msa0542150-mRNA-1 |
| chr4_1 | exon | 26227576 | 26228501 | 26227576 | ID=Msa0542150-mRNA-1:exon:7179;Parent=Msa0542150-mRNA-1 |
| chr4_1 | CDS | 26230623 | 26231528 | 26230623 | ID=Msa0542150-mRNA-1:cds;Parent=Msa0542150-mRNA-1 |
| chr4_1 | CDS | 26230487 | 26230531 | 26230487 | ID=Msa0542150-mRNA-1:cds;Parent=Msa0542150-mRNA-1 |
| chr4_1 | CDS | 26229666 | 26230412 | 26229666 | ID=Msa0542150-mRNA-1:cds;Parent=Msa0542150-mRNA-1 |
| chr4_1 | CDS | 26229030 | 26229153 | 26229030 | ID=Msa0542150-mRNA-1:cds;Parent=Msa0542150-mRNA-1 |
| chr4_1 | CDS | 26227576 | 26228501 | 26227576 | ID=Msa0542150-mRNA-1:cds;Parent=Msa0542150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
