Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945460 | XP_024636796.1 | 96.930 | 912 | 24 | 1 | 1 | 908 | 1 | 912 | 0.0 | 1845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945460 | sp|O22864|NLP8_ARATH | 49.121 | 967 | 389 | 26 | 1 | 902 | 1 | 929 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0945460 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604980 | Msa0945460 | 0.875741 | 2.426406e-68 | -8.615850e-47 |
| Msa0685160 | Msa0945460 | 0.896035 | 5.424928e-76 | -8.615850e-47 |
| Msa0542110 | Msa0945460 | 0.890539 | 8.991846e-74 | -8.615850e-47 |
| Msa0542150 | Msa0945460 | 0.918551 | 1.356096e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945460 | MtrunA17_Chr4g0033791 | 96.930 | 912 | 24 | 1 | 1 | 908 | 1 | 912 | 0.0 | 1845 |
| Msa0945460 | MtrunA17_Chr2g0329671 | 59.375 | 960 | 318 | 19 | 1 | 902 | 1 | 946 | 0.0 | 1057 |
| Msa0945460 | MtrunA17_Chr6g0472281 | 36.717 | 798 | 402 | 20 | 143 | 902 | 112 | 844 | 8.51e-138 | 432 |
| Msa0945460 | MtrunA17_Chr3g0143921 | 39.744 | 546 | 286 | 12 | 142 | 656 | 138 | 671 | 1.65e-116 | 377 |
| Msa0945460 | MtrunA17_Chr1g0203081 | 40.530 | 528 | 288 | 10 | 143 | 650 | 124 | 645 | 4.41e-113 | 370 |
| Msa0945460 | MtrunA17_Chr1g0203081 | 44.444 | 81 | 44 | 1 | 823 | 902 | 886 | 966 | 2.65e-15 | 80.9 |
| Msa0945460 | MtrunA17_Chr5g0448621 | 33.884 | 363 | 196 | 11 | 139 | 493 | 122 | 448 | 4.24e-46 | 179 |
| Msa0945460 | MtrunA17_Chr5g0448621 | 67.778 | 90 | 25 | 1 | 569 | 658 | 607 | 692 | 3.03e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945460 | AT2G43500.3 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.9 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.6 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.1 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.10 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.11 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.7 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.8 | 49.895 | 954 | 388 | 25 | 1 | 902 | 1 | 916 | 0.0 | 786 |
| Msa0945460 | AT2G43500.5 | 49.224 | 967 | 388 | 26 | 1 | 902 | 1 | 929 | 0.0 | 776 |
| Msa0945460 | AT2G43500.4 | 49.224 | 967 | 388 | 26 | 1 | 902 | 1 | 929 | 0.0 | 776 |
| Msa0945460 | AT2G43500.2 | 49.121 | 967 | 389 | 26 | 1 | 902 | 1 | 929 | 0.0 | 775 |
| Msa0945460 | AT3G59580.2 | 50.274 | 913 | 365 | 24 | 19 | 902 | 23 | 875 | 0.0 | 751 |
| Msa0945460 | AT3G59580.3 | 50.274 | 913 | 365 | 24 | 19 | 902 | 23 | 875 | 0.0 | 751 |
| Msa0945460 | AT3G59580.1 | 50.274 | 913 | 365 | 24 | 19 | 902 | 23 | 875 | 0.0 | 751 |
| Msa0945460 | AT1G64530.1 | 41.544 | 544 | 283 | 12 | 138 | 649 | 87 | 627 | 2.39e-119 | 383 |
| Msa0945460 | AT1G64530.1 | 45.679 | 81 | 42 | 2 | 823 | 902 | 744 | 823 | 1.88e-13 | 75.1 |
| Msa0945460 | AT1G20640.1 | 41.486 | 552 | 267 | 12 | 142 | 658 | 104 | 634 | 1.90e-118 | 381 |
| Msa0945460 | AT1G20640.3 | 41.486 | 552 | 267 | 12 | 142 | 658 | 104 | 634 | 1.90e-118 | 381 |
| Msa0945460 | AT1G20640.2 | 41.486 | 552 | 267 | 12 | 142 | 658 | 104 | 634 | 1.90e-118 | 381 |
| Msa0945460 | AT1G76350.2 | 41.887 | 530 | 266 | 12 | 141 | 645 | 104 | 616 | 2.91e-118 | 379 |
| Msa0945460 | AT1G76350.1 | 41.887 | 530 | 266 | 12 | 141 | 645 | 104 | 616 | 2.91e-118 | 379 |
| Msa0945460 | AT1G76350.4 | 41.887 | 530 | 266 | 12 | 141 | 645 | 104 | 616 | 2.91e-118 | 379 |
| Msa0945460 | AT1G76350.3 | 41.887 | 530 | 266 | 12 | 141 | 645 | 104 | 616 | 2.91e-118 | 379 |
| Msa0945460 | AT4G24020.1 | 39.685 | 572 | 299 | 14 | 108 | 649 | 107 | 662 | 6.42e-111 | 364 |
| Msa0945460 | AT4G24020.1 | 45.000 | 80 | 44 | 0 | 823 | 902 | 866 | 945 | 1.33e-16 | 85.5 |
| Msa0945460 | AT1G64530.2 | 42.702 | 459 | 229 | 12 | 215 | 649 | 24 | 472 | 2.24e-104 | 339 |
| Msa0945460 | AT1G64530.2 | 53.125 | 64 | 29 | 1 | 823 | 885 | 589 | 652 | 1.69e-13 | 75.1 |
| Msa0945460 | AT2G17150.1 | 37.329 | 584 | 289 | 14 | 136 | 656 | 117 | 686 | 4.51e-103 | 342 |
| Msa0945460 | AT2G17150.1 | 43.421 | 76 | 42 | 1 | 823 | 897 | 814 | 889 | 7.64e-12 | 70.1 |
| Msa0945460 | AT2G17150.6 | 37.329 | 584 | 289 | 14 | 136 | 656 | 117 | 686 | 4.51e-103 | 342 |
| Msa0945460 | AT2G17150.6 | 43.421 | 76 | 42 | 1 | 823 | 897 | 814 | 889 | 7.64e-12 | 70.1 |
| Msa0945460 | AT4G35270.2 | 35.452 | 598 | 292 | 19 | 136 | 656 | 146 | 726 | 1.89e-93 | 317 |
| Msa0945460 | AT4G35270.2 | 38.462 | 78 | 47 | 1 | 823 | 899 | 865 | 942 | 7.82e-11 | 66.6 |
| Msa0945460 | AT4G35270.1 | 35.452 | 598 | 292 | 19 | 136 | 656 | 146 | 726 | 1.89e-93 | 317 |
| Msa0945460 | AT4G35270.1 | 38.462 | 78 | 47 | 1 | 823 | 899 | 865 | 942 | 7.82e-11 | 66.6 |
| Msa0945460 | AT4G35270.3 | 35.452 | 598 | 292 | 19 | 136 | 656 | 146 | 726 | 1.89e-93 | 317 |
| Msa0945460 | AT4G35270.3 | 38.462 | 78 | 47 | 1 | 823 | 899 | 865 | 942 | 7.82e-11 | 66.6 |
| Msa0945460 | AT4G35270.4 | 35.452 | 598 | 292 | 19 | 136 | 656 | 146 | 726 | 1.89e-93 | 317 |
| Msa0945460 | AT4G35270.4 | 38.462 | 78 | 47 | 1 | 823 | 899 | 865 | 942 | 7.82e-11 | 66.6 |
| Msa0945460 | AT4G38340.2 | 36.207 | 522 | 261 | 14 | 138 | 649 | 39 | 498 | 1.02e-84 | 286 |
| Msa0945460 | AT4G38340.1 | 36.346 | 520 | 259 | 14 | 138 | 647 | 110 | 567 | 6.16e-84 | 286 |
| Msa0945460 | AT2G17150.5 | 33.712 | 528 | 273 | 13 | 136 | 600 | 117 | 630 | 6.97e-75 | 259 |
| Msa0945460 | AT2G17150.3 | 33.712 | 528 | 273 | 13 | 136 | 600 | 117 | 630 | 6.97e-75 | 259 |
| Msa0945460 | AT2G17150.2 | 33.586 | 527 | 272 | 14 | 136 | 600 | 117 | 627 | 1.12e-73 | 255 |
| Msa0945460 | AT4G24020.2 | 40.102 | 394 | 202 | 9 | 277 | 649 | 2 | 382 | 2.65e-72 | 252 |
| Msa0945460 | AT4G24020.2 | 45.000 | 80 | 44 | 0 | 823 | 902 | 586 | 665 | 1.00e-16 | 85.5 |
| Msa0945460 | AT2G17150.4 | 36.256 | 422 | 198 | 10 | 294 | 656 | 22 | 431 | 8.79e-65 | 230 |
| Msa0945460 | AT2G17150.4 | 43.421 | 76 | 42 | 1 | 823 | 897 | 559 | 634 | 4.81e-12 | 70.5 |
Find 151 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 6_3:-24246759 | Msa0945460:CDS |
| TGCGATTAGTCACGAGGTTC+GGG | 0.268648 | 6_3:-24246468 | Msa0945460:CDS |
| TCTAATTCTTTGTCAAAATT+AGG | 0.287200 | 6_3:+24246362 | None:intergenic |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.288875 | 6_3:+24247194 | None:intergenic |
| ATTTGTTTCTCATGCACTTC+AGG | 0.297246 | 6_3:-24246339 | Msa0945460:intron |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 6_3:-24245717 | Msa0945460:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 6_3:-24243456 | Msa0945460:CDS |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 6_3:-24246572 | Msa0945460:CDS |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 6_3:-24244053 | Msa0945460:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 6_3:-24245899 | Msa0945460:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 6_3:+24244200 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 6_3:-24246848 | Msa0945460:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 6_3:-24245649 | Msa0945460:CDS |
| CTTTCATCATTTGCATATGA+TGG | 0.328114 | 6_3:-24247013 | Msa0945460:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 6_3:-24246986 | Msa0945460:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 6_3:-24245579 | Msa0945460:CDS |
| TTTCGCAGCGTGTGAATCTA+AGG | 0.337305 | 6_3:-24246234 | Msa0945460:intron |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 6_3:-24246724 | Msa0945460:CDS |
| AAAAGTGCTATTACAAGAAA+TGG | 0.346139 | 6_3:-24246918 | Msa0945460:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 6_3:-24243736 | Msa0945460:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 6_3:-24243931 | Msa0945460:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 6_3:+24243834 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 6_3:+24247127 | None:intergenic |
| ATGCGATTAGTCACGAGGTT+CGG | 0.358260 | 6_3:-24246469 | Msa0945460:CDS |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 6_3:-24245838 | Msa0945460:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 6_3:-24246647 | Msa0945460:CDS |
| AGGTCATCACCATACTTTAT+AGG | 0.370674 | 6_3:+24246698 | None:intergenic |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 6_3:+24246672 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 6_3:-24244029 | Msa0945460:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 6_3:+24244018 | None:intergenic |
| CCAACATTAGAGGTCCATTC+AGG | 0.380914 | 6_3:+24246527 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 6_3:-24243875 | Msa0945460:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 6_3:-24243729 | Msa0945460:CDS |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 6_3:-24245508 | Msa0945460:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 6_3:+24245422 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 6_3:-24245544 | Msa0945460:CDS |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 6_3:+24245950 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 6_3:+24246431 | None:intergenic |
| ATGATAGTAGCCAACATTAG+AGG | 0.411624 | 6_3:+24246517 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 6_3:-24246707 | Msa0945460:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 6_3:-24247085 | Msa0945460:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 6_3:-24243636 | Msa0945460:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 6_3:-24244095 | Msa0945460:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 6_3:+24244087 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 6_3:+24244783 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 6_3:-24243765 | Msa0945460:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.451171 | 6_3:-24243564 | Msa0945460:CDS |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 6_3:-24243655 | Msa0945460:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 6_3:+24246621 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 6_3:+24243963 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 6_3:-24247160 | Msa0945460:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 6_3:-24246541 | Msa0945460:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 6_3:-24246723 | Msa0945460:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 6_3:+24243891 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 6_3:-24243648 | Msa0945460:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 6_3:-24243663 | Msa0945460:CDS |
| TTCTTTAATTCGTATTCGCT+CGG | 0.481492 | 6_3:+24245975 | None:intergenic |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 6_3:-24243774 | Msa0945460:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 6_3:-24245521 | Msa0945460:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 6_3:+24243662 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 6_3:-24247073 | Msa0945460:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 6_3:-24245648 | Msa0945460:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 6_3:-24245553 | Msa0945460:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 6_3:-24243976 | Msa0945460:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 6_3:-24246749 | Msa0945460:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 6_3:-24245600 | Msa0945460:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 6_3:-24246581 | Msa0945460:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 6_3:+24243681 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 6_3:+24243427 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 6_3:-24245452 | Msa0945460:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 6_3:-24247195 | Msa0945460:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 6_3:+24246748 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 6_3:-24244855 | Msa0945460:CDS |
| GCCTCCACGACTTCTTCCTC+AGG | 0.514345 | 6_3:-24246203 | Msa0945460:intron |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 6_3:+24246554 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 6_3:-24246802 | Msa0945460:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 6_3:-24243421 | Msa0945460:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 6_3:+24245793 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 6_3:-24243385 | Msa0945460:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 6_3:+24246563 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 6_3:-24246743 | Msa0945460:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 6_3:+24245434 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 6_3:+24243682 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 6_3:-24243415 | Msa0945460:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.541788 | 6_3:-24245973 | Msa0945460:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 6_3:-24243406 | Msa0945460:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 6_3:-24243799 | Msa0945460:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 6_3:-24246006 | Msa0945460:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 6_3:-24243723 | Msa0945460:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 6_3:-24243973 | Msa0945460:CDS |
| GATCACTTGTAGTTAGGATG+AGG | 0.549158 | 6_3:+24246678 | None:intergenic |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 6_3:-24245383 | Msa0945460:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 6_3:-24246746 | Msa0945460:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 6_3:-24244065 | Msa0945460:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 6_3:-24245711 | Msa0945460:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 6_3:+24245478 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 6_3:-24244068 | Msa0945460:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.565226 | 6_3:-24247194 | Msa0945460:CDS |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 6_3:+24243896 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 6_3:-24245892 | Msa0945460:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 6_3:-24243862 | Msa0945460:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 6_3:-24243416 | Msa0945460:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 6_3:-24245895 | Msa0945460:CDS |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 6_3:+24243647 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 6_3:-24244050 | Msa0945460:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 6_3:-24246035 | Msa0945460:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 6_3:-24243318 | Msa0945460:CDS |
| ATTCCGTGTTGTTATAGTGA+AGG | 0.586856 | 6_3:-24246012 | Msa0945460:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 6_3:+24243971 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 6_3:+24247161 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 6_3:-24244104 | Msa0945460:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 6_3:-24246628 | Msa0945460:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 6_3:-24245552 | Msa0945460:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 6_3:-24243373 | Msa0945460:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 6_3:-24245791 | Msa0945460:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.594942 | 6_3:+24246030 | None:intergenic |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 6_3:+24243495 | None:intergenic |
| CCTGAATGGACCTCTAATGT+TGG | 0.597938 | 6_3:-24246527 | Msa0945460:CDS |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 6_3:-24244188 | Msa0945460:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 6_3:+24245643 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 6_3:-24243507 | Msa0945460:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 6_3:+24244152 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 6_3:+24246788 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 6_3:-24244175 | Msa0945460:CDS |
| ATATTCCTCAAAGGAGAGGG+GGG | 0.613156 | 6_3:-24247191 | Msa0945460:CDS |
| GGTGTCAAAGCTAACTATAG+AGG | 0.613947 | 6_3:-24243543 | Msa0945460:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 6_3:-24247200 | Msa0945460:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 6_3:+24244056 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 6_3:-24245853 | Msa0945460:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 6_3:-24245847 | Msa0945460:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 6_3:+24243824 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 6_3:+24244057 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 6_3:+24245748 | None:intergenic |
| AATACCTGAGGAAGAAGTCG+TGG | 0.639662 | 6_3:+24246199 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 6_3:-24247081 | Msa0945460:CDS |
| TATTCCTCAAAGGAGAGGGG+GGG | 0.646481 | 6_3:-24247190 | Msa0945460:CDS |
| CAATATTCCTCAAAGGAGAG+GGG | 0.647996 | 6_3:-24247193 | Msa0945460:CDS |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 6_3:-24245857 | Msa0945460:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 6_3:+24245708 | None:intergenic |
| AATATTCCTCAAAGGAGAGG+GGG | 0.653283 | 6_3:-24247192 | Msa0945460:CDS |
| ACTCGAACTTGTCACTACAA+AGG | 0.654178 | 6_3:-24246390 | Msa0945460:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 6_3:-24243940 | Msa0945460:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 6_3:+24244103 | None:intergenic |
| TTTCCTTCACTATAACAACA+CGG | 0.670201 | 6_3:+24246009 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 6_3:-24246474 | Msa0945460:CDS |
| GCGATTAGTCACGAGGTTCG+GGG | 0.680730 | 6_3:-24246467 | Msa0945460:CDS |
| ACCTGAGGAAGAAGTCGTGG+AGG | 0.684396 | 6_3:+24246202 | None:intergenic |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 6_3:-24243881 | Msa0945460:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 6_3:-24243315 | Msa0945460:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 6_3:-24245460 | Msa0945460:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 6_3:+24245780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr6_3:24245178-24245197 | None:intergenic | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr6_3:24245585-24245604 | Msa0945460:CDS | 15.0% |
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr6_3:24245618-24245637 | None:intergenic | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr6_3:24245625-24245644 | Msa0945460:CDS | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr6_3:24247048-24247067 | Msa0945460:CDS | 15.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr6_3:24243656-24243675 | Msa0945460:CDS | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr6_3:24244145-24244164 | None:intergenic | 20.0% |
| !! | GAAAATAGAAAAGTAGTATA+TGG | + | chr6_3:24244215-24244234 | None:intergenic | 20.0% |
| !! | AAATGATATATCAGAAATTC+AGG | + | chr6_3:24244339-24244358 | None:intergenic | 20.0% |
| !!! | TTTTATCTGAAATTCTTAAG+AGG | - | chr6_3:24244356-24244375 | Msa0945460:intron | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr6_3:24244605-24244624 | Msa0945460:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr6_3:24244609-24244628 | Msa0945460:intron | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr6_3:24245552-24245571 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr6_3:24245581-24245600 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr6_3:24245826-24245845 | Msa0945460:CDS | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr6_3:24245827-24245846 | Msa0945460:CDS | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr6_3:24246146-24246165 | None:intergenic | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr6_3:24246233-24246252 | None:intergenic | 20.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr6_3:24243518-24243537 | Msa0945460:CDS | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr6_3:24243545-24243564 | None:intergenic | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr6_3:24243542-24243561 | Msa0945460:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr6_3:24243545-24243564 | Msa0945460:CDS | 25.0% |
| !!! | AAAAGTGCTATTACAAGAAA+TGG | - | chr6_3:24243586-24243605 | Msa0945460:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr6_3:24243854-24243873 | None:intergenic | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr6_3:24243908-24243927 | Msa0945460:CDS | 25.0% |
| ! | AATAGAAAAGTAGTATATGG+TGG | + | chr6_3:24244212-24244231 | None:intergenic | 25.0% |
| ! | ATACACACTGCATAAAAAAA+AGG | + | chr6_3:24244383-24244402 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr6_3:24244557-24244576 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr6_3:24244983-24245002 | Msa0945460:intron | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr6_3:24245109-24245128 | None:intergenic | 25.0% |
| ! | GAAACATATGCTTCTTAAAA+TGG | + | chr6_3:24245208-24245227 | None:intergenic | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr6_3:24245285-24245304 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr6_3:24245313-24245332 | Msa0945460:intron | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr6_3:24245378-24245397 | Msa0945460:intron | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr6_3:24245379-24245398 | Msa0945460:intron | 25.0% |
| ! | ATAGCAAATTAAGTGTGATA+TGG | + | chr6_3:24245503-24245522 | None:intergenic | 25.0% |
| !!! | TATCACACTTAATTTGCTAT+AGG | - | chr6_3:24245503-24245522 | Msa0945460:CDS | 25.0% |
| !!! | ATCACACTTAATTTGCTATA+GGG | - | chr6_3:24245504-24245523 | Msa0945460:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr6_3:24245746-24245765 | Msa0945460:CDS | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr6_3:24245747-24245766 | Msa0945460:CDS | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr6_3:24245948-24245967 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr6_3:24246152-24246171 | None:intergenic | 25.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr6_3:24246701-24246720 | Msa0945460:CDS | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr6_3:24246763-24246782 | Msa0945460:CDS | 25.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr6_3:24243356-24243375 | None:intergenic | 30.0% |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr6_3:24243380-24243399 | None:intergenic | 30.0% |
| CTTTCATCATTTGCATATGA+TGG | - | chr6_3:24243491-24243510 | Msa0945460:CDS | 30.0% | |
| TGATATCAAAATCACCTAGT+TGG | - | chr6_3:24243702-24243721 | Msa0945460:CDS | 30.0% | |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr6_3:24243907-24243926 | Msa0945460:CDS | 30.0% |
| TCAGAGTTCATATCAGATAT+AGG | + | chr6_3:24244076-24244095 | None:intergenic | 30.0% | |
| TTTCCTTCACTATAACAACA+CGG | + | chr6_3:24244498-24244517 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr6_3:24244498-24244517 | Msa0945460:intron | 30.0% | |
| TTCTTTAATTCGTATTCGCT+CGG | + | chr6_3:24244532-24244551 | None:intergenic | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr6_3:24244612-24244631 | Msa0945460:intron | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr6_3:24244855-24244874 | Msa0945460:CDS | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr6_3:24244856-24244875 | Msa0945460:CDS | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr6_3:24244904-24244923 | Msa0945460:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr6_3:24244996-24245015 | Msa0945460:intron | 30.0% | |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr6_3:24245016-24245035 | Msa0945460:intron | 30.0% |
| GAAACGAACCTAAAAAATAG+TGG | - | chr6_3:24245098-24245117 | Msa0945460:intron | 30.0% | |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr6_3:24245265-24245284 | None:intergenic | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr6_3:24245266-24245285 | None:intergenic | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr6_3:24245387-24245406 | Msa0945460:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr6_3:24245391-24245410 | Msa0945460:CDS | 30.0% |
| TAACCAACAGAATGAAATCT+GGG | - | chr6_3:24245463-24245482 | Msa0945460:CDS | 30.0% | |
| !! | TCACACTTAATTTGCTATAG+GGG | - | chr6_3:24245505-24245524 | Msa0945460:CDS | 30.0% |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr6_3:24245613-24245632 | None:intergenic | 30.0% | |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr6_3:24245635-24245654 | Msa0945460:CDS | 30.0% |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr6_3:24245748-24245767 | Msa0945460:CDS | 30.0% | |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr6_3:24245836-24245855 | Msa0945460:CDS | 30.0% |
| TGCAACTCTTAAACTTATGA+TGG | + | chr6_3:24245900-24245919 | None:intergenic | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr6_3:24245975-24245994 | Msa0945460:CDS | 30.0% | |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr6_3:24246097-24246116 | None:intergenic | 30.0% |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr6_3:24246107-24246126 | Msa0945460:CDS | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr6_3:24246187-24246206 | None:intergenic | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr6_3:24246489-24246508 | None:intergenic | 30.0% | |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr6_3:24246564-24246583 | Msa0945460:CDS | 30.0% |
| GTATTGAAGATTCAACAACA+TGG | - | chr6_3:24246623-24246642 | Msa0945460:CDS | 30.0% | |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr6_3:24246673-24246692 | None:intergenic | 30.0% |
| TTCAAGAACATAATCTACAG+AGG | + | chr6_3:24246683-24246702 | None:intergenic | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr6_3:24246700-24246719 | Msa0945460:CDS | 30.0% | |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr6_3:24246730-24246749 | Msa0945460:CDS | 30.0% |
| TTCAATGATTGAACTTGGTT+TGG | - | chr6_3:24246768-24246787 | Msa0945460:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr6_3:24246940-24246959 | Msa0945460:CDS | 30.0% | |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr6_3:24243419-24243438 | Msa0945460:CDS | 35.0% |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr6_3:24243745-24243764 | Msa0945460:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr6_3:24243781-24243800 | Msa0945460:CDS | 35.0% | |
| AGGTCATCACCATACTTTAT+AGG | + | chr6_3:24243809-24243828 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr6_3:24243835-24243854 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr6_3:24243857-24243876 | Msa0945460:CDS | 35.0% | |
| ATGATAGTAGCCAACATTAG+AGG | + | chr6_3:24243990-24244009 | None:intergenic | 35.0% | |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr6_3:24244165-24244184 | Msa0945460:CDS | 35.0% |
| ! | ATTCCGTGTTGTTATAGTGA+AGG | - | chr6_3:24244492-24244511 | Msa0945460:intron | 35.0% |
| GAGCGAATACGAATTAAAGA+AGG | - | chr6_3:24244531-24244550 | Msa0945460:intron | 35.0% | |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr6_3:24244647-24244666 | Msa0945460:intron | 35.0% |
| TTCACATCGGTATAGAAGAA+TGG | + | chr6_3:24244714-24244733 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr6_3:24244713-24244732 | Msa0945460:intron | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr6_3:24244727-24244746 | None:intergenic | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr6_3:24244864-24244883 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr6_3:24244925-24244944 | Msa0945460:intron | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr6_3:24244952-24244971 | Msa0945460:intron | 35.0% | |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr6_3:24245015-24245034 | Msa0945460:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr6_3:24245017-24245036 | Msa0945460:intron | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr6_3:24245073-24245092 | None:intergenic | 35.0% |
| GTAACCAACAGAATGAAATC+TGG | - | chr6_3:24245462-24245481 | Msa0945460:CDS | 35.0% | |
| AACCAACAGAATGAAATCTG+GGG | - | chr6_3:24245464-24245483 | Msa0945460:CDS | 35.0% | |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr6_3:24245716-24245735 | Msa0945460:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr6_3:24245724-24245743 | None:intergenic | 35.0% |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr6_3:24245749-24245768 | Msa0945460:CDS | 35.0% | |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr6_3:24245860-24245879 | Msa0945460:CDS | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr6_3:24245861-24245880 | Msa0945460:CDS | 35.0% |
| GCTCTTATTCACAGATAAGT+GGG | + | chr6_3:24246075-24246094 | None:intergenic | 35.0% | |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr6_3:24246112-24246131 | None:intergenic | 35.0% |
| AACCAAGGATGTTATGAACT+TGG | + | chr6_3:24246172-24246191 | None:intergenic | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr6_3:24246225-24246244 | None:intergenic | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr6_3:24246226-24246245 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr6_3:24246307-24246326 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr6_3:24246316-24246335 | Msa0945460:intron | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr6_3:24246329-24246348 | Msa0945460:intron | 35.0% | |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr6_3:24246355-24246374 | None:intergenic | 35.0% |
| GGTTCAATCATCCAACAAAT+TGG | - | chr6_3:24246475-24246494 | Msa0945460:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr6_3:24246573-24246592 | Msa0945460:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr6_3:24246611-24246630 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr6_3:24246616-24246635 | None:intergenic | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr6_3:24246629-24246648 | Msa0945460:CDS | 35.0% | |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr6_3:24246775-24246794 | Msa0945460:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr6_3:24246912-24246931 | None:intergenic | 35.0% |
| AGTTGAAAACAACCTACAGA+TGG | + | chr6_3:24247012-24247031 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr6_3:24247080-24247099 | None:intergenic | 35.0% | |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr6_3:24247083-24247102 | Msa0945460:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr6_3:24247088-24247107 | Msa0945460:CDS | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr6_3:24247089-24247108 | Msa0945460:CDS | 35.0% |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr6_3:24247131-24247150 | Msa0945460:CDS | 35.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr6_3:24243304-24243323 | Msa0945460:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr6_3:24243309-24243328 | Msa0945460:CDS | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr6_3:24243310-24243329 | Msa0945460:CDS | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr6_3:24243311-24243330 | Msa0945460:CDS | 40.0% | |
| AATATTCCTCAAAGGAGAGG+GGG | - | chr6_3:24243312-24243331 | Msa0945460:CDS | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr6_3:24243346-24243365 | None:intergenic | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr6_3:24243344-24243363 | Msa0945460:CDS | 40.0% | |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr6_3:24243423-24243442 | Msa0945460:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr6_3:24243755-24243774 | Msa0945460:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr6_3:24243759-24243778 | None:intergenic | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr6_3:24243758-24243777 | Msa0945460:CDS | 40.0% |
| GAGGAATACTAGCACAAGTT+TGG | - | chr6_3:24243780-24243799 | Msa0945460:CDS | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr6_3:24243797-24243816 | Msa0945460:CDS | 40.0% | |
| GATCACTTGTAGTTAGGATG+AGG | + | chr6_3:24243829-24243848 | None:intergenic | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr6_3:24243923-24243942 | Msa0945460:CDS | 40.0% |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr6_3:24243963-24243982 | Msa0945460:CDS | 40.0% | |
| ACTCGAACTTGTCACTACAA+AGG | - | chr6_3:24244114-24244133 | Msa0945460:CDS | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr6_3:24244651-24244670 | Msa0945460:intron | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr6_3:24244799-24244818 | None:intergenic | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr6_3:24244951-24244970 | Msa0945460:intron | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr6_3:24245044-24245063 | Msa0945460:intron | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr6_3:24245085-24245104 | None:intergenic | 40.0% | |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr6_3:24245121-24245140 | Msa0945460:intron | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr6_3:24245428-24245447 | None:intergenic | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr6_3:24245427-24245446 | Msa0945460:CDS | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr6_3:24245435-24245454 | None:intergenic | 40.0% | |
| GGTTACAAACTTACAACTCC+TGG | + | chr6_3:24245448-24245467 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr6_3:24245465-24245484 | Msa0945460:CDS | 40.0% | |
| !! | CTTAATTTGCTATAGGGGAG+TGG | - | chr6_3:24245510-24245529 | Msa0945460:CDS | 40.0% |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr6_3:24245649-24245668 | Msa0945460:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr6_3:24246076-24246095 | None:intergenic | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr6_3:24246167-24246186 | Msa0945460:intron | 40.0% | |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr6_3:24246525-24246544 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr6_3:24246526-24246545 | None:intergenic | 40.0% |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr6_3:24246528-24246547 | Msa0945460:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr6_3:24246544-24246563 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr6_3:24246705-24246724 | Msa0945460:CDS | 40.0% | |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr6_3:24246781-24246800 | Msa0945460:CDS | 40.0% |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr6_3:24246868-24246887 | Msa0945460:CDS | 40.0% | |
| GGTGTCAAAGCTAACTATAG+AGG | - | chr6_3:24246961-24246980 | Msa0945460:CDS | 40.0% | |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr6_3:24246997-24247016 | Msa0945460:CDS | 40.0% |
| GGTGAATGACTCAGATTTGA+AGG | - | chr6_3:24247119-24247138 | Msa0945460:CDS | 40.0% | |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr6_3:24247147-24247166 | Msa0945460:CDS | 40.0% |
| TTGCTCGTTCGCAATATACA+TGG | - | chr6_3:24247186-24247205 | Msa0945460:CDS | 40.0% | |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr6_3:24243313-24243332 | None:intergenic | 45.0% |
| ATATTCCTCAAAGGAGAGGG+GGG | - | chr6_3:24243313-24243332 | Msa0945460:CDS | 45.0% | |
| CTCTCATCAAGTGACCAACT+AGG | + | chr6_3:24243719-24243738 | None:intergenic | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr6_3:24243761-24243780 | Msa0945460:CDS | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr6_3:24243980-24243999 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr6_3:24243977-24243996 | Msa0945460:CDS | 45.0% | |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr6_3:24244030-24244049 | Msa0945460:CDS | 45.0% |
| ! | ATGCGATTAGTCACGAGGTT+CGG | - | chr6_3:24244035-24244054 | Msa0945460:CDS | 45.0% |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr6_3:24244169-24244188 | Msa0945460:CDS | 45.0% | |
| TTTCGCAGCGTGTGAATCTA+AGG | - | chr6_3:24244270-24244289 | Msa0945460:intron | 45.0% | |
| AATACCTGAGGAAGAAGTCG+TGG | + | chr6_3:24244308-24244327 | None:intergenic | 45.0% | |
| CAGGAATCTGCAAATACCTG+AGG | + | chr6_3:24244320-24244339 | None:intergenic | 45.0% | |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr6_3:24244469-24244488 | Msa0945460:intron | 45.0% |
| CATCATCTTGAGGAAGGACA+AGG | - | chr6_3:24244657-24244676 | Msa0945460:intron | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr6_3:24244666-24244685 | Msa0945460:intron | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr6_3:24244787-24244806 | Msa0945460:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr6_3:24244960-24244979 | Msa0945460:intron | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr6_3:24245245-24245264 | Msa0945460:intron | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr6_3:24245469-24245488 | None:intergenic | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr6_3:24245468-24245487 | Msa0945460:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr6_3:24245469-24245488 | Msa0945460:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr6_3:24245663-24245682 | Msa0945460:CDS | 45.0% | |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr6_3:24245673-24245692 | Msa0945460:CDS | 45.0% |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr6_3:24246008-24246027 | None:intergenic | 45.0% | |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr6_3:24246125-24246144 | None:intergenic | 45.0% |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr6_3:24246404-24246423 | None:intergenic | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr6_3:24246409-24246428 | Msa0945460:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr6_3:24246420-24246439 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr6_3:24246436-24246455 | Msa0945460:CDS | 45.0% | |
| AAATTTGACCCTCACACTGG+TGG | - | chr6_3:24246439-24246458 | Msa0945460:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr6_3:24246450-24246469 | None:intergenic | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr6_3:24246531-24246550 | Msa0945460:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr6_3:24246536-24246555 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr6_3:24246642-24246661 | Msa0945460:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr6_3:24246739-24246758 | Msa0945460:CDS | 45.0% |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr6_3:24246825-24246844 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr6_3:24246826-24246845 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr6_3:24247098-24247117 | Msa0945460:CDS | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr6_3:24247189-24247208 | Msa0945460:CDS | 45.0% | |
| TATTCCTCAAAGGAGAGGGG+GGG | - | chr6_3:24243314-24243333 | Msa0945460:CDS | 50.0% | |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr6_3:24243431-24243450 | Msa0945460:CDS | 50.0% |
| TAAACGACCTCGACACTTCG+CGG | + | chr6_3:24243886-24243905 | None:intergenic | 50.0% | |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr6_3:24243932-24243951 | Msa0945460:CDS | 50.0% |
| ! | TGCGATTAGTCACGAGGTTC+GGG | - | chr6_3:24244036-24244055 | Msa0945460:CDS | 50.0% |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr6_3:24244477-24244496 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr6_3:24244759-24244778 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr6_3:24244793-24244812 | Msa0945460:CDS | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr6_3:24245029-24245048 | None:intergenic | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr6_3:24245339-24245358 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr6_3:24245470-24245489 | Msa0945460:CDS | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr6_3:24245471-24245490 | Msa0945460:CDS | 50.0% | |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr6_3:24245869-24245888 | Msa0945460:CDS | 50.0% |
| CACAGATAAGTGGGCAGATG+CGG | + | chr6_3:24246066-24246085 | None:intergenic | 50.0% | |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr6_3:24246400-24246419 | Msa0945460:CDS | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr6_3:24246451-24246470 | None:intergenic | 50.0% | |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr6_3:24246451-24246470 | Msa0945460:CDS | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr6_3:24246454-24246473 | Msa0945460:CDS | 50.0% |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr6_3:24246841-24246860 | Msa0945460:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr6_3:24246845-24246864 | None:intergenic | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr6_3:24246849-24246868 | Msa0945460:CDS | 50.0% |
| TCCATTCACCATTGAGCCAG+AGG | + | chr6_3:24246860-24246879 | None:intergenic | 50.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr6_3:24243953-24243972 | None:intergenic | 55.0% | |
| ! | GCGATTAGTCACGAGGTTCG+GGG | - | chr6_3:24244037-24244056 | Msa0945460:CDS | 55.0% |
| ACCTGAGGAAGAAGTCGTGG+AGG | + | chr6_3:24244305-24244324 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr6_3:24245052-24245071 | Msa0945460:intron | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr6_3:24245353-24245372 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr6_3:24245472-24245491 | Msa0945460:CDS | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr6_3:24245518-24245537 | Msa0945460:CDS | 55.0% | |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr6_3:24245868-24245887 | Msa0945460:CDS | 55.0% |
| CCAACCCTCACACCCTCAAT+GGG | + | chr6_3:24245876-24245895 | None:intergenic | 55.0% | |
| ACCAACCCTCACACCCTCAA+TGG | + | chr6_3:24245877-24245896 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr6_3:24246856-24246875 | Msa0945460:CDS | 55.0% |
| GATTCCCCCCCTCTCCTTTG+AGG | + | chr6_3:24243321-24243340 | None:intergenic | 60.0% | |
| AGAGGGGGGGAATCAGCCTT+TGG | - | chr6_3:24243327-24243346 | Msa0945460:CDS | 60.0% | |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr6_3:24243876-24243895 | Msa0945460:CDS | 60.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr6_3:24243944-24243963 | None:intergenic | 60.0% | |
| GCCTCCACGACTTCTTCCTC+AGG | - | chr6_3:24244301-24244320 | Msa0945460:intron | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr6_3:24245348-24245367 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr6_3:24245873-24245892 | Msa0945460:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr6_3:24246057-24246076 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 24243302 | 24247224 | 24243302 | ID=Msa0945460;Name=Msa0945460 |
| chr6_3 | mRNA | 24243302 | 24247224 | 24243302 | ID=Msa0945460-mRNA-1;Parent=Msa0945460;Name=Msa0945460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.2|1|1|1|5|0|908 |
| chr6_3 | exon | 24246340 | 24247224 | 24246340 | ID=Msa0945460-mRNA-1:exon:6886;Parent=Msa0945460-mRNA-1 |
| chr6_3 | exon | 24246204 | 24246248 | 24246204 | ID=Msa0945460-mRNA-1:exon:6885;Parent=Msa0945460-mRNA-1 |
| chr6_3 | exon | 24245384 | 24246130 | 24245384 | ID=Msa0945460-mRNA-1:exon:6884;Parent=Msa0945460-mRNA-1 |
| chr6_3 | exon | 24244756 | 24244879 | 24244756 | ID=Msa0945460-mRNA-1:exon:6883;Parent=Msa0945460-mRNA-1 |
| chr6_3 | exon | 24243302 | 24244227 | 24243302 | ID=Msa0945460-mRNA-1:exon:6882;Parent=Msa0945460-mRNA-1 |
| chr6_3 | CDS | 24246340 | 24247224 | 24246340 | ID=Msa0945460-mRNA-1:cds;Parent=Msa0945460-mRNA-1 |
| chr6_3 | CDS | 24246204 | 24246248 | 24246204 | ID=Msa0945460-mRNA-1:cds;Parent=Msa0945460-mRNA-1 |
| chr6_3 | CDS | 24245384 | 24246130 | 24245384 | ID=Msa0945460-mRNA-1:cds;Parent=Msa0945460-mRNA-1 |
| chr6_3 | CDS | 24244756 | 24244879 | 24244756 | ID=Msa0945460-mRNA-1:cds;Parent=Msa0945460-mRNA-1 |
| chr6_3 | CDS | 24243302 | 24244227 | 24243302 | ID=Msa0945460-mRNA-1:cds;Parent=Msa0945460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
