AlfalfaGEDB | Msa0604980

M. sativa cultivar zhongmu-4 / Msa0604980

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604980	XP_024636796.1	96.721	915	27	1	1	915	1	912	0.0	1845

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604980	sp\|O22864\|NLP8_ARATH	49.180	976	382	26	1	909	1	929	0.0	777

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604980	G7JDS3	96.721	915	27	1	1	915	1	912	0.0	1845

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TFs/TRs:

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Gene ID	Type	Classification
Msa0604980	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0542110	Msa0604980	0.898812	3.676465e-77	-8.615850e-47
Msa0542150	Msa0604980	0.905006	6.769650e-80	-8.615850e-47
Msa0604980	Msa0685160	0.887150	1.836943e-72	-8.615850e-47
Msa0604980	Msa0945460	0.875741	2.426406e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604980	MtrunA17_Chr4g0033791	96.721	915	27	1	1	915	1	912	0.0	1845
Msa0604980	MtrunA17_Chr2g0329671	59.375	960	325	18	1	909	1	946	0.0	1064
Msa0604980	MtrunA17_Chr6g0472281	36.717	798	402	20	150	909	112	844	7.21e-138	432
Msa0604980	MtrunA17_Chr3g0143921	39.744	546	286	12	149	663	138	671	1.37e-116	378
Msa0604980	MtrunA17_Chr1g0203081	40.530	528	288	10	150	657	124	645	6.84e-113	369
Msa0604980	MtrunA17_Chr1g0203081	44.444	81	44	1	830	909	886	966	2.82e-15	80.9
Msa0604980	MtrunA17_Chr5g0448621	33.884	363	196	11	146	500	122	448	4.32e-46	179
Msa0604980	MtrunA17_Chr5g0448621	67.778	90	25	1	576	665	607	692	2.74e-31	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0604980	AT2G43500.3	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.9	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.6	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.1	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.10	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.11	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.7	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.8	49.948	963	381	25	1	909	1	916	789
Msa0604980	AT2G43500.5	49.283	976	381	26	1	909	1	929	780
Msa0604980	AT2G43500.4	49.283	976	381	26	1	909	1	929	780

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Find 150 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTAAGTTACAAAA+TGG	0.299236	4_2:+50746743	Msa0604980:CDS
AAAATGGGATCTTGTTGTCC+TGG	0.501858	4_2:+50743351	Msa0604980:CDS
AAATCAAGCTGCTTACAGTC+AGG	0.553977	4_2:+50744809	Msa0604980:CDS
AAATGTGCTATTACAAGAAA+TGG	0.345785	4_2:+50743014	Msa0604980:CDS
AAATTTGACCCTCACACTGG+TGG	0.556063	4_2:+50746134	Msa0604980:CDS
AACAAGTGGTTCAAGAAAGC+AGG	0.511373	4_2:+50745344	Msa0604980:CDS
AACACGCGACCAGGAAGTCC+AGG	0.529959	4_2:-50743369	None:intergenic
AACATCATAAGCCTTCACAT+CGG	0.714348	4_2:-50744412	None:intergenic
AACATGTCATCTGAAGTTAA+TGG	0.354035	4_2:-50742784	None:intergenic
AACCTCAGTACCTAAGTTGG+AGG	0.547544	4_2:+50746226	Msa0604980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCATCATTTGCATATGA+TGG	+	chr4_2:50742898-50742917	Msa0604980:CDS	30.0%
GAAATTGGTGGAAATTACAA+TGG	+	chr4_2:50742964-50742983	Msa0604980:CDS	30.0%
TGATATCAAAATCACCTAGT+TGG	+	chr4_2:50743130-50743149	Msa0604980:CDS	30.0%
ATGATAGTAACCAACATTAG+AGG	-	chr4_2:50743418-50743437	None:intergenic	30.0%
TCAGAGTTCATATCAGATAT+AGG	-	chr4_2:50743504-50743523	None:intergenic	30.0%
AAATCAAACAAAGGCTACTT+TGG	+	chr4_2:50743771-50743790	Msa0604980:intron	30.0%
TCCATTCAATCAAATTATGG+TGG	+	chr4_2:50743847-50743866	Msa0604980:intron	30.0%
ATTCCATGTTGTTATAGTGA+AGG	+	chr4_2:50744180-50744199	Msa0604980:CDS	30.0%
TTTCCTTCACTATAACAACA+TGG	-	chr4_2:50744186-50744205	None:intergenic	30.0%
TGTTGTTATAGTGAAGGAAA+AGG	+	chr4_2:50744186-50744205	Msa0604980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	50742709	50746919	50742709	ID=Msa0604980;Name=Msa0604980
chr4_2	mRNA	50742709	50746919	50742709	ID=Msa0604980-mRNA-1;Parent=Msa0604980;Name=Msa0604980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.5\|0.2\|1\|1\|1\|5\|0\|915
chr4_2	exon	50742709	50743614	50742709	ID=Msa0604980-mRNA-1:exon:11975;Parent=Msa0604980-mRNA-1
chr4_2	exon	50743963	50744007	50743963	ID=Msa0604980-mRNA-1:exon:11976;Parent=Msa0604980-mRNA-1
chr4_2	exon	50744084	50744830	50744084	ID=Msa0604980-mRNA-1:exon:11977;Parent=Msa0604980-mRNA-1
chr4_2	exon	50745342	50745465	50745342	ID=Msa0604980-mRNA-1:exon:11978;Parent=Msa0604980-mRNA-1
chr4_2	exon	50745994	50746919	50745994	ID=Msa0604980-mRNA-1:exon:11979;Parent=Msa0604980-mRNA-1
chr4_2	CDS	50742709	50743614	50742709	ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2	CDS	50743963	50744007	50743963	ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2	CDS	50744084	50744830	50744084	ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2	CDS	50745342	50745465	50745342	ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2	CDS	50745994	50746919	50745994	ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1

Gene Sequence

>Msa0604980

ATGGAAGACCAATATTCCTCAAAGGAGAGGGGGGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTCCATTAACTTCAGATGACATGTTTAACAACATCTCTGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATGATGGATTGAATTTAGCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGGTATGGATAGTTCCACTAGTTATGATGAAAATGTGCTATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATCATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATGATATCAAAATCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACCTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTGTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTCCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGTTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCGATTAGTCACGAGGTTCGAGGATCGATTGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATCTAAGGACTATTATGCCTCCAAGACTTCTTCCACAGTGTGTATCAAATAACAAAAGAGCTGCGTTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTTTACCTCTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGAATTAAAGAAGGCCATATGACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACGAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATAGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTAGGGGCAACTCTCAGATAGCGTTTAGTAGCGGTGACCAGGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGCAACAAGTGGTTCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCTGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAAAATTGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGTTCAATCATCCAACAAATTGGTACGCATAATAAAACTCTCATGTTCCCTGAGAAAACCTCAGTACCTAAGTTGGAGGATGAAGATGTTCTTGTTTCTAATTCATGTGAGGCAGAATTGGAGAAAGACAATGCCATTCCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCTCTGTAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGTAGTTTGCATGATGTTGGCTCTCATGGTTCTTTTTCAATGATTGAACTTGGTTTGGAAGAAGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCGAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCAGGATCTCAAAGCATTGAGAACCAGAAGCACTCGAAAATCAAATCAATCTGTGTCGATAGTGAATCAAAATTCGGTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTCGATCCATCTGTAGGTTGTTTTCAACTCTATGAAGAAGTTGCAAAAAGATTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAGGTTTTGAGTGACATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA

Protein sequence

>Msa0604980

MEDQYSSKERGGISLWTPFDSGMKSPLTSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYDGLNLAEHINGPFFMTEIGGNYNGMDSSTSYDENVLLQEMETQLEFLDHNSNETNNNLDSQQNGSYDMCNYMISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDLILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCPGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSNNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHMTSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGIEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDQDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGTHNKTLMFPEKTSVPKLEDEDVLVSNSCEAELEKDNAIPVDCIEDSTTWLWTKTQDCPKQTSVDYVLEKEQDQCGLDNSSLHDVGSHGSFSMIELGLEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKIKSICVDSESKFGVKANYRGDTIRFKFDPSVGCFQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS*