AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604980 MtrunA17_Chr4g0033791 96.721 915 27 1 1 915 1 912 0.0 1845
Msa0604980 MtrunA17_Chr2g0329671 59.375 960 325 18 1 909 1 946 0.0 1064
Msa0604980 MtrunA17_Chr6g0472281 36.717 798 402 20 150 909 112 844 7.21e-138 432
Msa0604980 MtrunA17_Chr3g0143921 39.744 546 286 12 149 663 138 671 1.37e-116 378
Msa0604980 MtrunA17_Chr1g0203081 40.530 528 288 10 150 657 124 645 6.84e-113 369
Msa0604980 MtrunA17_Chr1g0203081 44.444 81 44 1 830 909 886 966 2.82e-15 80.9
Msa0604980 MtrunA17_Chr5g0448621 33.884 363 196 11 146 500 122 448 4.32e-46 179
Msa0604980 MtrunA17_Chr5g0448621 67.778 90 25 1 576 665 607 692 2.74e-31 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604980 AT2G43500.3 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.9 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.6 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.1 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.10 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.11 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.7 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.8 49.948 963 381 25 1 909 1 916 0.0 789
Msa0604980 AT2G43500.5 49.283 976 381 26 1 909 1 929 0.0 780
Msa0604980 AT2G43500.4 49.283 976 381 26 1 909 1 929 0.0 780
Msa0604980 AT2G43500.2 49.180 976 382 26 1 909 1 929 0.0 777
Msa0604980 AT3G59580.2 49.783 920 366 24 19 909 23 875 0.0 748
Msa0604980 AT3G59580.3 49.783 920 366 24 19 909 23 875 0.0 748
Msa0604980 AT3G59580.1 49.783 920 366 24 19 909 23 875 0.0 748
Msa0604980 AT1G64530.1 41.544 544 283 12 145 656 87 627 2.80e-119 383
Msa0604980 AT1G64530.1 45.679 81 42 2 830 909 744 823 1.82e-13 75.1
Msa0604980 AT1G20640.1 41.486 552 267 12 149 665 104 634 1.57e-118 381
Msa0604980 AT1G20640.3 41.486 552 267 12 149 665 104 634 1.57e-118 381
Msa0604980 AT1G20640.2 41.486 552 267 12 149 665 104 634 1.57e-118 381
Msa0604980 AT1G76350.2 41.887 530 266 12 148 652 104 616 2.33e-118 380
Msa0604980 AT1G76350.1 41.887 530 266 12 148 652 104 616 2.33e-118 380
Msa0604980 AT1G76350.4 41.887 530 266 12 148 652 104 616 2.33e-118 380
Msa0604980 AT1G76350.3 41.887 530 266 12 148 652 104 616 2.33e-118 380
Msa0604980 AT4G24020.1 39.685 572 299 14 115 656 107 662 1.95e-111 365
Msa0604980 AT4G24020.1 45.000 80 44 0 830 909 866 945 1.34e-16 85.5
Msa0604980 AT1G64530.2 42.702 459 229 12 222 656 24 472 2.18e-104 339
Msa0604980 AT1G64530.2 53.125 64 29 1 830 892 589 652 1.73e-13 75.1
Msa0604980 AT2G17150.1 37.329 584 289 14 143 663 117 686 2.83e-103 342
Msa0604980 AT2G17150.1 43.421 76 42 1 830 904 814 889 6.97e-12 70.1
Msa0604980 AT2G17150.6 37.329 584 289 14 143 663 117 686 2.83e-103 342
Msa0604980 AT2G17150.6 43.421 76 42 1 830 904 814 889 6.97e-12 70.1
Msa0604980 AT4G35270.2 35.452 598 292 19 143 663 146 726 2.45e-93 317
Msa0604980 AT4G35270.2 38.462 78 47 1 830 906 865 942 7.97e-11 66.6
Msa0604980 AT4G35270.1 35.452 598 292 19 143 663 146 726 2.45e-93 317
Msa0604980 AT4G35270.1 38.462 78 47 1 830 906 865 942 7.97e-11 66.6
Msa0604980 AT4G35270.3 35.452 598 292 19 143 663 146 726 2.45e-93 317
Msa0604980 AT4G35270.3 38.462 78 47 1 830 906 865 942 7.97e-11 66.6
Msa0604980 AT4G35270.4 35.452 598 292 19 143 663 146 726 2.45e-93 317
Msa0604980 AT4G35270.4 38.462 78 47 1 830 906 865 942 7.97e-11 66.6
Msa0604980 AT4G38340.2 36.207 522 261 14 145 656 39 498 1.66e-84 286
Msa0604980 AT4G38340.1 36.346 520 259 14 145 654 110 567 8.48e-84 286
Msa0604980 AT2G17150.5 33.712 528 273 13 143 607 117 630 8.25e-75 258
Msa0604980 AT2G17150.3 33.712 528 273 13 143 607 117 630 8.25e-75 258
Msa0604980 AT2G17150.2 33.586 527 272 14 143 607 117 627 1.25e-73 255
Msa0604980 AT4G24020.2 40.102 394 202 9 284 656 2 382 3.19e-72 252
Msa0604980 AT4G24020.2 45.000 80 44 0 830 909 586 665 1.01e-16 85.5
Msa0604980 AT2G17150.4 36.256 422 198 10 301 663 22 431 9.21e-65 231
Msa0604980 AT2G17150.4 43.421 76 42 1 830 904 559 634 4.62e-12 70.5

Find 150 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGCTTTATCCTTCTTTA+AGG 0.159389 4_2:+50743173 Msa0604980:CDS
TCTAATTCTTTGTCAAAATT+AGG 0.287200 4_2:-50743570 None:intergenic
CCCTCTCCTTTGAGGAATAT+TGG 0.288875 4_2:-50742717 None:intergenic
ATTTGTTTCTCATGCACTTC+AGG 0.297246 4_2:+50743593 Msa0604980:CDS
TGAATGCTGCCGTTGCAATT+AGG 0.297724 4_2:+50744475 Msa0604980:CDS
AAAAGATTTAAGTTACAAAA+TGG 0.299236 4_2:+50746743 Msa0604980:CDS
TCTTGTTGTCCTGGACTTCC+TGG 0.301260 4_2:+50743360 Msa0604980:CDS
CACACTGGTGGATTTGTTGC+AGG 0.303903 4_2:+50746146 Msa0604980:CDS
TTGCTATATCAATGATAAAA+TGG 0.306339 4_2:+50744293 Msa0604980:CDS
CATATTCTCTTCAGAGTTGT+TGG 0.308883 4_2:-50745999 None:intergenic
AATTTAGATTCACAACAAAA+TGG 0.321611 4_2:+50743084 Msa0604980:CDS
TTTCTTCCGATCAATATGAT+AGG 0.325828 4_2:+50744543 Msa0604980:CDS
CTTTCATCATTTGCATATGA+TGG 0.328114 4_2:+50742898 Msa0604980:CDS
AATTTAGCTGAACACATAAA+TGG 0.329071 4_2:+50742925 Msa0604980:CDS
GGAGAATTTGTAAGAGTTTG+AGG 0.335074 4_2:+50744613 Msa0604980:CDS
GAGGAATACTAGCACAAGTT+TGG 0.342017 4_2:+50743208 Msa0604980:CDS
AAATGTGCTATTACAAGAAA+TGG 0.345785 4_2:+50743014 Msa0604980:CDS
TTCAATGATTGAACTTGGTT+TGG 0.346200 4_2:+50746463 Msa0604980:CDS
TAATTCATGTGAGGCAGAAT+TGG 0.346673 4_2:+50746268 Msa0604980:CDS
TAATCTACAGAGGTTTGTTT+AGG 0.349811 4_2:-50746365 None:intergenic
AACATGTCATCTGAAGTTAA+TGG 0.354035 4_2:-50742784 None:intergenic
GAGGAAGGACAAGGTATATC+TGG 0.362717 4_2:+50744354 Msa0604980:CDS
TTGTTAGATCAAAAGCTTGC+AGG 0.364988 4_2:+50743285 Msa0604980:CDS
AGGTCATCACCATACTTTAT+AGG 0.370674 4_2:-50743234 None:intergenic
ATGGTTGATCACTTGTAGTT+AGG 0.371200 4_2:-50743260 None:intergenic
GGTTCAATCATCCAACAAAT+TGG 0.376103 4_2:+50746170 Msa0604980:CDS
TATTATGCGTACCAATTTGT+TGG 0.379422 4_2:-50746181 None:intergenic
AAGATTCAACAACATGGCTT+TGG 0.385657 4_2:+50746324 Msa0604980:CDS
ATTGAACTTGGTTTGGAAGA+AGG 0.389900 4_2:+50746470 Msa0604980:CDS
TTACGCAGCGTGTGAATCTA+AGG 0.393081 4_2:+50743955 Msa0604980:intron
TTTCAAAAGGAAAATGTCTC+AGG 0.395471 4_2:+50744684 Msa0604980:CDS
TCGTTTCGTTGAATGACATC+TGG 0.396728 4_2:-50744770 None:intergenic
GCTGAACTAAGAGGGATAGA+AGG 0.402797 4_2:+50744648 Msa0604980:CDS
CCAACATTAGAGGTCCATTC+AGG 0.403875 4_2:-50743405 None:intergenic
TTTCATTAGAACTTGTCATA+TGG 0.407153 4_2:-50744242 None:intergenic
TCAGAGTTCATATCAGATAT+AGG 0.407580 4_2:-50743501 None:intergenic
ATGATAGTAACCAACATTAG+AGG 0.414995 4_2:-50743415 None:intergenic
GTTTGGGCACCTATAAAGTA+TGG 0.426412 4_2:+50743225 Msa0604980:CDS
ATGAACTTTGATAGCTATGC+TGG 0.431040 4_2:+50742826 Msa0604980:CDS
ATGGTGAATGGAAGTTCATC+AGG 0.440811 4_2:+50746563 Msa0604980:CDS
GATTCTGTCCAAGGAGTTGA+AGG 0.441649 4_2:+50746104 Msa0604980:CDS
TCAGAACTCCTTCAACTCCT+TGG 0.443312 4_2:-50746112 None:intergenic
GACTACCAGAAAAGTATTGT+TGG 0.443666 4_2:-50745416 None:intergenic
TTGCATGATGTTGGCTCTCA+TGG 0.443915 4_2:+50746434 Msa0604980:CDS
GTCGATAGTGAATCAAAATT+CGG 0.451171 4_2:+50746635 Msa0604980:CDS
ATTACCTGTGGAAGAAGTCT+TGG 0.454612 4_2:-50743990 None:intergenic
ATCGAATGCCTCTGGCTCAA+TGG 0.458272 4_2:+50746544 Msa0604980:CDS
TAAACGACCTCGACACTTCG+CGG 0.462374 4_2:-50743311 None:intergenic
ACATCTTCATCCTCCAACTT+AGG 0.466143 4_2:-50746236 None:intergenic
CTTTGGACACCATTTGATAG+TGG 0.468888 4_2:+50742751 Msa0604980:CDS
TTAACTCGCATGTTCCTGAA+TGG 0.472060 4_2:+50743391 Msa0604980:CDS
AGGAATACTAGCACAAGTTT+GGG 0.473111 4_2:+50743209 Msa0604980:CDS
GAATCTTCAATACAGTCAAC+AGG 0.473305 4_2:-50746308 None:intergenic
GCCTCTGGCTCAATGGTGAA+TGG 0.475824 4_2:+50746551 Msa0604980:CDS
ACCGATTCATCGAATGCCTC+TGG 0.477307 4_2:+50746536 Msa0604980:CDS
TGGTGGAAATTACAATGGTA+TGG 0.477511 4_2:+50742969 Msa0604980:CDS
AATAGTAGTTTGCATGATGT+TGG 0.490581 4_2:+50746425 Msa0604980:CDS
TTCTCAATATGAGTTTCAAA+AGG 0.490680 4_2:+50744671 Msa0604980:CDS
GCCAGAGGCATTCGATGAAT+CGG 0.493281 4_2:-50746537 None:intergenic
AGCTATGCTGGTTGGTGCAA+TGG 0.494942 4_2:+50742838 Msa0604980:CDS
TTCTTCCGATCAATATGATA+GGG 0.494971 4_2:+50744544 Msa0604980:CDS
GTTTCAGAAGCTGAACTAAG+AGG 0.495063 4_2:+50744639 Msa0604980:CDS
GAAAACCTCAGTACCTAAGT+TGG 0.500516 4_2:+50746223 Msa0604980:CDS
TCCTTCTTTAAGGAATCAGC+TGG 0.500538 4_2:+50743183 Msa0604980:CDS
ACAATTTGTCAGATACTATG+AGG 0.500861 4_2:+50744592 Msa0604980:CDS
AAAATGGGATCTTGTTGTCC+TGG 0.501858 4_2:+50743351 Msa0604980:CDS
TCGGTCATGCTTGAAGAAGT+AGG 0.504724 4_2:-50746518 None:intergenic
CATCATCAAGATACTTGAGT+TGG 0.506954 4_2:-50746772 None:intergenic
AGCGTTTAGTAGCGGTGACC+AGG 0.506987 4_2:+50744740 Msa0604980:CDS
ACCAATATTCCTCAAAGGAG+AGG 0.507368 4_2:+50742716 Msa0604980:CDS
ACCAGCTGATTCCTTAAAGA+AGG 0.508019 4_2:-50743184 None:intergenic
AACAAGTGGTTCAAGAAAGC+AGG 0.511373 4_2:+50745344 Msa0604980:CDS
TGCGAGTTAAACACGCGACC+AGG 0.519436 4_2:-50743378 None:intergenic
ACCTGTGGAAGAAGTCTTGG+AGG 0.520926 4_2:-50743987 None:intergenic
TGATATCAAAATCACCTAGT+TGG 0.524042 4_2:+50743130 Msa0604980:CDS
CAAGTATCTTGATGATGAAG+AGG 0.525082 4_2:+50746778 Msa0604980:CDS
TTCACATCGGTATAGAAGAA+TGG 0.526209 4_2:-50744399 None:intergenic
GGTGAATGACTCAGATTTGA+AGG 0.529251 4_2:+50746814 Msa0604980:CDS
AACACGCGACCAGGAAGTCC+AGG 0.529959 4_2:-50743369 None:intergenic
TTTAAGGAATCAGCTGGTGG+AGG 0.534319 4_2:+50743189 Msa0604980:CDS
ATGACATCTGGAATAAATCC+TGG 0.537640 4_2:-50744758 None:intergenic
CGGTCATGCTTGAAGAAGTA+GGG 0.539130 4_2:-50746517 None:intergenic
TCTTGATGATGAAGAGGAAT+GGG 0.541215 4_2:+50746784 Msa0604980:CDS
TGAAGAGGAATGGGTGATGT+TGG 0.542821 4_2:+50746793 Msa0604980:CDS
AGAACAAGATCAATGTGGGT+TGG 0.543970 4_2:+50746400 Msa0604980:CDS
TGTTGTTATAGTGAAGGAAA+AGG 0.544964 4_2:+50744186 Msa0604980:CDS
CTTGGTTTGGAAGAAGGAAA+AGG 0.545190 4_2:+50746476 Msa0604980:CDS
AACCTCAGTACCTAAGTTGG+AGG 0.547544 4_2:+50746226 Msa0604980:CDS
GATCACTTGTAGTTAGGATG+AGG 0.549158 4_2:-50743254 None:intergenic
AAATCAAGCTGCTTACAGTC+AGG 0.553977 4_2:+50744809 Msa0604980:CDS
TTCTTTAAGGAATCAGCTGG+TGG 0.555577 4_2:+50743186 Msa0604980:CDS
AAATTTGACCCTCACACTGG+TGG 0.556063 4_2:+50746134 Msa0604980:CDS
CTGCCGTTGCAATTAGGCTA+AGG 0.556511 4_2:+50744481 Msa0604980:CDS
GCGATTAGTCACGAGGTTCG+AGG 0.560165 4_2:+50743465 Msa0604980:CDS
TGAGAGTTGCCCCTAGACAT+AGG 0.562581 4_2:-50744714 None:intergenic
CTGAAATTTGACCCTCACAC+TGG 0.562922 4_2:+50746131 Msa0604980:CDS
CCAATATTCCTCAAAGGAGA+GGG 0.565226 4_2:+50742717 Msa0604980:CDS
GCCTCCAAGACTTCTTCCAC+AGG 0.567011 4_2:+50743986 Msa0604980:CDS
TTCAATACAGTCAACAGGAA+TGG 0.567975 4_2:-50746303 None:intergenic
ATCAATGATAAAATGGTAGG+AGG 0.568083 4_2:+50744300 Msa0604980:CDS
ATGGCTTTGGACAAAGACTC+AGG 0.569057 4_2:+50746337 Msa0604980:CDS
GAGCGAATACGAATTAAAGA+AGG 0.570990 4_2:+50744219 Msa0604980:CDS
ATTCCATGTTGTTATAGTGA+AGG 0.571178 4_2:+50744180 Msa0604980:CDS
ATCTTGATGATGAAGAGGAA+TGG 0.571443 4_2:+50746783 Msa0604980:CDS
TATATCAATGATAAAATGGT+AGG 0.571576 4_2:+50744297 Msa0604980:CDS
CCTGAATGGACCTCTAATGT+TGG 0.571638 4_2:+50743405 Msa0604980:CDS
GGAATCCATGTCAGTGCTAG+AGG 0.576033 4_2:-50744162 None:intergenic
TCCATTCACCATTGAGCCAG+AGG 0.576842 4_2:-50746552 None:intergenic
ACTGGTGGATTTGTTGCAGG+AGG 0.579516 4_2:+50746149 Msa0604980:CDS
GTTTACCTCTAGCACTGACA+TGG 0.580401 4_2:+50744157 Msa0604980:CDS
TTGCTCGTTCGCAATATACA+TGG 0.581173 4_2:+50746881 Msa0604980:CDS
ATCCTCCAACTTAGGTACTG+AGG 0.587825 4_2:-50746228 None:intergenic
CACTATCAAATGGTGTCCAA+AGG 0.587917 4_2:-50742750 None:intergenic
ACCGTGCTTGATTCTGTCCA+AGG 0.587988 4_2:+50746095 Msa0604980:CDS
CAGGTTACCGCGAAGTGTCG+AGG 0.588688 4_2:+50743304 Msa0604980:CDS
TTTCAGAAGCTGAACTAAGA+GGG 0.591675 4_2:+50744640 Msa0604980:CDS
AGATTTGAAGGAATGTGTAG+AGG 0.591944 4_2:+50746826 Msa0604980:CDS
ATTCTTCTATACCGATGTGA+AGG 0.593072 4_2:+50744401 Msa0604980:CDS
AGTTGAAAACAACCTACAGA+TGG 0.595183 4_2:-50746704 None:intergenic
AAGAGAATATGCAGACAACA+TGG 0.598011 4_2:+50746011 Msa0604980:CDS
GAACTCCCTATCATATTGAT+CGG 0.598238 4_2:-50744549 None:intergenic
TTCAAGTTCGATCCATCTGT+AGG 0.601990 4_2:+50746692 Msa0604980:CDS
ACTTTATTTATCTTGCGCGA+TGG 0.602825 4_2:-50746047 None:intergenic
CTCTCATCAAGTGACCAACT+AGG 0.606095 4_2:-50743144 None:intergenic
GACAACATGGAATTTCAAGA+TGG 0.607708 4_2:+50746024 Msa0604980:CDS
ATATTCCTCAAAGGAGAGGG+GGG 0.613156 4_2:+50742720 Msa0604980:CDS
GGTGTCAAAGCTAACTATAG+AGG 0.613947 4_2:+50746656 Msa0604980:CDS
GGAAGACCAATATTCCTCAA+AGG 0.615335 4_2:+50742711 Msa0604980:CDS
GCAACAAATCCACCAGTGTG+AGG 0.619119 4_2:-50746143 None:intergenic
TCTGAACATCATCTTGAGGA+AGG 0.620522 4_2:+50744339 Msa0604980:CDS
GAAATTGGTGGAAATTACAA+TGG 0.620723 4_2:+50742964 Msa0604980:CDS
CATCATCTTGAGGAAGGACA+AGG 0.623347 4_2:+50744345 Msa0604980:CDS
TTCAAGAACATAATCTACAG+AGG 0.626110 4_2:-50746375 None:intergenic
CAACAAATCCACCAGTGTGA+GGG 0.632421 4_2:-50746142 None:intergenic
TTTCGCGCGTGATGAACAAG+CGG 0.638493 4_2:-50744444 None:intergenic
ACTTTGATAGCTATGCTGGT+TGG 0.641227 4_2:+50742830 Msa0604980:CDS
TTTCCTTCACTATAACAACA+TGG 0.644491 4_2:-50744183 None:intergenic
TATTCCTCAAAGGAGAGGGG+GGG 0.646481 4_2:+50742721 Msa0604980:CDS
CAATATTCCTCAAAGGAGAG+GGG 0.647996 4_2:+50742718 Msa0604980:CDS
ATGTTCTGAACATCATCTTG+AGG 0.650977 4_2:+50744335 Msa0604980:CDS
ACTCCTTAGCCTAATTGCAA+CGG 0.651625 4_2:-50744484 None:intergenic
ACTTGAACTTGTCACTACAA+AGG 0.651739 4_2:+50743542 Msa0604980:CDS
AATATTCCTCAAAGGAGAGG+GGG 0.653283 4_2:+50742719 Msa0604980:CDS
TCTTGTTTCTAATTCATGTG+AGG 0.659934 4_2:+50746259 Msa0604980:CDS
TCCTTGGACAGAATCAAGCA+CGG 0.660179 4_2:-50746096 None:intergenic
AGATCATGCGATTAGTCACG+AGG 0.673342 4_2:+50743458 Msa0604980:CDS
GTATTGAAGATTCAACAACA+TGG 0.706035 4_2:+50746318 Msa0604980:CDS
CTCGTTCGCAATATACATGG+CGG 0.709197 4_2:+50746884 Msa0604980:CDS
TCTCAGATAGCGTTTAGTAG+CGG 0.712734 4_2:+50744732 Msa0604980:CDS
AACATCATAAGCCTTCACAT+CGG 0.714348 4_2:-50744412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAATTATAACACAATA+TGG - chr4_2:50743922-50743941 None:intergenic 15.0%
!! ATTTCACATTAAATTCTAAA+AGG - chr4_2:50744866-50744885 None:intergenic 15.0%
!!! TTGCTATTTTTAATGTATTT+TGG + chr4_2:50745280-50745299 Msa0604980:intron 15.0%
!! AAATTACTACAAATGTTAAA+AGG - chr4_2:50745313-50745332 None:intergenic 15.0%
!!! TTTGTAGTAATTTTTCTTAT+AGG + chr4_2:50745320-50745339 Msa0604980:intron 15.0%
!!! AAAAGATTTAAGTTACAAAA+TGG + chr4_2:50746743-50746762 Msa0604980:CDS 15.0%
!! AATTTAGATTCACAACAAAA+TGG + chr4_2:50743084-50743103 Msa0604980:CDS 20.0%
!! TCTAATTCTTTGTCAAAATT+AGG - chr4_2:50743573-50743592 None:intergenic 20.0%
!! ACAAGAAAAATCAAAGTATA+TGG - chr4_2:50743643-50743662 None:intergenic 20.0%
!! TTTAACCATAAGAATGAAAT+AGG - chr4_2:50743669-50743688 None:intergenic 20.0%
!! TAATCCATTCAATCAAATTA+TGG + chr4_2:50743844-50743863 Msa0604980:intron 20.0%
!!! TTAACTTTTCTTAGTAATTG+AGG - chr4_2:50743877-50743896 None:intergenic 20.0%
!! AAAATGATATATCCGAAATT+CGG - chr4_2:50744026-50744045 None:intergenic 20.0%
!! TTGCTATATCAATGATAAAA+TGG + chr4_2:50744293-50744312 Msa0604980:CDS 20.0%
!! TATATCAATGATAAAATGGT+AGG + chr4_2:50744297-50744316 Msa0604980:CDS 20.0%
!! CAAAGTTAAAAGATAAATCA+AGG - chr4_2:50745247-50745266 None:intergenic 20.0%
!! ACATTAAAAATAGCAACAAA+AGG - chr4_2:50745276-50745295 None:intergenic 20.0%
!!! ATTAACTCAGCTTATTATTT+TGG + chr4_2:50745521-50745540 Msa0604980:intron 20.0%
!!! TTAACTCAGCTTATTATTTT+GGG + chr4_2:50745522-50745541 Msa0604980:intron 20.0%
!!! AAATGTATATAAGTTGGAAT+TGG - chr4_2:50745841-50745860 None:intergenic 20.0%
!! TTTATTGACAAGAATTAACT+AGG - chr4_2:50745928-50745947 None:intergenic 20.0%
! AATTTAGCTGAACACATAAA+TGG + chr4_2:50742925-50742944 Msa0604980:CDS 25.0%
! CCAATTTCTGTCATAAAAAA+TGG - chr4_2:50742952-50742971 None:intergenic 25.0%
!!! CCATTTTTTATGACAGAAAT+TGG + chr4_2:50742949-50742968 Msa0604980:CDS 25.0%
!!! TTTTTTATGACAGAAATTGG+TGG + chr4_2:50742952-50742971 Msa0604980:CDS 25.0%
!! AAATGTGCTATTACAAGAAA+TGG + chr4_2:50743014-50743033 Msa0604980:CDS 25.0%
!! AGCTTTTGATCTAACAAATA+TGG - chr4_2:50743282-50743301 None:intergenic 25.0%
!! TTTTCTGCAGAAATGAAAAT+GGG + chr4_2:50743336-50743355 Msa0604980:CDS 25.0%
! AGAAAAATCAAAGTATATGG+TGG - chr4_2:50743640-50743659 None:intergenic 25.0%
!! GTTTTCCTATTTCATTCTTA+TGG + chr4_2:50743661-50743680 Msa0604980:intron 25.0%
! GCATATTATGAGAAACAAAT+TGG - chr4_2:50743725-50743744 None:intergenic 25.0%
! ATTGCGATTAAATCAAACAA+AGG + chr4_2:50743762-50743781 Msa0604980:intron 25.0%
! AAATGATATATCCGAAATTC+GGG - chr4_2:50744025-50744044 None:intergenic 25.0%
! ACACACTGCATAAAAAAAAA+GGG - chr4_2:50744069-50744088 None:intergenic 25.0%
! TACACACTGCATAAAAAAAA+AGG - chr4_2:50744070-50744089 None:intergenic 25.0%
! TTTCATTAGAACTTGTCATA+TGG - chr4_2:50744245-50744264 None:intergenic 25.0%
! TTCTCAATATGAGTTTCAAA+AGG + chr4_2:50744671-50744690 Msa0604980:CDS 25.0%
!!! CTTGATTTCCACTATTTTTT+AGG - chr4_2:50744797-50744816 None:intergenic 25.0%
! TGAAACATATGCTTCTTAAA+TGG - chr4_2:50744896-50744915 None:intergenic 25.0%
!!! TTTCAAGTTATTGTGTATCA+TGG + chr4_2:50744911-50744930 Msa0604980:intron 25.0%
!!! CTGATTAAGTTTTTTTCGTA+TGG - chr4_2:50744980-50744999 None:intergenic 25.0%
! CGATATTTGATTACAAAGTT+TGG + chr4_2:50745008-50745027 Msa0604980:intron 25.0%
!! TCTGTTATCACTGAAATTTT+AGG + chr4_2:50745073-50745092 Msa0604980:intron 25.0%
!! CTGTTATCACTGAAATTTTA+GGG + chr4_2:50745074-50745093 Msa0604980:intron 25.0%
! ATAGCAAATTAAGTGTGATA+TGG - chr4_2:50745198-50745217 None:intergenic 25.0%
!!! TATCACACTTAATTTGCTAT+AGG + chr4_2:50745198-50745217 Msa0604980:intron 25.0%
!!! ATCACACTTAATTTGCTATA+GGG + chr4_2:50745199-50745218 Msa0604980:intron 25.0%
! AAAGATGCTGCAAAAAAAAT+TGG + chr4_2:50745441-50745460 Msa0604980:CDS 25.0%
! AAGATGCTGCAAAAAAAATT+GGG + chr4_2:50745442-50745461 Msa0604980:CDS 25.0%
! TTTATATGTTTACTTAGAGC+AGG - chr4_2:50745643-50745662 None:intergenic 25.0%
! TGGTGAAAATGTATATAAGT+TGG - chr4_2:50745847-50745866 None:intergenic 25.0%
! AAAAAGAACAAGATCAATGT+GGG + chr4_2:50746396-50746415 Msa0604980:CDS 25.0%
!!! TCTTTTTCAATGATTGAACT+TGG + chr4_2:50746458-50746477 Msa0604980:CDS 25.0%
! CTTTTCATTCCACTATCAAA+TGG - chr4_2:50742763-50742782 None:intergenic 30.0%
! AACATGTCATCTGAAGTTAA+TGG - chr4_2:50742787-50742806 None:intergenic 30.0%
CTTTCATCATTTGCATATGA+TGG + chr4_2:50742898-50742917 Msa0604980:CDS 30.0%
GAAATTGGTGGAAATTACAA+TGG + chr4_2:50742964-50742983 Msa0604980:CDS 30.0%
! CACATTTTCATCATAACTAG+TGG - chr4_2:50743001-50743020 None:intergenic 30.0%
TGATATCAAAATCACCTAGT+TGG + chr4_2:50743130-50743149 Msa0604980:CDS 30.0%
! GTTTTCTGCAGAAATGAAAA+TGG + chr4_2:50743335-50743354 Msa0604980:CDS 30.0%
ATGATAGTAACCAACATTAG+AGG - chr4_2:50743418-50743437 None:intergenic 30.0%
TCAGAGTTCATATCAGATAT+AGG - chr4_2:50743504-50743523 None:intergenic 30.0%
AAATCAAACAAAGGCTACTT+TGG + chr4_2:50743771-50743790 Msa0604980:intron 30.0%
TCCATTCAATCAAATTATGG+TGG + chr4_2:50743847-50743866 Msa0604980:intron 30.0%
! ATTTTCTGATTCCCGAATTT+CGG + chr4_2:50744011-50744030 Msa0604980:intron 30.0%
ATTCCATGTTGTTATAGTGA+AGG + chr4_2:50744180-50744199 Msa0604980:CDS 30.0%
TTTCCTTCACTATAACAACA+TGG - chr4_2:50744186-50744205 None:intergenic 30.0%
TGTTGTTATAGTGAAGGAAA+AGG + chr4_2:50744186-50744205 Msa0604980:CDS 30.0%
ATCAATGATAAAATGGTAGG+AGG + chr4_2:50744300-50744319 Msa0604980:CDS 30.0%
TTTCTTCCGATCAATATGAT+AGG + chr4_2:50744543-50744562 Msa0604980:CDS 30.0%
TTCTTCCGATCAATATGATA+GGG + chr4_2:50744544-50744563 Msa0604980:CDS 30.0%
ACAATTTGTCAGATACTATG+AGG + chr4_2:50744592-50744611 Msa0604980:CDS 30.0%
TTTCAAAAGGAAAATGTCTC+AGG + chr4_2:50744684-50744703 Msa0604980:CDS 30.0%
!!! AGGTTTTTTTCCTATGTCTA+GGG + chr4_2:50744704-50744723 Msa0604980:CDS 30.0%
GAAACGAACCTAAAAAATAG+TGG + chr4_2:50744786-50744805 Msa0604980:CDS 30.0%
!!! TGGTTTACTTTTTTGAACCA+GGG - chr4_2:50744960-50744979 None:intergenic 30.0%
!!! ATGGTTTACTTTTTTGAACC+AGG - chr4_2:50744961-50744980 None:intergenic 30.0%
!!! ACTGAAATTTTAGGGTATAC+AGG + chr4_2:50745082-50745101 Msa0604980:intron 30.0%
!!! AAATTTTAGGGTATACAGGA+TGG + chr4_2:50745086-50745105 Msa0604980:intron 30.0%
TAACCAACAGAATGAAATCT+GGG + chr4_2:50745158-50745177 Msa0604980:intron 30.0%
!! TCACACTTAATTTGCTATAG+GGG + chr4_2:50745200-50745219 Msa0604980:intron 30.0%
ACTACAAATGTTAAAAGGCA+TGG - chr4_2:50745308-50745327 None:intergenic 30.0%
! TTTTTCTTATAGGCAACAAG+TGG + chr4_2:50745330-50745349 Msa0604980:intron 30.0%
AGATGCTGCAAAAAAAATTG+GGG + chr4_2:50745443-50745462 Msa0604980:CDS 30.0%
!!! CTTATTATTTTGGGTTGTGT+TGG + chr4_2:50745531-50745550 Msa0604980:intron 30.0%
TGCAACTCTTAAACTTATGA+TGG - chr4_2:50745595-50745614 None:intergenic 30.0%
AAGACACAAACGATTGATAA+CGG + chr4_2:50745670-50745689 Msa0604980:intron 30.0%
! CTTTTTGGATATGTTGAGTA+TGG - chr4_2:50745792-50745811 None:intergenic 30.0%
ATCCAAAAAGTCTTACCATT+TGG + chr4_2:50745802-50745821 Msa0604980:intron 30.0%
GAAAATATCATGAACAACCA+AGG - chr4_2:50745882-50745901 None:intergenic 30.0%
TATTATGCGTACCAATTTGT+TGG - chr4_2:50746184-50746203 None:intergenic 30.0%
!! TCTTGTTTCTAATTCATGTG+AGG + chr4_2:50746259-50746278 Msa0604980:CDS 30.0%
GTATTGAAGATTCAACAACA+TGG + chr4_2:50746318-50746337 Msa0604980:CDS 30.0%
! TAATCTACAGAGGTTTGTTT+AGG - chr4_2:50746368-50746387 None:intergenic 30.0%
TTCAAGAACATAATCTACAG+AGG - chr4_2:50746378-50746397 None:intergenic 30.0%
GAAAAAGAACAAGATCAATG+TGG + chr4_2:50746395-50746414 Msa0604980:CDS 30.0%
! AATAGTAGTTTGCATGATGT+TGG + chr4_2:50746425-50746444 Msa0604980:CDS 30.0%
TTCAATGATTGAACTTGGTT+TGG + chr4_2:50746463-50746482 Msa0604980:CDS 30.0%
GTCGATAGTGAATCAAAATT+CGG + chr4_2:50746635-50746654 Msa0604980:CDS 30.0%
! ATGAACTTTGATAGCTATGC+TGG + chr4_2:50742826-50742845 Msa0604980:CDS 35.0%
TGGTGGAAATTACAATGGTA+TGG + chr4_2:50742969-50742988 Msa0604980:CDS 35.0%
GAGTGCTTTATCCTTCTTTA+AGG + chr4_2:50743173-50743192 Msa0604980:CDS 35.0%
AGGAATACTAGCACAAGTTT+GGG + chr4_2:50743209-50743228 Msa0604980:CDS 35.0%
AGGTCATCACCATACTTTAT+AGG - chr4_2:50743237-50743256 None:intergenic 35.0%
ATGGTTGATCACTTGTAGTT+AGG - chr4_2:50743263-50743282 None:intergenic 35.0%
TTGTTAGATCAAAAGCTTGC+AGG + chr4_2:50743285-50743304 Msa0604980:CDS 35.0%
ACTTGAACTTGTCACTACAA+AGG + chr4_2:50743542-50743561 Msa0604980:CDS 35.0%
! ATTTGTTTCTCATGCACTTC+AGG + chr4_2:50743593-50743612 Msa0604980:CDS 35.0%
! AAAGGCTACTTTGGCAAAAT+TGG + chr4_2:50743780-50743799 Msa0604980:intron 35.0%
GCCACCATAATTTGATTGAA+TGG - chr4_2:50743851-50743870 None:intergenic 35.0%
GAGCGAATACGAATTAAAGA+AGG + chr4_2:50744219-50744238 Msa0604980:CDS 35.0%
! ATGTTCTGAACATCATCTTG+AGG + chr4_2:50744335-50744354 Msa0604980:CDS 35.0%
TTCACATCGGTATAGAAGAA+TGG - chr4_2:50744402-50744421 None:intergenic 35.0%
ATTCTTCTATACCGATGTGA+AGG + chr4_2:50744401-50744420 Msa0604980:CDS 35.0%
AACATCATAAGCCTTCACAT+CGG - chr4_2:50744415-50744434 None:intergenic 35.0%
GAACTCCCTATCATATTGAT+CGG - chr4_2:50744552-50744571 None:intergenic 35.0%
GGAGAATTTGTAAGAGTTTG+AGG + chr4_2:50744613-50744632 Msa0604980:CDS 35.0%
TTTCAGAAGCTGAACTAAGA+GGG + chr4_2:50744640-50744659 Msa0604980:CDS 35.0%
!!! CAGGTTTTTTTCCTATGTCT+AGG + chr4_2:50744703-50744722 Msa0604980:CDS 35.0%
!!! GGTTTTTTTCCTATGTCTAG+GGG + chr4_2:50744705-50744724 Msa0604980:CDS 35.0%
! ATGACATCTGGAATAAATCC+TGG - chr4_2:50744761-50744780 None:intergenic 35.0%
GTAACCAACAGAATGAAATC+TGG + chr4_2:50745157-50745176 Msa0604980:intron 35.0%
AACCAACAGAATGAAATCTG+GGG + chr4_2:50745159-50745178 Msa0604980:intron 35.0%
! GTTCTCCAACAATACTTTTC+TGG + chr4_2:50745411-50745430 Msa0604980:CDS 35.0%
!! GACTACCAGAAAAGTATTGT+TGG - chr4_2:50745419-50745438 None:intergenic 35.0%
GATGCTGCAAAAAAAATTGG+GGG + chr4_2:50745444-50745463 Msa0604980:CDS 35.0%
! AATTTAGAGTTGACCCATTG+AGG + chr4_2:50745555-50745574 Msa0604980:intron 35.0%
! ATTTAGAGTTGACCCATTGA+GGG + chr4_2:50745556-50745575 Msa0604980:intron 35.0%
GCTCTTATTCACAGATAAGT+GGG - chr4_2:50745770-50745789 None:intergenic 35.0%
! GTCCAAATGGTAAGACTTTT+TGG - chr4_2:50745807-50745826 None:intergenic 35.0%
AACCAAGGATGTTATGAACT+TGG - chr4_2:50745867-50745886 None:intergenic 35.0%
CAAGAATTAACTAGGTGAGA+GGG - chr4_2:50745920-50745939 None:intergenic 35.0%
ACAAGAATTAACTAGGTGAG+AGG - chr4_2:50745921-50745940 None:intergenic 35.0%
CATATTCTCTTCAGAGTTGT+TGG - chr4_2:50746002-50746021 None:intergenic 35.0%
AAGAGAATATGCAGACAACA+TGG + chr4_2:50746011-50746030 Msa0604980:CDS 35.0%
GACAACATGGAATTTCAAGA+TGG + chr4_2:50746024-50746043 Msa0604980:CDS 35.0%
! ACTTTATTTATCTTGCGCGA+TGG - chr4_2:50746050-50746069 None:intergenic 35.0%
GGTTCAATCATCCAACAAAT+TGG + chr4_2:50746170-50746189 Msa0604980:CDS 35.0%
TAATTCATGTGAGGCAGAAT+TGG + chr4_2:50746268-50746287 Msa0604980:CDS 35.0%
TTCAATACAGTCAACAGGAA+TGG - chr4_2:50746306-50746325 None:intergenic 35.0%
GAATCTTCAATACAGTCAAC+AGG - chr4_2:50746311-50746330 None:intergenic 35.0%
AAGATTCAACAACATGGCTT+TGG + chr4_2:50746324-50746343 Msa0604980:CDS 35.0%
!! ATTGAACTTGGTTTGGAAGA+AGG + chr4_2:50746470-50746489 Msa0604980:CDS 35.0%
!!! ATTTGATTTTCGAGTGCTTC+TGG - chr4_2:50746607-50746626 None:intergenic 35.0%
AGTTGAAAACAACCTACAGA+TGG - chr4_2:50746707-50746726 None:intergenic 35.0%
CATCATCAAGATACTTGAGT+TGG - chr4_2:50746775-50746794 None:intergenic 35.0%
!! CAAGTATCTTGATGATGAAG+AGG + chr4_2:50746778-50746797 Msa0604980:CDS 35.0%
!! ATCTTGATGATGAAGAGGAA+TGG + chr4_2:50746783-50746802 Msa0604980:CDS 35.0%
!! TCTTGATGATGAAGAGGAAT+GGG + chr4_2:50746784-50746803 Msa0604980:CDS 35.0%
AGATTTGAAGGAATGTGTAG+AGG + chr4_2:50746826-50746845 Msa0604980:CDS 35.0%
GGAAGACCAATATTCCTCAA+AGG + chr4_2:50742711-50742730 Msa0604980:CDS 40.0%
ACCAATATTCCTCAAAGGAG+AGG + chr4_2:50742716-50742735 Msa0604980:CDS 40.0%
CCAATATTCCTCAAAGGAGA+GGG + chr4_2:50742717-50742736 Msa0604980:CDS 40.0%
CAATATTCCTCAAAGGAGAG+GGG + chr4_2:50742718-50742737 Msa0604980:CDS 40.0%
AATATTCCTCAAAGGAGAGG+GGG + chr4_2:50742719-50742738 Msa0604980:CDS 40.0%
CACTATCAAATGGTGTCCAA+AGG - chr4_2:50742753-50742772 None:intergenic 40.0%
CTTTGGACACCATTTGATAG+TGG + chr4_2:50742751-50742770 Msa0604980:CDS 40.0%
! ACTTTGATAGCTATGCTGGT+TGG + chr4_2:50742830-50742849 Msa0604980:CDS 40.0%
! TCCTTCTTTAAGGAATCAGC+TGG + chr4_2:50743183-50743202 Msa0604980:CDS 40.0%
! ACCAGCTGATTCCTTAAAGA+AGG - chr4_2:50743187-50743206 None:intergenic 40.0%
! TTCTTTAAGGAATCAGCTGG+TGG + chr4_2:50743186-50743205 Msa0604980:CDS 40.0%
GAGGAATACTAGCACAAGTT+TGG + chr4_2:50743208-50743227 Msa0604980:CDS 40.0%
GTTTGGGCACCTATAAAGTA+TGG + chr4_2:50743225-50743244 Msa0604980:CDS 40.0%
GATCACTTGTAGTTAGGATG+AGG - chr4_2:50743257-50743276 None:intergenic 40.0%
! AAAATGGGATCTTGTTGTCC+TGG + chr4_2:50743351-50743370 Msa0604980:CDS 40.0%
TTAACTCGCATGTTCCTGAA+TGG + chr4_2:50743391-50743410 Msa0604980:CDS 40.0%
ATTACCTGTGGAAGAAGTCT+TGG - chr4_2:50743993-50744012 None:intergenic 40.0%
GGGAATCAGAAAATTACCTG+TGG - chr4_2:50744005-50744024 None:intergenic 40.0%
TCTGAACATCATCTTGAGGA+AGG + chr4_2:50744339-50744358 Msa0604980:CDS 40.0%
ACTCCTTAGCCTAATTGCAA+CGG - chr4_2:50744487-50744506 None:intergenic 40.0%
GTTTCAGAAGCTGAACTAAG+AGG + chr4_2:50744639-50744658 Msa0604980:CDS 40.0%
TCTCAGATAGCGTTTAGTAG+CGG + chr4_2:50744732-50744751 Msa0604980:CDS 40.0%
TCGTTTCGTTGAATGACATC+TGG - chr4_2:50744773-50744792 None:intergenic 40.0%
AAATCAAGCTGCTTACAGTC+AGG + chr4_2:50744809-50744828 Msa0604980:CDS 40.0%
TGGTTTACTGATAAGGAAGC+AGG - chr4_2:50745123-50745142 None:intergenic 40.0%
TGCTTCCTTATCAGTAAACC+AGG + chr4_2:50745122-50745141 Msa0604980:intron 40.0%
CAACTCCTGGTTTACTGATA+AGG - chr4_2:50745130-50745149 None:intergenic 40.0%
GGTTACAAACTTACAACTCC+TGG - chr4_2:50745143-50745162 None:intergenic 40.0%
ACCAACAGAATGAAATCTGG+GGG + chr4_2:50745160-50745179 Msa0604980:intron 40.0%
!! CTTAATTTGCTATAGGGGAG+TGG + chr4_2:50745205-50745224 Msa0604980:intron 40.0%
AACAAGTGGTTCAAGAAAGC+AGG + chr4_2:50745344-50745363 Msa0604980:CDS 40.0%
GTCAGAGACGTAAGCAAAAT+TGG - chr4_2:50745703-50745722 None:intergenic 40.0%
GGCTCTTATTCACAGATAAG+TGG - chr4_2:50745771-50745790 None:intergenic 40.0%
CACCAAGTTCATAACATCCT+TGG + chr4_2:50745862-50745881 Msa0604980:intron 40.0%
!!! TAGGTACTGAGGTTTTCTCA+GGG - chr4_2:50746220-50746239 None:intergenic 40.0%
!!! TTAGGTACTGAGGTTTTCTC+AGG - chr4_2:50746221-50746240 None:intergenic 40.0%
GAAAACCTCAGTACCTAAGT+TGG + chr4_2:50746223-50746242 Msa0604980:CDS 40.0%
ACATCTTCATCCTCCAACTT+AGG - chr4_2:50746239-50746258 None:intergenic 40.0%
AGAACAAGATCAATGTGGGT+TGG + chr4_2:50746400-50746419 Msa0604980:CDS 40.0%
!! CTTGGTTTGGAAGAAGGAAA+AGG + chr4_2:50746476-50746495 Msa0604980:CDS 40.0%
ATGGTGAATGGAAGTTCATC+AGG + chr4_2:50746563-50746582 Msa0604980:CDS 40.0%
GGTGTCAAAGCTAACTATAG+AGG + chr4_2:50746656-50746675 Msa0604980:CDS 40.0%
! TTCAAGTTCGATCCATCTGT+AGG + chr4_2:50746692-50746711 Msa0604980:CDS 40.0%
GGTGAATGACTCAGATTTGA+AGG + chr4_2:50746814-50746833 Msa0604980:CDS 40.0%
!!! GTAGAGGTTTTGAGTGACAT+TGG + chr4_2:50746842-50746861 Msa0604980:CDS 40.0%
TTGCTCGTTCGCAATATACA+TGG + chr4_2:50746881-50746900 Msa0604980:CDS 40.0%
! CCCTCTCCTTTGAGGAATAT+TGG - chr4_2:50742720-50742739 None:intergenic 45.0%
ATATTCCTCAAAGGAGAGGG+GGG + chr4_2:50742720-50742739 Msa0604980:CDS 45.0%
CTCTCATCAAGTGACCAACT+AGG - chr4_2:50743147-50743166 None:intergenic 45.0%
TTTAAGGAATCAGCTGGTGG+AGG + chr4_2:50743189-50743208 Msa0604980:CDS 45.0%
CCAACATTAGAGGTCCATTC+AGG - chr4_2:50743408-50743427 None:intergenic 45.0%
CCTGAATGGACCTCTAATGT+TGG + chr4_2:50743405-50743424 Msa0604980:CDS 45.0%
! AGATCATGCGATTAGTCACG+AGG + chr4_2:50743458-50743477 Msa0604980:CDS 45.0%
GTTTCTCATGCACTTCAGGT+TGG + chr4_2:50743597-50743616 Msa0604980:intron 45.0%
TTACGCAGCGTGTGAATCTA+AGG + chr4_2:50743955-50743974 Msa0604980:intron 45.0%
!! GTTTACCTCTAGCACTGACA+TGG + chr4_2:50744157-50744176 Msa0604980:CDS 45.0%
CATCATCTTGAGGAAGGACA+AGG + chr4_2:50744345-50744364 Msa0604980:CDS 45.0%
GAGGAAGGACAAGGTATATC+TGG + chr4_2:50744354-50744373 Msa0604980:CDS 45.0%
TGAATGCTGCCGTTGCAATT+AGG + chr4_2:50744475-50744494 Msa0604980:CDS 45.0%
GCTGAACTAAGAGGGATAGA+AGG + chr4_2:50744648-50744667 Msa0604980:CDS 45.0%
AGAACTCTGAACATCAACCC+TGG + chr4_2:50744940-50744959 Msa0604980:intron 45.0%
TCCCCCAGATTTCATTCTGT+TGG - chr4_2:50745164-50745183 None:intergenic 45.0%
AACAGAATGAAATCTGGGGG+AGG + chr4_2:50745163-50745182 Msa0604980:intron 45.0%
ACAGAATGAAATCTGGGGGA+GGG + chr4_2:50745164-50745183 Msa0604980:intron 45.0%
GAAAGCAGGCTGAGAAAAAG+AGG + chr4_2:50745358-50745377 Msa0604980:CDS 45.0%
!! TGAGAAAAAGAGGAGTGCTG+TGG + chr4_2:50745368-50745387 Msa0604980:CDS 45.0%
! GGAGAGTGTATGAGTCCAAA+TGG - chr4_2:50745820-50745839 None:intergenic 45.0%
TCCTTGGACAGAATCAAGCA+CGG - chr4_2:50746099-50746118 None:intergenic 45.0%
GATTCTGTCCAAGGAGTTGA+AGG + chr4_2:50746104-50746123 Msa0604980:CDS 45.0%
TCAGAACTCCTTCAACTCCT+TGG - chr4_2:50746115-50746134 None:intergenic 45.0%
CTGAAATTTGACCCTCACAC+TGG + chr4_2:50746131-50746150 Msa0604980:CDS 45.0%
AAATTTGACCCTCACACTGG+TGG + chr4_2:50746134-50746153 Msa0604980:CDS 45.0%
CAACAAATCCACCAGTGTGA+GGG - chr4_2:50746145-50746164 None:intergenic 45.0%
! AACCTCAGTACCTAAGTTGG+AGG + chr4_2:50746226-50746245 Msa0604980:CDS 45.0%
! ATCCTCCAACTTAGGTACTG+AGG - chr4_2:50746231-50746250 None:intergenic 45.0%
!! ATGGCTTTGGACAAAGACTC+AGG + chr4_2:50746337-50746356 Msa0604980:CDS 45.0%
!! TTGCATGATGTTGGCTCTCA+TGG + chr4_2:50746434-50746453 Msa0604980:CDS 45.0%
CGGTCATGCTTGAAGAAGTA+GGG - chr4_2:50746520-50746539 None:intergenic 45.0%
TCGGTCATGCTTGAAGAAGT+AGG - chr4_2:50746521-50746540 None:intergenic 45.0%
TGAAGAGGAATGGGTGATGT+TGG + chr4_2:50746793-50746812 Msa0604980:CDS 45.0%
CTCGTTCGCAATATACATGG+CGG + chr4_2:50746884-50746903 Msa0604980:CDS 45.0%
TATTCCTCAAAGGAGAGGGG+GGG + chr4_2:50742721-50742740 Msa0604980:CDS 50.0%
! AGCTATGCTGGTTGGTGCAA+TGG + chr4_2:50742838-50742857 Msa0604980:CDS 50.0%
TAAACGACCTCGACACTTCG+CGG - chr4_2:50743314-50743333 None:intergenic 50.0%
! TCTTGTTGTCCTGGACTTCC+TGG + chr4_2:50743360-50743379 Msa0604980:CDS 50.0%
ACCTGTGGAAGAAGTCTTGG+AGG - chr4_2:50743990-50744009 None:intergenic 50.0%
GGAATCCATGTCAGTGCTAG+AGG - chr4_2:50744165-50744184 None:intergenic 50.0%
TTTCGCGCGTGATGAACAAG+CGG - chr4_2:50744447-50744466 None:intergenic 50.0%
CTGCCGTTGCAATTAGGCTA+AGG + chr4_2:50744481-50744500 Msa0604980:CDS 50.0%
TGAGAGTTGCCCCTAGACAT+AGG - chr4_2:50744717-50744736 None:intergenic 50.0%
CAGTCGAGGCGTGGAATAAT+TGG - chr4_2:50745034-50745053 None:intergenic 50.0%
CAGAATGAAATCTGGGGGAG+GGG + chr4_2:50745165-50745184 Msa0604980:intron 50.0%
AGAATGAAATCTGGGGGAGG+GGG + chr4_2:50745166-50745185 Msa0604980:intron 50.0%
! TTGACCCATTGAGGGTGTGA+GGG + chr4_2:50745564-50745583 Msa0604980:intron 50.0%
CACAGATAAGTGGGCAGATG+CGG - chr4_2:50745761-50745780 None:intergenic 50.0%
ACCGTGCTTGATTCTGTCCA+AGG + chr4_2:50746095-50746114 Msa0604980:CDS 50.0%
GCAACAAATCCACCAGTGTG+AGG - chr4_2:50746146-50746165 None:intergenic 50.0%
!! CACACTGGTGGATTTGTTGC+AGG + chr4_2:50746146-50746165 Msa0604980:CDS 50.0%
!! ACTGGTGGATTTGTTGCAGG+AGG + chr4_2:50746149-50746168 Msa0604980:CDS 50.0%
! ACCGATTCATCGAATGCCTC+TGG + chr4_2:50746536-50746555 Msa0604980:CDS 50.0%
!! GCCAGAGGCATTCGATGAAT+CGG - chr4_2:50746540-50746559 None:intergenic 50.0%
! ATCGAATGCCTCTGGCTCAA+TGG + chr4_2:50746544-50746563 Msa0604980:CDS 50.0%
TCCATTCACCATTGAGCCAG+AGG - chr4_2:50746555-50746574 None:intergenic 50.0%
TGCGAGTTAAACACGCGACC+AGG - chr4_2:50743381-50743400 None:intergenic 55.0%
! GCGATTAGTCACGAGGTTCG+AGG + chr4_2:50743465-50743484 Msa0604980:CDS 55.0%
GCCTCCAAGACTTCTTCCAC+AGG + chr4_2:50743986-50744005 Msa0604980:CDS 55.0%
AGCGTTTAGTAGCGGTGACC+AGG + chr4_2:50744740-50744759 Msa0604980:CDS 55.0%
ACTGCAGCGCTTTACAGTCG+AGG - chr4_2:50745048-50745067 None:intergenic 55.0%
GAATGAAATCTGGGGGAGGG+GGG + chr4_2:50745167-50745186 Msa0604980:intron 55.0%
GCTATAGGGGAGTGGAACAG+TGG + chr4_2:50745213-50745232 Msa0604980:intron 55.0%
! GTTGACCCATTGAGGGTGTG+AGG + chr4_2:50745563-50745582 Msa0604980:intron 55.0%
CCAACCCTCACACCCTCAAT+GGG - chr4_2:50745571-50745590 None:intergenic 55.0%
ACCAACCCTCACACCCTCAA+TGG - chr4_2:50745572-50745591 None:intergenic 55.0%
! GCCTCTGGCTCAATGGTGAA+TGG + chr4_2:50746551-50746570 Msa0604980:CDS 55.0%
GATTCCCCCCCTCTCCTTTG+AGG - chr4_2:50742728-50742747 None:intergenic 60.0%
AGAGGGGGGGAATCAGCCTT+TGG + chr4_2:50742734-50742753 Msa0604980:CDS 60.0%
!! CAGGTTACCGCGAAGTGTCG+AGG + chr4_2:50743304-50743323 Msa0604980:CDS 60.0%
AACACGCGACCAGGAAGTCC+AGG - chr4_2:50743372-50743391 None:intergenic 60.0%
AGCGCTTTACAGTCGAGGCG+TGG - chr4_2:50745043-50745062 None:intergenic 60.0%
! CCCATTGAGGGTGTGAGGGT+TGG + chr4_2:50745568-50745587 Msa0604980:intron 60.0%
GTGGGCAGATGCGGAGCAAG+TGG - chr4_2:50745752-50745771 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50742709 50746919 50742709 ID=Msa0604980;Name=Msa0604980
chr4_2 mRNA 50742709 50746919 50742709 ID=Msa0604980-mRNA-1;Parent=Msa0604980;Name=Msa0604980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.2|1|1|1|5|0|915
chr4_2 exon 50742709 50743614 50742709 ID=Msa0604980-mRNA-1:exon:11975;Parent=Msa0604980-mRNA-1
chr4_2 exon 50743963 50744007 50743963 ID=Msa0604980-mRNA-1:exon:11976;Parent=Msa0604980-mRNA-1
chr4_2 exon 50744084 50744830 50744084 ID=Msa0604980-mRNA-1:exon:11977;Parent=Msa0604980-mRNA-1
chr4_2 exon 50745342 50745465 50745342 ID=Msa0604980-mRNA-1:exon:11978;Parent=Msa0604980-mRNA-1
chr4_2 exon 50745994 50746919 50745994 ID=Msa0604980-mRNA-1:exon:11979;Parent=Msa0604980-mRNA-1
chr4_2 CDS 50742709 50743614 50742709 ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2 CDS 50743963 50744007 50743963 ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2 CDS 50744084 50744830 50744084 ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2 CDS 50745342 50745465 50745342 ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
chr4_2 CDS 50745994 50746919 50745994 ID=Msa0604980-mRNA-1:cds;Parent=Msa0604980-mRNA-1
Gene Sequence

>Msa0604980

ATGGAAGACCAATATTCCTCAAAGGAGAGGGGGGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTCCATTAACTTCAGATGACATGTTTAACAACATCTCTGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATGATGGATTGAATTTAGCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGGTATGGATAGTTCCACTAGTTATGATGAAAATGTGCTATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATCATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATGATATCAAAATCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACCTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTGTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTCCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGTTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCGATTAGTCACGAGGTTCGAGGATCGATTGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATCTAAGGACTATTATGCCTCCAAGACTTCTTCCACAGTGTGTATCAAATAACAAAAGAGCTGCGTTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTTTACCTCTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGAATTAAAGAAGGCCATATGACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACGAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATAGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTAGGGGCAACTCTCAGATAGCGTTTAGTAGCGGTGACCAGGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGCAACAAGTGGTTCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCTGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAAAATTGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGTTCAATCATCCAACAAATTGGTACGCATAATAAAACTCTCATGTTCCCTGAGAAAACCTCAGTACCTAAGTTGGAGGATGAAGATGTTCTTGTTTCTAATTCATGTGAGGCAGAATTGGAGAAAGACAATGCCATTCCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCTCTGTAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGTAGTTTGCATGATGTTGGCTCTCATGGTTCTTTTTCAATGATTGAACTTGGTTTGGAAGAAGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCGAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCAGGATCTCAAAGCATTGAGAACCAGAAGCACTCGAAAATCAAATCAATCTGTGTCGATAGTGAATCAAAATTCGGTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTCGATCCATCTGTAGGTTGTTTTCAACTCTATGAAGAAGTTGCAAAAAGATTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAGGTTTTGAGTGACATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA
Protein sequence

>Msa0604980

MEDQYSSKERGGISLWTPFDSGMKSPLTSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYDGLNLAEHINGPFFMTEIGGNYNGMDSSTSYDENVLLQEMETQLEFLDHNSNETNNNLDSQQNGSYDMCNYMISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDLILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCPGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSNNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHMTSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGIEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDQDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGTHNKTLMFPEKTSVPKLEDEDVLVSNSCEAELEKDNAIPVDCIEDSTTWLWTKTQDCPKQTSVDYVLEKEQDQCGLDNSSLHDVGSHGSFSMIELGLEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKIKSICVDSESKFGVKANYRGDTIRFKFDPSVGCFQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS*