Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685160 | XP_024636796.1 | 96.405 | 918 | 26 | 3 | 1 | 917 | 1 | 912 | 0.0 | 1835 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685160 | sp|O22864|NLP8_ARATH | 49.378 | 964 | 400 | 23 | 1 | 911 | 1 | 929 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685160 | G7JDS3 | 96.405 | 918 | 26 | 3 | 1 | 917 | 1 | 912 | 0.0 | 1835 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0685160 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604980 | Msa0685160 | 0.887150 | 1.836943e-72 | -8.615850e-47 |
| Msa0685160 | Msa0945460 | 0.896035 | 5.424928e-76 | -8.615850e-47 |
| Msa0542110 | Msa0685160 | 0.970063 | 4.741252e-131 | -8.615850e-47 |
| Msa0542150 | Msa0685160 | 0.961945 | 2.705029e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685160 | MtrunA17_Chr4g0033791 | 96.405 | 918 | 26 | 3 | 1 | 917 | 1 | 912 | 0.0 | 1835 |
| Msa0685160 | MtrunA17_Chr2g0329671 | 59.541 | 959 | 327 | 17 | 1 | 911 | 1 | 946 | 0.0 | 1067 |
| Msa0685160 | MtrunA17_Chr6g0472281 | 36.717 | 798 | 402 | 20 | 152 | 911 | 112 | 844 | 7.13e-138 | 432 |
| Msa0685160 | MtrunA17_Chr3g0143921 | 39.744 | 546 | 286 | 12 | 151 | 665 | 138 | 671 | 1.12e-116 | 378 |
| Msa0685160 | MtrunA17_Chr1g0203081 | 40.530 | 528 | 288 | 10 | 152 | 659 | 124 | 645 | 6.46e-113 | 370 |
| Msa0685160 | MtrunA17_Chr1g0203081 | 44.444 | 81 | 44 | 1 | 832 | 911 | 886 | 966 | 2.58e-15 | 80.9 |
| Msa0685160 | MtrunA17_Chr5g0448621 | 33.884 | 363 | 196 | 11 | 148 | 502 | 122 | 448 | 4.65e-46 | 179 |
| Msa0685160 | MtrunA17_Chr5g0448621 | 67.778 | 90 | 25 | 1 | 578 | 667 | 607 | 692 | 2.80e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685160 | AT2G43500.3 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.9 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.6 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.1 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.10 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.11 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.7 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.8 | 50.158 | 951 | 399 | 22 | 1 | 911 | 1 | 916 | 0.0 | 791 |
| Msa0685160 | AT2G43500.5 | 49.481 | 964 | 399 | 23 | 1 | 911 | 1 | 929 | 0.0 | 782 |
| Msa0685160 | AT2G43500.4 | 49.481 | 964 | 399 | 23 | 1 | 911 | 1 | 929 | 0.0 | 782 |
| Msa0685160 | AT2G43500.2 | 49.378 | 964 | 400 | 23 | 1 | 911 | 1 | 929 | 0.0 | 779 |
| Msa0685160 | AT3G59580.2 | 49.729 | 923 | 365 | 24 | 18 | 911 | 23 | 875 | 0.0 | 747 |
| Msa0685160 | AT3G59580.3 | 49.729 | 923 | 365 | 24 | 18 | 911 | 23 | 875 | 0.0 | 747 |
| Msa0685160 | AT3G59580.1 | 49.729 | 923 | 365 | 24 | 18 | 911 | 23 | 875 | 0.0 | 747 |
| Msa0685160 | AT1G64530.1 | 41.544 | 544 | 283 | 12 | 147 | 658 | 87 | 627 | 2.23e-119 | 384 |
| Msa0685160 | AT1G64530.1 | 45.679 | 81 | 42 | 2 | 832 | 911 | 744 | 823 | 1.81e-13 | 75.1 |
| Msa0685160 | AT1G20640.1 | 41.486 | 552 | 267 | 12 | 151 | 667 | 104 | 634 | 1.79e-118 | 381 |
| Msa0685160 | AT1G20640.3 | 41.486 | 552 | 267 | 12 | 151 | 667 | 104 | 634 | 1.79e-118 | 381 |
| Msa0685160 | AT1G20640.2 | 41.486 | 552 | 267 | 12 | 151 | 667 | 104 | 634 | 1.79e-118 | 381 |
| Msa0685160 | AT1G76350.2 | 41.887 | 530 | 266 | 12 | 150 | 654 | 104 | 616 | 2.74e-118 | 380 |
| Msa0685160 | AT1G76350.1 | 41.887 | 530 | 266 | 12 | 150 | 654 | 104 | 616 | 2.74e-118 | 380 |
| Msa0685160 | AT1G76350.4 | 41.887 | 530 | 266 | 12 | 150 | 654 | 104 | 616 | 2.74e-118 | 380 |
| Msa0685160 | AT1G76350.3 | 41.887 | 530 | 266 | 12 | 150 | 654 | 104 | 616 | 2.74e-118 | 380 |
| Msa0685160 | AT4G24020.1 | 39.685 | 572 | 299 | 14 | 117 | 658 | 107 | 662 | 6.81e-111 | 364 |
| Msa0685160 | AT4G24020.1 | 45.000 | 80 | 44 | 0 | 832 | 911 | 866 | 945 | 1.34e-16 | 85.5 |
| Msa0685160 | AT1G64530.2 | 42.702 | 459 | 229 | 12 | 224 | 658 | 24 | 472 | 1.79e-104 | 340 |
| Msa0685160 | AT1G64530.2 | 53.125 | 64 | 29 | 1 | 832 | 894 | 589 | 652 | 1.75e-13 | 75.1 |
| Msa0685160 | AT2G17150.1 | 37.329 | 584 | 289 | 14 | 145 | 665 | 117 | 686 | 3.11e-103 | 342 |
| Msa0685160 | AT2G17150.1 | 43.421 | 76 | 42 | 1 | 832 | 906 | 814 | 889 | 6.99e-12 | 70.1 |
| Msa0685160 | AT2G17150.6 | 37.329 | 584 | 289 | 14 | 145 | 665 | 117 | 686 | 3.11e-103 | 342 |
| Msa0685160 | AT2G17150.6 | 43.421 | 76 | 42 | 1 | 832 | 906 | 814 | 889 | 6.99e-12 | 70.1 |
| Msa0685160 | AT4G35270.2 | 35.452 | 598 | 292 | 19 | 145 | 665 | 146 | 726 | 2.90e-93 | 316 |
| Msa0685160 | AT4G35270.2 | 38.462 | 78 | 47 | 1 | 832 | 908 | 865 | 942 | 8.13e-11 | 66.6 |
| Msa0685160 | AT4G35270.1 | 35.452 | 598 | 292 | 19 | 145 | 665 | 146 | 726 | 2.90e-93 | 316 |
| Msa0685160 | AT4G35270.1 | 38.462 | 78 | 47 | 1 | 832 | 908 | 865 | 942 | 8.13e-11 | 66.6 |
| Msa0685160 | AT4G35270.3 | 35.452 | 598 | 292 | 19 | 145 | 665 | 146 | 726 | 2.90e-93 | 316 |
| Msa0685160 | AT4G35270.3 | 38.462 | 78 | 47 | 1 | 832 | 908 | 865 | 942 | 8.13e-11 | 66.6 |
| Msa0685160 | AT4G35270.4 | 35.452 | 598 | 292 | 19 | 145 | 665 | 146 | 726 | 2.90e-93 | 316 |
| Msa0685160 | AT4G35270.4 | 38.462 | 78 | 47 | 1 | 832 | 908 | 865 | 942 | 8.13e-11 | 66.6 |
| Msa0685160 | AT4G38340.2 | 36.207 | 522 | 261 | 14 | 147 | 658 | 39 | 498 | 1.37e-84 | 286 |
| Msa0685160 | AT4G38340.1 | 35.577 | 520 | 263 | 13 | 147 | 656 | 110 | 567 | 8.59e-84 | 286 |
| Msa0685160 | AT2G17150.5 | 33.712 | 528 | 273 | 13 | 145 | 609 | 117 | 630 | 7.67e-75 | 259 |
| Msa0685160 | AT2G17150.3 | 33.712 | 528 | 273 | 13 | 145 | 609 | 117 | 630 | 7.67e-75 | 259 |
| Msa0685160 | AT2G17150.2 | 33.586 | 527 | 272 | 14 | 145 | 609 | 117 | 627 | 1.11e-73 | 255 |
| Msa0685160 | AT4G24020.2 | 40.102 | 394 | 202 | 9 | 286 | 658 | 2 | 382 | 3.14e-72 | 252 |
| Msa0685160 | AT4G24020.2 | 45.000 | 80 | 44 | 0 | 832 | 911 | 586 | 665 | 1.05e-16 | 85.5 |
| Msa0685160 | AT2G17150.4 | 36.256 | 422 | 198 | 10 | 303 | 665 | 22 | 431 | 9.69e-65 | 230 |
| Msa0685160 | AT2G17150.4 | 43.421 | 76 | 42 | 1 | 832 | 906 | 559 | 634 | 4.51e-12 | 70.5 |
Find 152 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 4_4:-49191766 | Msa0685160:CDS |
| TGCGATTAGTCACGAGGTTC+GGG | 0.268648 | 4_4:-49191475 | Msa0685160:CDS |
| TCTAATTCTTTGTCAAAATT+AGG | 0.287200 | 4_4:+49191369 | None:intergenic |
| ATTTGTTTCTCATGCACTTC+AGG | 0.297246 | 4_4:-49191346 | Msa0685160:intron |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 4_4:-49190723 | Msa0685160:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 4_4:-49188454 | Msa0685160:CDS |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.300677 | 4_4:+49192228 | None:intergenic |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 4_4:-49191579 | Msa0685160:CDS |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 4_4:-49189051 | Msa0685160:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 4_4:-49190905 | Msa0685160:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 4_4:+49189198 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 4_4:-49191855 | Msa0685160:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 4_4:-49190655 | Msa0685160:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 4_4:-49192014 | Msa0685160:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 4_4:-49190585 | Msa0685160:CDS |
| TTTCGCAGCGTGTGAATCTA+AGG | 0.337305 | 4_4:-49191241 | Msa0685160:intron |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 4_4:-49191731 | Msa0685160:CDS |
| AAATGTGCTATTACAAGAAA+TGG | 0.345785 | 4_4:-49191925 | Msa0685160:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 4_4:-49188734 | Msa0685160:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 4_4:-49188929 | Msa0685160:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 4_4:+49188832 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 4_4:+49192164 | None:intergenic |
| ATGCGATTAGTCACGAGGTT+CGG | 0.358260 | 4_4:-49191476 | Msa0685160:CDS |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 4_4:-49190844 | Msa0685160:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 4_4:-49191654 | Msa0685160:CDS |
| AGGTCATCACCATACTTTAT+AGG | 0.370674 | 4_4:+49191705 | None:intergenic |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 4_4:+49191679 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 4_4:-49189027 | Msa0685160:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 4_4:+49189016 | None:intergenic |
| CCAACATTAGAGGTCCATTC+AGG | 0.380914 | 4_4:+49191534 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 4_4:-49188873 | Msa0685160:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 4_4:-49188727 | Msa0685160:CDS |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 4_4:-49190514 | Msa0685160:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 4_4:+49190428 | None:intergenic |
| GCTGATTCCCCTCTCCTTTG+AGG | 0.402348 | 4_4:+49192220 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 4_4:-49190550 | Msa0685160:CDS |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 4_4:+49190956 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 4_4:+49191438 | None:intergenic |
| ATGATAGTAGCCAACATTAG+AGG | 0.411624 | 4_4:+49191524 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 4_4:-49191714 | Msa0685160:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 4_4:-49192122 | Msa0685160:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 4_4:-49188634 | Msa0685160:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 4_4:-49189093 | Msa0685160:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 4_4:+49189085 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 4_4:+49189781 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 4_4:-49188763 | Msa0685160:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.451171 | 4_4:-49188562 | Msa0685160:CDS |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 4_4:-49188653 | Msa0685160:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 4_4:+49191628 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 4_4:+49188961 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 4_4:-49192197 | Msa0685160:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 4_4:-49191548 | Msa0685160:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 4_4:-49191730 | Msa0685160:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 4_4:+49188889 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 4_4:-49188646 | Msa0685160:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 4_4:-49188661 | Msa0685160:CDS |
| TGGTGGAAATTACAATGGTA+TGG | 0.477511 | 4_4:-49191970 | Msa0685160:CDS |
| AGGAGAGGGGAATCAGCCTT+TGG | 0.478927 | 4_4:-49192214 | Msa0685160:CDS |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 4_4:-49188772 | Msa0685160:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 4_4:-49190527 | Msa0685160:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 4_4:+49188660 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 4_4:-49192110 | Msa0685160:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 4_4:-49190654 | Msa0685160:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 4_4:-49190559 | Msa0685160:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 4_4:-49188974 | Msa0685160:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 4_4:-49191756 | Msa0685160:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 4_4:-49190606 | Msa0685160:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 4_4:-49191588 | Msa0685160:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 4_4:+49188679 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 4_4:+49188425 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 4_4:-49190458 | Msa0685160:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 4_4:-49192229 | Msa0685160:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 4_4:+49191755 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 4_4:-49189853 | Msa0685160:CDS |
| TTTGCATATTCACCACATGA+TGG | 0.513284 | 4_4:-49192041 | Msa0685160:CDS |
| GCCTCCACGACTTCTTCCTC+AGG | 0.514345 | 4_4:-49191210 | Msa0685160:intron |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 4_4:+49191561 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 4_4:-49191809 | Msa0685160:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 4_4:-49188419 | Msa0685160:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 4_4:+49190799 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 4_4:-49188383 | Msa0685160:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 4_4:+49191570 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 4_4:-49191750 | Msa0685160:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 4_4:+49190440 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 4_4:+49188680 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 4_4:-49188413 | Msa0685160:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 4_4:-49188404 | Msa0685160:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 4_4:-49188797 | Msa0685160:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 4_4:-49191012 | Msa0685160:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 4_4:-49188721 | Msa0685160:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 4_4:-49188971 | Msa0685160:CDS |
| GATCACTTGTAGTTAGGATG+AGG | 0.549158 | 4_4:+49191685 | None:intergenic |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 4_4:-49190389 | Msa0685160:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 4_4:-49191753 | Msa0685160:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 4_4:-49189063 | Msa0685160:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 4_4:-49190717 | Msa0685160:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.562272 | 4_4:-49192228 | Msa0685160:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 4_4:+49190484 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 4_4:-49189066 | Msa0685160:CDS |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 4_4:+49188894 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 4_4:-49190898 | Msa0685160:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 4_4:-49188860 | Msa0685160:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.570990 | 4_4:-49190979 | Msa0685160:CDS |
| ATTCCATGTTGTTATAGTGA+AGG | 0.571178 | 4_4:-49191018 | Msa0685160:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 4_4:-49188414 | Msa0685160:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 4_4:-49190901 | Msa0685160:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.576033 | 4_4:+49191036 | None:intergenic |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 4_4:+49188645 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 4_4:-49189048 | Msa0685160:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 4_4:-49191041 | Msa0685160:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 4_4:-49188316 | Msa0685160:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 4_4:+49188969 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 4_4:+49192198 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 4_4:-49189102 | Msa0685160:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 4_4:-49191635 | Msa0685160:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 4_4:-49190558 | Msa0685160:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 4_4:-49188371 | Msa0685160:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 4_4:-49190797 | Msa0685160:CDS |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 4_4:+49188493 | None:intergenic |
| CCTGAATGGACCTCTAATGT+TGG | 0.597938 | 4_4:-49191534 | Msa0685160:CDS |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 4_4:-49189186 | Msa0685160:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 4_4:+49190649 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 4_4:-49188505 | Msa0685160:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 4_4:+49189150 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 4_4:+49191795 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 4_4:-49189173 | Msa0685160:CDS |
| GCTAAATTCAATCCATCATG+TGG | 0.611746 | 4_4:+49192029 | None:intergenic |
| GGTGTCAAAGCTAACTATAG+AGG | 0.613947 | 4_4:-49188541 | Msa0685160:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 4_4:-49192234 | Msa0685160:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 4_4:+49189054 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 4_4:-49190859 | Msa0685160:CDS |
| GAAATTGGTGGAAATTACAA+TGG | 0.620723 | 4_4:-49191975 | Msa0685160:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 4_4:-49190853 | Msa0685160:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 4_4:+49188822 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 4_4:+49189055 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 4_4:+49190754 | None:intergenic |
| AATACCTGAGGAAGAAGTCG+TGG | 0.639662 | 4_4:+49191206 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 4_4:-49192118 | Msa0685160:CDS |
| TTTCCTTCACTATAACAACA+TGG | 0.644491 | 4_4:+49191015 | None:intergenic |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 4_4:-49190863 | Msa0685160:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 4_4:+49190714 | None:intergenic |
| ACTTGAACTTGTCACTACAA+AGG | 0.651739 | 4_4:-49191397 | Msa0685160:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 4_4:-49188938 | Msa0685160:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 4_4:+49189101 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 4_4:-49191481 | Msa0685160:CDS |
| GCGATTAGTCACGAGGTTCG+GGG | 0.680730 | 4_4:-49191474 | Msa0685160:CDS |
| ACCTGAGGAAGAAGTCGTGG+AGG | 0.684396 | 4_4:+49191209 | None:intergenic |
| CAATATTCCTCAAAGGAGAG+GGG | 0.686366 | 4_4:-49192227 | Msa0685160:CDS |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 4_4:-49188879 | Msa0685160:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 4_4:-49188313 | Msa0685160:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 4_4:-49190466 | Msa0685160:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 4_4:+49190786 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr4_4:49190204-49190223 | None:intergenic | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr4_4:49190619-49190638 | Msa0685160:CDS | 15.0% |
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr4_4:49190652-49190671 | None:intergenic | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr4_4:49190659-49190678 | Msa0685160:CDS | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr4_4:49192082-49192101 | Msa0685160:CDS | 15.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr4_4:49188681-49188700 | Msa0685160:CDS | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr4_4:49189170-49189189 | None:intergenic | 20.0% |
| !! | GAAAATAGAAAAGTAGTATA+TGG | + | chr4_4:49189240-49189259 | None:intergenic | 20.0% |
| !! | AAATGATATATCAGAAATTC+AGG | + | chr4_4:49189364-49189383 | None:intergenic | 20.0% |
| !!! | TTTTATCTGAAATTCTTAAC+AGG | - | chr4_4:49189381-49189400 | Msa0685160:intron | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr4_4:49189631-49189650 | Msa0685160:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr4_4:49189635-49189654 | Msa0685160:intron | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr4_4:49190586-49190605 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr4_4:49190615-49190634 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr4_4:49190860-49190879 | Msa0685160:CDS | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr4_4:49190861-49190880 | Msa0685160:CDS | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr4_4:49191180-49191199 | None:intergenic | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr4_4:49191267-49191286 | None:intergenic | 20.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr4_4:49188522-49188541 | Msa0685160:CDS | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr4_4:49188549-49188568 | None:intergenic | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr4_4:49188546-49188565 | Msa0685160:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr4_4:49188549-49188568 | Msa0685160:CDS | 25.0% |
| !! | AAATGTGCTATTACAAGAAA+TGG | - | chr4_4:49188611-49188630 | Msa0685160:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr4_4:49188879-49188898 | None:intergenic | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr4_4:49188933-49188952 | Msa0685160:CDS | 25.0% |
| ! | AATAGAAAAGTAGTATATGG+TGG | + | chr4_4:49189237-49189256 | None:intergenic | 25.0% |
| ! | TACACACTGCATAAAAAAAA+AGG | + | chr4_4:49189408-49189427 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr4_4:49189583-49189602 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr4_4:49190009-49190028 | Msa0685160:intron | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr4_4:49190135-49190154 | None:intergenic | 25.0% |
| ! | GAAACATATGCTTCTTAAAA+TGG | + | chr4_4:49190234-49190253 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTATTGTGTATCA+TGG | - | chr4_4:49190250-49190269 | Msa0685160:intron | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr4_4:49190319-49190338 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr4_4:49190347-49190366 | Msa0685160:intron | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr4_4:49190412-49190431 | Msa0685160:CDS | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr4_4:49190413-49190432 | Msa0685160:CDS | 25.0% |
| ! | ATAGCAAATTAAGTGTGATA+TGG | + | chr4_4:49190537-49190556 | None:intergenic | 25.0% |
| !!! | TATCACACTTAATTTGCTAT+AGG | - | chr4_4:49190537-49190556 | Msa0685160:CDS | 25.0% |
| !!! | ATCACACTTAATTTGCTATA+GGG | - | chr4_4:49190538-49190557 | Msa0685160:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr4_4:49190780-49190799 | Msa0685160:CDS | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr4_4:49190781-49190800 | Msa0685160:CDS | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr4_4:49190982-49191001 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr4_4:49191186-49191205 | None:intergenic | 25.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr4_4:49191735-49191754 | Msa0685160:CDS | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr4_4:49191797-49191816 | Msa0685160:CDS | 25.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr4_4:49188351-49188370 | None:intergenic | 30.0% |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr4_4:49188375-49188394 | None:intergenic | 30.0% |
| GAAATTGGTGGAAATTACAA+TGG | - | chr4_4:49188561-49188580 | Msa0685160:CDS | 30.0% | |
| ! | CACATTTTCATCATAACTAG+TGG | + | chr4_4:49188598-49188617 | None:intergenic | 30.0% |
| TGATATCAAAATCACCTAGT+TGG | - | chr4_4:49188727-49188746 | Msa0685160:CDS | 30.0% | |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr4_4:49188932-49188951 | Msa0685160:CDS | 30.0% |
| TCAGAGTTCATATCAGATAT+AGG | + | chr4_4:49189101-49189120 | None:intergenic | 30.0% | |
| ATTCCATGTTGTTATAGTGA+AGG | - | chr4_4:49189518-49189537 | Msa0685160:intron | 30.0% | |
| TTTCCTTCACTATAACAACA+TGG | + | chr4_4:49189524-49189543 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr4_4:49189524-49189543 | Msa0685160:intron | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr4_4:49189638-49189657 | Msa0685160:intron | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr4_4:49189881-49189900 | Msa0685160:intron | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr4_4:49189882-49189901 | Msa0685160:intron | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr4_4:49189930-49189949 | Msa0685160:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr4_4:49190022-49190041 | Msa0685160:intron | 30.0% | |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr4_4:49190042-49190061 | Msa0685160:intron | 30.0% |
| GAAACGAACCTAAAAAATAG+TGG | - | chr4_4:49190124-49190143 | Msa0685160:intron | 30.0% | |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr4_4:49190299-49190318 | None:intergenic | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr4_4:49190300-49190319 | None:intergenic | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr4_4:49190421-49190440 | Msa0685160:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr4_4:49190425-49190444 | Msa0685160:CDS | 30.0% |
| TAACCAACAGAATGAAATCT+GGG | - | chr4_4:49190497-49190516 | Msa0685160:CDS | 30.0% | |
| !! | TCACACTTAATTTGCTATAG+GGG | - | chr4_4:49190539-49190558 | Msa0685160:CDS | 30.0% |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr4_4:49190647-49190666 | None:intergenic | 30.0% | |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr4_4:49190669-49190688 | Msa0685160:CDS | 30.0% |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr4_4:49190782-49190801 | Msa0685160:CDS | 30.0% | |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr4_4:49190870-49190889 | Msa0685160:CDS | 30.0% |
| TGCAACTCTTAAACTTATGA+TGG | + | chr4_4:49190934-49190953 | None:intergenic | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr4_4:49191009-49191028 | Msa0685160:CDS | 30.0% | |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr4_4:49191131-49191150 | None:intergenic | 30.0% |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr4_4:49191141-49191160 | Msa0685160:intron | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr4_4:49191221-49191240 | None:intergenic | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr4_4:49191523-49191542 | None:intergenic | 30.0% | |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr4_4:49191598-49191617 | Msa0685160:CDS | 30.0% |
| GTATTGAAGATTCAACAACA+TGG | - | chr4_4:49191657-49191676 | Msa0685160:CDS | 30.0% | |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr4_4:49191707-49191726 | None:intergenic | 30.0% |
| TTCAAGAACATAATCTACAG+AGG | + | chr4_4:49191717-49191736 | None:intergenic | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr4_4:49191734-49191753 | Msa0685160:CDS | 30.0% | |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr4_4:49191764-49191783 | Msa0685160:CDS | 30.0% |
| TTCAATGATTGAACTTGGTT+TGG | - | chr4_4:49191802-49191821 | Msa0685160:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr4_4:49191974-49191993 | Msa0685160:CDS | 30.0% | |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr4_4:49188414-49188433 | Msa0685160:CDS | 35.0% |
| TTTGCATATTCACCACATGA+TGG | - | chr4_4:49188495-49188514 | Msa0685160:CDS | 35.0% | |
| GCTAAATTCAATCCATCATG+TGG | + | chr4_4:49188510-49188529 | None:intergenic | 35.0% | |
| TGGTGGAAATTACAATGGTA+TGG | - | chr4_4:49188566-49188585 | Msa0685160:CDS | 35.0% | |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr4_4:49188770-49188789 | Msa0685160:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr4_4:49188806-49188825 | Msa0685160:CDS | 35.0% | |
| AGGTCATCACCATACTTTAT+AGG | + | chr4_4:49188834-49188853 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr4_4:49188860-49188879 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr4_4:49188882-49188901 | Msa0685160:CDS | 35.0% | |
| ATGATAGTAGCCAACATTAG+AGG | + | chr4_4:49189015-49189034 | None:intergenic | 35.0% | |
| ACTTGAACTTGTCACTACAA+AGG | - | chr4_4:49189139-49189158 | Msa0685160:CDS | 35.0% | |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr4_4:49189190-49189209 | Msa0685160:CDS | 35.0% |
| GAGCGAATACGAATTAAAGA+AGG | - | chr4_4:49189557-49189576 | Msa0685160:intron | 35.0% | |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr4_4:49189673-49189692 | Msa0685160:intron | 35.0% |
| TTCACATCGGTATAGAAGAA+TGG | + | chr4_4:49189740-49189759 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr4_4:49189739-49189758 | Msa0685160:intron | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr4_4:49189753-49189772 | None:intergenic | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr4_4:49189890-49189909 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr4_4:49189951-49189970 | Msa0685160:intron | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr4_4:49189978-49189997 | Msa0685160:intron | 35.0% | |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr4_4:49190041-49190060 | Msa0685160:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr4_4:49190043-49190062 | Msa0685160:intron | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr4_4:49190099-49190118 | None:intergenic | 35.0% |
| GTAACCAACAGAATGAAATC+TGG | - | chr4_4:49190496-49190515 | Msa0685160:CDS | 35.0% | |
| AACCAACAGAATGAAATCTG+GGG | - | chr4_4:49190498-49190517 | Msa0685160:CDS | 35.0% | |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr4_4:49190750-49190769 | Msa0685160:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr4_4:49190758-49190777 | None:intergenic | 35.0% |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr4_4:49190783-49190802 | Msa0685160:CDS | 35.0% | |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr4_4:49190894-49190913 | Msa0685160:CDS | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr4_4:49190895-49190914 | Msa0685160:CDS | 35.0% |
| GCTCTTATTCACAGATAAGT+GGG | + | chr4_4:49191109-49191128 | None:intergenic | 35.0% | |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr4_4:49191146-49191165 | None:intergenic | 35.0% |
| AACCAAGGATGTTATGAACT+TGG | + | chr4_4:49191206-49191225 | None:intergenic | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr4_4:49191259-49191278 | None:intergenic | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr4_4:49191260-49191279 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr4_4:49191341-49191360 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr4_4:49191350-49191369 | Msa0685160:CDS | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr4_4:49191363-49191382 | Msa0685160:CDS | 35.0% | |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr4_4:49191389-49191408 | None:intergenic | 35.0% |
| GGTTCAATCATCCAACAAAT+TGG | - | chr4_4:49191509-49191528 | Msa0685160:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr4_4:49191607-49191626 | Msa0685160:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr4_4:49191645-49191664 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr4_4:49191650-49191669 | None:intergenic | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr4_4:49191663-49191682 | Msa0685160:CDS | 35.0% | |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr4_4:49191809-49191828 | Msa0685160:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr4_4:49191946-49191965 | None:intergenic | 35.0% |
| AGTTGAAAACAACCTACAGA+TGG | + | chr4_4:49192046-49192065 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr4_4:49192114-49192133 | None:intergenic | 35.0% | |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr4_4:49192117-49192136 | Msa0685160:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr4_4:49192122-49192141 | Msa0685160:CDS | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr4_4:49192123-49192142 | Msa0685160:CDS | 35.0% |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr4_4:49192165-49192184 | Msa0685160:CDS | 35.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr4_4:49188302-49188321 | Msa0685160:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr4_4:49188307-49188326 | Msa0685160:CDS | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr4_4:49188308-49188327 | Msa0685160:CDS | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr4_4:49188309-49188328 | Msa0685160:CDS | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr4_4:49188341-49188360 | None:intergenic | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr4_4:49188339-49188358 | Msa0685160:CDS | 40.0% | |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr4_4:49188418-49188437 | Msa0685160:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr4_4:49188780-49188799 | Msa0685160:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr4_4:49188784-49188803 | None:intergenic | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr4_4:49188783-49188802 | Msa0685160:CDS | 40.0% |
| GAGGAATACTAGCACAAGTT+TGG | - | chr4_4:49188805-49188824 | Msa0685160:CDS | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr4_4:49188822-49188841 | Msa0685160:CDS | 40.0% | |
| GATCACTTGTAGTTAGGATG+AGG | + | chr4_4:49188854-49188873 | None:intergenic | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr4_4:49188948-49188967 | Msa0685160:CDS | 40.0% |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr4_4:49188988-49189007 | Msa0685160:CDS | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr4_4:49189677-49189696 | Msa0685160:intron | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr4_4:49189825-49189844 | None:intergenic | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr4_4:49189977-49189996 | Msa0685160:intron | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr4_4:49190070-49190089 | Msa0685160:intron | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr4_4:49190111-49190130 | None:intergenic | 40.0% | |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr4_4:49190147-49190166 | Msa0685160:intron | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr4_4:49190462-49190481 | None:intergenic | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr4_4:49190461-49190480 | Msa0685160:CDS | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr4_4:49190469-49190488 | None:intergenic | 40.0% | |
| GGTTACAAACTTACAACTCC+TGG | + | chr4_4:49190482-49190501 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr4_4:49190499-49190518 | Msa0685160:CDS | 40.0% | |
| !! | CTTAATTTGCTATAGGGGAG+TGG | - | chr4_4:49190544-49190563 | Msa0685160:CDS | 40.0% |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr4_4:49190683-49190702 | Msa0685160:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr4_4:49191110-49191129 | None:intergenic | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr4_4:49191201-49191220 | Msa0685160:intron | 40.0% | |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr4_4:49191559-49191578 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr4_4:49191560-49191579 | None:intergenic | 40.0% |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr4_4:49191562-49191581 | Msa0685160:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr4_4:49191578-49191597 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr4_4:49191739-49191758 | Msa0685160:CDS | 40.0% | |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr4_4:49191815-49191834 | Msa0685160:CDS | 40.0% |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr4_4:49191902-49191921 | Msa0685160:CDS | 40.0% | |
| GGTGTCAAAGCTAACTATAG+AGG | - | chr4_4:49191995-49192014 | Msa0685160:CDS | 40.0% | |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr4_4:49192031-49192050 | Msa0685160:CDS | 40.0% |
| GGTGAATGACTCAGATTTGA+AGG | - | chr4_4:49192153-49192172 | Msa0685160:CDS | 40.0% | |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr4_4:49192181-49192200 | Msa0685160:CDS | 40.0% |
| TTGCTCGTTCGCAATATACA+TGG | - | chr4_4:49192220-49192239 | Msa0685160:CDS | 40.0% | |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr4_4:49188311-49188330 | None:intergenic | 45.0% |
| CTCTCATCAAGTGACCAACT+AGG | + | chr4_4:49188744-49188763 | None:intergenic | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr4_4:49188786-49188805 | Msa0685160:CDS | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr4_4:49189005-49189024 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr4_4:49189002-49189021 | Msa0685160:CDS | 45.0% | |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr4_4:49189055-49189074 | Msa0685160:CDS | 45.0% |
| ! | ATGCGATTAGTCACGAGGTT+CGG | - | chr4_4:49189060-49189079 | Msa0685160:CDS | 45.0% |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr4_4:49189194-49189213 | Msa0685160:CDS | 45.0% | |
| TTTCGCAGCGTGTGAATCTA+AGG | - | chr4_4:49189295-49189314 | Msa0685160:intron | 45.0% | |
| AATACCTGAGGAAGAAGTCG+TGG | + | chr4_4:49189333-49189352 | None:intergenic | 45.0% | |
| CAGGAATCTGCAAATACCTG+AGG | + | chr4_4:49189345-49189364 | None:intergenic | 45.0% | |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr4_4:49189495-49189514 | Msa0685160:intron | 45.0% |
| CATCATCTTGAGGAAGGACA+AGG | - | chr4_4:49189683-49189702 | Msa0685160:intron | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr4_4:49189692-49189711 | Msa0685160:intron | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr4_4:49189813-49189832 | Msa0685160:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr4_4:49189986-49190005 | Msa0685160:intron | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr4_4:49190279-49190298 | Msa0685160:intron | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr4_4:49190503-49190522 | None:intergenic | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr4_4:49190502-49190521 | Msa0685160:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr4_4:49190503-49190522 | Msa0685160:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr4_4:49190697-49190716 | Msa0685160:CDS | 45.0% | |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr4_4:49190707-49190726 | Msa0685160:CDS | 45.0% |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr4_4:49191042-49191061 | None:intergenic | 45.0% | |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr4_4:49191159-49191178 | None:intergenic | 45.0% |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr4_4:49191438-49191457 | None:intergenic | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr4_4:49191443-49191462 | Msa0685160:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr4_4:49191454-49191473 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr4_4:49191470-49191489 | Msa0685160:CDS | 45.0% | |
| AAATTTGACCCTCACACTGG+TGG | - | chr4_4:49191473-49191492 | Msa0685160:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr4_4:49191484-49191503 | None:intergenic | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr4_4:49191565-49191584 | Msa0685160:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr4_4:49191570-49191589 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr4_4:49191676-49191695 | Msa0685160:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr4_4:49191773-49191792 | Msa0685160:CDS | 45.0% |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr4_4:49191859-49191878 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr4_4:49191860-49191879 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr4_4:49192132-49192151 | Msa0685160:CDS | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr4_4:49192223-49192242 | Msa0685160:CDS | 45.0% | |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr4_4:49188426-49188445 | Msa0685160:CDS | 50.0% |
| TAAACGACCTCGACACTTCG+CGG | + | chr4_4:49188911-49188930 | None:intergenic | 50.0% | |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr4_4:49188957-49188976 | Msa0685160:CDS | 50.0% |
| ! | TGCGATTAGTCACGAGGTTC+GGG | - | chr4_4:49189061-49189080 | Msa0685160:CDS | 50.0% |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr4_4:49189503-49189522 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr4_4:49189785-49189804 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr4_4:49189819-49189838 | Msa0685160:CDS | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr4_4:49190055-49190074 | None:intergenic | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr4_4:49190373-49190392 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr4_4:49190504-49190523 | Msa0685160:CDS | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr4_4:49190505-49190524 | Msa0685160:CDS | 50.0% | |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr4_4:49190903-49190922 | Msa0685160:CDS | 50.0% |
| CACAGATAAGTGGGCAGATG+CGG | + | chr4_4:49191100-49191119 | None:intergenic | 50.0% | |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr4_4:49191434-49191453 | Msa0685160:CDS | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr4_4:49191485-49191504 | None:intergenic | 50.0% | |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr4_4:49191485-49191504 | Msa0685160:CDS | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr4_4:49191488-49191507 | Msa0685160:CDS | 50.0% |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr4_4:49191875-49191894 | Msa0685160:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr4_4:49191879-49191898 | None:intergenic | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr4_4:49191883-49191902 | Msa0685160:CDS | 50.0% |
| TCCATTCACCATTGAGCCAG+AGG | + | chr4_4:49191894-49191913 | None:intergenic | 50.0% | |
| ! | GCTGATTCCCCTCTCCTTTG+AGG | + | chr4_4:49188319-49188338 | None:intergenic | 55.0% |
| AGGAGAGGGGAATCAGCCTT+TGG | - | chr4_4:49188322-49188341 | Msa0685160:CDS | 55.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr4_4:49188978-49188997 | None:intergenic | 55.0% | |
| ! | GCGATTAGTCACGAGGTTCG+GGG | - | chr4_4:49189062-49189081 | Msa0685160:CDS | 55.0% |
| ACCTGAGGAAGAAGTCGTGG+AGG | + | chr4_4:49189330-49189349 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr4_4:49190078-49190097 | Msa0685160:intron | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr4_4:49190387-49190406 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr4_4:49190506-49190525 | Msa0685160:CDS | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr4_4:49190552-49190571 | Msa0685160:CDS | 55.0% | |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr4_4:49190902-49190921 | Msa0685160:CDS | 55.0% |
| CCAACCCTCACACCCTCAAT+GGG | + | chr4_4:49190910-49190929 | None:intergenic | 55.0% | |
| ACCAACCCTCACACCCTCAA+TGG | + | chr4_4:49190911-49190930 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr4_4:49191890-49191909 | Msa0685160:CDS | 55.0% |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr4_4:49188901-49188920 | Msa0685160:CDS | 60.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr4_4:49188969-49188988 | None:intergenic | 60.0% | |
| GCCTCCACGACTTCTTCCTC+AGG | - | chr4_4:49189326-49189345 | Msa0685160:intron | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr4_4:49190382-49190401 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr4_4:49190907-49190926 | Msa0685160:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr4_4:49191091-49191110 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49188300 | 49192258 | 49188300 | ID=Msa0685160;Name=Msa0685160 |
| chr4_4 | mRNA | 49188300 | 49192258 | 49188300 | ID=Msa0685160-mRNA-1;Parent=Msa0685160;Name=Msa0685160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.2|1|1|1|5|0|917 |
| chr4_4 | exon | 49191347 | 49192258 | 49191347 | ID=Msa0685160-mRNA-1:exon:12287;Parent=Msa0685160-mRNA-1 |
| chr4_4 | exon | 49191211 | 49191255 | 49191211 | ID=Msa0685160-mRNA-1:exon:12286;Parent=Msa0685160-mRNA-1 |
| chr4_4 | exon | 49190390 | 49191136 | 49190390 | ID=Msa0685160-mRNA-1:exon:12285;Parent=Msa0685160-mRNA-1 |
| chr4_4 | exon | 49189754 | 49189877 | 49189754 | ID=Msa0685160-mRNA-1:exon:12284;Parent=Msa0685160-mRNA-1 |
| chr4_4 | exon | 49188300 | 49189225 | 49188300 | ID=Msa0685160-mRNA-1:exon:12283;Parent=Msa0685160-mRNA-1 |
| chr4_4 | CDS | 49191347 | 49192258 | 49191347 | ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1 |
| chr4_4 | CDS | 49191211 | 49191255 | 49191211 | ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1 |
| chr4_4 | CDS | 49190390 | 49191136 | 49190390 | ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1 |
| chr4_4 | CDS | 49189754 | 49189877 | 49189754 | ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1 |
| chr4_4 | CDS | 49188300 | 49189225 | 49188300 | ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
