AlfalfaGEDB | Msa0685160

M. sativa cultivar zhongmu-4 / Msa0685160

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685160	XP_024636796.1	96.405	918	26	3	1	917	1	912	0.0	1835

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685160	sp\|O22864\|NLP8_ARATH	49.378	964	400	23	1	911	1	929	0.0	779

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685160	G7JDS3	96.405	918	26	3	1	917	1	912	0.0	1835

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TFs/TRs:

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Gene ID	Type	Classification
Msa0685160	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0542110	Msa0685160	0.970063	4.741252e-131	-8.615850e-47
Msa0542150	Msa0685160	0.961945	2.705029e-120	-8.615850e-47
Msa0604980	Msa0685160	0.887150	1.836943e-72	-8.615850e-47
Msa0685160	Msa0945460	0.896035	5.424928e-76	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685160	MtrunA17_Chr4g0033791	96.405	918	26	3	1	917	1	912	0.0	1835
Msa0685160	MtrunA17_Chr2g0329671	59.541	959	327	17	1	911	1	946	0.0	1067
Msa0685160	MtrunA17_Chr6g0472281	36.717	798	402	20	152	911	112	844	7.13e-138	432
Msa0685160	MtrunA17_Chr3g0143921	39.744	546	286	12	151	665	138	671	1.12e-116	378
Msa0685160	MtrunA17_Chr1g0203081	40.530	528	288	10	152	659	124	645	6.46e-113	370
Msa0685160	MtrunA17_Chr1g0203081	44.444	81	44	1	832	911	886	966	2.58e-15	80.9
Msa0685160	MtrunA17_Chr5g0448621	33.884	363	196	11	148	502	122	448	4.65e-46	179
Msa0685160	MtrunA17_Chr5g0448621	67.778	90	25	1	578	667	607	692	2.80e-31	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0685160	AT2G43500.3	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.9	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.6	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.1	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.10	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.11	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.7	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.8	50.158	951	399	22	1	911	1	916	791
Msa0685160	AT2G43500.5	49.481	964	399	23	1	911	1	929	782
Msa0685160	AT2G43500.4	49.481	964	399	23	1	911	1	929	782

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Find 152 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTAAGTTACAAAA+TGG	0.299236	4_4:-49188454	Msa0685160:CDS
AAAATGGGATCTTGTTGTCC+TGG	0.501858	4_4:-49191588	Msa0685160:CDS
AAATCAAGCTGCTTACAGTC+AGG	0.553977	4_4:-49190389	Msa0685160:intron
AAATGTGCTATTACAAGAAA+TGG	0.345785	4_4:-49191925	Msa0685160:CDS
AAATTTGACCCTCACACTGG+TGG	0.556063	4_4:-49189063	Msa0685160:CDS
AACAAGTGGTTCAAGAAAGC+AGG	0.511373	4_4:-49189853	Msa0685160:CDS
AACACGCGACCAGGAAGTCC+AGG	0.529959	4_4:+49191570	None:intergenic
AACATCATAAGCCTTCACAT+CGG	0.714348	4_4:+49190786	None:intergenic
AACATGTCATCTGAAGTTAA+TGG	0.354035	4_4:+49192164	None:intergenic
AACCTCAGTACCTAAGTTGG+AGG	0.547544	4_4:-49188971	Msa0685160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATTGGTGGAAATTACAA+TGG	-	chr4_4:49188561-49188580	Msa0685160:CDS	30.0%
TGATATCAAAATCACCTAGT+TGG	-	chr4_4:49188727-49188746	Msa0685160:CDS	30.0%
TCAGAGTTCATATCAGATAT+AGG	+	chr4_4:49189101-49189120	None:intergenic	30.0%
ATTCCATGTTGTTATAGTGA+AGG	-	chr4_4:49189518-49189537	Msa0685160:intron	30.0%
TTTCCTTCACTATAACAACA+TGG	+	chr4_4:49189524-49189543	None:intergenic	30.0%
TGTTGTTATAGTGAAGGAAA+AGG	-	chr4_4:49189524-49189543	Msa0685160:intron	30.0%
ATCAATGATAAAATGGTAGG+AGG	-	chr4_4:49189638-49189657	Msa0685160:intron	30.0%
TTTCTTCCGATCAATATGAT+AGG	-	chr4_4:49189881-49189900	Msa0685160:intron	30.0%
TTCTTCCGATCAATATGATA+GGG	-	chr4_4:49189882-49189901	Msa0685160:intron	30.0%
ACAATTTGTCAGATACTATG+AGG	-	chr4_4:49189930-49189949	Msa0685160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	49188300	49192258	49188300	ID=Msa0685160;Name=Msa0685160
chr4_4	mRNA	49188300	49192258	49188300	ID=Msa0685160-mRNA-1;Parent=Msa0685160;Name=Msa0685160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.5\|0.2\|1\|1\|1\|5\|0\|917
chr4_4	exon	49191347	49192258	49191347	ID=Msa0685160-mRNA-1:exon:12287;Parent=Msa0685160-mRNA-1
chr4_4	exon	49191211	49191255	49191211	ID=Msa0685160-mRNA-1:exon:12286;Parent=Msa0685160-mRNA-1
chr4_4	exon	49190390	49191136	49190390	ID=Msa0685160-mRNA-1:exon:12285;Parent=Msa0685160-mRNA-1
chr4_4	exon	49189754	49189877	49189754	ID=Msa0685160-mRNA-1:exon:12284;Parent=Msa0685160-mRNA-1
chr4_4	exon	49188300	49189225	49188300	ID=Msa0685160-mRNA-1:exon:12283;Parent=Msa0685160-mRNA-1
chr4_4	CDS	49191347	49192258	49191347	ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1
chr4_4	CDS	49191211	49191255	49191211	ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1
chr4_4	CDS	49190390	49191136	49190390	ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1
chr4_4	CDS	49189754	49189877	49189754	ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1
chr4_4	CDS	49188300	49189225	49188300	ID=Msa0685160-mRNA-1:cds;Parent=Msa0685160-mRNA-1

Gene Sequence

>Msa0685160

ATGGAAGACCAATATTCCTCAAAGGAGAGGGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTCCATTAACTTCAGATGACATGTTTAACAACATCTCTGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATTCACCACATGATGGATTGAATTTAGCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGGTATGGATAGTTCCACTAGTTATGATGAAAATGTGCTATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATAATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATGATATCAAAATCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACCTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTGTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTCCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGCTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCGATTAGTCACGAGGTTCGGGGATCGATTGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATCTAAGGACTATTATGCCTCCACGACTTCTTCCTCAGTGTGTATCAAATAACAAAAGAGCTGCGTTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTTTACCTCTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGAATTAAAGAAGGCCATATGACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACGAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATAGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTAGGGGCAACTCTCAGATAGCGTTTAGTAGCGGTGACCAGGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGCAACAAGTGGTTCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCTGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAAAATTGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGTTCAATCATCCAACAAATTGGTACGCATAATAAAACTCTCATGTTCCCTGAGAAAACCTCAGTACCTAAGTTGGAGGATGAAGATGTTCTTGTTTCTAATTCATGTGAGGCAGAATTGGAGAAAGACAATGCCATTCCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCTCTGTAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGTAGTTTGCATGATGTTGGCTCTCATGGTTCTTTTTCAATGATTGAACTTGGTTTGGAAGAAGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCGAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCAGGATCTCAAAGCATTGAGAACCAGAAGCACTCGAAAATCAAATCAATCTGTGTCGATAGTGAATCAAAATTCGGTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTCGATCCATCTGTAGGTTGTTTTCAACTCTATGAAGAAGTTGCAAAAAGATTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAGGTTTTGAGTGACATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA

Protein sequence

>Msa0685160

MEDQYSSKERGISLWTPFDSGMKSPLTSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYSPHDGLNLAEHINGPFFMTEIGGNYNGMDSSTSYDENVLLQEMETQLEFLDNNSNETNNNLDSQQNGSYDMCNYMISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDLILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCPGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSNNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHMTSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGIEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDQDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGTHNKTLMFPEKTSVPKLEDEDVLVSNSCEAELEKDNAIPVDCIEDSTTWLWTKTQDCPKQTSVDYVLEKEQDQCGLDNSSLHDVGSHGSFSMIELGLEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKIKSICVDSESKFGVKANYRGDTIRFKFDPSVGCFQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS*