Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543490 | XP_004507018.1 | 85.950 | 121 | 16 | 1 | 1 | 120 | 178 | 298 | 3.70e-66 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543490 | sp|Q8H1G0|GAT28_ARATH | 61.062 | 113 | 44 | 0 | 1 | 113 | 179 | 291 | 1.48e-43 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543490 | A0A1S2YMG4 | 85.950 | 121 | 16 | 1 | 1 | 120 | 178 | 298 | 1.77e-66 | 212 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543490 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223260 | Msa0543490 | 0.823962 | 1.044432e-53 | -8.615850e-47 |
| Msa0543490 | Msa0543500 | 0.835599 | 1.527637e-56 | -8.615850e-47 |
| Msa0543490 | Msa0626330 | 0.804797 | 1.817832e-49 | -8.615850e-47 |
| Msa0543490 | Msa0664410 | 0.897459 | 1.378076e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543490 | MtrunA17_Chr4g0002231 | 87.342 | 79 | 10 | 0 | 1 | 79 | 57 | 135 | 9.14e-48 | 150 |
| Msa0543490 | MtrunA17_Chr4g0002251 | 67.606 | 71 | 15 | 1 | 43 | 113 | 7 | 69 | 8.18e-28 | 97.4 |
| Msa0543490 | MtrunA17_Chr5g0427661 | 47.154 | 123 | 34 | 5 | 1 | 100 | 167 | 281 | 1.61e-26 | 99.8 |
| Msa0543490 | MtrunA17_Chr3g0132761 | 58.621 | 87 | 26 | 2 | 1 | 86 | 164 | 241 | 2.16e-25 | 97.1 |
| Msa0543490 | MtrunA17_Chr3g0132751 | 51.724 | 87 | 37 | 1 | 1 | 87 | 163 | 244 | 1.30e-23 | 93.2 |
| Msa0543490 | MtrunA17_Chr4g0049741 | 49.020 | 102 | 39 | 3 | 1 | 99 | 140 | 231 | 6.41e-23 | 90.9 |
| Msa0543490 | MtrunA17_Chr3g0102511 | 42.529 | 87 | 43 | 2 | 1 | 87 | 11 | 90 | 5.39e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543490 | AT1G51600.1 | 61.062 | 113 | 44 | 0 | 1 | 113 | 179 | 291 | 1.51e-44 | 147 |
| Msa0543490 | AT1G51600.2 | 61.062 | 113 | 44 | 0 | 1 | 113 | 179 | 291 | 1.51e-44 | 147 |
| Msa0543490 | AT3G21175.2 | 59.649 | 114 | 43 | 2 | 1 | 112 | 173 | 285 | 5.43e-41 | 137 |
| Msa0543490 | AT3G21175.1 | 59.649 | 114 | 43 | 2 | 1 | 112 | 175 | 287 | 6.13e-41 | 137 |
| Msa0543490 | AT4G24470.3 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 2.61e-27 | 102 |
| Msa0543490 | AT4G24470.1 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 3.02e-27 | 102 |
| Msa0543490 | AT4G24470.2 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 3.02e-27 | 102 |
Find 38 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4_1:+29859023 | None:intergenic |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4_1:-29859427 | Msa0543490:intron |
| TGGACTTGGCAGATGTAAAT+TGG | 0.265787 | 4_1:+29859780 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_1:+29859459 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_1:+29859450 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4_1:-29859803 | None:intergenic |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_1:+29859477 | None:intergenic |
| ATCAAGGACAGCAACCTTGC+CGG | 0.414254 | 4_1:-29859057 | Msa0543490:CDS |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4_1:+29858896 | None:intergenic |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4_1:-29859084 | Msa0543490:intron |
| TCAGCTGATGCAGACTCATC+AGG | 0.441839 | 4_1:+29859755 | None:intergenic |
| GCAAGGTTGCTGTCCTTGAT+AGG | 0.445283 | 4_1:+29859060 | None:intergenic |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4_1:-29859085 | Msa0543490:intron |
| TTACACGGTATCTTGCTGTT+GGG | 0.489725 | 4_1:+29859685 | None:intergenic |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4_1:-29859437 | Msa0543490:CDS |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.497532 | 4_1:-29859723 | Msa0543490:CDS |
| CTTACACGGTATCTTGCTGT+TGG | 0.501886 | 4_1:+29859684 | None:intergenic |
| GGTTTGACGGTAGACAATAA+TGG | 0.505445 | 4_1:-29859710 | Msa0543490:CDS |
| AAGCACTGTCTGATTGGCCT+CGG | 0.507209 | 4_1:+29858902 | None:intergenic |
| TTCTCCATTAAACAAGAATG+AGG | 0.510040 | 4_1:-29859027 | Msa0543490:intron |
| AGACTCATCAGGATTGGACT+TGG | 0.520027 | 4_1:+29859766 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_1:-29859474 | Msa0543490:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_1:-29859447 | Msa0543490:CDS |
| TGATGCAGACTCATCAGGAT+TGG | 0.539391 | 4_1:+29859760 | None:intergenic |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4_1:-29859731 | Msa0543490:CDS |
| GAGCGCTTAGGGACCTATCA+AGG | 0.562951 | 4_1:-29859073 | Msa0543490:CDS |
| TTTAATGGAGAAATATGTGC+CGG | 0.575583 | 4_1:+29859038 | None:intergenic |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4_1:-29859436 | Msa0543490:CDS |
| TGGAGAAATATGTGCCGGCA+AGG | 0.585750 | 4_1:+29859043 | None:intergenic |
| TAATGTAAAGGTCTGTCATG+AGG | 0.590668 | 4_1:+29858863 | None:intergenic |
| AATGTAAAGGTCTGTCATGA+GGG | 0.591336 | 4_1:+29858864 | None:intergenic |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_1:-29859473 | Msa0543490:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_1:-29859488 | Msa0543490:CDS |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4_1:-29859519 | Msa0543490:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4_1:-29859743 | Msa0543490:CDS |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4_1:+29859442 | None:intergenic |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_1:-29859483 | Msa0543490:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4_1:+29859443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_1:29859058-29859077 | Msa0543490:CDS | 15.0% |
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_1:29859058-29859077 | Msa0543490:CDS | 15.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_1:29859325-29859344 | None:intergenic | 20.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | + | chr4_1:29859555-29859574 | None:intergenic | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_1:29859325-29859344 | None:intergenic | 20.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | + | chr4_1:29859555-29859574 | None:intergenic | 20.0% |
| !!! | ATATATTATGGTTGACTTGA+TGG | - | chr4_1:29859070-29859089 | Msa0543490:CDS | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | + | chr4_1:29859109-29859128 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_1:29859409-29859428 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_1:29859580-29859599 | Msa0543490:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | - | chr4_1:29859756-29859775 | Msa0543490:CDS | 25.0% |
| !!! | ATATATTATGGTTGACTTGA+TGG | - | chr4_1:29859070-29859089 | Msa0543490:CDS | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | + | chr4_1:29859109-29859128 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_1:29859409-29859428 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_1:29859580-29859599 | Msa0543490:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | - | chr4_1:29859756-29859775 | Msa0543490:CDS | 25.0% |
| AAGAAAGACTATTTCAGTGT+AGG | + | chr4_1:29859130-29859149 | None:intergenic | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_1:29859295-29859314 | None:intergenic | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | - | chr4_1:29859352-29859371 | Msa0543490:intron | 30.0% | |
| !! | GGACCTTTTCGATTATTTTT+CGG | + | chr4_1:29859358-29859377 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_1:29859478-29859497 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_1:29859476-29859495 | Msa0543490:CDS | 30.0% | |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | - | chr4_1:29859493-29859512 | Msa0543490:CDS | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_1:29859579-29859598 | Msa0543490:intron | 30.0% |
| TTTAATGGAGAAATATGTGC+CGG | + | chr4_1:29859640-29859659 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_1:29859648-29859667 | Msa0543490:intron | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_1:29859655-29859674 | None:intergenic | 30.0% |
| AAGAAAGACTATTTCAGTGT+AGG | + | chr4_1:29859130-29859149 | None:intergenic | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_1:29859295-29859314 | None:intergenic | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | - | chr4_1:29859352-29859371 | Msa0543490:intron | 30.0% | |
| !! | GGACCTTTTCGATTATTTTT+CGG | + | chr4_1:29859358-29859377 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_1:29859478-29859497 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_1:29859476-29859495 | Msa0543490:CDS | 30.0% | |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | - | chr4_1:29859493-29859512 | Msa0543490:CDS | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_1:29859579-29859598 | Msa0543490:intron | 30.0% |
| TTTAATGGAGAAATATGTGC+CGG | + | chr4_1:29859640-29859659 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_1:29859648-29859667 | Msa0543490:intron | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_1:29859655-29859674 | None:intergenic | 30.0% |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_1:29858932-29858951 | Msa0543490:intron | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_1:29858944-29858963 | Msa0543490:intron | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_1:29859148-29859167 | Msa0543490:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_1:29859255-29859274 | Msa0543490:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_1:29859458-29859477 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_1:29859718-29859737 | None:intergenic | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_1:29858932-29858951 | Msa0543490:intron | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_1:29858944-29858963 | Msa0543490:intron | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_1:29859148-29859167 | Msa0543490:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_1:29859255-29859274 | Msa0543490:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_1:29859458-29859477 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_1:29859718-29859737 | None:intergenic | 35.0% | |
| TGGACTTGGCAGATGTAAAT+TGG | + | chr4_1:29858898-29858917 | None:intergenic | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | - | chr4_1:29858965-29858984 | Msa0543490:intron | 40.0% | |
| !! | TTACACGGTATCTTGCTGTT+GGG | + | chr4_1:29858993-29859012 | None:intergenic | 40.0% |
| AAGATACCGTGTAAGTTCAC+TGG | - | chr4_1:29858999-29859018 | Msa0543490:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | + | chr4_1:29859008-29859027 | None:intergenic | 40.0% | |
| !!! | TCACTGGCTCATTTTTGAAC+AGG | - | chr4_1:29859015-29859034 | Msa0543490:intron | 40.0% |
| !! | TGGCTCATTTTTGAACAGGA+GGG | - | chr4_1:29859019-29859038 | Msa0543490:intron | 40.0% |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_1:29859239-29859258 | Msa0543490:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_1:29859248-29859267 | Msa0543490:intron | 40.0% | |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | + | chr4_1:29859535-29859554 | None:intergenic | 40.0% |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_1:29859702-29859721 | Msa0543490:CDS | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_1:29859782-29859801 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+TGG | + | chr4_1:29858898-29858917 | None:intergenic | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | - | chr4_1:29858965-29858984 | Msa0543490:intron | 40.0% | |
| !! | TTACACGGTATCTTGCTGTT+GGG | + | chr4_1:29858993-29859012 | None:intergenic | 40.0% |
| AAGATACCGTGTAAGTTCAC+TGG | - | chr4_1:29858999-29859018 | Msa0543490:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | + | chr4_1:29859008-29859027 | None:intergenic | 40.0% | |
| !!! | TCACTGGCTCATTTTTGAAC+AGG | - | chr4_1:29859015-29859034 | Msa0543490:intron | 40.0% |
| !! | TGGCTCATTTTTGAACAGGA+GGG | - | chr4_1:29859019-29859038 | Msa0543490:intron | 40.0% |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_1:29859239-29859258 | Msa0543490:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_1:29859248-29859267 | Msa0543490:intron | 40.0% | |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | + | chr4_1:29859535-29859554 | None:intergenic | 40.0% |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_1:29859702-29859721 | Msa0543490:CDS | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_1:29859782-29859801 | None:intergenic | 40.0% |
| AGACTCATCAGGATTGGACT+TGG | + | chr4_1:29858912-29858931 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | + | chr4_1:29858918-29858937 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_1:29858952-29858971 | Msa0543490:intron | 45.0% | |
| ! | CTTACACGGTATCTTGCTGT+TGG | + | chr4_1:29858994-29859013 | None:intergenic | 45.0% |
| !! | CTGGCTCATTTTTGAACAGG+AGG | - | chr4_1:29859018-29859037 | Msa0543490:intron | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_1:29859156-29859175 | Msa0543490:intron | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_1:29859235-29859254 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_1:29859236-29859255 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_1:29859238-29859257 | Msa0543490:intron | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | - | chr4_1:29859365-29859384 | Msa0543490:intron | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | + | chr4_1:29859379-29859398 | None:intergenic | 45.0% | |
| AGACTCATCAGGATTGGACT+TGG | + | chr4_1:29858912-29858931 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | + | chr4_1:29858918-29858937 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_1:29858952-29858971 | Msa0543490:intron | 45.0% | |
| ! | CTTACACGGTATCTTGCTGT+TGG | + | chr4_1:29858994-29859013 | None:intergenic | 45.0% |
| !! | CTGGCTCATTTTTGAACAGG+AGG | - | chr4_1:29859018-29859037 | Msa0543490:intron | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_1:29859156-29859175 | Msa0543490:intron | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_1:29859235-29859254 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_1:29859236-29859255 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_1:29859238-29859257 | Msa0543490:intron | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | - | chr4_1:29859365-29859384 | Msa0543490:intron | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | + | chr4_1:29859379-29859398 | None:intergenic | 45.0% | |
| TCAGCTGATGCAGACTCATC+AGG | + | chr4_1:29858923-29858942 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_1:29859187-29859206 | Msa0543490:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_1:29859228-29859247 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_1:29859228-29859247 | Msa0543490:intron | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | + | chr4_1:29859618-29859637 | None:intergenic | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | - | chr4_1:29859618-29859637 | Msa0543490:intron | 50.0% | |
| ! | TGGAGAAATATGTGCCGGCA+AGG | + | chr4_1:29859635-29859654 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | + | chr4_1:29859776-29859795 | None:intergenic | 50.0% |
| TCAGCTGATGCAGACTCATC+AGG | + | chr4_1:29858923-29858942 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_1:29859187-29859206 | Msa0543490:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_1:29859228-29859247 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_1:29859228-29859247 | Msa0543490:intron | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | + | chr4_1:29859618-29859637 | None:intergenic | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | - | chr4_1:29859618-29859637 | Msa0543490:intron | 50.0% | |
| ! | TGGAGAAATATGTGCCGGCA+AGG | + | chr4_1:29859635-29859654 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | + | chr4_1:29859776-29859795 | None:intergenic | 50.0% |
| ! | AGGTCCATGACTGTGGACTG+TGG | - | chr4_1:29859372-29859391 | Msa0543490:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_1:29859590-29859609 | Msa0543490:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_1:29859591-29859610 | Msa0543490:intron | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_1:29859602-29859621 | Msa0543490:intron | 55.0% | |
| ! | AGGTCCATGACTGTGGACTG+TGG | - | chr4_1:29859372-29859391 | Msa0543490:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_1:29859590-29859609 | Msa0543490:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_1:29859591-29859610 | Msa0543490:intron | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_1:29859602-29859621 | Msa0543490:intron | 55.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_1:29859201-29859220 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_1:29859201-29859220 | Msa0543490:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_1:29859202-29859221 | Msa0543490:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_1:29859219-29859238 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_1:29859201-29859220 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_1:29859201-29859220 | Msa0543490:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_1:29859202-29859221 | Msa0543490:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_1:29859219-29859238 | None:intergenic | 60.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_1:29859192-29859211 | Msa0543490:intron | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_1:29859598-29859617 | None:intergenic | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_1:29859192-29859211 | Msa0543490:intron | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_1:29859598-29859617 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 29858878 | 29859819 | 29858878 | ID=Msa0543490;Name=Msa0543490 |
| chr4_1 | mRNA | 29858878 | 29859819 | 29858878 | ID=Msa0543490-mRNA-1;Parent=Msa0543490;Name=Msa0543490-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.5|1|0.75|4|0|120 |
| chr4_1 | exon | 29859689 | 29859819 | 29859689 | ID=Msa0543490-mRNA-1:exon:7942;Parent=Msa0543490-mRNA-1 |
| chr4_1 | exon | 29859428 | 29859533 | 29859428 | ID=Msa0543490-mRNA-1:exon:7941;Parent=Msa0543490-mRNA-1 |
| chr4_1 | exon | 29859028 | 29859096 | 29859028 | ID=Msa0543490-mRNA-1:exon:7940;Parent=Msa0543490-mRNA-1 |
| chr4_1 | exon | 29858878 | 29858934 | 29858878 | ID=Msa0543490-mRNA-1:exon:7939;Parent=Msa0543490-mRNA-1 |
| chr4_1 | CDS | 29859689 | 29859819 | 29859689 | ID=Msa0543490-mRNA-1:cds;Parent=Msa0543490-mRNA-1 |
| chr4_1 | CDS | 29859428 | 29859533 | 29859428 | ID=Msa0543490-mRNA-1:cds;Parent=Msa0543490-mRNA-1 |
| chr4_1 | CDS | 29859028 | 29859096 | 29859028 | ID=Msa0543490-mRNA-1:cds;Parent=Msa0543490-mRNA-1 |
| chr4_1 | CDS | 29858878 | 29858934 | 29858878 | ID=Msa0543490-mRNA-1:cds;Parent=Msa0543490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
