Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543780 | XP_013455625.1 | 99.117 | 566 | 5 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543780 | sp|P45457|ACEA2_SOYBN | 89.088 | 559 | 59 | 1 | 8 | 566 | 1 | 557 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543780 | A0A072UJP2 | 99.117 | 566 | 5 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543780 | Msa0599540 | 0.943931 | 4.922443e-103 | -8.615850e-47 |
| Msa0543780 | Msa0640230 | 0.938106 | 1.163647e-98 | -8.615850e-47 |
| Msa0543780 | Msa0679110 | 0.922630 | 7.662596e-89 | -8.615850e-47 |
| Msa0543780 | Msa1200420 | 0.835605 | 1.522490e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543780 | MtrunA17_Chr4g0024191 | 99.117 | 566 | 5 | 0 | 1 | 566 | 12 | 577 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543780 | AT3G21720.1 | 77.739 | 566 | 125 | 1 | 1 | 566 | 12 | 576 | 0.0 | 957 |
Find 140 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCATCAGTTTATTT+TGG | 0.128571 | 4_1:+30846790 | Msa0543780:CDS |
| TCTCATCCTCGTTAACATTT+TGG | 0.176405 | 4_1:-30846976 | None:intergenic |
| TTTGTCGAACGCGGTGCTGC+TGG | 0.231397 | 4_1:+30846572 | Msa0543780:CDS |
| TGTTACTGAAGATCAATTTA+AGG | 0.237060 | 4_1:+30847905 | Msa0543780:CDS |
| TTTGTCTTAGGTTTCCTCTT+AGG | 0.247843 | 4_1:-30846139 | None:intergenic |
| ATGATCCCTTGTATCAATAT+TGG | 0.254265 | 4_1:-30846777 | None:intergenic |
| CACCACACGCTGATCTTATC+TGG | 0.275848 | 4_1:+30847194 | Msa0543780:CDS |
| AGTATAGCTCTTTCACATTC+TGG | 0.278293 | 4_1:-30847994 | None:intergenic |
| CTATCAATGCCCACTGTTCC+TGG | 0.282019 | 4_1:-30847942 | None:intergenic |
| TAAAACCCTTCTCTAGTTCT+AGG | 0.287639 | 4_1:-30847121 | None:intergenic |
| GGTCTCAAATAATCAATAAA+AGG | 0.302353 | 4_1:-30846485 | None:intergenic |
| TTGAGGCATAGGTTTGTCTT+AGG | 0.310375 | 4_1:-30846151 | None:intergenic |
| AAGGCTTCAATTTGATGTTA+TGG | 0.316260 | 4_1:+30846697 | Msa0543780:CDS |
| CGGTTAGTGAACATATTAAT+AGG | 0.324157 | 4_1:+30846663 | Msa0543780:CDS |
| ATGGCACAAGGATTTGCTTC+TGG | 0.324415 | 4_1:+30846857 | Msa0543780:CDS |
| AAAAGATGTTCAACTTTGTT+CGG | 0.327767 | 4_1:-30846386 | None:intergenic |
| TAGGTGTGAGAAACCTCTTT+TGG | 0.344319 | 4_1:+30847086 | Msa0543780:CDS |
| TTGTCTTAGGTTTCCTCTTA+GGG | 0.348543 | 4_1:-30846138 | None:intergenic |
| TGTGTGCACTCAACCACATT+TGG | 0.352120 | 4_1:-30847232 | None:intergenic |
| CGCGGTTCTGTTGGCTTGGT+GGG | 0.353855 | 4_1:-30846210 | None:intergenic |
| CTTCTCTTTGCTTTCTGTCA+TGG | 0.355319 | 4_1:-30846424 | None:intergenic |
| AAAGATGTTCAACTTTGTTC+GGG | 0.357887 | 4_1:-30846385 | None:intergenic |
| AGGCTTCAATTTGATGTTAT+GGG | 0.358560 | 4_1:+30846698 | Msa0543780:CDS |
| GGCTACTTCGGACTCGAATC+TGG | 0.358775 | 4_1:-30846042 | None:intergenic |
| TCACATGGCGGGGAAAGTTT+TGG | 0.363190 | 4_1:+30846637 | Msa0543780:CDS |
| ATTCCTAAGATCGCTCAGTT+AGG | 0.369228 | 4_1:+30847367 | Msa0543780:CDS |
| AACATTCGGTGCACTTGATC+CGG | 0.382426 | 4_1:+30846238 | Msa0543780:CDS |
| TACCCTAACTGAGCGATCTT+AGG | 0.383967 | 4_1:-30847370 | None:intergenic |
| AGGGAGATTTCTGAGAGATT+AGG | 0.384886 | 4_1:+30847067 | Msa0543780:CDS |
| GCCATTTGAGTGACTTGAAC+CGG | 0.391193 | 4_1:-30846257 | None:intergenic |
| AAAGAGTGGAGCTGAACTTC+AGG | 0.398181 | 4_1:+30846880 | Msa0543780:CDS |
| ATACACTTGCTCATCAGAAA+TGG | 0.399650 | 4_1:+30847530 | Msa0543780:CDS |
| TATGGGAGTTGAAACTGTTT+TGG | 0.403754 | 4_1:+30846715 | Msa0543780:CDS |
| TTGTCGAACGCGGTGCTGCT+GGG | 0.408084 | 4_1:+30846573 | Msa0543780:CDS |
| AAAGAGTTTGGCAACAGTTA+TGG | 0.409607 | 4_1:+30846838 | Msa0543780:CDS |
| TGCGCAGTTGAAAACTTTCT+CGG | 0.415239 | 4_1:+30846928 | Msa0543780:CDS |
| CACTCAAATGGCAAAACACT+TGG | 0.421562 | 4_1:+30846268 | Msa0543780:CDS |
| GTGGGCATTGATAGAGATAA+TGG | 0.425327 | 4_1:+30847951 | Msa0543780:CDS |
| GTGTCACCGTCAGCTATTAT+CGG | 0.435002 | 4_1:-30846506 | None:intergenic |
| TCGACGCGGTTCTGTTGGCT+TGG | 0.439953 | 4_1:-30846214 | None:intergenic |
| CGAGAAATGTCTTTCAATTG+AGG | 0.440558 | 4_1:+30847039 | Msa0543780:CDS |
| TGTTCTCGACGCGGTTCTGT+TGG | 0.442873 | 4_1:-30846219 | None:intergenic |
| GAGTCTGAAGGGAAAGAGTT+TGG | 0.453937 | 4_1:+30846826 | Msa0543780:CDS |
| AAGATCAGGACCAGGTTCAT+TGG | 0.454150 | 4_1:-30846339 | None:intergenic |
| GGATAACTCATTTGAGGCAT+AGG | 0.457391 | 4_1:-30846162 | None:intergenic |
| TTCCTAAGATCGCTCAGTTA+GGG | 0.462132 | 4_1:+30847368 | Msa0543780:CDS |
| ACGCGGTTCTGTTGGCTTGG+TGG | 0.462179 | 4_1:-30846211 | None:intergenic |
| TAATCACTTCAACATTTGCT+AGG | 0.466556 | 4_1:+30847437 | Msa0543780:CDS |
| AAGAAATGTGGTCACATGGC+GGG | 0.470668 | 4_1:+30846626 | Msa0543780:CDS |
| TTGGACACAATTTACGTCTC+AGG | 0.472223 | 4_1:+30846287 | Msa0543780:CDS |
| AGCTGAACTTCAGGCATTGG+AGG | 0.474914 | 4_1:+30846889 | Msa0543780:CDS |
| TGCTTGCACCTCGGCTACTT+CGG | 0.480788 | 4_1:-30846054 | None:intergenic |
| TCGGTACCTCAAAACTATCC+AGG | 0.481959 | 4_1:+30847573 | Msa0543780:CDS |
| AAAGACGTAGTTTCCCTAAG+AGG | 0.484308 | 4_1:+30846125 | Msa0543780:CDS |
| GTTACCGCTGCTGTTGTTCG+CGG | 0.494880 | 4_1:+30847160 | Msa0543780:CDS |
| CACACAACCACCAATGAACC+TGG | 0.503080 | 4_1:+30846329 | Msa0543780:CDS |
| TGGAGCTGAACTTCAGGCAT+TGG | 0.503758 | 4_1:+30846886 | Msa0543780:CDS |
| GCTGACGGTGACACTGGATT+CGG | 0.507165 | 4_1:+30846515 | Msa0543780:CDS |
| AAACTCTTTCCCTTCAGACT+CGG | 0.508721 | 4_1:-30846824 | None:intergenic |
| TACACTTGCTCATCAGAAAT+GGG | 0.513240 | 4_1:+30847531 | Msa0543780:CDS |
| TCAACCGCTGCAATGGGAAA+AGG | 0.513835 | 4_1:+30847607 | Msa0543780:CDS |
| GTTGAAAACTTTCTCGGAAG+CGG | 0.514423 | 4_1:+30846934 | Msa0543780:CDS |
| TGGCAGCATGGTGGTTGCTA+AGG | 0.514689 | 4_1:+30847971 | Msa0543780:CDS |
| TAAGGATAATCAGCAAGATC+AGG | 0.515265 | 4_1:-30846353 | None:intergenic |
| TGTTGCGTCAACCGCTGCAA+TGG | 0.518520 | 4_1:+30847600 | Msa0543780:CDS |
| TTCAATCCAATATTGATACA+AGG | 0.519422 | 4_1:+30846771 | Msa0543780:CDS |
| TCCGGTTCAAGTCACTCAAA+TGG | 0.523770 | 4_1:+30846256 | Msa0543780:CDS |
| GTCTTTCAATTGAGGAAGGT+AGG | 0.525513 | 4_1:+30847047 | Msa0543780:CDS |
| AGAACCGCGTCGAGAACATT+CGG | 0.526479 | 4_1:+30846224 | Msa0543780:CDS |
| ATAATAGCTGACGGTGACAC+TGG | 0.527517 | 4_1:+30846509 | Msa0543780:CDS |
| AATCACTTCAACATTTGCTA+GGG | 0.528772 | 4_1:+30847438 | Msa0543780:CDS |
| TGGCAGTTCATAACTGTTGG+AGG | 0.529681 | 4_1:+30847397 | Msa0543780:CDS |
| AAAGGAGGAGGTTGAACGAG+TGG | 0.536117 | 4_1:+30846999 | Msa0543780:CDS |
| GTTGCGTCAACCGCTGCAAT+GGG | 0.541092 | 4_1:+30847601 | Msa0543780:CDS |
| TCTTTCAATTGAGGAAGGTA+GGG | 0.543833 | 4_1:+30847048 | Msa0543780:CDS |
| AAGGAAACATGGACTAGGCC+AGG | 0.547173 | 4_1:+30847924 | Msa0543780:CDS |
| ATCAGGACCAGGTTCATTGG+TGG | 0.547518 | 4_1:-30846336 | None:intergenic |
| GAAGCATCCCAATTAAAAGA+TGG | 0.548954 | 4_1:-30847313 | None:intergenic |
| AGAAATGTGGTCACATGGCG+GGG | 0.550249 | 4_1:+30846627 | Msa0543780:CDS |
| GGATTTGCTTCTGGAAAGAG+TGG | 0.553663 | 4_1:+30846866 | Msa0543780:CDS |
| GCAAGTCCCAATCCCAAAAG+AGG | 0.559513 | 4_1:-30847099 | None:intergenic |
| TTAATAGGCTTGTTGCTGCA+AGG | 0.563432 | 4_1:+30846678 | Msa0543780:CDS |
| ATGTTAACGAGGATGAGAAA+AGG | 0.568265 | 4_1:+30846981 | Msa0543780:CDS |
| TGCTGCTGGGATTCACATTG+AGG | 0.568298 | 4_1:+30846586 | Msa0543780:CDS |
| TTGTTCGGGACAGTGTCGTA+AGG | 0.568513 | 4_1:-30846371 | None:intergenic |
| GAGTGCACACAGTTTGCTGA+AGG | 0.569482 | 4_1:+30847244 | Msa0543780:CDS |
| TCAATCCAATATTGATACAA+GGG | 0.570551 | 4_1:+30846772 | Msa0543780:CDS |
| ACGAGGATGAGAAAAGGAGG+AGG | 0.572283 | 4_1:+30846987 | Msa0543780:CDS |
| AAGTATCCACAGATATTGCT+CGG | 0.578731 | 4_1:+30847277 | Msa0543780:CDS |
| ACACAATTTACGTCTCAGGC+TGG | 0.581139 | 4_1:+30846291 | Msa0543780:CDS |
| CTTGCTCATCAGAAATGGGC+CGG | 0.586178 | 4_1:+30847535 | Msa0543780:CDS |
| GACTTGCCTAGAACTAGAGA+AGG | 0.586444 | 4_1:+30847115 | Msa0543780:CDS |
| AAATGTCTTTCAATTGAGGA+AGG | 0.590744 | 4_1:+30847043 | Msa0543780:CDS |
| AAGTAGCCGAGGTGCAAGCA+TGG | 0.591579 | 4_1:+30846057 | Msa0543780:CDS |
| TATGAGTGATATCGAAATGA+GGG | 0.592706 | 4_1:+30847339 | Msa0543780:CDS |
| TGTCGAAAGGATTCAAAGAG+AGG | 0.592801 | 4_1:+30847489 | Msa0543780:CDS |
| ATGGACTAGGCCAGGAACAG+TGG | 0.593862 | 4_1:+30847932 | Msa0543780:CDS |
| CGTGACGAATCCGAGTCTGA+AGG | 0.594026 | 4_1:+30846814 | Msa0543780:CDS |
| TTAACGAGGATGAGAAAAGG+AGG | 0.595598 | 4_1:+30846984 | Msa0543780:CDS |
| ACACGCTGATCTTATCTGGA+TGG | 0.596230 | 4_1:+30847198 | Msa0543780:CDS |
| CGGTACCTCAAAACTATCCA+GGG | 0.597608 | 4_1:+30847574 | Msa0543780:CDS |
| GTGTGGCAGTTCATAACTGT+TGG | 0.599082 | 4_1:+30847394 | Msa0543780:CDS |
| TTCAGGCATTGGAGGATCAG+TGG | 0.599344 | 4_1:+30846897 | Msa0543780:CDS |
| AAAGGATTCAAAGAGAGGAA+AGG | 0.602995 | 4_1:+30847494 | Msa0543780:CDS |
| GTGACGAATCCGAGTCTGAA+GGG | 0.606532 | 4_1:+30846815 | Msa0543780:CDS |
| GTATGAGTGATATCGAAATG+AGG | 0.607660 | 4_1:+30847338 | Msa0543780:CDS |
| GACGGTGACACTGGATTCGG+TGG | 0.609060 | 4_1:+30846518 | Msa0543780:CDS |
| TTGGCAACAGTTATGGCACA+AGG | 0.611584 | 4_1:+30846845 | Msa0543780:CDS |
| CAAAGAGAGGAAAGGAACAA+TGG | 0.612502 | 4_1:+30847502 | Msa0543780:CDS |
| GCGTTCTTGCACGATCCTCT+CGG | 0.613380 | 4_1:-30846463 | None:intergenic |
| AAGATCAATTTAAGGAAACA+TGG | 0.613442 | 4_1:+30847913 | Msa0543780:CDS |
| AATTTAAGGAAACATGGACT+AGG | 0.614157 | 4_1:+30847919 | Msa0543780:CDS |
| CGGTTGACGCAACACCACCC+TGG | 0.615584 | 4_1:-30847591 | None:intergenic |
| GGAAACAGCAAGTCCAAATG+TGG | 0.619509 | 4_1:+30847219 | Msa0543780:CDS |
| TGGACTAGGCCAGGAACAGT+GGG | 0.628373 | 4_1:+30847933 | Msa0543780:CDS |
| CAAGAGCCAAAATGTTAACG+AGG | 0.635217 | 4_1:+30846970 | Msa0543780:CDS |
| ACAGAAAGCAAAGAGAAGAG+AGG | 0.637146 | 4_1:+30846429 | Msa0543780:CDS |
| ACTTGCCTAGAACTAGAGAA+GGG | 0.637521 | 4_1:+30847116 | Msa0543780:CDS |
| ATTCGAGTCCGAAGTAGCCG+AGG | 0.641135 | 4_1:+30846046 | Msa0543780:CDS |
| GAATGCTAGCTTATGTCGAA+AGG | 0.643433 | 4_1:+30847476 | Msa0543780:CDS |
| TCGCTCAGTTAGGGTATGTG+TGG | 0.644468 | 4_1:+30847377 | Msa0543780:CDS |
| TGATAGAGATAATGGCAGCA+TGG | 0.645388 | 4_1:+30847959 | Msa0543780:CDS |
| CCGGTGCGAATTACTATGAT+CGG | 0.645865 | 4_1:+30847554 | Msa0543780:CDS |
| TCATCTGTGACTAAGAAATG+TGG | 0.647967 | 4_1:+30846614 | Msa0543780:CDS |
| TAATCAGCAAGATCAGGACC+AGG | 0.662714 | 4_1:-30846347 | None:intergenic |
| TAGCCGAGGTGCAAGCATGG+TGG | 0.664228 | 4_1:+30846060 | Msa0543780:CDS |
| GACTAAGAAATGTGGTCACA+TGG | 0.665396 | 4_1:+30846622 | Msa0543780:CDS |
| AGTGCACACAGTTTGCTGAA+GGG | 0.671542 | 4_1:+30847245 | Msa0543780:CDS |
| TTGTATCCGAGCAATATCTG+TGG | 0.672590 | 4_1:-30847283 | None:intergenic |
| TTGAGACCGATAATAGCTGA+CGG | 0.673402 | 4_1:+30846500 | Msa0543780:CDS |
| AAGCATGGTGGAACACTGAG+AGG | 0.675672 | 4_1:+30846072 | Msa0543780:CDS |
| TAAGAAATGTGGTCACATGG+CGG | 0.675905 | 4_1:+30846625 | Msa0543780:CDS |
| GTTCCACCATGCTTGCACCT+CGG | 0.691495 | 4_1:-30846063 | None:intergenic |
| CCGATCATAGTAATTCGCAC+CGG | 0.697391 | 4_1:-30847554 | None:intergenic |
| GAGGATGAGTATGAGCCGAG+AGG | 0.718491 | 4_1:+30846448 | Msa0543780:CDS |
| ATCCAGATAAGATCAGCGTG+TGG | 0.728979 | 4_1:-30847196 | None:intergenic |
| ACAACCGCGAACAACAGCAG+CGG | 0.731208 | 4_1:-30847164 | None:intergenic |
| TACCTCAAAACTATCCAGGG+TGG | 0.741495 | 4_1:+30847577 | Msa0543780:CDS |
| TAGAGATAATGGCAGCATGG+TGG | 0.765792 | 4_1:+30847962 | Msa0543780:CDS |
| TGCACCGAATGTTCTCGACG+CGG | 0.778136 | 4_1:-30846228 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAATGTTACAATTA+AGG | + | chr4_1:30847639-30847658 | Msa0543780:intron | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | + | chr4_1:30847882-30847901 | Msa0543780:intron | 10.0% |
| !! | ATAAATTAATGTTACAATTA+AGG | + | chr4_1:30847639-30847658 | Msa0543780:intron | 10.0% |
| !!! | TTACGATTTTAATTTTTTAT+AGG | + | chr4_1:30847882-30847901 | Msa0543780:intron | 10.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | - | chr4_1:30846389-30846408 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | - | chr4_1:30846488-30846507 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | + | chr4_1:30846771-30846790 | Msa0543780:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | + | chr4_1:30846772-30846791 | Msa0543780:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | + | chr4_1:30847905-30847924 | Msa0543780:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | + | chr4_1:30847913-30847932 | Msa0543780:CDS | 25.0% |
| ! | AAAAGATGTTCAACTTTGTT+CGG | - | chr4_1:30846389-30846408 | None:intergenic | 25.0% |
| ! | GGTCTCAAATAATCAATAAA+AGG | - | chr4_1:30846488-30846507 | None:intergenic | 25.0% |
| ! | TTCAATCCAATATTGATACA+AGG | + | chr4_1:30846771-30846790 | Msa0543780:CDS | 25.0% |
| ! | TCAATCCAATATTGATACAA+GGG | + | chr4_1:30846772-30846791 | Msa0543780:CDS | 25.0% |
| ! | TGTTACTGAAGATCAATTTA+AGG | + | chr4_1:30847905-30847924 | Msa0543780:CDS | 25.0% |
| ! | AAGATCAATTTAAGGAAACA+TGG | + | chr4_1:30847913-30847932 | Msa0543780:CDS | 25.0% |
| ! | CTTTTTGGATAACTCATTTG+AGG | - | chr4_1:30846171-30846190 | None:intergenic | 30.0% |
| ATGAGTTATCCAAAAAGCTA+TGG | + | chr4_1:30846174-30846193 | Msa0543780:CDS | 30.0% | |
| AAAGATGTTCAACTTTGTTC+GGG | - | chr4_1:30846388-30846407 | None:intergenic | 30.0% | |
| CGGTTAGTGAACATATTAAT+AGG | + | chr4_1:30846663-30846682 | Msa0543780:CDS | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | + | chr4_1:30846697-30846716 | Msa0543780:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | + | chr4_1:30846698-30846717 | Msa0543780:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | - | chr4_1:30846780-30846799 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | + | chr4_1:30846790-30846809 | Msa0543780:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | + | chr4_1:30846791-30846810 | Msa0543780:CDS | 30.0% |
| AAATGTCTTTCAATTGAGGA+AGG | + | chr4_1:30847043-30847062 | Msa0543780:CDS | 30.0% | |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | + | chr4_1:30847305-30847324 | Msa0543780:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | + | chr4_1:30847306-30847325 | Msa0543780:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | + | chr4_1:30847315-30847334 | Msa0543780:CDS | 30.0% |
| TATGAGTGATATCGAAATGA+GGG | + | chr4_1:30847339-30847358 | Msa0543780:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | + | chr4_1:30847437-30847456 | Msa0543780:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | + | chr4_1:30847438-30847457 | Msa0543780:CDS | 30.0% |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | - | chr4_1:30847818-30847837 | None:intergenic | 30.0% |
| AAAAATTAGCGCTATAACGA+GGG | - | chr4_1:30847831-30847850 | None:intergenic | 30.0% | |
| AAAAAATTAGCGCTATAACG+AGG | - | chr4_1:30847832-30847851 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | + | chr4_1:30847919-30847938 | Msa0543780:CDS | 30.0% | |
| ! | CTTTTTGGATAACTCATTTG+AGG | - | chr4_1:30846171-30846190 | None:intergenic | 30.0% |
| ATGAGTTATCCAAAAAGCTA+TGG | + | chr4_1:30846174-30846193 | Msa0543780:CDS | 30.0% | |
| AAAGATGTTCAACTTTGTTC+GGG | - | chr4_1:30846388-30846407 | None:intergenic | 30.0% | |
| CGGTTAGTGAACATATTAAT+AGG | + | chr4_1:30846663-30846682 | Msa0543780:CDS | 30.0% | |
| AAGGCTTCAATTTGATGTTA+TGG | + | chr4_1:30846697-30846716 | Msa0543780:CDS | 30.0% | |
| AGGCTTCAATTTGATGTTAT+GGG | + | chr4_1:30846698-30846717 | Msa0543780:CDS | 30.0% | |
| ATGATCCCTTGTATCAATAT+TGG | - | chr4_1:30846780-30846799 | None:intergenic | 30.0% | |
| ! | AAGGGATCATCAGTTTATTT+TGG | + | chr4_1:30846790-30846809 | Msa0543780:CDS | 30.0% |
| !! | AGGGATCATCAGTTTATTTT+GGG | + | chr4_1:30846791-30846810 | Msa0543780:CDS | 30.0% |
| AAATGTCTTTCAATTGAGGA+AGG | + | chr4_1:30847043-30847062 | Msa0543780:CDS | 30.0% | |
| ! | ATCTTTCGCCATCTTTTAAT+TGG | + | chr4_1:30847305-30847324 | Msa0543780:CDS | 30.0% |
| !! | TCTTTCGCCATCTTTTAATT+GGG | + | chr4_1:30847306-30847325 | Msa0543780:CDS | 30.0% |
| !! | ATCTTTTAATTGGGATGCTT+CGG | + | chr4_1:30847315-30847334 | Msa0543780:CDS | 30.0% |
| TATGAGTGATATCGAAATGA+GGG | + | chr4_1:30847339-30847358 | Msa0543780:CDS | 30.0% | |
| TAATCACTTCAACATTTGCT+AGG | + | chr4_1:30847437-30847456 | Msa0543780:CDS | 30.0% | |
| ! | AATCACTTCAACATTTGCTA+GGG | + | chr4_1:30847438-30847457 | Msa0543780:CDS | 30.0% |
| !! | ATAACGAGGGTTTTCTAAAA+AGG | - | chr4_1:30847818-30847837 | None:intergenic | 30.0% |
| AAAAATTAGCGCTATAACGA+GGG | - | chr4_1:30847831-30847850 | None:intergenic | 30.0% | |
| AAAAAATTAGCGCTATAACG+AGG | - | chr4_1:30847832-30847851 | None:intergenic | 30.0% | |
| AATTTAAGGAAACATGGACT+AGG | + | chr4_1:30847919-30847938 | Msa0543780:CDS | 30.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | - | chr4_1:30846108-30846127 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | - | chr4_1:30846141-30846160 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | - | chr4_1:30846142-30846161 | None:intergenic | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | - | chr4_1:30846356-30846375 | None:intergenic | 35.0% | |
| TCATCTGTGACTAAGAAATG+TGG | + | chr4_1:30846614-30846633 | Msa0543780:CDS | 35.0% | |
| ! | TATGGGAGTTGAAACTGTTT+TGG | + | chr4_1:30846715-30846734 | Msa0543780:CDS | 35.0% |
| AAAGAGTTTGGCAACAGTTA+TGG | + | chr4_1:30846838-30846857 | Msa0543780:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | - | chr4_1:30846979-30846998 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | + | chr4_1:30846981-30847000 | Msa0543780:CDS | 35.0% | |
| CGAGAAATGTCTTTCAATTG+AGG | + | chr4_1:30847039-30847058 | Msa0543780:CDS | 35.0% | |
| TCTTTCAATTGAGGAAGGTA+GGG | + | chr4_1:30847048-30847067 | Msa0543780:CDS | 35.0% | |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | - | chr4_1:30847124-30847143 | None:intergenic | 35.0% |
| ! | GAAGGGTTTTACAGGTTTAA+AGG | + | chr4_1:30847133-30847152 | Msa0543780:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | + | chr4_1:30847277-30847296 | Msa0543780:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | - | chr4_1:30847316-30847335 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | + | chr4_1:30847316-30847335 | Msa0543780:CDS | 35.0% |
| GTATGAGTGATATCGAAATG+AGG | + | chr4_1:30847338-30847357 | Msa0543780:CDS | 35.0% | |
| AAAGGATTCAAAGAGAGGAA+AGG | + | chr4_1:30847494-30847513 | Msa0543780:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | + | chr4_1:30847530-30847549 | Msa0543780:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | + | chr4_1:30847531-30847550 | Msa0543780:CDS | 35.0% | |
| AGTGACTCTCAGTAATATCA+AGG | - | chr4_1:30847703-30847722 | None:intergenic | 35.0% | |
| ! | TTTTGCTGAGTATGGTCTTT+GGG | - | chr4_1:30846108-30846127 | None:intergenic | 35.0% |
| TTGTCTTAGGTTTCCTCTTA+GGG | - | chr4_1:30846141-30846160 | None:intergenic | 35.0% | |
| TTTGTCTTAGGTTTCCTCTT+AGG | - | chr4_1:30846142-30846161 | None:intergenic | 35.0% | |
| TAAGGATAATCAGCAAGATC+AGG | - | chr4_1:30846356-30846375 | None:intergenic | 35.0% | |
| TCATCTGTGACTAAGAAATG+TGG | + | chr4_1:30846614-30846633 | Msa0543780:CDS | 35.0% | |
| ! | TATGGGAGTTGAAACTGTTT+TGG | + | chr4_1:30846715-30846734 | Msa0543780:CDS | 35.0% |
| AAAGAGTTTGGCAACAGTTA+TGG | + | chr4_1:30846838-30846857 | Msa0543780:CDS | 35.0% | |
| ! | TCTCATCCTCGTTAACATTT+TGG | - | chr4_1:30846979-30846998 | None:intergenic | 35.0% |
| ATGTTAACGAGGATGAGAAA+AGG | + | chr4_1:30846981-30847000 | Msa0543780:CDS | 35.0% | |
| CGAGAAATGTCTTTCAATTG+AGG | + | chr4_1:30847039-30847058 | Msa0543780:CDS | 35.0% | |
| TCTTTCAATTGAGGAAGGTA+GGG | + | chr4_1:30847048-30847067 | Msa0543780:CDS | 35.0% | |
| !! | TAAAACCCTTCTCTAGTTCT+AGG | - | chr4_1:30847124-30847143 | None:intergenic | 35.0% |
| ! | GAAGGGTTTTACAGGTTTAA+AGG | + | chr4_1:30847133-30847152 | Msa0543780:CDS | 35.0% |
| AAGTATCCACAGATATTGCT+CGG | + | chr4_1:30847277-30847296 | Msa0543780:CDS | 35.0% | |
| ! | GAAGCATCCCAATTAAAAGA+TGG | - | chr4_1:30847316-30847335 | None:intergenic | 35.0% |
| !! | TCTTTTAATTGGGATGCTTC+GGG | + | chr4_1:30847316-30847335 | Msa0543780:CDS | 35.0% |
| GTATGAGTGATATCGAAATG+AGG | + | chr4_1:30847338-30847357 | Msa0543780:CDS | 35.0% | |
| AAAGGATTCAAAGAGAGGAA+AGG | + | chr4_1:30847494-30847513 | Msa0543780:CDS | 35.0% | |
| ATACACTTGCTCATCAGAAA+TGG | + | chr4_1:30847530-30847549 | Msa0543780:CDS | 35.0% | |
| TACACTTGCTCATCAGAAAT+GGG | + | chr4_1:30847531-30847550 | Msa0543780:CDS | 35.0% | |
| AGTGACTCTCAGTAATATCA+AGG | - | chr4_1:30847703-30847722 | None:intergenic | 35.0% | |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | - | chr4_1:30846109-30846128 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | - | chr4_1:30846116-30846135 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | + | chr4_1:30846125-30846144 | Msa0543780:CDS | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | - | chr4_1:30846154-30846173 | None:intergenic | 40.0% | |
| ! | GGATAACTCATTTGAGGCAT+AGG | - | chr4_1:30846165-30846184 | None:intergenic | 40.0% |
| ! | GAGAAGTCTCCATAGCTTTT+TGG | - | chr4_1:30846186-30846205 | None:intergenic | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | + | chr4_1:30846268-30846287 | Msa0543780:CDS | 40.0% | |
| TTGGACACAATTTACGTCTC+AGG | + | chr4_1:30846287-30846306 | Msa0543780:CDS | 40.0% | |
| CTTCTCTTTGCTTTCTGTCA+TGG | - | chr4_1:30846427-30846446 | None:intergenic | 40.0% | |
| ACAGAAAGCAAAGAGAAGAG+AGG | + | chr4_1:30846429-30846448 | Msa0543780:CDS | 40.0% | |
| TTGAGACCGATAATAGCTGA+CGG | + | chr4_1:30846500-30846519 | Msa0543780:CDS | 40.0% | |
| ! | TGTAAGCTTTTTGTCGAACG+CGG | + | chr4_1:30846563-30846582 | Msa0543780:CDS | 40.0% |
| GACTAAGAAATGTGGTCACA+TGG | + | chr4_1:30846622-30846641 | Msa0543780:CDS | 40.0% | |
| TAAGAAATGTGGTCACATGG+CGG | + | chr4_1:30846625-30846644 | Msa0543780:CDS | 40.0% | |
| !! | TTAATAGGCTTGTTGCTGCA+AGG | + | chr4_1:30846678-30846697 | Msa0543780:CDS | 40.0% |
| AAACTCTTTCCCTTCAGACT+CGG | - | chr4_1:30846827-30846846 | None:intergenic | 40.0% | |
| TGCGCAGTTGAAAACTTTCT+CGG | + | chr4_1:30846928-30846947 | Msa0543780:CDS | 40.0% | |
| GTTGAAAACTTTCTCGGAAG+CGG | + | chr4_1:30846934-30846953 | Msa0543780:CDS | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | + | chr4_1:30846970-30846989 | Msa0543780:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | + | chr4_1:30846984-30847003 | Msa0543780:CDS | 40.0% | |
| GTCTTTCAATTGAGGAAGGT+AGG | + | chr4_1:30847047-30847066 | Msa0543780:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | + | chr4_1:30847067-30847086 | Msa0543780:CDS | 40.0% |
| ! | TAGGTGTGAGAAACCTCTTT+TGG | + | chr4_1:30847086-30847105 | Msa0543780:CDS | 40.0% |
| ! | AGGTGTGAGAAACCTCTTTT+GGG | + | chr4_1:30847087-30847106 | Msa0543780:CDS | 40.0% |
| !!! | TGAGAAACCTCTTTTGGGAT+TGG | + | chr4_1:30847092-30847111 | Msa0543780:CDS | 40.0% |
| !!! | GAGAAACCTCTTTTGGGATT+GGG | + | chr4_1:30847093-30847112 | Msa0543780:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | + | chr4_1:30847116-30847135 | Msa0543780:CDS | 40.0% | |
| ! | GAACTAGAGAAGGGTTTTAC+AGG | + | chr4_1:30847125-30847144 | Msa0543780:CDS | 40.0% |
| TTGTATCCGAGCAATATCTG+TGG | - | chr4_1:30847286-30847305 | None:intergenic | 40.0% | |
| ATTCCTAAGATCGCTCAGTT+AGG | + | chr4_1:30847367-30847386 | Msa0543780:CDS | 40.0% | |
| TTCCTAAGATCGCTCAGTTA+GGG | + | chr4_1:30847368-30847387 | Msa0543780:CDS | 40.0% | |
| ! | TTGCTAGGGATTTTGCTAAC+AGG | + | chr4_1:30847452-30847471 | Msa0543780:CDS | 40.0% |
| ! | TGCTAGGGATTTTGCTAACA+GGG | + | chr4_1:30847453-30847472 | Msa0543780:CDS | 40.0% |
| ! | GAATGCTAGCTTATGTCGAA+AGG | + | chr4_1:30847476-30847495 | Msa0543780:CDS | 40.0% |
| TGTCGAAAGGATTCAAAGAG+AGG | + | chr4_1:30847489-30847508 | Msa0543780:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | + | chr4_1:30847502-30847521 | Msa0543780:CDS | 40.0% | |
| CTGAGAGTCACTATCAAATG+TGG | + | chr4_1:30847711-30847730 | Msa0543780:intron | 40.0% | |
| AAATGTGGCGAATGTCAAAG+TGG | + | chr4_1:30847726-30847745 | Msa0543780:intron | 40.0% | |
| AATGTGGCGAATGTCAAAGT+GGG | + | chr4_1:30847727-30847746 | Msa0543780:intron | 40.0% | |
| GTCAAAGTGGGATCAAATTG+TGG | + | chr4_1:30847739-30847758 | Msa0543780:intron | 40.0% | |
| CATCAAAAACCTTGATGTCG+CGG | + | chr4_1:30847771-30847790 | Msa0543780:intron | 40.0% | |
| !! | GTGGGCATTGATAGAGATAA+TGG | + | chr4_1:30847951-30847970 | Msa0543780:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | + | chr4_1:30847959-30847978 | Msa0543780:CDS | 40.0% |
| ! | CTTTTGCTGAGTATGGTCTT+TGG | - | chr4_1:30846109-30846128 | None:intergenic | 40.0% |
| ! | ACTACGTCTTTTGCTGAGTA+TGG | - | chr4_1:30846116-30846135 | None:intergenic | 40.0% |
| AAAGACGTAGTTTCCCTAAG+AGG | + | chr4_1:30846125-30846144 | Msa0543780:CDS | 40.0% | |
| TTGAGGCATAGGTTTGTCTT+AGG | - | chr4_1:30846154-30846173 | None:intergenic | 40.0% | |
| ! | GGATAACTCATTTGAGGCAT+AGG | - | chr4_1:30846165-30846184 | None:intergenic | 40.0% |
| ! | GAGAAGTCTCCATAGCTTTT+TGG | - | chr4_1:30846186-30846205 | None:intergenic | 40.0% |
| CACTCAAATGGCAAAACACT+TGG | + | chr4_1:30846268-30846287 | Msa0543780:CDS | 40.0% | |
| TTGGACACAATTTACGTCTC+AGG | + | chr4_1:30846287-30846306 | Msa0543780:CDS | 40.0% | |
| CTTCTCTTTGCTTTCTGTCA+TGG | - | chr4_1:30846427-30846446 | None:intergenic | 40.0% | |
| ACAGAAAGCAAAGAGAAGAG+AGG | + | chr4_1:30846429-30846448 | Msa0543780:CDS | 40.0% | |
| TTGAGACCGATAATAGCTGA+CGG | + | chr4_1:30846500-30846519 | Msa0543780:CDS | 40.0% | |
| ! | TGTAAGCTTTTTGTCGAACG+CGG | + | chr4_1:30846563-30846582 | Msa0543780:CDS | 40.0% |
| GACTAAGAAATGTGGTCACA+TGG | + | chr4_1:30846622-30846641 | Msa0543780:CDS | 40.0% | |
| TAAGAAATGTGGTCACATGG+CGG | + | chr4_1:30846625-30846644 | Msa0543780:CDS | 40.0% | |
| !! | TTAATAGGCTTGTTGCTGCA+AGG | + | chr4_1:30846678-30846697 | Msa0543780:CDS | 40.0% |
| AAACTCTTTCCCTTCAGACT+CGG | - | chr4_1:30846827-30846846 | None:intergenic | 40.0% | |
| TGCGCAGTTGAAAACTTTCT+CGG | + | chr4_1:30846928-30846947 | Msa0543780:CDS | 40.0% | |
| GTTGAAAACTTTCTCGGAAG+CGG | + | chr4_1:30846934-30846953 | Msa0543780:CDS | 40.0% | |
| CAAGAGCCAAAATGTTAACG+AGG | + | chr4_1:30846970-30846989 | Msa0543780:CDS | 40.0% | |
| TTAACGAGGATGAGAAAAGG+AGG | + | chr4_1:30846984-30847003 | Msa0543780:CDS | 40.0% | |
| GTCTTTCAATTGAGGAAGGT+AGG | + | chr4_1:30847047-30847066 | Msa0543780:CDS | 40.0% | |
| ! | AGGGAGATTTCTGAGAGATT+AGG | + | chr4_1:30847067-30847086 | Msa0543780:CDS | 40.0% |
| ! | TAGGTGTGAGAAACCTCTTT+TGG | + | chr4_1:30847086-30847105 | Msa0543780:CDS | 40.0% |
| ! | AGGTGTGAGAAACCTCTTTT+GGG | + | chr4_1:30847087-30847106 | Msa0543780:CDS | 40.0% |
| !!! | TGAGAAACCTCTTTTGGGAT+TGG | + | chr4_1:30847092-30847111 | Msa0543780:CDS | 40.0% |
| !!! | GAGAAACCTCTTTTGGGATT+GGG | + | chr4_1:30847093-30847112 | Msa0543780:CDS | 40.0% |
| ACTTGCCTAGAACTAGAGAA+GGG | + | chr4_1:30847116-30847135 | Msa0543780:CDS | 40.0% | |
| ! | GAACTAGAGAAGGGTTTTAC+AGG | + | chr4_1:30847125-30847144 | Msa0543780:CDS | 40.0% |
| TTGTATCCGAGCAATATCTG+TGG | - | chr4_1:30847286-30847305 | None:intergenic | 40.0% | |
| ATTCCTAAGATCGCTCAGTT+AGG | + | chr4_1:30847367-30847386 | Msa0543780:CDS | 40.0% | |
| TTCCTAAGATCGCTCAGTTA+GGG | + | chr4_1:30847368-30847387 | Msa0543780:CDS | 40.0% | |
| ! | TTGCTAGGGATTTTGCTAAC+AGG | + | chr4_1:30847452-30847471 | Msa0543780:CDS | 40.0% |
| ! | TGCTAGGGATTTTGCTAACA+GGG | + | chr4_1:30847453-30847472 | Msa0543780:CDS | 40.0% |
| ! | GAATGCTAGCTTATGTCGAA+AGG | + | chr4_1:30847476-30847495 | Msa0543780:CDS | 40.0% |
| TGTCGAAAGGATTCAAAGAG+AGG | + | chr4_1:30847489-30847508 | Msa0543780:CDS | 40.0% | |
| CAAAGAGAGGAAAGGAACAA+TGG | + | chr4_1:30847502-30847521 | Msa0543780:CDS | 40.0% | |
| CTGAGAGTCACTATCAAATG+TGG | + | chr4_1:30847711-30847730 | Msa0543780:intron | 40.0% | |
| AAATGTGGCGAATGTCAAAG+TGG | + | chr4_1:30847726-30847745 | Msa0543780:intron | 40.0% | |
| AATGTGGCGAATGTCAAAGT+GGG | + | chr4_1:30847727-30847746 | Msa0543780:intron | 40.0% | |
| GTCAAAGTGGGATCAAATTG+TGG | + | chr4_1:30847739-30847758 | Msa0543780:intron | 40.0% | |
| CATCAAAAACCTTGATGTCG+CGG | + | chr4_1:30847771-30847790 | Msa0543780:intron | 40.0% | |
| !! | GTGGGCATTGATAGAGATAA+TGG | + | chr4_1:30847951-30847970 | Msa0543780:CDS | 40.0% |
| ! | TGATAGAGATAATGGCAGCA+TGG | + | chr4_1:30847959-30847978 | Msa0543780:CDS | 40.0% |
| !! | AACATTCGGTGCACTTGATC+CGG | + | chr4_1:30846238-30846257 | Msa0543780:CDS | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | + | chr4_1:30846256-30846275 | Msa0543780:CDS | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | - | chr4_1:30846260-30846279 | None:intergenic | 45.0% | |
| ACACAATTTACGTCTCAGGC+TGG | + | chr4_1:30846291-30846310 | Msa0543780:CDS | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | - | chr4_1:30846342-30846361 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | - | chr4_1:30846350-30846369 | None:intergenic | 45.0% | |
| GTGTCACCGTCAGCTATTAT+CGG | - | chr4_1:30846509-30846528 | None:intergenic | 45.0% | |
| ATAATAGCTGACGGTGACAC+TGG | + | chr4_1:30846509-30846528 | Msa0543780:CDS | 45.0% | |
| AAGAAATGTGGTCACATGGC+GGG | + | chr4_1:30846626-30846645 | Msa0543780:CDS | 45.0% | |
| GAGTCTGAAGGGAAAGAGTT+TGG | + | chr4_1:30846826-30846845 | Msa0543780:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | + | chr4_1:30846845-30846864 | Msa0543780:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | + | chr4_1:30846857-30846876 | Msa0543780:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | + | chr4_1:30846866-30846885 | Msa0543780:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | + | chr4_1:30846880-30846899 | Msa0543780:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | + | chr4_1:30847115-30847134 | Msa0543780:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | - | chr4_1:30847199-30847218 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | + | chr4_1:30847198-30847217 | Msa0543780:CDS | 45.0% | |
| GGAAACAGCAAGTCCAAATG+TGG | + | chr4_1:30847219-30847238 | Msa0543780:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+TGG | - | chr4_1:30847235-30847254 | None:intergenic | 45.0% | |
| !! | AGTGCACACAGTTTGCTGAA+GGG | + | chr4_1:30847245-30847264 | Msa0543780:CDS | 45.0% |
| TACCCTAACTGAGCGATCTT+AGG | - | chr4_1:30847373-30847392 | None:intergenic | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | + | chr4_1:30847394-30847413 | Msa0543780:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+AGG | + | chr4_1:30847397-30847416 | Msa0543780:CDS | 45.0% | |
| ! | GCTAGGGATTTTGCTAACAG+GGG | + | chr4_1:30847454-30847473 | Msa0543780:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | - | chr4_1:30847557-30847576 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | + | chr4_1:30847554-30847573 | Msa0543780:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | + | chr4_1:30847573-30847592 | Msa0543780:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | + | chr4_1:30847574-30847593 | Msa0543780:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | + | chr4_1:30847577-30847596 | Msa0543780:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | - | chr4_1:30847614-30847633 | None:intergenic | 45.0% |
| ! | TAGAGATAATGGCAGCATGG+TGG | + | chr4_1:30847962-30847981 | Msa0543780:CDS | 45.0% |
| !! | AACATTCGGTGCACTTGATC+CGG | + | chr4_1:30846238-30846257 | Msa0543780:CDS | 45.0% |
| TCCGGTTCAAGTCACTCAAA+TGG | + | chr4_1:30846256-30846275 | Msa0543780:CDS | 45.0% | |
| GCCATTTGAGTGACTTGAAC+CGG | - | chr4_1:30846260-30846279 | None:intergenic | 45.0% | |
| ACACAATTTACGTCTCAGGC+TGG | + | chr4_1:30846291-30846310 | Msa0543780:CDS | 45.0% | |
| AAGATCAGGACCAGGTTCAT+TGG | - | chr4_1:30846342-30846361 | None:intergenic | 45.0% | |
| TAATCAGCAAGATCAGGACC+AGG | - | chr4_1:30846350-30846369 | None:intergenic | 45.0% | |
| GTGTCACCGTCAGCTATTAT+CGG | - | chr4_1:30846509-30846528 | None:intergenic | 45.0% | |
| ATAATAGCTGACGGTGACAC+TGG | + | chr4_1:30846509-30846528 | Msa0543780:CDS | 45.0% | |
| AAGAAATGTGGTCACATGGC+GGG | + | chr4_1:30846626-30846645 | Msa0543780:CDS | 45.0% | |
| GAGTCTGAAGGGAAAGAGTT+TGG | + | chr4_1:30846826-30846845 | Msa0543780:CDS | 45.0% | |
| TTGGCAACAGTTATGGCACA+AGG | + | chr4_1:30846845-30846864 | Msa0543780:CDS | 45.0% | |
| ! | ATGGCACAAGGATTTGCTTC+TGG | + | chr4_1:30846857-30846876 | Msa0543780:CDS | 45.0% |
| ! | GGATTTGCTTCTGGAAAGAG+TGG | + | chr4_1:30846866-30846885 | Msa0543780:CDS | 45.0% |
| AAAGAGTGGAGCTGAACTTC+AGG | + | chr4_1:30846880-30846899 | Msa0543780:CDS | 45.0% | |
| GACTTGCCTAGAACTAGAGA+AGG | + | chr4_1:30847115-30847134 | Msa0543780:CDS | 45.0% | |
| ATCCAGATAAGATCAGCGTG+TGG | - | chr4_1:30847199-30847218 | None:intergenic | 45.0% | |
| ACACGCTGATCTTATCTGGA+TGG | + | chr4_1:30847198-30847217 | Msa0543780:CDS | 45.0% | |
| GGAAACAGCAAGTCCAAATG+TGG | + | chr4_1:30847219-30847238 | Msa0543780:CDS | 45.0% | |
| TGTGTGCACTCAACCACATT+TGG | - | chr4_1:30847235-30847254 | None:intergenic | 45.0% | |
| !! | AGTGCACACAGTTTGCTGAA+GGG | + | chr4_1:30847245-30847264 | Msa0543780:CDS | 45.0% |
| TACCCTAACTGAGCGATCTT+AGG | - | chr4_1:30847373-30847392 | None:intergenic | 45.0% | |
| GTGTGGCAGTTCATAACTGT+TGG | + | chr4_1:30847394-30847413 | Msa0543780:CDS | 45.0% | |
| TGGCAGTTCATAACTGTTGG+AGG | + | chr4_1:30847397-30847416 | Msa0543780:CDS | 45.0% | |
| ! | GCTAGGGATTTTGCTAACAG+GGG | + | chr4_1:30847454-30847473 | Msa0543780:CDS | 45.0% |
| CCGATCATAGTAATTCGCAC+CGG | - | chr4_1:30847557-30847576 | None:intergenic | 45.0% | |
| CCGGTGCGAATTACTATGAT+CGG | + | chr4_1:30847554-30847573 | Msa0543780:CDS | 45.0% | |
| TCGGTACCTCAAAACTATCC+AGG | + | chr4_1:30847573-30847592 | Msa0543780:CDS | 45.0% | |
| CGGTACCTCAAAACTATCCA+GGG | + | chr4_1:30847574-30847593 | Msa0543780:CDS | 45.0% | |
| TACCTCAAAACTATCCAGGG+TGG | + | chr4_1:30847577-30847596 | Msa0543780:CDS | 45.0% | |
| ! | CTTACCTTTTCCCATTGCAG+CGG | - | chr4_1:30847614-30847633 | None:intergenic | 45.0% |
| ! | TAGAGATAATGGCAGCATGG+TGG | + | chr4_1:30847962-30847981 | Msa0543780:CDS | 45.0% |
| !!! | AATTTTTTTTAATAAAACAA+CGG | + | chr4_1:30847844-30847863 | Msa0543780:intron | 5.0% |
| !!! | AATTTTTTTTAATAAAACAA+CGG | + | chr4_1:30847844-30847863 | Msa0543780:intron | 5.0% |
| ! | AAGCATGGTGGAACACTGAG+AGG | + | chr4_1:30846072-30846091 | Msa0543780:CDS | 50.0% |
| AGAACCGCGTCGAGAACATT+CGG | + | chr4_1:30846224-30846243 | Msa0543780:CDS | 50.0% | |
| CACACAACCACCAATGAACC+TGG | + | chr4_1:30846329-30846348 | Msa0543780:CDS | 50.0% | |
| ATCAGGACCAGGTTCATTGG+TGG | - | chr4_1:30846339-30846358 | None:intergenic | 50.0% | |
| TTGTTCGGGACAGTGTCGTA+AGG | - | chr4_1:30846374-30846393 | None:intergenic | 50.0% | |
| TGCTGCTGGGATTCACATTG+AGG | + | chr4_1:30846586-30846605 | Msa0543780:CDS | 50.0% | |
| AGAAATGTGGTCACATGGCG+GGG | + | chr4_1:30846627-30846646 | Msa0543780:CDS | 50.0% | |
| !! | TCACATGGCGGGGAAAGTTT+TGG | + | chr4_1:30846637-30846656 | Msa0543780:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | + | chr4_1:30846815-30846834 | Msa0543780:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | + | chr4_1:30846886-30846905 | Msa0543780:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | + | chr4_1:30846889-30846908 | Msa0543780:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | + | chr4_1:30846897-30846916 | Msa0543780:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | + | chr4_1:30846987-30847006 | Msa0543780:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | + | chr4_1:30846999-30847018 | Msa0543780:CDS | 50.0% | |
| GCAAGTCCCAATCCCAAAAG+AGG | - | chr4_1:30847102-30847121 | None:intergenic | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | + | chr4_1:30847194-30847213 | Msa0543780:CDS | 50.0% | |
| !! | GAGTGCACACAGTTTGCTGA+AGG | + | chr4_1:30847244-30847263 | Msa0543780:CDS | 50.0% |
| TCGCTCAGTTAGGGTATGTG+TGG | + | chr4_1:30847377-30847396 | Msa0543780:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | + | chr4_1:30847535-30847554 | Msa0543780:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | - | chr4_1:30847582-30847601 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | + | chr4_1:30847607-30847626 | Msa0543780:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | + | chr4_1:30847924-30847943 | Msa0543780:CDS | 50.0% |
| CTATCAATGCCCACTGTTCC+TGG | - | chr4_1:30847945-30847964 | None:intergenic | 50.0% | |
| ! | AAGCATGGTGGAACACTGAG+AGG | + | chr4_1:30846072-30846091 | Msa0543780:CDS | 50.0% |
| AGAACCGCGTCGAGAACATT+CGG | + | chr4_1:30846224-30846243 | Msa0543780:CDS | 50.0% | |
| CACACAACCACCAATGAACC+TGG | + | chr4_1:30846329-30846348 | Msa0543780:CDS | 50.0% | |
| ATCAGGACCAGGTTCATTGG+TGG | - | chr4_1:30846339-30846358 | None:intergenic | 50.0% | |
| TTGTTCGGGACAGTGTCGTA+AGG | - | chr4_1:30846374-30846393 | None:intergenic | 50.0% | |
| TGCTGCTGGGATTCACATTG+AGG | + | chr4_1:30846586-30846605 | Msa0543780:CDS | 50.0% | |
| AGAAATGTGGTCACATGGCG+GGG | + | chr4_1:30846627-30846646 | Msa0543780:CDS | 50.0% | |
| !! | TCACATGGCGGGGAAAGTTT+TGG | + | chr4_1:30846637-30846656 | Msa0543780:CDS | 50.0% |
| GTGACGAATCCGAGTCTGAA+GGG | + | chr4_1:30846815-30846834 | Msa0543780:CDS | 50.0% | |
| TGGAGCTGAACTTCAGGCAT+TGG | + | chr4_1:30846886-30846905 | Msa0543780:CDS | 50.0% | |
| !! | AGCTGAACTTCAGGCATTGG+AGG | + | chr4_1:30846889-30846908 | Msa0543780:CDS | 50.0% |
| !! | TTCAGGCATTGGAGGATCAG+TGG | + | chr4_1:30846897-30846916 | Msa0543780:CDS | 50.0% |
| ACGAGGATGAGAAAAGGAGG+AGG | + | chr4_1:30846987-30847006 | Msa0543780:CDS | 50.0% | |
| AAAGGAGGAGGTTGAACGAG+TGG | + | chr4_1:30846999-30847018 | Msa0543780:CDS | 50.0% | |
| GCAAGTCCCAATCCCAAAAG+AGG | - | chr4_1:30847102-30847121 | None:intergenic | 50.0% | |
| CACCACACGCTGATCTTATC+TGG | + | chr4_1:30847194-30847213 | Msa0543780:CDS | 50.0% | |
| !! | GAGTGCACACAGTTTGCTGA+AGG | + | chr4_1:30847244-30847263 | Msa0543780:CDS | 50.0% |
| TCGCTCAGTTAGGGTATGTG+TGG | + | chr4_1:30847377-30847396 | Msa0543780:CDS | 50.0% | |
| CTTGCTCATCAGAAATGGGC+CGG | + | chr4_1:30847535-30847554 | Msa0543780:CDS | 50.0% | |
| !! | CACCACCCTGGATAGTTTTG+AGG | - | chr4_1:30847582-30847601 | None:intergenic | 50.0% |
| TCAACCGCTGCAATGGGAAA+AGG | + | chr4_1:30847607-30847626 | Msa0543780:CDS | 50.0% | |
| !! | AAGGAAACATGGACTAGGCC+AGG | + | chr4_1:30847924-30847943 | Msa0543780:CDS | 50.0% |
| CTATCAATGCCCACTGTTCC+TGG | - | chr4_1:30847945-30847964 | None:intergenic | 50.0% | |
| GGCTACTTCGGACTCGAATC+TGG | - | chr4_1:30846045-30846064 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | + | chr4_1:30846046-30846065 | Msa0543780:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | - | chr4_1:30846057-30846076 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | + | chr4_1:30846057-30846076 | Msa0543780:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | - | chr4_1:30846066-30846085 | None:intergenic | 55.0% | |
| TGTTCTCGACGCGGTTCTGT+TGG | - | chr4_1:30846222-30846241 | None:intergenic | 55.0% | |
| TGCACCGAATGTTCTCGACG+CGG | - | chr4_1:30846231-30846250 | None:intergenic | 55.0% | |
| GAGGATGAGTATGAGCCGAG+AGG | + | chr4_1:30846448-30846467 | Msa0543780:CDS | 55.0% | |
| GCGTTCTTGCACGATCCTCT+CGG | - | chr4_1:30846466-30846485 | None:intergenic | 55.0% | |
| GCTGACGGTGACACTGGATT+CGG | + | chr4_1:30846515-30846534 | Msa0543780:CDS | 55.0% | |
| !!! | GGCGGGGAAAGTTTTGGTTG+CGG | + | chr4_1:30846643-30846662 | Msa0543780:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | + | chr4_1:30846814-30846833 | Msa0543780:CDS | 55.0% | |
| GTTACCGCTGCTGTTGTTCG+CGG | + | chr4_1:30847160-30847179 | Msa0543780:CDS | 55.0% | |
| ACAACCGCGAACAACAGCAG+CGG | - | chr4_1:30847167-30847186 | None:intergenic | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | + | chr4_1:30847600-30847619 | Msa0543780:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | + | chr4_1:30847601-30847620 | Msa0543780:CDS | 55.0% | |
| AGATCTGAGCCGCGACATCA+AGG | - | chr4_1:30847783-30847802 | None:intergenic | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+TGG | + | chr4_1:30847932-30847951 | Msa0543780:CDS | 55.0% |
| ! | TGGACTAGGCCAGGAACAGT+GGG | + | chr4_1:30847933-30847952 | Msa0543780:CDS | 55.0% |
| TGGCAGCATGGTGGTTGCTA+AGG | + | chr4_1:30847971-30847990 | Msa0543780:CDS | 55.0% | |
| GGCTACTTCGGACTCGAATC+TGG | - | chr4_1:30846045-30846064 | None:intergenic | 55.0% | |
| ATTCGAGTCCGAAGTAGCCG+AGG | + | chr4_1:30846046-30846065 | Msa0543780:CDS | 55.0% | |
| TGCTTGCACCTCGGCTACTT+CGG | - | chr4_1:30846057-30846076 | None:intergenic | 55.0% | |
| AAGTAGCCGAGGTGCAAGCA+TGG | + | chr4_1:30846057-30846076 | Msa0543780:CDS | 55.0% | |
| GTTCCACCATGCTTGCACCT+CGG | - | chr4_1:30846066-30846085 | None:intergenic | 55.0% | |
| TGTTCTCGACGCGGTTCTGT+TGG | - | chr4_1:30846222-30846241 | None:intergenic | 55.0% | |
| TGCACCGAATGTTCTCGACG+CGG | - | chr4_1:30846231-30846250 | None:intergenic | 55.0% | |
| GAGGATGAGTATGAGCCGAG+AGG | + | chr4_1:30846448-30846467 | Msa0543780:CDS | 55.0% | |
| GCGTTCTTGCACGATCCTCT+CGG | - | chr4_1:30846466-30846485 | None:intergenic | 55.0% | |
| GCTGACGGTGACACTGGATT+CGG | + | chr4_1:30846515-30846534 | Msa0543780:CDS | 55.0% | |
| !!! | GGCGGGGAAAGTTTTGGTTG+CGG | + | chr4_1:30846643-30846662 | Msa0543780:CDS | 55.0% |
| CGTGACGAATCCGAGTCTGA+AGG | + | chr4_1:30846814-30846833 | Msa0543780:CDS | 55.0% | |
| GTTACCGCTGCTGTTGTTCG+CGG | + | chr4_1:30847160-30847179 | Msa0543780:CDS | 55.0% | |
| ACAACCGCGAACAACAGCAG+CGG | - | chr4_1:30847167-30847186 | None:intergenic | 55.0% | |
| TGTTGCGTCAACCGCTGCAA+TGG | + | chr4_1:30847600-30847619 | Msa0543780:CDS | 55.0% | |
| GTTGCGTCAACCGCTGCAAT+GGG | + | chr4_1:30847601-30847620 | Msa0543780:CDS | 55.0% | |
| AGATCTGAGCCGCGACATCA+AGG | - | chr4_1:30847783-30847802 | None:intergenic | 55.0% | |
| !! | ATGGACTAGGCCAGGAACAG+TGG | + | chr4_1:30847932-30847951 | Msa0543780:CDS | 55.0% |
| ! | TGGACTAGGCCAGGAACAGT+GGG | + | chr4_1:30847933-30847952 | Msa0543780:CDS | 55.0% |
| TGGCAGCATGGTGGTTGCTA+AGG | + | chr4_1:30847971-30847990 | Msa0543780:CDS | 55.0% | |
| TAGCCGAGGTGCAAGCATGG+TGG | + | chr4_1:30846060-30846079 | Msa0543780:CDS | 60.0% | |
| !! | CGCGGTTCTGTTGGCTTGGT+GGG | - | chr4_1:30846213-30846232 | None:intergenic | 60.0% |
| !! | ACGCGGTTCTGTTGGCTTGG+TGG | - | chr4_1:30846214-30846233 | None:intergenic | 60.0% |
| ! | TCGACGCGGTTCTGTTGGCT+TGG | - | chr4_1:30846217-30846236 | None:intergenic | 60.0% |
| GACGGTGACACTGGATTCGG+TGG | + | chr4_1:30846518-30846537 | Msa0543780:CDS | 60.0% | |
| !! | TTTGTCGAACGCGGTGCTGC+TGG | + | chr4_1:30846572-30846591 | Msa0543780:CDS | 60.0% |
| !! | TTGTCGAACGCGGTGCTGCT+GGG | + | chr4_1:30846573-30846592 | Msa0543780:CDS | 60.0% |
| TAGCCGAGGTGCAAGCATGG+TGG | + | chr4_1:30846060-30846079 | Msa0543780:CDS | 60.0% | |
| !! | CGCGGTTCTGTTGGCTTGGT+GGG | - | chr4_1:30846213-30846232 | None:intergenic | 60.0% |
| !! | ACGCGGTTCTGTTGGCTTGG+TGG | - | chr4_1:30846214-30846233 | None:intergenic | 60.0% |
| ! | TCGACGCGGTTCTGTTGGCT+TGG | - | chr4_1:30846217-30846236 | None:intergenic | 60.0% |
| GACGGTGACACTGGATTCGG+TGG | + | chr4_1:30846518-30846537 | Msa0543780:CDS | 60.0% | |
| !! | TTTGTCGAACGCGGTGCTGC+TGG | + | chr4_1:30846572-30846591 | Msa0543780:CDS | 60.0% |
| !! | TTGTCGAACGCGGTGCTGCT+GGG | + | chr4_1:30846573-30846592 | Msa0543780:CDS | 60.0% |
| CGGTTGACGCAACACCACCC+TGG | - | chr4_1:30847594-30847613 | None:intergenic | 65.0% | |
| CGGTTGACGCAACACCACCC+TGG | - | chr4_1:30847594-30847613 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 30846029 | 30848004 | 30846029 | ID=Msa0543780;Name=Msa0543780 |
| chr4_1 | mRNA | 30846029 | 30848004 | 30846029 | ID=Msa0543780-mRNA-1;Parent=Msa0543780;Name=Msa0543780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|566 |
| chr4_1 | exon | 30846029 | 30847628 | 30846029 | ID=Msa0543780-mRNA-1:exon:8064;Parent=Msa0543780-mRNA-1 |
| chr4_1 | exon | 30847904 | 30848004 | 30847904 | ID=Msa0543780-mRNA-1:exon:8065;Parent=Msa0543780-mRNA-1 |
| chr4_1 | CDS | 30846029 | 30847628 | 30846029 | ID=Msa0543780-mRNA-1:cds;Parent=Msa0543780-mRNA-1 |
| chr4_1 | CDS | 30847904 | 30848004 | 30847904 | ID=Msa0543780-mRNA-1:cds;Parent=Msa0543780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
